Query 000169
Match_columns 1953
No_of_seqs 621 out of 3266
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 2.6E-77 8.9E-82 771.8 34.5 468 988-1518 224-713 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.8E-72 6.1E-77 711.6 36.0 469 998-1514 53-553 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3.1E-67 1.1E-71 639.1 34.3 444 993-1513 31-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 1.7E-47 5.9E-52 503.1 34.5 434 999-1473 152-635 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 5.7E-44 2E-48 421.0 31.4 427 1000-1454 9-473 (494)
6 2fwr_A DNA repair protein RAD2 100.0 1.4E-38 4.9E-43 384.8 22.6 356 998-1454 91-452 (472)
7 4a2p_A RIG-I, retinoic acid in 100.0 1.1E-36 3.8E-41 371.3 35.4 428 999-1454 6-506 (556)
8 3tbk_A RIG-I helicase domain; 100.0 3.1E-36 1.1E-40 366.0 33.6 434 999-1454 3-505 (555)
9 1z5z_A Helicase of the SNF2/RA 100.0 6.9E-38 2.4E-42 359.1 17.4 235 1228-1513 13-248 (271)
10 4a2q_A RIG-I, retinoic acid in 100.0 4.2E-36 1.4E-40 387.7 32.8 429 998-1454 246-747 (797)
11 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-35 5.9E-40 388.5 30.7 414 999-1454 247-747 (936)
12 2ykg_A Probable ATP-dependent 100.0 7.5E-34 2.6E-38 358.8 30.0 420 999-1454 12-514 (696)
13 2oca_A DAR protein, ATP-depend 100.0 1.1E-33 3.7E-38 345.4 28.6 337 1000-1454 113-456 (510)
14 4gl2_A Interferon-induced heli 100.0 2E-33 7E-38 355.0 25.5 395 999-1442 6-509 (699)
15 1xti_A Probable ATP-dependent 100.0 2.1E-31 7E-36 311.1 35.5 316 1000-1452 30-355 (391)
16 3h1t_A Type I site-specific re 100.0 8.1E-33 2.8E-37 344.8 23.7 354 998-1454 176-559 (590)
17 1s2m_A Putative ATP-dependent 100.0 5.2E-31 1.8E-35 309.6 31.2 312 1000-1451 43-362 (400)
18 1hv8_A Putative ATP-dependent 100.0 2.9E-31 1E-35 305.5 26.0 307 1000-1452 28-343 (367)
19 2j0s_A ATP-dependent RNA helic 100.0 1.7E-30 5.7E-35 306.8 31.5 315 1000-1452 59-381 (410)
20 3eiq_A Eukaryotic initiation f 100.0 6.5E-31 2.2E-35 309.1 23.2 316 1000-1452 62-385 (414)
21 3hgt_A HDA1 complex subunit 3; 100.0 3.4E-31 1.2E-35 309.7 19.6 202 1240-1454 20-235 (328)
22 3pey_A ATP-dependent RNA helic 100.0 9.7E-30 3.3E-34 295.7 28.7 313 1000-1452 27-354 (395)
23 2z0m_A 337AA long hypothetical 100.0 1.5E-29 5.1E-34 288.5 25.2 298 1000-1452 16-321 (337)
24 2db3_A ATP-dependent RNA helic 100.0 7.2E-29 2.5E-33 299.4 32.5 312 1000-1451 78-404 (434)
25 1fuu_A Yeast initiation factor 100.0 1.4E-30 4.9E-35 303.7 16.2 313 1000-1451 43-363 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 1.7E-28 5.9E-33 289.3 32.2 314 1000-1452 37-381 (417)
27 3fht_A ATP-dependent RNA helic 100.0 3.4E-28 1.2E-32 285.4 29.8 314 1000-1452 47-377 (412)
28 3oiy_A Reverse gyrase helicase 100.0 6.8E-27 2.3E-31 278.0 32.4 304 999-1453 20-362 (414)
29 1oyw_A RECQ helicase, ATP-depe 100.0 4.4E-27 1.5E-31 291.4 30.0 305 1000-1451 25-340 (523)
30 3sqw_A ATP-dependent RNA helic 100.0 1.9E-26 6.5E-31 287.5 33.2 324 1000-1452 43-396 (579)
31 3i5x_A ATP-dependent RNA helic 99.9 3.2E-26 1.1E-30 282.9 32.8 324 1000-1452 94-447 (563)
32 2v1x_A ATP-dependent DNA helic 99.9 2.8E-26 9.6E-31 288.4 29.0 308 999-1451 43-371 (591)
33 2eyq_A TRCF, transcription-rep 99.9 9.8E-26 3.3E-30 301.5 28.3 307 999-1451 602-919 (1151)
34 3fmp_B ATP-dependent RNA helic 99.9 5.9E-27 2E-31 284.3 13.2 314 999-1451 113-443 (479)
35 3fho_A ATP-dependent RNA helic 99.9 1.8E-26 6.2E-31 284.2 16.8 314 1000-1452 141-468 (508)
36 2xgj_A ATP-dependent RNA helic 99.9 1.5E-23 5.2E-28 277.2 29.7 357 998-1454 84-497 (1010)
37 1gm5_A RECG; helicase, replica 99.9 8.2E-25 2.8E-29 282.3 17.2 307 1000-1451 368-694 (780)
38 2p6r_A Afuhel308 helicase; pro 99.9 4.8E-23 1.6E-27 262.6 24.5 315 1000-1454 25-386 (702)
39 2va8_A SSO2462, SKI2-type heli 99.9 1.3E-22 4.5E-27 258.7 28.6 324 1000-1454 30-406 (715)
40 2zj8_A DNA helicase, putative 99.9 1.2E-22 4.1E-27 259.7 24.7 315 1000-1454 23-385 (720)
41 3l9o_A ATP-dependent RNA helic 99.9 2.1E-22 7.1E-27 268.5 27.2 348 999-1454 183-595 (1108)
42 4a4z_A Antiviral helicase SKI2 99.9 1.2E-21 4.2E-26 259.0 29.5 375 998-1453 37-489 (997)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.3E-22 2.2E-26 261.6 24.8 155 1000-1163 271-441 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.9 2E-21 6.8E-26 259.1 26.0 277 998-1426 76-388 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 5E-20 1.7E-24 245.1 21.6 271 999-1425 56-352 (1054)
46 2jlq_A Serine protease subunit 99.8 4E-19 1.4E-23 216.4 13.9 99 1343-1449 187-306 (451)
47 2v6i_A RNA helicase; membrane, 99.8 1E-18 3.5E-23 211.8 17.0 97 1343-1447 170-283 (431)
48 1tf5_A Preprotein translocase 99.8 1.6E-16 5.5E-21 204.2 36.7 121 1325-1450 413-541 (844)
49 1rif_A DAR protein, DNA helica 99.8 8E-19 2.7E-23 200.0 12.7 163 999-1177 112-278 (282)
50 1yks_A Genome polyprotein [con 99.8 2.1E-18 7.1E-23 209.8 16.7 101 1343-1451 176-296 (440)
51 2z83_A Helicase/nucleoside tri 99.8 2.1E-18 7.1E-23 210.7 13.7 100 1343-1450 189-309 (459)
52 2fsf_A Preprotein translocase 99.8 1.1E-17 3.6E-22 214.6 20.2 128 1325-1459 422-586 (853)
53 1nkt_A Preprotein translocase 99.7 1.3E-16 4.6E-21 204.8 29.2 121 1325-1450 441-613 (922)
54 2wv9_A Flavivirin protease NS2 99.7 1.2E-17 4.2E-22 213.1 17.1 101 1342-1450 408-529 (673)
55 2hjv_A ATP-dependent RNA helic 99.7 2.7E-17 9.3E-22 173.7 15.7 122 1325-1451 18-139 (163)
56 2whx_A Serine protease/ntpase/ 99.7 3.6E-17 1.2E-21 207.0 19.2 97 1343-1447 354-471 (618)
57 1t5i_A C_terminal domain of A 99.7 2.5E-17 8.5E-22 176.1 14.4 121 1326-1451 15-135 (172)
58 2xau_A PRE-mRNA-splicing facto 99.7 9.5E-17 3.3E-21 207.8 19.3 109 1343-1454 302-441 (773)
59 2fz4_A DNA repair protein RAD2 99.7 6.3E-17 2.2E-21 181.6 15.4 141 998-1165 91-233 (237)
60 2jgn_A DBX, DDX3, ATP-dependen 99.7 3E-17 1E-21 177.8 12.2 123 1325-1451 28-150 (185)
61 1fuk_A Eukaryotic initiation f 99.7 9E-17 3.1E-21 169.9 14.5 119 1329-1452 17-135 (165)
62 2p6n_A ATP-dependent RNA helic 99.7 7.4E-17 2.5E-21 175.9 13.0 120 1326-1451 39-158 (191)
63 4f92_B U5 small nuclear ribonu 99.7 3.9E-15 1.3E-19 205.8 33.0 151 1000-1160 926-1093(1724)
64 3o8b_A HCV NS3 protease/helica 99.7 1.1E-16 3.7E-21 203.3 15.7 92 1343-1446 395-507 (666)
65 3rc3_A ATP-dependent RNA helic 99.7 6E-16 2E-20 197.6 21.0 107 1346-1454 322-443 (677)
66 2rb4_A ATP-dependent RNA helic 99.6 4.2E-16 1.4E-20 166.3 12.7 118 1328-1450 20-143 (175)
67 3eaq_A Heat resistant RNA depe 99.6 8.2E-16 2.8E-20 169.7 15.3 122 1325-1451 14-135 (212)
68 2gxq_A Heat resistant RNA depe 99.6 1.8E-15 6E-20 162.9 16.4 154 1000-1160 23-185 (207)
69 3b6e_A Interferon-induced heli 99.6 8.4E-16 2.9E-20 165.6 13.7 131 999-1136 32-176 (216)
70 1t6n_A Probable ATP-dependent 99.6 1.8E-15 6.1E-20 165.3 15.5 158 1000-1163 36-203 (220)
71 2yjt_D ATP-dependent RNA helic 99.4 2.9E-17 9.8E-22 174.7 0.0 120 1327-1451 15-134 (170)
72 4f92_B U5 small nuclear ribonu 99.6 1.7E-14 5.9E-19 199.4 26.8 157 1000-1169 79-261 (1724)
73 3jux_A Protein translocase sub 99.6 3.8E-14 1.3E-18 179.4 27.2 121 1325-1450 455-583 (822)
74 1c4o_A DNA nucleotide excision 99.6 1.1E-13 3.9E-18 176.6 30.4 113 1327-1442 422-539 (664)
75 1vec_A ATP-dependent RNA helic 99.6 7.1E-15 2.4E-19 158.4 16.1 154 1000-1160 25-187 (206)
76 1q0u_A Bstdead; DEAD protein, 99.6 4.6E-15 1.6E-19 162.4 14.8 160 1000-1167 26-197 (219)
77 2oxc_A Probable ATP-dependent 99.6 8.1E-15 2.8E-19 162.1 16.3 153 1000-1160 46-208 (230)
78 2pl3_A Probable ATP-dependent 99.6 1.1E-14 3.8E-19 160.9 16.4 153 1000-1160 47-212 (236)
79 3ber_A Probable ATP-dependent 99.6 1.5E-14 5E-19 162.9 16.6 155 1000-1161 65-228 (249)
80 1qde_A EIF4A, translation init 99.6 2.1E-14 7E-19 157.0 15.4 154 1000-1161 36-197 (224)
81 3i32_A Heat resistant RNA depe 99.6 1.2E-14 4E-19 169.6 14.0 122 1325-1451 11-132 (300)
82 1wrb_A DJVLGB; RNA helicase, D 99.6 3.1E-14 1.1E-18 159.1 16.1 154 1000-1160 45-219 (253)
83 3bor_A Human initiation factor 99.6 2.3E-14 7.8E-19 159.4 14.6 156 1000-1161 52-215 (237)
84 2d7d_A Uvrabc system protein B 99.5 1.9E-12 6.5E-17 165.3 32.7 118 1327-1448 428-550 (661)
85 3iuy_A Probable ATP-dependent 99.5 2.3E-13 7.8E-18 149.7 16.5 154 1000-1160 42-208 (228)
86 3dkp_A Probable ATP-dependent 99.5 3E-13 1E-17 150.2 15.8 155 1000-1160 51-220 (245)
87 3fe2_A Probable ATP-dependent 99.4 1.1E-12 3.9E-17 146.0 17.6 154 1000-1160 51-217 (242)
88 3ly5_A ATP-dependent RNA helic 99.4 8.9E-13 3.1E-17 149.5 16.7 155 1000-1161 76-243 (262)
89 2vl7_A XPD; helicase, unknown 99.3 5.5E-11 1.9E-15 148.5 22.1 111 1332-1449 371-516 (540)
90 3fmo_B ATP-dependent RNA helic 99.3 1E-11 3.5E-16 144.0 14.0 155 999-1161 113-278 (300)
91 2ipc_A Preprotein translocase 99.3 2.5E-10 8.6E-15 147.2 27.7 148 998-1173 77-240 (997)
92 4a15_A XPD helicase, ATP-depen 99.0 2.5E-08 8.6E-13 126.8 23.6 82 1000-1083 3-87 (620)
93 3llm_A ATP-dependent RNA helic 98.8 1.9E-08 6.3E-13 112.2 12.4 149 1000-1160 61-218 (235)
94 3crv_A XPD/RAD3 related DNA he 98.7 3.3E-08 1.1E-12 123.7 13.1 132 999-1136 2-187 (551)
95 4b3f_X DNA-binding protein smu 97.3 0.0022 7.6E-08 81.9 16.6 152 998-1163 187-402 (646)
96 3upu_A ATP-dependent DNA helic 97.2 0.0029 9.9E-08 77.6 14.9 142 999-1163 24-167 (459)
97 2gk6_A Regulator of nonsense t 97.1 0.0043 1.5E-07 79.1 15.6 150 1000-1163 180-376 (624)
98 3e1s_A Exodeoxyribonuclease V, 97.0 0.0031 1E-07 80.0 13.4 132 998-1163 187-318 (574)
99 2xzl_A ATP-dependent helicase 96.8 0.0069 2.4E-07 79.6 14.7 149 1000-1163 360-554 (802)
100 2wjy_A Regulator of nonsense t 96.8 0.0068 2.3E-07 79.7 14.3 150 1000-1163 356-552 (800)
101 1w36_D RECD, exodeoxyribonucle 96.4 0.01 3.5E-07 75.7 11.8 145 1002-1164 151-302 (608)
102 2o0j_A Terminase, DNA packagin 95.6 0.084 2.9E-06 64.1 14.0 156 999-1174 162-325 (385)
103 3lfu_A DNA helicase II; SF1 he 95.3 0.069 2.4E-06 67.5 12.4 68 1000-1073 9-78 (647)
104 2orw_A Thymidine kinase; TMTK, 94.9 0.036 1.2E-06 60.2 7.0 35 1022-1059 6-40 (184)
105 3vkw_A Replicase large subunit 94.5 0.044 1.5E-06 67.7 7.3 108 1022-1163 164-272 (446)
106 3cpe_A Terminase, DNA packagin 94.4 0.26 8.8E-06 62.6 14.3 148 998-1163 161-316 (592)
107 2b8t_A Thymidine kinase; deoxy 94.2 0.099 3.4E-06 59.0 8.7 109 1020-1159 13-124 (223)
108 3syl_A Protein CBBX; photosynt 93.4 0.099 3.4E-06 59.7 7.1 40 1020-1059 68-108 (309)
109 2j9r_A Thymidine kinase; TK1, 93.4 0.29 1E-05 55.1 10.5 35 1023-1060 32-66 (214)
110 3iu6_A Protein polybromo-1; PB 93.2 0.0043 1.5E-07 66.1 -4.2 79 1723-1812 22-111 (147)
111 1l8q_A Chromosomal replication 92.8 0.41 1.4E-05 55.4 11.0 98 1020-1159 38-139 (324)
112 1a5t_A Delta prime, HOLB; zinc 92.7 0.28 9.6E-06 57.6 9.6 44 1001-1044 3-49 (334)
113 1xx6_A Thymidine kinase; NESG, 92.4 0.37 1.3E-05 53.1 9.4 35 1022-1059 11-45 (191)
114 2chg_A Replication factor C sm 92.3 0.48 1.6E-05 50.1 9.9 41 1121-1161 101-142 (226)
115 1uaa_A REP helicase, protein ( 91.8 0.78 2.7E-05 58.8 12.8 69 1000-1074 2-72 (673)
116 3u61_B DNA polymerase accessor 91.6 0.34 1.2E-05 55.9 8.5 41 1122-1162 105-147 (324)
117 1jbk_A CLPB protein; beta barr 91.3 0.9 3.1E-05 46.8 10.4 27 1019-1045 43-69 (195)
118 2p65_A Hypothetical protein PF 90.8 0.9 3.1E-05 46.9 9.8 26 1019-1044 43-68 (187)
119 1njg_A DNA polymerase III subu 90.1 1.2 4.2E-05 47.3 10.5 42 1002-1043 28-69 (250)
120 3bos_A Putative DNA replicatio 90.1 0.78 2.7E-05 49.6 9.0 38 1007-1044 38-77 (242)
121 3eie_A Vacuolar protein sortin 90.0 0.48 1.6E-05 55.2 7.7 41 1020-1066 52-92 (322)
122 2qp9_X Vacuolar protein sortin 88.8 0.52 1.8E-05 56.0 6.9 37 1020-1062 85-121 (355)
123 2orv_A Thymidine kinase; TP4A 88.6 0.99 3.4E-05 51.5 8.6 35 1023-1060 23-57 (234)
124 3n70_A Transport activator; si 88.6 0.34 1.1E-05 50.0 4.5 31 1010-1040 15-45 (145)
125 3ec2_A DNA replication protein 88.6 4.9 0.00017 42.3 13.5 65 1002-1068 16-85 (180)
126 2bjv_A PSP operon transcriptio 88.4 0.81 2.8E-05 51.4 7.9 32 1009-1040 19-50 (265)
127 1sxj_D Activator 1 41 kDa subu 88.4 0.72 2.5E-05 53.3 7.6 39 1122-1160 133-172 (353)
128 2qby_B CDC6 homolog 3, cell di 88.4 1.2 4.1E-05 52.1 9.6 44 1002-1045 25-71 (384)
129 2gno_A DNA polymerase III, gam 88.3 0.86 2.9E-05 53.4 8.3 38 1122-1159 82-120 (305)
130 3h4m_A Proteasome-activating n 87.9 0.63 2.2E-05 52.5 6.5 24 1018-1041 50-73 (285)
131 2dat_A Possible global transcr 87.8 0.026 8.9E-07 58.1 -4.4 75 1728-1808 32-117 (123)
132 3mqm_A Probable histone-lysine 87.8 0.024 8.4E-07 58.4 -4.6 75 1728-1808 28-113 (126)
133 2z4s_A Chromosomal replication 87.6 1.5 5.3E-05 53.6 10.2 101 1020-1159 131-235 (440)
134 1iqp_A RFCS; clamp loader, ext 87.4 1.6 5.6E-05 49.6 9.6 40 1121-1160 109-149 (327)
135 2v1u_A Cell division control p 87.2 1.1 3.9E-05 51.9 8.4 44 1002-1045 24-70 (387)
136 3te6_A Regulatory protein SIR3 87.0 5.7 0.0002 47.1 14.2 44 1002-1045 25-71 (318)
137 3crv_A XPD/RAD3 related DNA he 86.3 3.4 0.00012 51.9 12.5 85 1332-1426 380-473 (551)
138 3co5_A Putative two-component 85.6 0.3 1E-05 50.4 2.1 24 1016-1039 24-47 (143)
139 1sxj_B Activator 1 37 kDa subu 85.6 1.2 3.9E-05 50.7 7.1 39 1122-1160 107-146 (323)
140 3ljw_A Protein polybromo-1; al 84.9 0.034 1.2E-06 57.0 -5.3 72 1728-1805 27-109 (120)
141 3uk6_A RUVB-like 2; hexameric 84.9 1.5 5.1E-05 51.3 7.8 54 1002-1059 49-106 (368)
142 3mb4_A Protein polybromo-1; PB 84.6 0.036 1.2E-06 57.1 -5.3 73 1728-1806 34-117 (124)
143 2grc_A Probable global transcr 84.1 0.031 1.1E-06 58.0 -6.0 82 1725-1812 28-120 (129)
144 2qz4_A Paraplegin; AAA+, SPG7, 84.1 2.7 9.2E-05 46.5 9.0 24 1019-1042 39-62 (262)
145 3vfd_A Spastin; ATPase, microt 84.1 1.4 4.7E-05 52.7 7.2 41 1019-1065 148-188 (389)
146 3e2i_A Thymidine kinase; Zn-bi 84.0 4.1 0.00014 46.1 10.5 35 1023-1060 32-66 (219)
147 1jr3_A DNA polymerase III subu 84.0 2.8 9.7E-05 48.7 9.6 38 1122-1159 119-157 (373)
148 1ofh_A ATP-dependent HSL prote 83.8 2.3 7.8E-05 48.1 8.5 25 1019-1043 50-74 (310)
149 2r2a_A Uncharacterized protein 83.6 0.86 2.9E-05 50.4 4.7 22 1022-1043 8-29 (199)
150 3tlp_A Protein polybromo-1; PB 83.6 0.047 1.6E-06 57.9 -5.1 80 1723-1808 39-129 (150)
151 2zan_A Vacuolar protein sortin 82.9 1.4 4.7E-05 54.1 6.6 41 1020-1065 168-208 (444)
152 3k2j_A Protein polybromo-1; PB 82.9 0.053 1.8E-06 56.5 -4.9 72 1728-1805 36-118 (130)
153 3cf0_A Transitional endoplasmi 82.3 2 6.9E-05 49.6 7.4 42 1018-1065 48-89 (301)
154 1xwi_A SKD1 protein; VPS4B, AA 82.1 1.1 3.8E-05 52.5 5.1 24 1020-1043 46-69 (322)
155 3iu5_A Protein polybromo-1; PB 81.2 0.056 1.9E-06 55.0 -5.4 75 1728-1808 24-109 (116)
156 3d8b_A Fidgetin-like protein 1 81.1 2.2 7.5E-05 50.6 7.3 37 1019-1061 117-153 (357)
157 3t15_A Ribulose bisphosphate c 80.4 2.5 8.5E-05 48.8 7.2 40 1020-1065 37-76 (293)
158 2chq_A Replication factor C sm 80.2 1.1 3.9E-05 50.7 4.3 24 1021-1044 40-63 (319)
159 2qby_A CDC6 homolog 1, cell di 80.1 4.1 0.00014 47.2 8.9 44 1002-1045 25-71 (386)
160 1w4r_A Thymidine kinase; type 79.9 3.8 0.00013 45.6 8.2 34 1023-1059 24-57 (195)
161 4b4t_J 26S protease regulatory 79.8 2.2 7.5E-05 52.2 6.8 47 1018-1070 181-227 (405)
162 1fnn_A CDC6P, cell division co 78.3 6.4 0.00022 45.8 9.9 23 1021-1043 46-68 (389)
163 3hu3_A Transitional endoplasmi 77.8 2.7 9.3E-05 52.4 6.9 39 1018-1062 237-275 (489)
164 1sxj_E Activator 1 40 kDa subu 77.0 5.6 0.00019 46.2 8.8 41 1122-1162 134-175 (354)
165 1pjr_A PCRA; DNA repair, DNA r 76.6 8.5 0.00029 50.0 11.3 104 1000-1132 11-120 (724)
166 1gm5_A RECG; helicase, replica 75.4 9.6 0.00033 50.3 11.3 99 1325-1425 398-500 (780)
167 3k1j_A LON protease, ATP-depen 75.3 1.8 6.1E-05 55.1 4.4 34 1008-1041 49-82 (604)
168 2q6t_A DNAB replication FORK h 75.3 9.2 0.00032 46.7 10.5 51 1007-1059 188-238 (444)
169 2r6a_A DNAB helicase, replicat 74.1 25 0.00087 43.0 14.0 51 1007-1059 191-241 (454)
170 1sxj_C Activator 1 40 kDa subu 73.7 5.4 0.00018 46.6 7.6 39 1122-1160 110-149 (340)
171 1sxj_A Activator 1 95 kDa subu 72.9 6.2 0.00021 49.2 8.3 24 1020-1043 78-101 (516)
172 4b4t_L 26S protease subunit RP 72.5 2.5 8.4E-05 52.3 4.5 44 1019-1068 215-258 (437)
173 3b9p_A CG5977-PA, isoform A; A 72.2 2.3 8E-05 48.2 4.0 23 1019-1041 54-76 (297)
174 1ojl_A Transcriptional regulat 70.8 6.7 0.00023 45.6 7.5 43 1012-1057 18-60 (304)
175 3hjh_A Transcription-repair-co 70.6 15 0.00052 45.9 11.0 86 1021-1114 16-116 (483)
176 1g5t_A COB(I)alamin adenosyltr 70.1 19 0.00066 40.0 10.5 137 1019-1175 28-174 (196)
177 3pvs_A Replication-associated 68.9 7.6 0.00026 47.8 7.8 21 1021-1041 52-72 (447)
178 4b4t_M 26S protease regulatory 68.9 1.8 6.2E-05 53.4 2.3 44 1019-1068 215-258 (434)
179 1d2n_A N-ethylmaleimide-sensit 68.6 8.9 0.0003 43.1 7.7 23 1020-1042 65-87 (272)
180 3g0l_A Hwalp4, bromodomain adj 68.6 0.27 9.3E-06 50.0 -4.2 68 1731-1804 29-107 (117)
181 2qen_A Walker-type ATPase; unk 68.0 12 0.0004 42.8 8.6 38 1123-1160 129-173 (350)
182 4b4t_I 26S protease regulatory 67.8 3.6 0.00012 50.8 4.5 46 1019-1070 216-261 (437)
183 4a1f_A DNAB helicase, replicat 67.6 14 0.0005 44.0 9.5 50 1007-1059 34-83 (338)
184 1qvr_A CLPB protein; coiled co 66.9 13 0.00045 49.2 9.9 27 1019-1045 191-217 (854)
185 1r6b_X CLPA protein; AAA+, N-t 66.6 19 0.00066 46.7 11.2 27 1018-1044 206-232 (758)
186 4alg_A Bromodomain-containing 66.3 0.48 1.6E-05 50.7 -3.1 69 1731-1805 48-129 (154)
187 3d7c_A General control of amin 66.2 0.44 1.5E-05 48.1 -3.2 57 1731-1788 23-90 (112)
188 1w5s_A Origin recognition comp 65.0 9.7 0.00033 44.8 7.4 43 1002-1044 27-77 (412)
189 3nxb_A CAT eye syndrome critic 64.3 0.35 1.2E-05 49.1 -4.4 56 1732-1788 33-99 (116)
190 2cvh_A DNA repair and recombin 63.7 23 0.0008 37.8 9.4 46 1007-1058 7-53 (220)
191 3oiy_A Reverse gyrase helicase 63.6 23 0.00079 42.0 10.3 95 1325-1421 45-145 (414)
192 2i7k_A Bromodomain-containing 63.4 0.68 2.3E-05 47.4 -2.5 56 1732-1788 25-91 (117)
193 1e6i_A Transcriptional activat 63.4 0.53 1.8E-05 48.3 -3.3 69 1730-1804 28-107 (121)
194 2w58_A DNAI, primosome compone 63.3 16 0.00053 39.0 7.9 35 1020-1057 55-89 (202)
195 3uv4_A Second bromodomain of h 63.2 0.57 2E-05 50.4 -3.2 58 1730-1788 45-113 (158)
196 4b4t_K 26S protease regulatory 63.1 3.3 0.00011 51.0 3.0 42 1019-1066 206-247 (428)
197 4b4t_H 26S protease regulatory 62.8 3.9 0.00013 50.9 3.5 45 1018-1068 242-286 (467)
198 3mb3_A PH-interacting protein; 62.3 0.42 1.4E-05 49.8 -4.3 66 1732-1803 38-115 (135)
199 3kl4_A SRP54, signal recogniti 62.1 14 0.00049 45.5 8.3 33 1022-1057 100-132 (433)
200 3cf2_A TER ATPase, transitiona 62.0 16 0.00053 48.6 9.0 42 1019-1066 511-552 (806)
201 2d9e_A Peregrin; four-helix bu 61.5 0.55 1.9E-05 48.3 -3.6 63 1732-1800 24-97 (121)
202 4dzz_A Plasmid partitioning pr 60.5 43 0.0015 35.4 10.7 111 1026-1175 9-121 (206)
203 1um8_A ATP-dependent CLP prote 60.3 14 0.00047 43.8 7.5 24 1019-1042 72-95 (376)
204 2ri7_A Nucleosome-remodeling f 60.2 0.39 1.3E-05 51.8 -5.2 70 1730-1805 87-167 (174)
205 3hme_A Bromodomain-containing 60.0 0.69 2.3E-05 47.6 -3.2 56 1732-1788 30-96 (123)
206 2iut_A DNA translocase FTSK; n 59.7 24 0.00082 45.1 9.8 42 1019-1060 214-256 (574)
207 2kjq_A DNAA-related protein; s 59.7 12 0.00043 39.0 6.2 27 1018-1044 35-61 (149)
208 2r10_A Chromatin structure-rem 58.8 0.6 2.1E-05 56.2 -4.5 75 1728-1808 226-311 (361)
209 3bgw_A DNAB-like replicative h 58.7 16 0.00056 44.9 8.0 51 1006-1059 184-234 (444)
210 3dm5_A SRP54, signal recogniti 57.7 18 0.00062 44.8 8.1 33 1022-1057 103-135 (443)
211 2ce7_A Cell division protein F 56.6 19 0.00066 44.9 8.1 22 1020-1041 50-71 (476)
212 2oss_A HUNK1 protein, bromodom 56.4 0.61 2.1E-05 48.3 -4.3 70 1730-1805 36-118 (127)
213 2fna_A Conserved hypothetical 56.4 53 0.0018 37.4 11.2 39 1122-1160 137-179 (357)
214 2ouo_A HUNK1 protein, bromodom 55.8 0.52 1.8E-05 49.0 -5.0 69 1731-1805 41-122 (130)
215 3jvl_A Bromodomain-containing 55.6 0.38 1.3E-05 49.1 -6.0 70 1730-1805 27-109 (120)
216 2eyq_A TRCF, transcription-rep 55.6 34 0.0012 47.0 11.0 95 1325-1421 633-731 (1151)
217 3u4q_B ATP-dependent helicase/ 55.2 17 0.00058 49.8 8.0 85 1023-1132 6-91 (1166)
218 2r0y_A Chromatin structure-rem 55.1 0.63 2.1E-05 55.1 -5.1 75 1728-1808 176-261 (311)
219 3pxi_A Negative regulator of g 54.5 14 0.00046 48.3 6.6 23 1021-1043 523-545 (758)
220 3bh0_A DNAB-like replicative h 54.3 22 0.00074 41.5 7.7 50 1007-1059 56-105 (315)
221 3rcw_A Bromodomain-containing 54.0 0.97 3.3E-05 47.1 -3.3 65 1730-1800 28-103 (135)
222 3p1f_A CREB-binding protein; s 50.8 0.98 3.4E-05 46.0 -3.8 57 1731-1788 28-97 (119)
223 1ixz_A ATP-dependent metallopr 50.5 44 0.0015 37.0 9.1 21 1020-1040 50-70 (254)
224 4ddu_A Reverse gyrase; topoiso 50.3 34 0.0011 46.9 9.6 98 1325-1424 102-205 (1104)
225 2dr3_A UPF0273 protein PH0284; 49.9 53 0.0018 35.6 9.5 48 1019-1069 23-70 (247)
226 2qgz_A Helicase loader, putati 49.9 30 0.001 40.3 8.0 37 1019-1057 152-188 (308)
227 3dai_A ATPase family AAA domai 49.1 1.7 5.7E-05 45.1 -2.5 50 1732-1782 27-77 (130)
228 3q2e_A Bromodomain and WD repe 46.8 4.3 0.00015 41.6 0.2 67 1732-1804 27-105 (123)
229 2r8r_A Sensor protein; KDPD, P 46.6 13 0.00045 42.3 4.1 27 1019-1045 6-32 (228)
230 1iy2_A ATP-dependent metallopr 46.4 46 0.0016 37.6 8.5 21 1021-1041 75-95 (278)
231 1xp8_A RECA protein, recombina 46.0 28 0.00095 42.0 6.9 56 1007-1065 60-117 (366)
232 3fkm_X Signaling protein; brom 45.9 1.1 3.7E-05 48.6 -4.7 67 1731-1803 37-116 (166)
233 1wp9_A ATP-dependent RNA helic 44.7 81 0.0028 37.0 10.6 89 1326-1421 33-131 (494)
234 2zpa_A Uncharacterized protein 44.0 25 0.00086 45.7 6.5 54 999-1060 174-227 (671)
235 2dhr_A FTSH; AAA+ protein, hex 42.6 69 0.0024 40.2 10.0 22 1020-1041 65-86 (499)
236 3uv5_A Transcription initiatio 42.2 2.2 7.4E-05 49.3 -3.2 66 1732-1803 31-107 (265)
237 3aad_A Transcription initiatio 41.6 1.6 5.6E-05 51.1 -4.4 68 1731-1804 186-264 (292)
238 3cf2_A TER ATPase, transitiona 41.1 28 0.00096 46.2 6.4 44 1020-1069 239-282 (806)
239 3uv5_A Transcription initiatio 40.6 1.7 5.9E-05 50.0 -4.3 68 1731-1804 153-231 (265)
240 1t6n_A Probable ATP-dependent 40.0 1.5E+02 0.005 31.8 10.9 92 1325-1421 60-164 (220)
241 3ber_A Probable ATP-dependent 37.5 1.8E+02 0.0061 32.3 11.4 91 1325-1421 89-192 (249)
242 3fe2_A Probable ATP-dependent 37.4 1.7E+02 0.0059 32.0 11.2 91 1325-1421 75-182 (242)
243 1vma_A Cell division protein F 35.7 50 0.0017 38.8 6.8 32 1023-1057 108-139 (306)
244 2zr9_A Protein RECA, recombina 34.5 57 0.002 38.9 7.2 56 1006-1064 46-103 (349)
245 3aad_A Transcription initiatio 34.3 3.6 0.00012 48.2 -3.1 57 1731-1788 63-130 (292)
246 1zu4_A FTSY; GTPase, signal re 34.0 72 0.0025 37.6 7.8 32 1023-1057 109-140 (320)
247 2oxc_A Probable ATP-dependent 33.0 1.3E+02 0.0043 32.9 9.1 90 1325-1421 70-172 (230)
248 1q57_A DNA primase/helicase; d 32.8 45 0.0015 41.3 6.1 49 1009-1059 232-280 (503)
249 3nhm_A Response regulator; pro 31.6 1.6E+02 0.0054 28.3 8.7 99 1338-1442 21-123 (133)
250 2c9o_A RUVB-like 1; hexameric 30.9 39 0.0013 41.4 5.1 58 1003-1064 43-104 (456)
251 3i42_A Response regulator rece 30.7 63 0.0022 31.0 5.6 97 1342-1444 25-125 (127)
252 2pl3_A Probable ATP-dependent 30.6 2.1E+02 0.0073 31.0 10.4 90 1325-1421 71-177 (236)
253 1gku_B Reverse gyrase, TOP-RG; 30.3 1.1E+02 0.0037 41.8 9.5 93 1325-1421 80-181 (1054)
254 2yyn_A Transcription intermedi 30.1 4.1 0.00014 42.6 -3.2 69 1730-1805 35-116 (135)
255 1xti_A Probable ATP-dependent 30.0 2.1E+02 0.0071 33.1 10.8 92 1325-1421 54-158 (391)
256 2z43_A DNA repair and recombin 29.9 1E+02 0.0034 36.0 8.1 53 1007-1059 94-150 (324)
257 3iuy_A Probable ATP-dependent 29.8 1.3E+02 0.0043 32.6 8.4 73 1343-1421 93-173 (228)
258 2ck3_A ATP synthase subunit al 29.7 2E+02 0.0068 36.4 11.0 79 1006-1085 150-236 (510)
259 3a10_A Response regulator; pho 29.3 1.6E+02 0.0056 27.4 8.1 90 1343-1439 24-115 (116)
260 3u4q_A ATP-dependent helicase/ 29.3 51 0.0017 45.6 6.3 121 999-1132 9-137 (1232)
261 1u94_A RECA protein, recombina 29.1 84 0.0029 37.6 7.4 50 1007-1059 49-100 (356)
262 3ly5_A ATP-dependent RNA helic 28.9 3.2E+02 0.011 30.5 11.7 90 1325-1421 100-207 (262)
263 3g5j_A Putative ATP/GTP bindin 28.7 62 0.0021 32.1 5.3 48 1331-1379 76-125 (134)
264 2px0_A Flagellar biosynthesis 28.6 76 0.0026 36.9 6.7 35 1021-1057 107-141 (296)
265 2j48_A Two-component sensor ki 28.5 1.1E+02 0.0038 28.2 6.7 93 1342-1440 23-117 (119)
266 2r44_A Uncharacterized protein 26.8 38 0.0013 39.1 3.8 23 1019-1041 46-68 (331)
267 4a2p_A RIG-I, retinoic acid in 26.8 1.1E+02 0.0037 37.4 7.9 91 1325-1421 31-136 (556)
268 2zts_A Putative uncharacterize 26.7 85 0.0029 34.0 6.3 39 1019-1059 30-68 (251)
269 3tbk_A RIG-I helicase domain; 25.6 85 0.0029 38.1 6.7 91 1325-1421 28-133 (555)
270 3grc_A Sensor protein, kinase; 25.3 1.7E+02 0.0059 28.4 7.7 96 1342-1441 28-127 (140)
271 1ls1_A Signal recognition part 25.0 1.3E+02 0.0046 34.8 7.9 32 1023-1057 102-133 (295)
272 3cg4_A Response regulator rece 24.6 2.9E+02 0.01 26.7 9.2 95 1343-1441 30-127 (142)
273 2jgn_A DBX, DDX3, ATP-dependen 24.2 2E+02 0.0067 30.8 8.5 64 1042-1108 38-104 (185)
274 3eqz_A Response regulator; str 24.2 1.5E+02 0.0051 28.4 7.0 96 1344-1444 27-128 (135)
275 3i5x_A ATP-dependent RNA helic 24.1 2.6E+02 0.0088 34.6 10.7 78 1030-1108 319-400 (563)
276 2v1x_A ATP-dependent DNA helic 24.1 1.6E+02 0.0056 37.4 9.1 79 1325-1406 68-146 (591)
277 3sqw_A ATP-dependent RNA helic 24.1 2.5E+02 0.0084 35.2 10.6 76 1032-1108 270-349 (579)
278 1ypw_A Transitional endoplasmi 24.0 58 0.002 43.1 5.1 22 1019-1040 238-259 (806)
279 4a2q_A RIG-I, retinoic acid in 23.6 1.4E+02 0.0048 39.1 8.5 91 1325-1421 272-377 (797)
280 3oaa_A ATP synthase subunit al 23.4 3E+02 0.01 34.9 10.9 75 1006-1085 150-228 (513)
281 3m6a_A ATP-dependent protease 23.4 1.2E+02 0.0042 38.1 7.7 24 1019-1042 108-131 (543)
282 2gxq_A Heat resistant RNA depe 23.3 2.5E+02 0.0085 29.5 9.0 91 1325-1421 47-150 (207)
283 2b4a_A BH3024; flavodoxin-like 23.3 2.4E+02 0.0081 27.3 8.3 90 1343-1440 38-130 (138)
284 1lv7_A FTSH; alpha/beta domain 22.5 1.1E+02 0.0036 34.0 6.2 23 1019-1041 45-67 (257)
285 3b6e_A Interferon-induced heli 22.4 1E+02 0.0035 32.5 5.8 55 1326-1380 58-122 (216)
286 3hr8_A Protein RECA; alpha and 22.3 1.4E+02 0.0047 36.0 7.4 53 1007-1062 47-101 (356)
287 2qe7_A ATP synthase subunit al 22.3 1.9E+02 0.0066 36.5 8.9 76 1006-1086 150-229 (502)
288 2dkw_A Hypothetical protein KI 22.2 7.7 0.00026 40.5 -2.9 45 1733-1782 30-74 (131)
289 2r10_A Chromatin structure-rem 21.7 5.9 0.0002 47.7 -4.4 69 1728-1804 93-173 (361)
290 2yxb_A Coenzyme B12-dependent 21.3 1.7E+02 0.006 31.0 7.3 57 1343-1404 17-77 (161)
291 2r9v_A ATP synthase subunit al 21.0 2.5E+02 0.0086 35.6 9.6 75 1006-1085 163-241 (515)
292 3ipz_A Monothiol glutaredoxin- 21.0 2.5E+02 0.0087 27.5 7.9 59 1343-1403 16-80 (109)
293 3o36_A Transcription intermedi 20.9 4.3 0.00015 44.2 -5.3 49 1732-1782 98-149 (184)
294 3hws_A ATP-dependent CLP prote 20.9 1.1E+02 0.0036 36.0 6.1 35 1019-1059 51-85 (363)
295 1v5w_A DMC1, meiotic recombina 20.8 1.7E+02 0.0058 34.5 7.8 53 1007-1059 109-165 (343)
296 1qde_A EIF4A, translation init 20.8 1.4E+02 0.005 31.9 6.7 59 1325-1383 60-125 (224)
297 3n53_A Response regulator rece 20.6 4.3E+02 0.015 25.6 9.6 89 1345-1440 27-121 (140)
298 1hqc_A RUVB; extended AAA-ATPa 20.5 1.3E+02 0.0043 34.2 6.4 24 1019-1042 38-61 (324)
299 1oyw_A RECQ helicase, ATP-depe 20.2 2.6E+02 0.0088 34.9 9.6 78 1325-1407 49-126 (523)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-77 Score=771.78 Aligned_cols=468 Identities=40% Similarity=0.679 Sum_probs=396.0
Q ss_pred hhccCCcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000169 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (1953)
Q Consensus 988 ~v~eqPs~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (1953)
.+..+|..+.+++|||||++||+||+.++.++.||||||+||+|||+++|++|.+++......+|+|||||.+++.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 44567888888899999999999999999999999999999999999999999999877888899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH---------HhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCch
Q 000169 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (1953)
Q Consensus 1068 Ef~KwaPslkVvvy~Gs~deRk~l~~qe---------i~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~ 1138 (1953)
||.+|+|++.+++|+|....+..+.... .....++|+||||+++.++...|..++|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 9999999999999999988776543322 2345789999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000169 1139 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (1953)
Q Consensus 1139 SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~ 1218 (1953)
+++++++..+.+.+||+|||||++|++.|||++|+||.|+.|.....|.-.. . . ......+.
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~-----~-------~~~~~~~~ 445 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q-----D-------EEQEEYIH 445 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C-----T-------THHHHHHH
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c-----c-------hhHHHHHH
Confidence 9999999999999999999999999999999999999999998665553110 0 0 11223467
Q ss_pred HHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000169 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (1953)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nil 1298 (1953)
.|+.++.||++||++.+|...||++.+.++.|.|++.|+.+|+.+.......+.... ......+++.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~~~l~~l 513 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHFSLLNIM 513 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHH
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchhhHHHHH
Confidence 899999999999999999999999999999999999999999998765433222110 11234578899
Q ss_pred HHHHHhcCCCCCCCCCcccc-------------chhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH
Q 000169 1299 MELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365 (1953)
Q Consensus 1299 mqLRKiCNHP~L~~p~l~dl-------------s~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~ 1365 (1953)
+.||++|+||+++....... ....++..++|+.+|..+|..+...|+||||||+|+.++++|+++|.
T Consensus 514 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 514 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999875432110 11345678999999999999999999999999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1366 ~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
.+|+.|++|||+++.++|..++++|+++++..+|||+||++||+||||+.||+||+||++|||..++||+||+||+||++
T Consensus 594 ~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 594 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccccccc
Q 000169 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGkFD~k 1518 (1953)
+|.||+|++ .+|||++|+++ +..|+.++..||+.|.++..
T Consensus 674 ~V~Vyrlv~--------------------------------~~TiEe~i~~~-~~~K~~l~~~vi~~~~~~~~ 713 (800)
T 3mwy_W 674 HVMVYRLVS--------------------------------KDTVEEEVLER-ARKKMILEYAIISLGVTDGN 713 (800)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHTTSCC-----------
T ss_pred eEEEEEEec--------------------------------CCCHHHHHHHH-HHHHHHHHHHHHccCccccc
Confidence 999999986 37999999995 57899999999998877643
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-72 Score=711.62 Aligned_cols=469 Identities=30% Similarity=0.484 Sum_probs=389.6
Q ss_pred CCCCcHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHHHHHHHH
Q 000169 998 AGTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~SLL~QW~~E 1068 (1953)
...|||||++||.||+..+ .++.||||||+||+|||+++|++|..++...+ ..+++|||||.+++.||..|
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E 132 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNE 132 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHH
Confidence 3589999999999999876 45678999999999999999999999876443 24569999999999999999
Q ss_pred HHHHCCC-CeEEEEec-chhhHhHHHHHHHh----hccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHH
Q 000169 1069 LHKWLPS-VSCIYYVG-AKDQRSRLFSQEVA----ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1069 f~KwaPs-lkVvvy~G-s~deRk~l~~qei~----~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
|.+|+|. +.++.+.+ ....+...+..... ...++|+||||+++..+...|....|++|||||||++||..++.+
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~ 212 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTY 212 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHH
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHH
Confidence 9999975 55666554 44333322222111 125789999999999998889999999999999999999999999
Q ss_pred HHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000169 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (1953)
Q Consensus 1143 raLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhk 1222 (1953)
+++..+.+.+||+|||||++|++.|||++++||.|++|++...|.++|..|+.......... .........+.+|+.
T Consensus 213 ~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~---~~~~~~~~~~~~L~~ 289 (644)
T 1z3i_X 213 LALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD---KDRAAGEQKLQELIS 289 (644)
T ss_dssp HHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS---HHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH---HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886654333222 222333445778999
Q ss_pred HhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000169 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (1953)
Q Consensus 1223 lLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLR 1302 (1953)
++.||++||++.++..+||++.+.+++|+|++.|+.+|+.+.......... ... .........++.||
T Consensus 290 ~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g-----~~~~~~l~~l~~Lr 357 (644)
T 1z3i_X 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTG-----KISVSSLSSITSLK 357 (644)
T ss_dssp HHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTT-----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcC-----ccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999886543221100 000 01234556788999
Q ss_pred HhcCCCCCCCCCc-------cc--------c-chhhhhhcccHHHHHHHHHHHHHh-cCCeeEEeechhHHHHHHHHHHH
Q 000169 1303 KTCNHPLLNYPYF-------SD--------L-SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQ 1365 (1953)
Q Consensus 1303 KiCNHP~L~~p~l-------~d--------l-s~d~Li~~SGKLelLdrIL~kLka-tGhKVLIFSQft~~LDILed~L~ 1365 (1953)
++||||.++.... .. . ........++|+.+|+.+|..+.. .++|+||||+++.++++|+.+|.
T Consensus 358 k~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~ 437 (644)
T 1z3i_X 358 KLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCR 437 (644)
T ss_dssp HHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHH
Confidence 9999998753210 00 0 011234568999999999998864 58999999999999999999999
Q ss_pred HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc
Q 000169 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (1953)
Q Consensus 1366 ~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK 1445 (1953)
..|+.|+++||+++.++|.+++++|++++...+|||+||++||+||||+.|++||+||+||||..+.||+||+||+||++
T Consensus 438 ~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 517 (644)
T 1z3i_X 438 NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517 (644)
T ss_dssp HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCS
T ss_pred HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCC
Confidence 99999999999999999999999999887777899999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhhhhhhhhhhhhhhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhccc
Q 000169 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 1514 (1953)
Q Consensus 1446 eV~VyrLvTVEEkI~s~q~EKe~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAGk 1514 (1953)
+|.||+|++ .++||++|+++ +..|..+.+.|++.+.
T Consensus 518 ~v~v~~lv~--------------------------------~~tiEe~i~~~-~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 518 TCYIYRLLS--------------------------------TGTIEEKILQR-QAHKKALSSCVVDEEQ 553 (644)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCSS
T ss_pred ceEEEEEEE--------------------------------CCCHHHHHHHH-HHHHHHHHHHHhcCcc
Confidence 999999976 37999999985 5778888887776653
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.1e-67 Score=639.06 Aligned_cols=444 Identities=29% Similarity=0.516 Sum_probs=378.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000169 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (1953)
Q Consensus 993 Ps~L~ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (1953)
|..+. .+|||||.+|+.||..++..+.||||||+||+|||+++++++..+.. .+..+++|||||.+++.||.+||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 55554 58999999999999998888899999999999999999999988874 45567999999999999999999999
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccce
Q 000169 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1152 (1953)
Q Consensus 1073 aPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~ 1152 (1953)
+|.+.+.+++|.... .....++|+||||+++.++.. +....|++|||||||+++|..+++++++..+.+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~ 179 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKY 179 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEE
T ss_pred CCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCc
Confidence 999999999887532 224578999999999987755 67789999999999999999999999999999999
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
+|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.|+++||+
T Consensus 180 ~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~ 244 (500)
T 1z63_A 180 RIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRRT 244 (500)
T ss_dssp EEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECCC
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHHHHHhhHeeeec
Confidence 9999999999999999999999999999999999999988765421 1134578899999999999
Q ss_pred Hhh--hhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1233 VED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1233 KkD--VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+.+ +...||++.+.+++|+|++.|+.+|+.+.......+.... .......+...++.||++|+||.+
T Consensus 245 k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~lr~~~~~p~l 313 (500)
T 1z63_A 245 KYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT-----------GIKRKGMILSTLLKLKQIVDHPAL 313 (500)
T ss_dssp TTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC-----------THHHHHHHHHHHHHHHHHTTCTHH
T ss_pred ccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh-----------cccchHHHHHHHHHHHHHhCCHHH
Confidence 976 6779999999999999999999999987654322111100 011234567788999999999987
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHHHHH
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqeaIer 1389 (1953)
.... ...+..++|+..|.++|.++...++|+||||+++.+++.|.++|... |+.+.+++|+++.++|.+++++
T Consensus 314 ~~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~ 387 (500)
T 1z63_A 314 LKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 387 (500)
T ss_dssp HHCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHH
T ss_pred hcCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHH
Confidence 5421 22346689999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhhhhc
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EKe~L 1469 (1953)
|+++ ..+.|||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 388 F~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~--------------- 451 (500)
T 1z63_A 388 FQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------- 451 (500)
T ss_dssp HHHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE---------------
T ss_pred hcCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe---------------
Confidence 9974 245678999999999999999999999999999999999999999999999999999976
Q ss_pred cCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000169 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1470 s~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAG 1513 (1953)
.+|+|+.|++. ...|..+.+.++..+
T Consensus 452 -----------------~~tiee~i~~~-~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 -----------------VGTLEEKIDQL-LAFKRSLFKDIISSG 477 (500)
T ss_dssp -----------------TTSHHHHTHHH-HTTCSSSSSSGGGST
T ss_pred -----------------CCCHHHHHHHH-HHHHHHHHHHHhhcC
Confidence 37899999984 577888888777764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.7e-47 Score=503.13 Aligned_cols=434 Identities=18% Similarity=0.219 Sum_probs=320.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkV 1078 (1953)
.+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||.+|+.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 48999999999999873 3567899999999999999999988875 566679999999999999999999998 6777
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCchhH---HHHHhhhc--cc
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY--RC 1150 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~~SK---lsraLk~L--~a 1150 (1953)
.+|.|........ ........++|+|+||+.+.++. ..+...+|++|||||||+++|..+. .++.+..+ .+
T Consensus 228 ~v~~~~~~~~~~~-~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAEAQH-DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHHHHH-TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhhhhh-hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 7777654332111 11122346799999999998763 3466779999999999999987654 47778777 67
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcc---------cCCC---------CC-----------
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGP---------TH----------- 1201 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~---------k~g~---------~~----------- 1201 (1953)
.++|+|||||++|++.|+|++++|+.|+.|++...|..++..... .... ..
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999999999999999999999888866421100 0000 00
Q ss_pred ----CCChhhHHHHHHHHHHHHHHHHh-----hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000169 1202 ----NADDDWLETEKKVIIIHRLHQIL-----EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (1953)
Q Consensus 1202 ----~~e~d~l~eEek~liI~RLhklL-----rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld 1272 (1953)
....... . .. ...+..++ ..+++|+.+..+ ..+|.+....+.+.+++....+|+...........
T Consensus 387 ~~~~~~~~~~~-~-~~---~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 387 QAANSDSEDAQ-S-AR---QELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp GGTCCCSSCST-T-TH---HHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hcccchhhhhH-H-HH---HHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000 0 00 01122222 234455555555 46899999999999999999998765332111110
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeec
Q 000169 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 1352 (1953)
Q Consensus 1273 ~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQ 1352 (1953)
... ...|.+|...+..+.. .....+..+.|+..|.++|.. ..+.++||||+
T Consensus 461 ~~~--------------------------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~ 511 (968)
T 3dmq_A 461 EDR--------------------------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICA 511 (968)
T ss_dssp GGG--------------------------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECS
T ss_pred HHH--------------------------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeC
Confidence 000 0011223222222111 111245567899999999987 57899999999
Q ss_pred hhHHHHHHHHHHHH-cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhH
Q 000169 1353 MTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 1431 (1953)
Q Consensus 1353 ft~~LDILed~L~~-rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d 1431 (1953)
++.+++.|..+|.. .|+++..+||+++..+|..++++|+++++.+ .+|++|+++++|||++.|++||+||+||||..|
T Consensus 512 ~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~ 590 (968)
T 3dmq_A 512 KAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLL 590 (968)
T ss_dssp STHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHH
Confidence 99999999999995 5999999999999999999999999865334 467899999999999999999999999999999
Q ss_pred HhhhhcccccCCcceEEEEEEeh---hhhhhhhhhhhhhhccCCc
Q 000169 1432 EQAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELRSGGT 1473 (1953)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT---VEEkI~s~q~EKe~Ls~gt 1473 (1953)
.|++||++|+||++.|.||+++. ++++|.....++..+....
T Consensus 591 ~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~ 635 (968)
T 3dmq_A 591 EQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHT 635 (968)
T ss_dssp HHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSC
T ss_pred HHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecC
Confidence 99999999999999999998864 6666766665554444333
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.7e-44 Score=420.97 Aligned_cols=427 Identities=18% Similarity=0.181 Sum_probs=277.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa--Psl 1076 (1953)
+|||||.+++.|++. + ++||+++||+|||++++.++..++. ...+++|||||. .|+.||..+|.+|+ +..
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 799999999999886 3 8999999999999999999888775 345689999997 69999999999998 667
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCchh--HHHHHhh-hcccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYRCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~S--KlsraLk-~L~a~ 1151 (1953)
.+.+++|........ .....++|+|+||+.+..... .+...+|++|||||||++++... .+...+. .....
T Consensus 82 ~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 82 KIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred heEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 889998876544221 123468999999999987643 45567899999999999986432 2222222 23567
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhccccc---CChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF---~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
++|+|||||. ++..+++.++.++....+ .....+...+..+........... .....+...+.+++
T Consensus 158 ~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 158 LVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP----------EIYKEVRKLLREML 226 (494)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC----------HHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc----------HHHHHHHHHHHHHH
Confidence 8999999999 777788887777755432 222111111111110000000000 01345677778888
Q ss_pred HHHHHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhc----ChhhHHHHHHHHHHHHHHHHH
Q 000169 1229 LRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK----NPIYQAKVYKTLNNRCMELRK 1303 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE-~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~k----n~~~~ak~~~sL~nilmqLRK 1303 (1953)
.++++......+..... .+-...+......++..+................... ...........+...+..|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 88877655443322211 0101111122222222221110000000000000000 000000112233344445555
Q ss_pred hcCCCCCCCC--Cccccch----------hhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCC
Q 000169 1304 TCNHPLLNYP--YFSDLSK----------DFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (1953)
Q Consensus 1304 iCNHP~L~~p--~l~dls~----------d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGi 1369 (1953)
.|.|+..... .+.+... ......++|+..|.++|..+. ..++|+||||+++.+++.|.++|...|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~ 386 (494)
T 1wp9_A 307 EAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386 (494)
T ss_dssp HHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC
Confidence 5544211000 0000000 001146789999999999876 5789999999999999999999999999
Q ss_pred eEEeecC--------CCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhccccc
Q 000169 1370 VYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1370 kylRLDG--------sTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
.+..++| +++.++|..++++|+++... +|++|+++++||||+.|++||+||++|||..++||+||++|.
T Consensus 387 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp CEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred CcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 9999999 99999999999999986544 689999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeh
Q 000169 1442 GQKREVKVIYMEA 1454 (1953)
Q Consensus 1442 GQKKeV~VyrLvT 1454 (1953)
|+ +.+|+|++
T Consensus 464 g~---g~~~~l~~ 473 (494)
T 1wp9_A 464 MP---GRVIILMA 473 (494)
T ss_dssp CC---SEEEEEEE
T ss_pred CC---ceEEEEEe
Confidence 98 56666654
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.4e-38 Score=384.76 Aligned_cols=356 Identities=19% Similarity=0.218 Sum_probs=253.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPsl 1076 (1953)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 45899999999998765 4569999999999999998887654 4689999998 7999999999995 56
Q ss_pred e-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEE
Q 000169 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1077 k-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLL 1155 (1953)
. +.+++|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+
T Consensus 159 ~~v~~~~g~~~~------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEE
T ss_pred cceEEECCCcCC------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEE
Confidence 6 7777776432 46899999999987765443 36999999999999986544 3555678889999
Q ss_pred ecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 000169 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (1953)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkD 1235 (1953)
|||||.+++..+ .. |..++.|++.++...+
T Consensus 224 lSATp~~~~~~~----------------~~----------------------------------l~~~~~~~~~~~~~~~ 253 (472)
T 2fwr_A 224 LTATFEREDGRH----------------EI----------------------------------LKEVVGGKVFELFPDS 253 (472)
T ss_dssp EESCCCCTTSGG----------------GS----------------------------------HHHHTCCEEEECCHHH
T ss_pred EecCccCCCCHH----------------HH----------------------------------HHHHhCCeEeecCHHH
Confidence 999998754211 01 1112222222222223
Q ss_pred hh-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhc-CCCCCCCC
Q 000169 1236 VE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC-NHPLLNYP 1313 (1953)
Q Consensus 1236 Ve-kdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiC-NHP~L~~p 1313 (1953)
+. ..+++.....+.+.+++.+...|..+.......+...... ......+ . .+-.++ ..+.....
T Consensus 254 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~-------~~~~~~~~~~~~~~~ 319 (472)
T 2fwr_A 254 LAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDF-----N-------KIVMASGYDERAYEA 319 (472)
T ss_dssp HTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSS-----T-------TTTTTTCCSSSSSTT
T ss_pred HhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhH-----H-------HHHHHhccCHHHHHH
Confidence 32 3477777778899999999888864422111000000000 0000000 0 000000 00000000
Q ss_pred Cc-cccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1314 YF-SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1314 ~l-~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
.. ...........+.|+..|.++|.. ..++++||||+++.+++.|.+.|. +..++|+++..+|.+++++|++
T Consensus 320 ~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 320 LRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp THHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC
Confidence 00 000011223456899999999887 568999999999999999999983 5579999999999999999998
Q ss_pred CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCc-ceEEEEEEeh
Q 000169 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (1953)
+... +|++|+++++|||++.+++||+||++||+..+.|++||++|.|+. +.|.||+|++
T Consensus 393 g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 393 GRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred CCCC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 6555 689999999999999999999999999999999999999999998 8899999976
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.1e-36 Score=371.30 Aligned_cols=428 Identities=15% Similarity=0.131 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999888877753321 5689999997 689999999999987
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--c-cccCccEEEcccccccCCchhHHHHHhhhc--
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L-- 1148 (1953)
++.+..++|........ ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 78888888876433221 12234689999999999865422 3 445789999999999987654 22222222
Q ss_pred -------ccceeEEecccCCCCCH-------HHHHHHHhhhcccc----cCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1149 -------RCQRRLLLTGTPLQNDL-------KELWSLLNLLLPEV----FDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1149 -------~a~~RLLLTGTPLQNnL-------~ELwSLLnFLlP~i----F~S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
...++|+|||||..++. ..+..+...+.... ......+..++..|................
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 236 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA- 236 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH-
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH-
Confidence 23579999999988663 33334444444332 223455666666554322111111111111
Q ss_pred HHHHHHHHHHHHHhhH----------------------HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccC
Q 000169 1211 EKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1268 (1953)
Q Consensus 1211 Eek~liI~RLhklLrP----------------------FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~ 1268 (1953)
.........++..+.. ++....+......+|. ......+|..+.....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTE 306 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHH
Confidence 1111112222222221 2222112111111111 1112222222111000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC------CCCCccccc--hhhhhhcccHHHHHHHHHHHH
Q 000169 1269 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLS--KDFLVKSCGKLWILDRILIKL 1340 (1953)
Q Consensus 1269 l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L------~~p~l~dls--~d~Li~~SGKLelLdrIL~kL 1340 (1953)
.. ........... ..........+...+..++....++.- +......+. .......++|+..|.++|...
T Consensus 307 ~l-~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~ 384 (556)
T 4a2p_A 307 HL-RKYNDALIISE-DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 384 (556)
T ss_dssp HH-HHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHH
Confidence 00 00000000000 000000011111111111110000000 000000000 000012478999999999877
Q ss_pred H--hcCCeeEEeechhHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHhhc-CCCCccEEEEecc
Q 000169 1341 Q--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIR 1405 (1953)
Q Consensus 1341 k--atGhKVLIFSQft~~LDILed~L~~r------------GikylRLDGsTs~eeRqeaIerFNs-~ds~ifVfLLSTr 1405 (1953)
. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|+. +... ||++|+
T Consensus 385 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~ 461 (556)
T 4a2p_A 385 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATS 461 (556)
T ss_dssp HHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC
T ss_pred hcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcC
Confidence 6 66899999999999999999999875 5566667788999999999999997 5444 689999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
++++|||+++|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~ 506 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 506 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 99999999999999999999999999999999 555 5666777654
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.1e-36 Score=366.00 Aligned_cols=434 Identities=13% Similarity=0.151 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.+++. +.++|++++||+|||++++.++...+..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999875 6789999999999999999988877753321 6789999998 689999999999986
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--c-cccCccEEEcccccccCCchhHHHHHhhhc--
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L-- 1148 (1953)
++.+..+.|........ ......++|+|+||+.+...... + ...+|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHH
Confidence 68888888876443221 12234689999999999875432 3 345789999999999987654 22222222
Q ss_pred --------ccceeEEecccCCCCC-------HHHHHHHHhhhccccc----CChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1149 --------RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1149 --------~a~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF----~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
...++|+|||||..++ +..++.+..++....+ .....+..++..|................
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 2246999999999887 3444444455553322 23345555555443222111111111111
Q ss_pred HHHHHHHHHHHHHHhhHHHHH--HHHhhhhcCCCCceE-----------EEEEeccCHHHHHHHHHHHHccCcccCchhH
Q 000169 1210 TEKKVIIIHRLHQILEPFMLR--RRVEDVEGSLPPKVS-----------IVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFmLR--RlKkDVekdLPpKvE-----------~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~e 1276 (1953)
......+.++..++..++-. .+.......+..... .............+|..+...... +.....
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 312 (555)
T 3tbk_A 235 -CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSH-LRKYND 312 (555)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH-HHHHHH
Confidence 11111223333333322211 000000000000000 000000000111111111000000 000000
Q ss_pred HhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC----------CCccccc--hhhhhhcccHHHHHHHHHHHHHhc-
Q 000169 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY----------PYFSDLS--KDFLVKSCGKLWILDRILIKLQRT- 1343 (1953)
Q Consensus 1277 k~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~----------p~l~dls--~d~Li~~SGKLelLdrIL~kLkat- 1343 (1953)
...+... .........+...+..+ .+..+.. .....+. .......++|+..|..+|..+...
T Consensus 313 ~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~ 387 (555)
T 3tbk_A 313 ALIISED-AQMTDALNYLKAFFHDV----REAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLK 387 (555)
T ss_dssp HHHHHHH-SCHHHHHHHHHHHHHHH----CC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhh-hhHHHHHHHHHHHHHHH----hhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccC
Confidence 0000000 00000000000111111 0000000 0000000 000112478999999999987644
Q ss_pred -CCeeEEeechhHHHHHHHHHHHHcC------------CeEEeecCCCCHHHHHHHHHHhhc-CCCCccEEEEecccccc
Q 000169 1344 -GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIRAAGR 1409 (1953)
Q Consensus 1344 -GhKVLIFSQft~~LDILed~L~~rG------------ikylRLDGsTs~eeRqeaIerFNs-~ds~ifVfLLSTrAGGe 1409 (1953)
++|+||||+++.+++.|.++|...+ ..+..+||+++.++|.+++++|++ +... +|++|+++++
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~~~ 464 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSVADE 464 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCCTTC
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcchhhc
Confidence 4999999999999999999999874 345556669999999999999997 4444 6889999999
Q ss_pred ccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1410 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1410 GLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|||++.|++||+||+||||..|+||+|| |+.+.+.+|.|++
T Consensus 465 GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 465 GIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp CEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred CCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 9999999999999999999999999999 5557777887765
No 9
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=6.9e-38 Score=359.06 Aligned_cols=235 Identities=25% Similarity=0.357 Sum_probs=175.1
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
-+||+|++|..+||++.+.+++|+||+.|+.+|+.+.......+. ... .......+.+.++.||++|+|
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~---------~~~--~~~~~~~~l~~l~~Lrq~~~h 81 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID---------SVT--GIKRKGMILSTLLKLKQIVDH 81 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT---------TCC--HHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---------hcc--ccchHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999999988654211111 000 011234577889999999999
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc-CCeEEeecCCCCHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESA 1386 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r-GikylRLDGsTs~eeRqea 1386 (1953)
|+++... ..++..++|+..|.++|..+...++||||||+++.++++|+.+|... |+.+.++||+++.++|..+
T Consensus 82 P~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 82 PALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp THHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHH
T ss_pred HHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHH
Confidence 9886421 12456799999999999999889999999999999999999999985 9999999999999999999
Q ss_pred HHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEehhhhhhhhhhhhh
Q 000169 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKED 1466 (1953)
Q Consensus 1387 IerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~EK 1466 (1953)
+++|+.+ ..++|||+||++||+||||+.|++||+||+||||..++||+||+||+||+++|.||+|++
T Consensus 156 i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~------------ 222 (271)
T 1z5z_A 156 ISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS------------ 222 (271)
T ss_dssp HHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE------------
T ss_pred HHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee------------
Confidence 9999974 346689999999999999999999999999999999999999999999999999999976
Q ss_pred hhccCCcccchhhhcccchhhhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000169 1467 ELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (1953)
Q Consensus 1467 e~Ls~gtVdleedl~gkd~yigSIEE~IlerLq~~KldIddkVIqAG 1513 (1953)
.+|||+.|++. +..|..+.+.+++.+
T Consensus 223 --------------------~~TiEe~i~~~-~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 --------------------VGTLEEKIDQL-LAFKRSLFKDIISSG 248 (271)
T ss_dssp --------------------TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred --------------------CCCHHHHHHHH-HHHHHHHHHHHHccC
Confidence 37999999984 578999999998875
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.2e-36 Score=387.68 Aligned_cols=429 Identities=15% Similarity=0.139 Sum_probs=219.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||.. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35899999999999875 6789999999999999999988887754321 67899999965 99999999999987
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cc-cccCccEEEcccccccCCchhHHHHHhhhc-
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L- 1148 (1953)
++.+..++|........ ......++|+|+||+.+..... .+ ...+|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH---HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78999998876443221 1223578999999999986542 22 344789999999999987654 22222222
Q ss_pred --------ccceeEEecccCCCCCH----------HHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1149 --------RCQRRLLLTGTPLQNDL----------KELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1149 --------~a~~RLLLTGTPLQNnL----------~ELwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
...++|+|||||.+++. .+|+..|+.- ..........+..++..|...............
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 476 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF- 476 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH-
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHH-
Confidence 22569999999987653 3344443321 112223345666776665433211111111111
Q ss_pred HHHHHHHHHHHHHHhhHHH----------------------HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000169 1210 TEKKVIIIHRLHQILEPFM----------------------LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFm----------------------LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~ 1267 (1953)
..........++.++..++ ....+......+|.. .....+|..+....
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICT 546 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHH
Confidence 1111122334444443322 111111111111111 11111121111000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC------CCCCCccccc--hhhhhhcccHHHHHHHHHHH
Q 000169 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL------LNYPYFSDLS--KDFLVKSCGKLWILDRILIK 1339 (1953)
Q Consensus 1268 ~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~------L~~p~l~dls--~d~Li~~SGKLelLdrIL~k 1339 (1953)
.. +........+. ...........+...+..++..+..+. .+......+. .......++|+..|..+|.+
T Consensus 547 ~~-l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (797)
T 4a2q_A 547 EH-LRKYNDALIIS-EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (797)
T ss_dssp HH-HHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhh-ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 00 00000000000 000000001111111111111100000 0000000000 00001247899999999987
Q ss_pred HH--hcCCeeEEeechhHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHhhc-CCCCccEEEEec
Q 000169 1340 LQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSI 1404 (1953)
Q Consensus 1340 Lk--atGhKVLIFSQft~~LDILed~L~~r------------GikylRLDGsTs~eeRqeaIerFNs-~ds~ifVfLLST 1404 (1953)
.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|++ +... |||+|
T Consensus 625 ~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT 701 (797)
T 4a2q_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIAT 701 (797)
T ss_dssp HHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEE
T ss_pred HhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEc
Confidence 54 56799999999999999999999873 6667778899999999999999997 5544 78999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+++++||||+.|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 999999999999999999999999999999999 565 6667777754
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.7e-35 Score=388.47 Aligned_cols=414 Identities=16% Similarity=0.166 Sum_probs=221.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~GP~LIVVP~S-LL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.|++. +.++||+++||+|||++++.++..++.... ..+++|||||+. |+.||..+|.+|++
T Consensus 247 ~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 247 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4899999999999975 678999999999999999888876654322 167899999965 99999999999987
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--c-cccCccEEEcccccccCCchhHHHHHhhhc--
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L-~kikWd~VIIDEAHrLKN~~SKlsraLk~L-- 1148 (1953)
++.+.+++|........ ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 323 ~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHH---HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 78899998876443221 12234689999999999875422 2 334689999999999987654 33333332
Q ss_pred -------ccceeEEecccCCCCCHHH----------HHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1149 -------RCQRRLLLTGTPLQNDLKE----------LWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1149 -------~a~~RLLLTGTPLQNnL~E----------LwSLLnFL-lP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
...++|+|||||.+++..+ ||.+|+.- ..........+..++..|................
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~- 477 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA- 477 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH-
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH-
Confidence 2256999999998865433 33333321 1112233456666666554332111111111111
Q ss_pred HHHHHHHHHHHHHhhH----------------------HHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccC
Q 000169 1211 EKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1268 (1953)
Q Consensus 1211 Eek~liI~RLhklLrP----------------------FmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~ 1268 (1953)
.........++.++.. ++....+......+|... ....+|..+.....
T Consensus 478 ~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~----------~~~~~~~~l~~~~~ 547 (936)
T 4a2w_A 478 AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICTE 547 (936)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHHH
Confidence 1111112233333222 222222221222222211 11111111100000
Q ss_pred cccCchhHHhhhh----------------------cChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhc
Q 000169 1269 LRVDPEDEKRRVQ----------------------KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKS 1326 (1953)
Q Consensus 1269 l~ld~~~ek~~l~----------------------kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~ 1326 (1953)
. +........+. ............+...+..|...+..|. ..
T Consensus 548 ~-l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~---------------~~ 611 (936)
T 4a2w_A 548 H-LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET---------------NE 611 (936)
T ss_dssp H-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTT---------------CC
T ss_pred H-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccC---------------CC
Confidence 0 00000000000 0000000011111122223333332221 24
Q ss_pred ccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc------------CCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1327 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1327 SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r------------GikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
++|+..|..+|.... ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+.
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~ 691 (936)
T 4a2w_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (936)
T ss_dssp CHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc
Confidence 789999999998864 56799999999999999999999987 5566667888999999999999997
Q ss_pred -CCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1393 -HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1393 -~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
+..+ |||+|+++++||||+.|++||+||+|||+..|+||+|| +|. +++.||.|++
T Consensus 692 ~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~ 747 (936)
T 4a2w_A 692 SKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (936)
T ss_dssp --CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred cCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEe
Confidence 5444 78999999999999999999999999999999999999 554 6666777654
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=7.5e-34 Score=358.79 Aligned_cols=420 Identities=17% Similarity=0.183 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~KwaP- 1074 (1953)
.+|+|||.+++.|++. +.++|++++||+|||++++.++...+...+. .+++|||||+ .|+.||..+|.++++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4899999999999986 7789999999999999999888876654322 2789999997 699999999999997
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cc-cccCccEEEcccccccCCchhHHHHH---hhh
Q 000169 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARD---LDR 1147 (1953)
Q Consensus 1075 -slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L-~kikWd~VIIDEAHrLKN~~SKlsra---Lk~ 1147 (1953)
++.+..+.|+...+... .......+|+|+||+.+.+... .+ ...+|++|||||||++.+...-.... +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~ 164 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPV---EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 164 (696)
T ss_dssp TTCCEEEECSSSCSSSCH---HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccH---HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHH
Confidence 68888888875433221 1122468999999999987643 23 44578999999999998765322221 111
Q ss_pred -c-----ccceeEEecccCCCCC-------HHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000169 1148 -Y-----RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (1953)
Q Consensus 1148 -L-----~a~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF~----S~k~F~e~F~kPf~k~g~~~~~e~d~l~e 1210 (1953)
+ ...++|+|||||..++ +..++.++..+....+. .......++..|.................
T Consensus 165 ~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~ 244 (696)
T 2ykg_A 165 KLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 244 (696)
T ss_dssp HHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHH
T ss_pred hhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHH
Confidence 1 3467999999998544 45566666555544332 22334444444421110000000000000
Q ss_pred HHHHHHHHHHHHHh-----------------------hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000169 1211 EKKVIIIHRLHQIL-----------------------EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (1953)
Q Consensus 1211 Eek~liI~RLhklL-----------------------rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~ 1267 (1953)
.-......+..+. .++++++.+......+|.+.... ..-..++.....-.
T Consensus 245 -~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 245 -IIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES------RICKALFLYTSHLR 317 (696)
T ss_dssp -HHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH------HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh------HHHHHHHHHHHHHH
Confidence 0000001111111 11222222222222222221100 00001111000000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhh-----------------hhcccHH
Q 000169 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-----------------VKSCGKL 1330 (1953)
Q Consensus 1268 ~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~L-----------------i~~SGKL 1330 (1953)
.......+... .........+...+..++... ........+ ...+.|+
T Consensus 318 -----~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~ 382 (696)
T 2ykg_A 318 -----KYNDALIISEH-ARMKDALDYLKDFFSNVRAAG---------FDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 382 (696)
T ss_dssp -----HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHH
T ss_pred -----HHhHHHhccch-hhHHHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 00000000000 000000111111111111000 000000000 0246799
Q ss_pred HHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcC----CeEEeecC--------CCCHHHHHHHHHHhhc-CCC
Q 000169 1331 WILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFNS-HDS 1395 (1953)
Q Consensus 1331 elLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rG----ikylRLDG--------sTs~eeRqeaIerFNs-~ds 1395 (1953)
..|..+|.... ..+.++||||+++.+++.|.++|...| +++..++| +++.++|.+++++|+. +..
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~ 462 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 462 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCc
Confidence 99999998764 357899999999999999999999998 89999955 9999999999999996 555
Q ss_pred CccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1396 ~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
. +|++|+++++|||++++++||+||+|||+..|+||+|| +|. +...++.|++
T Consensus 463 ~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 463 N---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp S---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred c---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 5 58999999999999999999999999999999999999 886 4455566544
No 13
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-33 Score=345.37 Aligned_cols=337 Identities=13% Similarity=0.136 Sum_probs=244.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH--CCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW--LPSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw--aPsl 1076 (1953)
+|+|||.+++.+++. +.++||+++||+|||++++.++..++.. ..+++|||||. .|+.||.++|.+| ++..
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999886 4679999999999999998888776652 23599999997 5889999999999 5667
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeEE
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1155 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RLL 1155 (1953)
.+..+.|....... .....+|+|+||+.+.+.... ...+|++|||||||++.+. .....+..+ .+.++|+
T Consensus 187 ~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 187 MIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (510)
T ss_dssp GEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEE
T ss_pred ceEEEecCCccccc------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEE
Confidence 78777776443321 245789999999998876332 2247899999999999863 344555666 5678999
Q ss_pred ecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 000169 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (1953)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkD 1235 (1953)
||||| .+...++|++..++.+.++.. + .. + ..
T Consensus 258 lSATp-~~~~~~~~~~~~~~~~~~~~~----------~-----~~---~---~~-------------------------- 289 (510)
T 2oca_A 258 LSGSL-RDGKANIMQYVGMFGEIFKPV----------T-----TS---K---LM-------------------------- 289 (510)
T ss_dssp EESCG-GGCSSCHHHHHHHHCSEECCC----------C-----CC-----------------------------------
T ss_pred EEeCC-CCCcccHHHhHHhhCCeEEee----------C-----HH---H---Hh--------------------------
Confidence 99999 555556777776665543210 0 00 0 00
Q ss_pred hhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 000169 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (1953)
Q Consensus 1236 VekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l 1315 (1953)
-...+++.....+.+.++........ + ..+ .. .+..+
T Consensus 290 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~-----~~------~~~~~----------- 326 (510)
T 2oca_A 290 EDGQVTELKINSIFLRYPDEFTTKLK-----G----------------KTY-----QE------EIKII----------- 326 (510)
T ss_dssp ------CCEEEEEEEECCHHHHHHHT-----T----------------CCH-----HH------HHHHH-----------
T ss_pred hCCcCCCceEEEEeecCChHHhcccc-----c----------------cch-----HH------HHHHH-----------
Confidence 00135666666677776654331100 0 000 00 01111
Q ss_pred cccchhhhhhcccHHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCC
Q 000169 1316 SDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394 (1953)
Q Consensus 1316 ~dls~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~d 1394 (1953)
+....|...+..++..+... +.++||||. +..++.|.++|...+..+..+||+++.++|.++++.|++++
T Consensus 327 --------~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~ 397 (510)
T 2oca_A 327 --------TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK 397 (510)
T ss_dssp --------HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC
T ss_pred --------hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 11223555566666665444 556777777 88888899999999899999999999999999999999755
Q ss_pred CCccEEEEec-cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcc-eEEEEEEeh
Q 000169 1395 SDCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (1953)
Q Consensus 1395 s~ifVfLLST-rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (1953)
.. +|++| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.++.
T Consensus 398 ~~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 398 GI---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp SC---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred CC---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 44 67777 99999999999999999999999999999999999999997 688888754
No 14
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=354.99 Aligned_cols=395 Identities=17% Similarity=0.228 Sum_probs=233.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHHH-HHHHHHHC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVNW-KSELHKWL 1073 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~QW-~~Ef~Kwa 1073 (1953)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||+. |+.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999986 67899999999999999999887766432 3347899999975 88999 99999999
Q ss_pred CC-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--------hcccccCccEEEcccccccCCchh---HH
Q 000169 1074 PS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRES---VL 1141 (1953)
Q Consensus 1074 Ps-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--------s~L~kikWd~VIIDEAHrLKN~~S---Kl 1141 (1953)
+. +.+..+.|........ .......+|+|+||+.+.... ..+....|++|||||||++.+... ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCH---HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHH---HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 87 8899888876543221 122367899999999998643 234456899999999999854221 11
Q ss_pred HHHhhh-c-------------ccceeEEecccCCCCC-------HHHHHHHHhhhcc-ccc---CChHHHHhhhcCCccc
Q 000169 1142 ARDLDR-Y-------------RCQRRLLLTGTPLQND-------LKELWSLLNLLLP-EVF---DNRKAFHDWFSQPFQK 1196 (1953)
Q Consensus 1142 sraLk~-L-------------~a~~RLLLTGTPLQNn-------L~ELwSLLnFLlP-~iF---~S~k~F~e~F~kPf~k 1196 (1953)
...+.. + ....+|+|||||..++ ..++..++..+.+ .+. .....+..++..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 112211 1 4457999999999863 3344445555555 222 1224455555444322
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHH-H---HHc----cC
Q 000169 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-I---KAT----GT 1268 (1953)
Q Consensus 1197 ~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~-I---~~~----~~ 1268 (1953)
............ ...+..+...+..++ ++-+.. .+. ...|.. + ... ..
T Consensus 239 ~~~~~~~~~~~~-----~~~l~~l~~~i~~~~----------~~~~~~------~~g---~~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 239 FAIADATREDPF-----KEKLLEIMTRIQTYC----------QMSPMS------DFG---TQPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp EEEEC-----CH-----HHHHHHHHHHHHHHH----------TCCCCS------CSS---SHHHHHHHHHHHHHHHHHTC
T ss_pred EEEcccccCChH-----HHHHHHHHHHHHHHh----------ccCcch------hcc---chHHHHHHHHHHHHHHHhhh
Confidence 111000000000 001111211111111 010000 000 001110 0 000 00
Q ss_pred cccCchhHHhhhh------cChhhHHHHHHHHHHHHH------------------------------------HHHHhcC
Q 000169 1269 LRVDPEDEKRRVQ------KNPIYQAKVYKTLNNRCM------------------------------------ELRKTCN 1306 (1953)
Q Consensus 1269 l~ld~~~ek~~l~------kn~~~~ak~~~sL~nilm------------------------------------qLRKiCN 1306 (1953)
............. .........+..+...+. .|..++.
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000000000011111111 1111111
Q ss_pred CCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhc---CCeeEEeechhHHHHHHHHHHHHc------CCeEEeecCC
Q 000169 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT 1377 (1953)
Q Consensus 1307 HP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkat---GhKVLIFSQft~~LDILed~L~~r------GikylRLDGs 1377 (1953)
.+. ..+.|+..|..+|...... +.++||||+++.+++.|.++|... |+.+..+||+
T Consensus 375 ~~~---------------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~ 439 (699)
T 4gl2_A 375 NPE---------------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 439 (699)
T ss_dssp CCC-------------------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCS
T ss_pred cCC---------------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECC
Confidence 110 1345777777777765433 789999999999999999999987 9999999999
Q ss_pred --------CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1378 --------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1378 --------Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
++..+|.+++++|+.++.+ ||++|+++++|||++.+++||+||+|||+..|+|++|||+|-|
T Consensus 440 ~~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 440 GHSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999976555 6899999999999999999999999999999999999986655
No 15
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.1e-31 Score=311.07 Aligned_cols=316 Identities=16% Similarity=0.166 Sum_probs=225.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa---Ps 1075 (1953)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .|+.||..++.+|. |+
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998876 67899999999999999877776654323344589999997 58899999999986 57
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh---HHHHHhhhcc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR- 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S---KlsraLk~L~- 1149 (1953)
+.+.++.|........ ........+|+|+||+.+.... ..+...+|++|||||||++.+... .+...+..+.
T Consensus 106 ~~~~~~~g~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 8888888875543221 1233456799999999997643 223445799999999999976322 1222222332
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
...+++|||||-.. ..++. ..++..|........
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~~~~~~~~---------------------------- 217 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVC-----------------RKFMQDPMEIFVDDE---------------------------- 217 (391)
T ss_dssp SSEEEEEESSCCST-HHHHH-----------------HHHCSSCEEEECCCC----------------------------
T ss_pred CceEEEEEeeCCHH-HHHHH-----------------HHHcCCCeEEEecCc----------------------------
Confidence 45689999998432 11110 111111110000000
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
....+.......+.+
T Consensus 218 ------~~~~~~~~~~~~~~~----------------------------------------------------------- 232 (391)
T 1xti_A 218 ------TKLTLHGLQQYYVKL----------------------------------------------------------- 232 (391)
T ss_dssp ------CCCCCTTCEEEEEEC-----------------------------------------------------------
T ss_pred ------cccCcccceEEEEEc-----------------------------------------------------------
Confidence 000000000111110
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHH
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIer 1389 (1953)
....|...|..++... .+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.
T Consensus 233 ---------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 295 (391)
T 1xti_A 233 ---------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 295 (391)
T ss_dssp ---------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ---------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1123444555555543 67899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1390 FNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
|++++.. +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.++.-
T Consensus 296 f~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 296 FKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HHTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred HhcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 9976555 78999999999999999999999999999999999999999998888877654
No 16
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.1e-33 Score=344.84 Aligned_cols=354 Identities=15% Similarity=0.152 Sum_probs=218.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEec-hHHHHHHH-HH
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVP-NAVLVNWK-SE 1068 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lle~k------g~~GP~LIVVP-~SLL~QW~-~E 1068 (1953)
+..|||||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3489999999999999876654 5589999999999999999888887532 15678999999 55889999 78
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh------hcccccCccEEEcccccccCCch-hHH
Q 000169 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SVL 1141 (1953)
Q Consensus 1069 f~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~------s~L~kikWd~VIIDEAHrLKN~~-SKl 1141 (1953)
|..|.+.+. .+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.. +.+
T Consensus 256 ~~~~~~~~~--~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDARH--KIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSSEE--ECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchhhh--hhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 887765322 22221 12346799999999987642 33445579999999999998653 344
Q ss_pred HHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000169 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (1953)
Q Consensus 1142 sraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLh 1221 (1953)
...+..+...++|+|||||..+...+++.++. .++.... +.
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~---------------------~~ 363 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS---------------------LR 363 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---------------------HH
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---------------------HH
Confidence 45556677788999999999887766555432 1111110 00
Q ss_pred HHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1222 klLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
..+ .+ ..+++.....+.+....................+ ..
T Consensus 364 ~~i---------~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------ 404 (590)
T 3h1t_A 364 QGI---------DD--GFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI----------PD------------------ 404 (590)
T ss_dssp HHH---------HH--TSSCCEEEEEEEETTCC-----------------------------------------------
T ss_pred HHh---------hC--CccCCcEEEEeeeeeecccccccccccccccccc----------cc------------------
Confidence 000 00 1233333333333322111111000000000000 00
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH---hcCCeeEEeechhHHHHHHHHHHHHcCCe--------
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ---RTGHRVLLFSTMTKLLDILEEYLQWRQLV-------- 1370 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk---atGhKVLIFSQft~~LDILed~L~~rGik-------- 1370 (1953)
..+........+....+...+.+.|..+. ..+.|+||||+.+.+++.|.+.|...+..
T Consensus 405 -----------~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 405 -----------GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred -----------ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 00000000111111222333333332221 34689999999999999999999876543
Q ss_pred EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCC---cceE
Q 000169 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREV 1447 (1953)
Q Consensus 1371 ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQ---KKeV 1447 (1953)
+..++|.++ ++|..++++|++++.++.++|++|+++++|||++.+++||+|+++||+..|+|++||++|+|. +..+
T Consensus 474 ~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~ 552 (590)
T 3h1t_A 474 VARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWF 552 (590)
T ss_dssp EEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCE
T ss_pred EEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEE
Confidence 678999986 479999999998887888999999999999999999999999999999999999999999995 6678
Q ss_pred EEEEEeh
Q 000169 1448 KVIYMEA 1454 (1953)
Q Consensus 1448 ~VyrLvT 1454 (1953)
.||.++.
T Consensus 553 ~I~D~~g 559 (590)
T 3h1t_A 553 NIIDYTG 559 (590)
T ss_dssp EEEECSS
T ss_pred EEEecCC
Confidence 9999873
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.98 E-value=5.2e-31 Score=309.61 Aligned_cols=312 Identities=17% Similarity=0.186 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. |+.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999886 677999999999999988777766543333455899999975 78899999999986 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh-HHHH-Hhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S-Klsr-aLk~L~-a~ 1151 (1953)
.+..+.|......... ......+|+|+|++.+.... ..+...+|++|||||||++.+... .... .+..+. ..
T Consensus 119 ~~~~~~g~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDIL---RLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp CEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEEEeCCcchHHHHH---HhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 7777777665443321 22457899999999986543 223345789999999999876432 2222 222332 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..++||||+-. .+..+ +..++..|+.....
T Consensus 196 ~~i~lSAT~~~----~~~~~--------------~~~~~~~~~~~~~~-------------------------------- 225 (400)
T 1s2m_A 196 QSLLFSATFPL----TVKEF--------------MVKHLHKPYEINLM-------------------------------- 225 (400)
T ss_dssp EEEEEESCCCH----HHHHH--------------HHHHCSSCEEESCC--------------------------------
T ss_pred eEEEEEecCCH----HHHHH--------------HHHHcCCCeEEEec--------------------------------
Confidence 68999999621 11110 01111111100000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.. ...+........
T Consensus 226 --~~--~~~~~~~~~~~~-------------------------------------------------------------- 239 (400)
T 1s2m_A 226 --EE--LTLKGITQYYAF-------------------------------------------------------------- 239 (400)
T ss_dssp --SS--CBCTTEEEEEEE--------------------------------------------------------------
T ss_pred --cc--cccCCceeEEEE--------------------------------------------------------------
Confidence 00 000000000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
+....|+..|..++.. ..+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.|+
T Consensus 240 ------------~~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 305 (400)
T 1s2m_A 240 ------------VEERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR 305 (400)
T ss_dssp ------------CCGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------echhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh
Confidence 0112355555566554 25679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++... +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.+++
T Consensus 306 ~g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 306 QGKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp TTSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 76554 7899999999999999999999999999999999999999999887776654
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.9e-31 Score=305.48 Aligned_cols=307 Identities=20% Similarity=0.253 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
+|+|||.+++.+++. .+.++|++.+||+|||++++..+..++. .....++|||||.. |+.||.+++.++++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999998875 2357899999999999998877766553 23456899999975 78999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCch--hHHHHHhhhc-ccc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L-~a~ 1151 (1953)
.+..+.|........ ......+|+|+||+.+..... .+...+|++|||||||++.+.. ..+...+..+ ...
T Consensus 104 ~v~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQI----KALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CEEEECTTSCHHHHH----HHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred eEEEEECCcchHHHH----hhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 677777765443322 122368999999999876532 2334578999999999987644 2233334444 345
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
+.++|||||... +..++. .++..+..
T Consensus 180 ~~i~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------------ 205 (367)
T 1hv8_A 180 RILLFSATMPRE----ILNLAK--------------KYMGDYSF------------------------------------ 205 (367)
T ss_dssp EEEEECSSCCHH----HHHHHH--------------HHCCSEEE------------------------------------
T ss_pred eEEEEeeccCHH----HHHHHH--------------HHcCCCeE------------------------------------
Confidence 689999999321 111110 01100000
Q ss_pred HHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1232 RVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1232 lKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+....+... ...+.+
T Consensus 206 ----~~~~~~~~~~~~~~~~------------------------------------------------------------ 221 (367)
T 1hv8_A 206 ----IKAKINANIEQSYVEV------------------------------------------------------------ 221 (367)
T ss_dssp ----EECCSSSSSEEEEEEC------------------------------------------------------------
T ss_pred ----EEecCCCCceEEEEEe------------------------------------------------------------
Confidence 000000000 000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
....|+..|..++. ..+.++||||.....++.+.++|...|+.+..+||+++.++|..+++.|
T Consensus 222 --------------~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 222 --------------NENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp --------------CGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 01123344444333 5678999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+++... +|++|+++++|+|++.+++||+||++||+..+.|++||++|.|++..|.++..
T Consensus 285 ~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 285 KQKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp HTTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred HcCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 976544 78999999999999999999999999999999999999999999988877653
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=1.7e-30 Score=306.81 Aligned_cols=315 Identities=18% Similarity=0.214 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
+|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. |+.||.+++.+|.. .+
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 699999999999886 678999999999999998877766553334557899999976 88999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a~ 1151 (1953)
.+..+.|......... ......+|+|+||+.+.... ..+....|++|||||||++.+.. ..+...+..+. ..
T Consensus 135 ~~~~~~g~~~~~~~~~---~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIR---KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred EEEEEECCCCHHHHHH---HhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 6667777654433221 22346799999999987543 23445579999999999987654 23334444443 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..+++||||-. ++..++. .++..|.....
T Consensus 212 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~--------------------------------- 240 (410)
T 2j0s_A 212 QVVLISATLPH----EILEMTN--------------KFMTDPIRILV--------------------------------- 240 (410)
T ss_dssp EEEEEESCCCH----HHHTTGG--------------GTCSSCEEECC---------------------------------
T ss_pred eEEEEEcCCCH----HHHHHHH--------------HHcCCCEEEEe---------------------------------
Confidence 68999999832 1111111 01111110000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
......++......+.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 258 (410)
T 2j0s_A 241 --KRDELTLEGIKQFFVAVE------------------------------------------------------------ 258 (410)
T ss_dssp --CGGGCSCTTEEEEEEEES------------------------------------------------------------
T ss_pred --cCccccCCCceEEEEEeC------------------------------------------------------------
Confidence 000000111111111111
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
....|+..|..++... ...++||||+....++.|.++|...|+.+..+||+++..+|..+++.|+
T Consensus 259 -------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (410)
T 2j0s_A 259 -------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 (410)
T ss_dssp -------------STTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred -------------cHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH
Confidence 0012444555555543 3569999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++.+++||+||++|++..|+|++||++|.|++..|.++.-
T Consensus 324 ~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 324 SGASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp HTSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 86655 78999999999999999999999999999999999999999998887766653
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=6.5e-31 Score=309.09 Aligned_cols=316 Identities=19% Similarity=0.232 Sum_probs=213.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.++|||.+++.+++. +.++|++.+||+|||++++..+...+......+++|||||.. |+.||.+++.+++. .+
T Consensus 62 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 799999999988886 677999999999999998777766554344566899999976 88999999999873 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ ........+|+|+|++.+.... ..+....|++|||||||++.+.. ..+...+..+. ..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 138 SCHACIGGTNVRAEV--QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CEEECCCCTTHHHHH--HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEECCcchHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 666666655443332 1233467899999999987653 23444568999999999986433 34455555553 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..++|||||-. ++..++. .++..+........
T Consensus 216 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~~~------------------------------ 247 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTK--------------KFMRDPIRILVKKE------------------------------ 247 (414)
T ss_dssp EEEEECSCCCH----HHHHHHT--------------TTCSSCEEECCCCC------------------------------
T ss_pred eEEEEEEecCH----HHHHHHH--------------HHcCCCEEEEecCC------------------------------
Confidence 68999999821 1111111 00111100000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
. ...+...... ..
T Consensus 248 ---~--~~~~~~~~~~--------------------------------------------------------------~~ 260 (414)
T 3eiq_A 248 ---E--LTLEGIRQFY--------------------------------------------------------------IN 260 (414)
T ss_dssp ---C--CCTTSCCEEE--------------------------------------------------------------EE
T ss_pred ---c--cCCCCceEEE--------------------------------------------------------------EE
Confidence 0 0000000000 00
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
......|+..|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 261 -----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~ 327 (414)
T 3eiq_A 261 -----------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFR 327 (414)
T ss_dssp -----------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHS
T ss_pred -----------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHH
Confidence 001123666666666543 5679999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.+++.
T Consensus 328 ~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 328 SGSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp CC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred cCCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 75544 79999999999999999999999999999999999999999998887766553
No 21
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=3.4e-31 Score=309.67 Aligned_cols=202 Identities=17% Similarity=0.208 Sum_probs=152.6
Q ss_pred CCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-cc-
Q 000169 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-SD- 1317 (1953)
Q Consensus 1240 LPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p~l-~d- 1317 (1953)
.|++.|+++.|.||+.|+.+|+.+.......+ .................+.+.+|+||+|||||+|+...+ ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999865321111 111111111112335688999999999999999985322 11
Q ss_pred ----cchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1318 ----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1318 ----ls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
...+.++..||||.+|+++|..+++.+|||||||||+.++|+|+++|..+|+.|+|+||++... +.+ ..
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------AN 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------cc
Confidence 1245678899999999999999999999999999999999999999999999999999996543 222 12
Q ss_pred CCCccEEEEeccccccccC-----CccCCeEEEcCCCCCchhH-Hhhhhccccc--CCcceEEEEEEeh
Q 000169 1394 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 1454 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGGeGLN-----LQaADtVIifDppWNP~~d-~QAiGRAhRI--GQKKeV~VyrLvT 1454 (1953)
++.++|||+ |++||.|+| |.+||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 457888887 568888886 8999999999999999998 9999999999 7899999999987
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=9.7e-30 Score=295.73 Aligned_cols=313 Identities=15% Similarity=0.169 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||.. |+.||.+++.++.. .+
T Consensus 27 ~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 27 KPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp SCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 7999999999988752 2378899999999999998877766554344566899999976 88999999999874 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCchh--HHHHHhh-hcc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYR-C 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~S--KlsraLk-~L~-a 1150 (1953)
.+..+.+..... ......+|+|+|++.+.... ..+...+|++|||||||++.+... .....+. .+. .
T Consensus 105 ~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
T 3pey_A 105 TSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177 (395)
T ss_dssp CEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTT
T ss_pred eEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCC
Confidence 555555543322 12346899999999987653 233445799999999999865221 2222222 332 3
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
...++|||||-. .+..++..+ +..+.... . .
T Consensus 178 ~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~-~----~-------------------------- 208 (395)
T 3pey_A 178 TQLVLFSATFAD----AVRQYAKKI--------------VPNANTLE-L----Q-------------------------- 208 (395)
T ss_dssp CEEEEEESCCCH----HHHHHHHHH--------------SCSCEEEC-C----C--------------------------
T ss_pred cEEEEEEecCCH----HHHHHHHHh--------------CCCCeEEE-c----c--------------------------
Confidence 468999999831 111111110 00000000 0 0
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
... ...+......+.+
T Consensus 209 --~~~--~~~~~~~~~~~~~------------------------------------------------------------ 224 (395)
T 3pey_A 209 --TNE--VNVDAIKQLYMDC------------------------------------------------------------ 224 (395)
T ss_dssp --GGG--CSCTTEEEEEEEC------------------------------------------------------------
T ss_pred --ccc--cccccccEEEEEc------------------------------------------------------------
Confidence 000 0000000000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHh
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerF 1390 (1953)
.....|+..|..++.. ..+.++||||+....++.+.++|...++.+..+||+++.++|..+++.|
T Consensus 225 -------------~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 289 (395)
T 3pey_A 225 -------------KNEADKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289 (395)
T ss_dssp -------------SSHHHHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred -------------CchHHHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 0012344555555443 2568999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEeccccccccCCccCCeEEEcCCCC------CchhHHhhhhcccccCCcceEEEEEE
Q 000169 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1391 Ns~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW------NP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+++... +|++|+++++|||++.+++||+||+|| |+..|+|++||++|.|++..+.++..
T Consensus 290 ~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 290 REGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp HTTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HCCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 976555 799999999999999999999999999 99999999999999998888777664
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.5e-29 Score=288.55 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=209.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++.++.. +.++|++++||+|||++++..+... ..++|||||.. |+.||.+++.+|.+ +.
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999885 6789999999999999887666432 45899999974 88999999999875 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhcccc-
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRCQ- 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~a~- 1151 (1953)
.+..+.|........ ......+|+|+||+.+.+.. ..+...+|++|||||||++.+.. ..+...+..+...
T Consensus 86 ~~~~~~~~~~~~~~~----~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQI----NRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CEEEECTTSCHHHHH----HHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred cEEEEECCcchHHHH----hhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 777777765443221 12235899999999997643 23344578999999999986533 2333334444433
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..+++||||-.. +..++ ..++..+....
T Consensus 162 ~~~~~SAT~~~~----~~~~~--------------~~~~~~~~~~~---------------------------------- 189 (337)
T 2z0m_A 162 ITGLFSATIPEE----IRKVV--------------KDFITNYEEIE---------------------------------- 189 (337)
T ss_dssp EEEEEESCCCHH----HHHHH--------------HHHSCSCEEEE----------------------------------
T ss_pred EEEEEeCcCCHH----HHHHH--------------HHhcCCceeee----------------------------------
Confidence 456789998321 11111 11111100000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
.. ..++......+.+...
T Consensus 190 --~~--~~~~~~~~~~~~~~~~---------------------------------------------------------- 207 (337)
T 2z0m_A 190 --AC--IGLANVEHKFVHVKDD---------------------------------------------------------- 207 (337)
T ss_dssp --CS--GGGGGEEEEEEECSSS----------------------------------------------------------
T ss_pred --cc--cccCCceEEEEEeChH----------------------------------------------------------
Confidence 00 0000000111111000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
.......+. ...+.++||||+....++.+.+.|. .+..+||+++..+|.+++++|+
T Consensus 208 ------------------~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 208 ------------------WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp ------------------SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHH
Confidence 000001111 1357889999999999999998886 6788999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++.+++||+||++||+..+.|++||++|.|++..|.+|..
T Consensus 264 ~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 264 EGEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TTSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 76555 78999999999999999999999999999999999999999999988888765
No 24
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=7.2e-29 Score=299.39 Aligned_cols=312 Identities=18% Similarity=0.214 Sum_probs=220.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-----~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
+++|+|..++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||.+++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999998875 788999999999999988776655443322 245799999986 8899999999998
Q ss_pred C--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhh
Q 000169 1074 P--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (1953)
Q Consensus 1074 P--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~ 1147 (1953)
. .+++.+++|+....... .......+|+|+|++.+.... ..+...++++|||||||++.+.. ..+...+..
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQN---ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred ccCCcEEEEEECCCCHHHHH---HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 4 46666666665443222 122357899999999997653 23344578999999999987643 233444443
Q ss_pred c---ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000169 1148 Y---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (1953)
Q Consensus 1148 L---~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklL 1224 (1953)
+ .....+++|||+- .++..+.... +..+.....
T Consensus 231 ~~~~~~~q~l~~SAT~~----~~~~~~~~~~--------------l~~~~~i~~-------------------------- 266 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP----EEIQRMAGEF--------------LKNYVFVAI-------------------------- 266 (434)
T ss_dssp TTSCSSCEEEEEESCCC----HHHHHHHHTT--------------CSSCEEEEE--------------------------
T ss_pred cCCCCCceEEEEeccCC----HHHHHHHHHh--------------ccCCEEEEe--------------------------
Confidence 3 3456899999972 1222111100 000000000
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHh
Q 000169 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (1953)
Q Consensus 1225 rPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKi 1304 (1953)
..+....+.....++.|
T Consensus 267 ---------~~~~~~~~~i~~~~~~~------------------------------------------------------ 283 (434)
T 2db3_A 267 ---------GIVGGACSDVKQTIYEV------------------------------------------------------ 283 (434)
T ss_dssp ---------SSTTCCCTTEEEEEEEC------------------------------------------------------
T ss_pred ---------ccccccccccceEEEEe------------------------------------------------------
Confidence 00000000000111111
Q ss_pred cCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHH
Q 000169 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (1953)
Q Consensus 1305 CNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRq 1384 (1953)
....|...|..+|.. .+.++||||+....++.|.++|...|+.+..+||+++..+|.
T Consensus 284 --------------------~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 284 --------------------NKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340 (434)
T ss_dssp --------------------CGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 112244444444443 445699999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1385 eaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.++++|+++... +|++|+++++|||++.+++||+||+||++..|+||+||++|.|++..+.+|+
T Consensus 341 ~~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 341 QALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 999999976655 7999999999999999999999999999999999999999999988877664
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1.4e-30 Score=303.69 Aligned_cols=313 Identities=15% Similarity=0.184 Sum_probs=116.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP--sl 1076 (1953)
+|+|||.+++.+++. +.++|++++||+|||++++..+...+......+++|||||. .|+.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 43 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999999887 67899999999999999776665554333455689999997 488999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ ......+|+|+|++.+.... ..+...+|++|||||||++.+. ...+...+..+. ..
T Consensus 119 ~~~~~~g~~~~~~~~----~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 119 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp CEEEECSSCCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCCchHHHH----hhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 777777765443221 11236899999999987653 2344457999999999998543 233444444443 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
.+++|||||-. ++..++ ..++..|+.
T Consensus 195 ~~i~~SAT~~~----~~~~~~--------------~~~~~~~~~------------------------------------ 220 (394)
T 1fuu_A 195 QVVLLSATMPN----DVLEVT--------------TKFMRNPVR------------------------------------ 220 (394)
T ss_dssp EEEEECSSCCH----HHHHHH--------------HHHCCSCEE------------------------------------
T ss_pred eEEEEEEecCH----HHHHHH--------------HHhcCCCeE------------------------------------
Confidence 68999999832 111110 111111100
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
. .+.-.. .. ...+ . .....+
T Consensus 221 --------------~--~~~~~~--~~-~~~~-------------------------------~----~~~~~~------ 240 (394)
T 1fuu_A 221 --------------I--LVKKDE--LT-LEGI-------------------------------K----QFYVNV------ 240 (394)
T ss_dssp --------------E--EECC-----------------------------------------------------------
T ss_pred --------------E--EecCcc--cc-CCCc-------------------------------e----EEEEEc------
Confidence 0 000000 00 0000 0 000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
.....|...|..++... .+.++||||.....++.+.+.|...++.+..+||+++.++|..+++.|+
T Consensus 241 ------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 306 (394)
T 1fuu_A 241 ------------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFR 306 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 00012444555555543 4579999999999999999999999999999999999999999999998
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++... +|++|+++++|||++.+++||+||++|++..|.|++||++|.|++..|.+++
T Consensus 307 ~~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 307 SGSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred CCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 75544 7899999999999999999999999999999999999999999888776654
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.7e-28 Score=289.31 Aligned_cols=314 Identities=22% Similarity=0.264 Sum_probs=217.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC------------------CCCeEEEechH-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN------------------YGPHLIIVPNA- 1060 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~------------------~GP~LIVVP~S- 1060 (1953)
.|+|+|.+++..+.. +.+.|++.+||+|||++++..+...+...+. ...+|||||..
T Consensus 37 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 37 RPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 799999999987765 7789999999999999876655543322221 24689999975
Q ss_pred HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC
Q 000169 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1061 LL~QW~~Ef~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN 1136 (1953)
|+.||.+++.+++. ++.+..+.|+....... .......+|+|+|++.+.... ..+....+++|||||||++..
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI---RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH---HHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 88899999999874 57777777765443322 122346899999999997653 223445789999999999864
Q ss_pred ch--hHHHHHhhh--cc---cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1137 RE--SVLARDLDR--YR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1137 ~~--SKlsraLk~--L~---a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
.. ..+...+.. +. ....+++|||+-. ++..++. .++..+......
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~---------- 241 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIFLAVG---------- 241 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEEEEEC----------
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEEEEeC----------
Confidence 32 223333332 11 3458999999822 1111111 111111000000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000169 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKv-E~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~a 1288 (1953)
.. ...++.. ..++.+.
T Consensus 242 -------------------------~~-~~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 242 -------------------------RV-GSTSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp ------------------------------CCSSEEEEEEECC-------------------------------------
T ss_pred -------------------------CC-CCCccCceEEEEEec-------------------------------------
Confidence 00 0001111 1111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC
Q 000169 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (1953)
Q Consensus 1289 k~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG 1368 (1953)
...|...|..++... ..+.++||||+....++.+.++|...|
T Consensus 259 -------------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 259 -------------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp -------------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 112334444444432 357799999999999999999999999
Q ss_pred CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEE
Q 000169 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1369 ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+.+..+||+++.++|..+++.|+++... +|++|+++++|||++.+++||+||++|++..|+|++||++|.|+...|.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 9999999999999999999999986655 7999999999999999999999999999999999999999999887776
Q ss_pred EEEE
Q 000169 1449 VIYM 1452 (1953)
Q Consensus 1449 VyrL 1452 (1953)
+++-
T Consensus 378 ~~~~ 381 (417)
T 2i4i_A 378 SFFN 381 (417)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=3.4e-28 Score=285.38 Aligned_cols=314 Identities=17% Similarity=0.180 Sum_probs=218.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---Ps 1075 (1953)
.++|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||.. |+.||.+.+.++. +.
T Consensus 47 ~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 47 RPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp SCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 7999999999888752 3478899999999999998776665544344455899999977 7788888877765 56
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCC--chh-HHHHHhhhcc
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD--RES-VLARDLDRYR 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN--~~S-KlsraLk~L~ 1149 (1953)
+.+....+...... ......+|+|+|++.+.... ..+...+|++|||||||++.. ... .....+..+.
T Consensus 125 ~~~~~~~~~~~~~~------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 125 LKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp CCEEEECTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred ceEEEeecCcchhh------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 77777766543321 12345799999999997653 233345799999999999854 222 2222333333
Q ss_pred -cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1150 -a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
....+++||||-. +++.++... +..+..... .
T Consensus 199 ~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~-----~------------------------ 231 (412)
T 3fht_A 199 RNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIKL-----K------------------------ 231 (412)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEECC-----C------------------------
T ss_pred CCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEee-----c------------------------
Confidence 3468999999832 222211111 100000000 0
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
.. ...++......+.+
T Consensus 232 -----~~-~~~~~~~~~~~~~~---------------------------------------------------------- 247 (412)
T 3fht_A 232 -----RE-EETLDTIKQYYVLC---------------------------------------------------------- 247 (412)
T ss_dssp -----GG-GSSCTTEEEEEEEC----------------------------------------------------------
T ss_pred -----cc-cccccCceEEEEEc----------------------------------------------------------
Confidence 00 00000000000000
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIe 1388 (1953)
.....|+..|..++.. ..+.++||||+....++.|.++|...++.+..+||+++.++|..+++
T Consensus 248 ---------------~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 310 (412)
T 3fht_A 248 ---------------SSRDEKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310 (412)
T ss_dssp ---------------SSHHHHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHH
Confidence 0012355556666554 35679999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCc------hhHHhhhhcccccCCcceEEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP------~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
.|+.+... +|++|+++++|||++++++||+||+||++ ..|+|++||++|.|+...+.++.-
T Consensus 311 ~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 311 RFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp HHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEc
Confidence 99976555 79999999999999999999999999876 699999999999998877766553
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.96 E-value=6.8e-27 Score=278.02 Aligned_cols=304 Identities=17% Similarity=0.233 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-sl 1076 (1953)
.+++|||.+++..++. +.+.|++.+||+|||+.++..+..+. ...+.+|||||+. |+.||..+|.+|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 3689999999988775 66899999999999996665555443 3456899999975 88999999999986 77
Q ss_pred eEEEEecchhhHhH-HHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc-------------hhH-H
Q 000169 1077 SCIYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR-------------ESV-L 1141 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~-l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~-------------~SK-l 1141 (1953)
++..++|......+ .....+..+.++|+|+|++.+......+...++++|||||||++... ... +
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 88888887654211 11122334568999999999987766666678999999999987321 112 2
Q ss_pred HHHhhhc------------ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000169 1142 ARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (1953)
Q Consensus 1142 sraLk~L------------~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~ 1209 (1953)
...+..+ .....+++||||....+...+ +..++......
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~~------------- 223 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR------------- 223 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSSC-------------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcCc-------------
Confidence 2333333 345689999997555422111 00000000000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHH
Q 000169 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289 (1953)
Q Consensus 1210 eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak 1289 (1953)
....+......+.
T Consensus 224 ---------------------------~~~~~~~i~~~~~---------------------------------------- 236 (414)
T 3oiy_A 224 ---------------------------LVSVARNITHVRI---------------------------------------- 236 (414)
T ss_dssp ---------------------------CCCCCCSEEEEEE----------------------------------------
T ss_pred ---------------------------cccccccchheee----------------------------------------
Confidence 0000111111000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCC
Q 000169 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (1953)
Q Consensus 1290 ~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGi 1369 (1953)
...|...|..+|.. .+.++||||+....++.|..+|...|+
T Consensus 237 ------------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 237 ------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ------------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 01233444555554 468999999999999999999999999
Q ss_pred eEE-eecCCCCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcCCC--CCchhHHhhhhccccc
Q 000169 1370 VYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1370 kyl-RLDGsTs~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifDpp--WNP~~d~QAiGRAhRI 1441 (1953)
.+. .+||. +|. ++.|+++..+ +|++ |+++++|||++. +++||+||+| +++..|+|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 99994 444 9999976544 5666 999999999999 9999999999 9999999999999999
Q ss_pred CCc--ceEEEEEEe
Q 000169 1442 GQK--REVKVIYME 1453 (1953)
Q Consensus 1442 GQK--KeV~VyrLv 1453 (1953)
|+. +.-.++.|+
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 974 344444443
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=4.4e-27 Score=291.39 Aligned_cols=305 Identities=17% Similarity=0.167 Sum_probs=220.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.++|+|.+++..++. +.++|+..+||+|||+.++..+. . ..+.+|||+|.. |+.+|...+.++ ++.+
T Consensus 25 ~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~----~~g~~lvi~P~~aL~~q~~~~l~~~--gi~~ 92 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--L----LNGLTVVVSPLISLMKDQVDQLQAN--GVAA 92 (523)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--H----SSSEEEEECSCHHHHHHHHHHHHHT--TCCE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--H----hCCCEEEECChHHHHHHHHHHHHHc--CCcE
Confidence 799999999999885 67899999999999987754443 1 136899999975 888899999986 4566
Q ss_pred EEEecchhhHhH-HHHHHHhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchh---HHHHH----hhhc
Q 000169 1079 IYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLARD----LDRY 1148 (1953)
Q Consensus 1079 vvy~Gs~deRk~-l~~qei~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~S---Klsra----Lk~L 1148 (1953)
..+.+....... ........+.++|+++|++.+... ...+...++.+|||||||.+..... ..+.. +..+
T Consensus 93 ~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~ 172 (523)
T 1oyw_A 93 ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF 172 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC
Confidence 666665432211 111234456789999999999643 2345557899999999999965331 12222 2334
Q ss_pred ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000169 1149 RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (1953)
Q Consensus 1149 ~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFm 1228 (1953)
....+++|||||......++...+.+-.|.++.. .+
T Consensus 173 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~---------------------------------- 208 (523)
T 1oyw_A 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF---------------------------------- 208 (523)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC----------------------------------
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC----------------------------------
Confidence 5567899999996555455554443322211100 00
Q ss_pred HHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCC
Q 000169 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (1953)
Q Consensus 1229 LRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP 1308 (1953)
..|.....++.
T Consensus 209 ----------~r~~l~~~v~~----------------------------------------------------------- 219 (523)
T 1oyw_A 209 ----------DRPNIRYMLME----------------------------------------------------------- 219 (523)
T ss_dssp ----------CCTTEEEEEEE-----------------------------------------------------------
T ss_pred ----------CCCceEEEEEe-----------------------------------------------------------
Confidence 00100000000
Q ss_pred CCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHH
Q 000169 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1309 ~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIe 1388 (1953)
...++..|..++.. ..+.++||||..+..++.+.++|...|+.+..+||+++.++|..+++
T Consensus 220 -----------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 280 (523)
T 1oyw_A 220 -----------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 280 (523)
T ss_dssp -----------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred -----------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 01122233333332 25779999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
.|..++.. +|++|.++|+|||++++++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 281 ~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 281 KFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 99986655 7899999999999999999999999999999999999999999988877655
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=1.9e-26 Score=287.53 Aligned_cols=324 Identities=18% Similarity=0.218 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWL- 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~Kwa- 1073 (1953)
.|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999988772 13567899999999999998777666554332 234789999975 8889999999874
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHH
Q 000169 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (1953)
Q Consensus 1074 -----PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsr 1143 (1953)
+.+.+....|......... ......++|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMN--KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHH--HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hcccccceEEEEEECCccHHHHHH--HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 4566777777655443321 23345789999999999764322 223468999999999987543 12222
Q ss_pred Hhhhc---c-----cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000169 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (1953)
Q Consensus 1144 aLk~L---~-----a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~l 1215 (1953)
.+..+ . ....++||||+-.. +. .++..+ +..+....
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~---~~~~~~--------------l~~~~~~~------------------ 242 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDDK-VQ---KLANNI--------------MNKKECLF------------------ 242 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH-HH---HHTTTT--------------CCSSEEEE------------------
T ss_pred HHHHhhhhhcccccCceEEEEeccCChH-HH---HHHHHH--------------cCCCceEE------------------
Confidence 22222 1 34689999997321 11 111100 00000000
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhcCCCCceEE-EEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000169 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSI-VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (1953)
Q Consensus 1216 iI~RLhklLrPFmLRRlKkDVekdLPpKvE~-vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL 1294 (1953)
+.. .............. .+.+.-
T Consensus 243 -------------~~~-~~~~~~~~~~~i~~~~~~~~~------------------------------------------ 266 (579)
T 3sqw_A 243 -------------LDT-VDKNEPEAHERIDQSVVISEK------------------------------------------ 266 (579)
T ss_dssp -------------EES-SCSSSCSSCTTEEEEEEEESS------------------------------------------
T ss_pred -------------Eee-cCccccccccccceEEEEecc------------------------------------------
Confidence 000 00000000000110 111100
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc---CC
Q 000169 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (1953)
Q Consensus 1295 ~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r---Gi 1369 (1953)
....+...+..++..+. ..+.++||||.....++.+.+.|... ++
T Consensus 267 ------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~ 316 (579)
T 3sqw_A 267 ------------------------------FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 316 (579)
T ss_dssp ------------------------------TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTS
T ss_pred ------------------------------hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCC
Confidence 00011222333333332 45789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+..+||+++..+|..++++|+.+... +|++|+++++|||++.+++||+||+||++..|+|++||++|.|+...+.+
T Consensus 317 ~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 393 (579)
T 3sqw_A 317 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 393 (579)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred cEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE
Confidence 999999999999999999999975544 79999999999999999999999999999999999999999998877766
Q ss_pred EEE
Q 000169 1450 IYM 1452 (1953)
Q Consensus 1450 yrL 1452 (1953)
++.
T Consensus 394 ~~~ 396 (579)
T 3sqw_A 394 FIC 396 (579)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=3.2e-26 Score=282.85 Aligned_cols=324 Identities=18% Similarity=0.211 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechH-HHHHHHHHHHHHC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNA-VLVNWKSELHKWL- 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~----~GP~LIVVP~S-LL~QW~~Ef~Kwa- 1073 (1953)
.|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||+. |+.||..++.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999988772 135678999999999999987776665543321 24789999975 8889999999863
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---ccccCccEEEcccccccCCch--hHHHH
Q 000169 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (1953)
Q Consensus 1074 -----PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L~kikWd~VIIDEAHrLKN~~--SKlsr 1143 (1953)
+.+.+..+.|........ ........+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAM--NKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHH--HHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHHH--HHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 345566666665443322 123345789999999998754322 122358999999999986543 12222
Q ss_pred Hhhhc---c-----cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000169 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (1953)
Q Consensus 1144 aLk~L---~-----a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~l 1215 (1953)
.+..+ . ....++||||+-.. +..++..+. ..+.......
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~~----v~~~~~~~~--------------~~~~~~~~~~--------------- 296 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDDK----VQKLANNIM--------------NKKECLFLDT--------------- 296 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH----HHHHTTTTC--------------CSSEEEEEES---------------
T ss_pred HHHhhhhccccCccCceEEEEEccCCHH----HHHHHHHhc--------------CCCceEEEec---------------
Confidence 22222 1 33589999997321 111111100 0000000000
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhcCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000169 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (1953)
Q Consensus 1216 iI~RLhklLrPFmLRRlKkDVekdLPpKvE-~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL 1294 (1953)
............. ..+.+...
T Consensus 297 -----------------~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 318 (563)
T 3i5x_A 297 -----------------VDKNEPEAHERIDQSVVISEKF----------------------------------------- 318 (563)
T ss_dssp -----------------SCSSSCSSCTTEEEEEEEESST-----------------------------------------
T ss_pred -----------------cCCCCccccccCceEEEECchh-----------------------------------------
Confidence 0000000000011 11111000
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc---CC
Q 000169 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (1953)
Q Consensus 1295 ~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r---Gi 1369 (1953)
.......+..++..+. ..+.++||||.....++.+.++|... ++
T Consensus 319 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~ 367 (563)
T 3i5x_A 319 -------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 367 (563)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred -------------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCc
Confidence 0001112222222222 45789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEE
Q 000169 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1370 kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~V 1449 (1953)
.+..+||+++..+|..+++.|+.+... +|++|+++++|||++.+++||+||+|+++..|+|++||++|.|....+.+
T Consensus 368 ~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 444 (563)
T 3i5x_A 368 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 444 (563)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEE
Confidence 999999999999999999999986544 79999999999999999999999999999999999999999998877766
Q ss_pred EEE
Q 000169 1450 IYM 1452 (1953)
Q Consensus 1450 yrL 1452 (1953)
++.
T Consensus 445 ~~~ 447 (563)
T 3i5x_A 445 FIC 447 (563)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.95 E-value=2.8e-26 Score=288.39 Aligned_cols=308 Identities=16% Similarity=0.130 Sum_probs=215.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPslk 1077 (1953)
..+||||.+++..++. +.++|+..+||+|||+.++..+.. ..+.+|||+|. +|+.+|...+.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3799999999998886 778999999999999877555432 24689999997 4888999999998 677
Q ss_pred EEEEecchhhH--hHHHHHHH--hhccccEEEEeHHHHHhh---hh----cccccCccEEEcccccccCCch-------h
Q 000169 1078 CIYYVGAKDQR--SRLFSQEV--AALKFNVLVTTYEFIMYD---RS----KLSKVDWKYIIIDEAQRMKDRE-------S 1139 (1953)
Q Consensus 1078 Vvvy~Gs~deR--k~l~~qei--~~~~fdVVITTYEsL~kd---~s----~L~kikWd~VIIDEAHrLKN~~-------S 1139 (1953)
+..+.|..... ..... .. ....++|+|+|++.+... .. .+...++.+|||||||.+.... .
T Consensus 111 ~~~l~~~~~~~~~~~~~~-~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~ 189 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHA-EMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189 (591)
T ss_dssp EEECCSSCCHHHHHHHHH-HHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG
T ss_pred EEEEeCCCCHHHHHHHHH-HhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH
Confidence 77777654322 22111 12 346789999999988532 11 2223478999999999986432 1
Q ss_pred HHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000169 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (1953)
Q Consensus 1140 KlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~R 1219 (1953)
.+......+....+++|||||......++...|.+-.+..+.. .
T Consensus 190 ~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~-------------------------- 233 (591)
T 2v1x_A 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S-------------------------- 233 (591)
T ss_dssp GGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C--------------------------
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C--------------------------
Confidence 2222223445667999999995433333333222111100000 0
Q ss_pred HHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000169 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (1953)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilm 1299 (1953)
...|.....+....
T Consensus 234 ------------------~~r~nl~~~v~~~~------------------------------------------------ 247 (591)
T 2v1x_A 234 ------------------FNRPNLYYEVRQKP------------------------------------------------ 247 (591)
T ss_dssp ------------------CCCTTEEEEEEECC------------------------------------------------
T ss_pred ------------------CCCcccEEEEEeCC------------------------------------------------
Confidence 00011111110000
Q ss_pred HHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCC
Q 000169 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (1953)
Q Consensus 1300 qLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~rGikylRLDGs 1377 (1953)
..+...+..++..+. ..+.++||||..+..++.|..+|...|+.+..+||+
T Consensus 248 ---------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 248 ---------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp ---------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 001111222222222 257899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++.++|..++++|..+... +|++|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+++
T Consensus 301 l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 9999999999999976655 7999999999999999999999999999999999999999999988877765
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=9.8e-26 Score=301.51 Aligned_cols=307 Identities=18% Similarity=0.228 Sum_probs=218.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs 1075 (1953)
.+++|||.+++.+++.....+. ++||+++||+|||++++..+..... ....+|||||+. |+.||..+|.++++.
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 4789999999999998666555 7899999999999998755544432 335899999987 778999999999875
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhccc-
Q 000169 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC- 1150 (1953)
Q Consensus 1076 --lkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a- 1150 (1953)
+.+.++.+.. ..+...+ .....+..+|+|+|++.+.++ +.-.+|++|||||+|++.. .....+..+..
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~-~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMRAN 751 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhcCC
Confidence 5666666533 2222222 234456799999999988643 3345789999999999743 34455555544
Q ss_pred ceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLR 1230 (1953)
.++|+|||||+.+.+...+. .+..+.
T Consensus 752 ~~vl~lSATp~p~~l~~~~~--~~~~~~---------------------------------------------------- 777 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMS--GMRDLS---------------------------------------------------- 777 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHT--TTSEEE----------------------------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHh--cCCCce----------------------------------------------------
Confidence 46899999997653221110 000000
Q ss_pred HHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 000169 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (1953)
Q Consensus 1231 RlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L 1310 (1953)
+. ..|+.....+..
T Consensus 778 -----~i-~~~~~~r~~i~~------------------------------------------------------------ 791 (1151)
T 2eyq_A 778 -----II-ATPPARRLAVKT------------------------------------------------------------ 791 (1151)
T ss_dssp -----EC-CCCCCBCBCEEE------------------------------------------------------------
T ss_pred -----EE-ecCCCCccccEE------------------------------------------------------------
Confidence 00 000000000000
Q ss_pred CCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHH
Q 000169 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIV 1388 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqeaIe 1388 (1953)
.+....+..++..++..+ ..+.+|||||+.+..++.+.+.|... ++.+..+||.++..+|.++++
T Consensus 792 ------------~~~~~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~ 858 (1151)
T 2eyq_A 792 ------------FVREYDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 858 (1151)
T ss_dssp ------------EEEECCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHH
T ss_pred ------------EEecCCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 000001112222333333 36789999999999999999999988 899999999999999999999
Q ss_pred HhhcCCCCccEEEEeccccccccCCccCCeEEEcCC-CCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP-DPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1389 rFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp-pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+|+++..+ +|++|.++++|||++++++||++++ .|++..+.|++||++|.|++..|.+++
T Consensus 859 ~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 859 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp HHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred HHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 99976555 7999999999999999999999999 589999999999999999877775554
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.94 E-value=5.9e-27 Score=284.35 Aligned_cols=314 Identities=18% Similarity=0.213 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw---aP 1074 (1953)
..++|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||.. |+.||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3799999999988875 23467899999999999998766655443333444799999987 677776665554 56
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh---hcccccCccEEEcccccccCCc--hh-HHHHHhhhc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR--ES-VLARDLDRY 1148 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~---s~L~kikWd~VIIDEAHrLKN~--~S-KlsraLk~L 1148 (1953)
.+.+.+..+...... ......+|+|+|++.+.... ..+...++++|||||||++... .. .....+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCccccc------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 777777766543221 11335689999999997654 2333457899999999998542 12 222233333
Q ss_pred c-cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000169 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (1953)
Q Consensus 1149 ~-a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPF 1227 (1953)
. ....+++||||-. +++.+...+.
T Consensus 265 ~~~~~~i~~SAT~~~----~~~~~~~~~~--------------------------------------------------- 289 (479)
T 3fmp_B 265 PRNCQMLLFSATFED----SVWKFAQKVV--------------------------------------------------- 289 (479)
T ss_dssp CTTSEEEEEESCCCH----HHHHHHHHHS---------------------------------------------------
T ss_pred CccceEEEEeCCCCH----HHHHHHHHHc---------------------------------------------------
Confidence 3 3468999999832 2222221111
Q ss_pred HHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCC
Q 000169 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (1953)
Q Consensus 1228 mLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNH 1307 (1953)
|......+. ...... ..+ .+.-..|+
T Consensus 290 -------------~~~~~i~~~----~~~~~~-~~~-----------------------------------~~~~~~~~- 315 (479)
T 3fmp_B 290 -------------PDPNVIKLK----REEETL-DTI-----------------------------------KQYYVLCS- 315 (479)
T ss_dssp -------------SSEEEEEEC----------------------------------------------------------
T ss_pred -------------CCCeEEecc----ccccCc-CCc-----------------------------------eEEEEEeC-
Confidence 111100000 000000 000 00000000
Q ss_pred CCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHH
Q 000169 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (1953)
Q Consensus 1308 P~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaI 1387 (1953)
....|+..|..++... .+.++||||.....++.|...|...++.+..+||+++..+|..++
T Consensus 316 -----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 316 -----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHH
Confidence 0011223333333322 346899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCCCc------hhHHhhhhcccccCCcceEEEEE
Q 000169 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1388 erFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppWNP------~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+.|+.+... +|++|+++++|||++.+++||+||+||++ ..|+|++||++|.|....|.+++
T Consensus 377 ~~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 377 ERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999976555 79999999999999999999999999876 69999999999999887776654
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.8e-26 Score=284.17 Aligned_cols=314 Identities=16% Similarity=0.161 Sum_probs=193.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkV 1078 (1953)
.|++||.+++..++.. .+.+.||+.+||+|||++++..+...+......+.+|||||.. |+.||.++|.+++....+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 5899999999887752 2378899999999999998777766654344456899999976 889999999999865443
Q ss_pred EEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc---hhHHHHHhhhcc-cce
Q 000169 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1079 vvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L~-a~~ 1152 (1953)
.+..+...... .......+|+|+|++.+.... ..+....|++|||||||++... .......+..+. ...
T Consensus 219 ~~~~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~ 293 (508)
T 3fho_A 219 KTAFGIKDSVP-----KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQ 293 (508)
T ss_dssp CEEC---------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCE
T ss_pred eEEEEeCCccc-----ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCe
Confidence 33322221111 112347899999999987642 2334457899999999998642 222333333444 345
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~-kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
.++|||||- +.+.++.. +|. .+.... ... ..
T Consensus 294 ~i~lSAT~~-~~~~~~~~------------------~~~~~~~~i~-~~~-~~--------------------------- 325 (508)
T 3fho_A 294 IVLFSATFS-ERVEKYAE------------------RFAPNANEIR-LKT-EE--------------------------- 325 (508)
T ss_dssp EEEEESCCS-THHHHHHH------------------HHSTTCEEEC-CCC-CC---------------------------
T ss_pred EEEEeCCCC-HHHHHHHH------------------HhcCCCeEEE-ecc-cc---------------------------
Confidence 799999983 21222111 111 000000 000 00
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
...+......+.+.
T Consensus 326 ------~~~~~~~~~~~~~~------------------------------------------------------------ 339 (508)
T 3fho_A 326 ------LSVEGIKQLYMDCQ------------------------------------------------------------ 339 (508)
T ss_dssp ----------CCCCEEEEC-------------------------------------------------------------
T ss_pred ------CCcccceEEEEECC------------------------------------------------------------
Confidence 00000000011100
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhh
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFN 1391 (1953)
....|...+..++... .+.++||||.....++.|...|...++.+..+||+++..+|..+++.|+
T Consensus 340 -------------~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~ 404 (508)
T 3fho_A 340 -------------SEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFR 404 (508)
T ss_dssp --------------CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHH
T ss_pred -------------chHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0112333344444332 4679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeccccccccCCccCCeEEEcCCC------CCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1392 s~ds~ifVfLLSTrAGGeGLNLQaADtVIifDpp------WNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
++... +|++|+++++|||++++++||+||++ +++..+.|++||++|.|+...|.++..
T Consensus 405 ~g~~~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 405 VGTSK---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp SSSCC---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred CCCCe---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 76655 79999999999999999999999999 789999999999999998888877653
No 36
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-23 Score=277.21 Aligned_cols=357 Identities=18% Similarity=0.110 Sum_probs=216.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPsl 1076 (1953)
+.+|+|||.+++.++.. +.+.|++.+||+|||+++...+...+. ..+++|||+|. .|..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999999876 678999999999999998766655543 23689999997 588899999999987
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~ 1151 (1953)
.+.++.|..... ...+|+|+|++.+.... ......+|++|||||+|++.+. ...+...+..+. ..
T Consensus 155 ~vglltGd~~~~----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITIN----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEEC----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCccC----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 566677754321 25689999999987542 1222347899999999999765 233334444554 45
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
+.|+||||+- +..++..++..+. ..+....
T Consensus 225 ~il~LSATi~--n~~e~a~~l~~~~--------------~~~~~vi---------------------------------- 254 (1010)
T 2xgj_A 225 RYVFLSATIP--NAMEFAEWICKIH--------------SQPCHIV---------------------------------- 254 (1010)
T ss_dssp EEEEEECCCT--THHHHHHHHHHHH--------------TSCEEEE----------------------------------
T ss_pred eEEEEcCCCC--CHHHHHHHHHhhc--------------CCCeEEE----------------------------------
Confidence 6899999952 2333322222110 0000000
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH-hcCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK-TCNHPLL 1310 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRK-iCNHP~L 1310 (1953)
....-|......+...-.. .+| ..++.. ..+....+... +..+.. ....+.-
T Consensus 255 ----~~~~rp~pl~~~~~~~~~~---~~~--------~~~~~~---------~~~~~~~~~~~---~~~l~~~~~~~~~~ 307 (1010)
T 2xgj_A 255 ----YTNFRPTPLQHYLFPAHGD---GIY--------LVVDEK---------STFREENFQKA---MASISNQIGDDPNS 307 (1010)
T ss_dssp ----EECCCSSCEEEEEEETTSS---CCE--------EEECTT---------CCBCHHHHHHH---HHTCC---------
T ss_pred ----ecCCCcccceEEEEecCCc---cee--------eeeccc---------cccchHHHHHH---HHHHhhhhcccccc
Confidence 0001111111111110000 000 000000 00000000000 000000 0000000
Q ss_pred CCCCccccchhhhhhc-cc-HHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHHcCCe-----------------
Q 000169 1311 NYPYFSDLSKDFLVKS-CG-KLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV----------------- 1370 (1953)
Q Consensus 1311 ~~p~l~dls~d~Li~~-SG-KLelLdrIL~kLkat-GhKVLIFSQft~~LDILed~L~~rGik----------------- 1370 (1953)
..+ ............ .+ ....+..++..+... +.++||||..+..++.+...|...++.
T Consensus 308 ~~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 308 TDS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 000 000000000000 00 022344455555444 458999999999999999888765442
Q ss_pred ----------------------EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cCC
Q 000169 1371 ----------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDP 1424 (1953)
Q Consensus 1371 ----------------------ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fDp 1424 (1953)
+..+||+++..+|..+++.|+.+..+ +|++|.++++|||++++++||. ||.
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCC
Confidence 67799999999999999999976655 7999999999999999999999 999
Q ss_pred ----CCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1425 ----DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1425 ----pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
||++..|.|++||++|.|+.....+|.+.+
T Consensus 464 ~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 464 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp SCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred cCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 999999999999999999976766766654
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=8.2e-25 Score=282.30 Aligned_cols=307 Identities=18% Similarity=0.230 Sum_probs=208.8
Q ss_pred CCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-- 1074 (1953)
+|+++|.+++..+..-...+ .+.||+.+||+|||++++..+...+.. ...+|||||+. |+.||..+|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999988754433 478999999999999998877766642 25899999986 78899999999986
Q ss_pred CCeEEEEecchhhHh--HHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh-cccc
Q 000169 1075 SVSCIYYVGAKDQRS--RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk--~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~a~ 1151 (1953)
++++.+++|...... ..+ ..+..+..+|+|+|++.+... +.-.++++|||||+|++.... ...+.. ....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~ 517 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIK-SGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMV 517 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHH-HHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred CceEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCC
Confidence 578888888654332 222 234456799999999988543 334578999999999983221 111221 2345
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
+.|+|||||+...+... .+ +. +.
T Consensus 518 ~vL~mSATp~p~tl~~~----~~------g~-------~~---------------------------------------- 540 (780)
T 1gm5_A 518 DTLVMSATPIPRSMALA----FY------GD-------LD---------------------------------------- 540 (780)
T ss_dssp CEEEEESSCCCHHHHHH----HT------CC-------SS----------------------------------------
T ss_pred CEEEEeCCCCHHHHHHH----Hh------CC-------cc----------------------------------------
Confidence 78999999965432211 00 00 00
Q ss_pred HHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCC
Q 000169 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~ 1311 (1953)
..+...+|+....+...-.
T Consensus 541 --~s~i~~~p~~r~~i~~~~~----------------------------------------------------------- 559 (780)
T 1gm5_A 541 --VTVIDEMPPGRKEVQTMLV----------------------------------------------------------- 559 (780)
T ss_dssp --CEEECCCCSSCCCCEECCC-----------------------------------------------------------
T ss_pred --eeeeeccCCCCcceEEEEe-----------------------------------------------------------
Confidence 0001112221100000000
Q ss_pred CCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechh--------HHHHHHHHHHHH---cCCeEEeecCCCCH
Q 000169 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW---RQLVYRRIDGTTSL 1380 (1953)
Q Consensus 1312 ~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft--------~~LDILed~L~~---rGikylRLDGsTs~ 1380 (1953)
...+...+...+.+....+++++|||... ..++.+.+.|.. .++.+..+||+++.
T Consensus 560 --------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~ 625 (780)
T 1gm5_A 560 --------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQ 625 (780)
T ss_dssp --------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCC
T ss_pred --------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCH
Confidence 00011112222333335677888888754 345667777776 47889999999999
Q ss_pred HHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCCCC-CchhHHhhhhcccccCCcceEEEEE
Q 000169 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1381 eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDppW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++|..++++|+++..+ +|++|+++++|||++++++||++|+++ +...+.|++||++|.|+...|.+++
T Consensus 626 ~eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 626 EEKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp SCSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9999999999976655 799999999999999999999999995 7899999999999999888776654
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.90 E-value=4.8e-23 Score=262.62 Aligned_cols=315 Identities=16% Similarity=0.125 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
.|+|||.+++..+.. +.+.|++.+||+|||+++...+...+. ..+++|||+|.. ++.+|..++.+|.+ +++
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 799999999988543 778999999999999999766655443 246899999987 88899999976654 578
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC--chhHHHHHhhhc----c
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY----R 1149 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L----~ 1149 (1953)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..+ .
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRDE------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCSS------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcchh------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 8888886443221 124789999999988654221 1123678999999999865 222233333333 3
Q ss_pred cceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000169 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (1953)
Q Consensus 1150 a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmL 1229 (1953)
..+.++||||+- +..+ |.+|+..+....
T Consensus 172 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~-------------------------------- 199 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTE------------------IAEWLDADYYVS-------------------------------- 199 (702)
T ss_dssp TCEEEEEECCCT--THHH------------------HHHHTTCEEEEC--------------------------------
T ss_pred CceEEEECCCcC--CHHH------------------HHHHhCCCcccC--------------------------------
Confidence 457899999973 2333 333333211000
Q ss_pred HHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCC
Q 000169 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (1953)
Q Consensus 1230 RRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~ 1309 (1953)
..-|-.....+...- ....... . . .
T Consensus 200 --------~~r~~~l~~~~~~~~---------------~~~~~~~-~-~---~--------------------------- 224 (702)
T 2p6r_A 200 --------DWRPVPLVEGVLCEG---------------TLELFDG-A-F---S--------------------------- 224 (702)
T ss_dssp --------CCCSSCEEEEEECSS---------------EEEEEET-T-E---E---------------------------
T ss_pred --------CCCCccceEEEeeCC---------------eeeccCc-c-h---h---------------------------
Confidence 000111111111000 0000000 0 0 0
Q ss_pred CCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc----------------------
Q 000169 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (1953)
Q Consensus 1310 L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r---------------------- 1367 (1953)
. ...-.+... +.++...+.++||||.....++.+...|...
T Consensus 225 ----~---------~~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~ 287 (702)
T 2p6r_A 225 ----T---------SRRVKFEEL----VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEM 287 (702)
T ss_dssp ----E---------EEECCHHHH----HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHH
T ss_pred ----h---------hhhhhHHHH----HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccc
Confidence 0 000002222 2223346889999999999988888877643
Q ss_pred --------CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC---CCCCchhHH
Q 000169 1368 --------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEE 1432 (1953)
Q Consensus 1368 --------GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD---ppWNP~~d~ 1432 (1953)
++.+..+||+++.++|..+.+.|..+... +|++|.++++|||++++++||. || .|+++..+.
T Consensus 288 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 288 SRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred cHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 13466799999999999999999976554 7999999999999999999998 77 789999999
Q ss_pred hhhhcccccCCcceEEEEEEeh
Q 000169 1433 QAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1433 QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|++|||+|.|+.+.-.+|.+.+
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECC
T ss_pred HHhhhcCCCCCCCCceEEEEec
Confidence 9999999999887777777765
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.3e-22 Score=258.69 Aligned_cols=324 Identities=15% Similarity=0.113 Sum_probs=210.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slk 1077 (1953)
.|+|+|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. ++.+|..++.++.+ ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999752 23478899999999999999976665544322 36899999987 88899999966554 677
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCc--hhHHHHHhhhccccee
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRR 1153 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a~~R 1153 (1953)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+. ...+...+..+...+.
T Consensus 105 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 8777775433221 123789999999988654211 11236799999999998642 2233344445566789
Q ss_pred EEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000169 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (1953)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRlK 1233 (1953)
++||||+- +..++ .+||..+.....
T Consensus 179 i~lSATl~--n~~~~------------------~~~l~~~~~~~~----------------------------------- 203 (715)
T 2va8_A 179 LALSATIS--NYKQI------------------AKWLGAEPVATN----------------------------------- 203 (715)
T ss_dssp EEEESCCT--THHHH------------------HHHHTCEEEECC-----------------------------------
T ss_pred EEEcCCCC--CHHHH------------------HHHhCCCccCCC-----------------------------------
Confidence 99999983 23333 333332110000
Q ss_pred hhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 000169 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (1953)
Q Consensus 1234 kDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~p 1313 (1953)
.-|-.....+...-.. .... . +.+.
T Consensus 204 -----~r~~~l~~~~~~~~~~-------------~~~~-----------~--------------------------~~~~ 228 (715)
T 2va8_A 204 -----WRPVPLIEGVIYPERK-------------KKEY-----------N--------------------------VIFK 228 (715)
T ss_dssp -----CCSSCEEEEEEEECSS-------------TTEE-----------E--------------------------EEET
T ss_pred -----CCCCCceEEEEecCCc-------------ccce-----------e--------------------------eecC
Confidence 0011111111100000 0000 0 0000
Q ss_pred CccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcC-------------------------
Q 000169 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------------- 1368 (1953)
Q Consensus 1314 ~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rG------------------------- 1368 (1953)
+.....+.....++. ++.++...+.++||||.....++.+...|....
T Consensus 229 ---~~~~~~~~~~~~~~~----~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 ---DNTTKKVHGDDAIIA----YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp ---TSCEEEEESSSHHHH----HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred ---cchhhhcccchHHHH----HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 000000000011222 223333578899999999999999988887642
Q ss_pred -----------CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC-------CCC
Q 000169 1369 -----------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDP 1426 (1953)
Q Consensus 1369 -----------ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD-------ppW 1426 (1953)
..+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .|+
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 2478899999999999999999976544 7999999999999999999999 99 899
Q ss_pred CchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1427 NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1427 NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
++..+.|+.|||+|.|+.+.-.+|.+.+
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 9999999999999999887777777765
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.90 E-value=1.2e-22 Score=259.65 Aligned_cols=315 Identities=15% Similarity=0.090 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC-CCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP-SVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP-slk 1077 (1953)
.|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .++.+|..++.+|.+ +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999752 22377899999999999999855554433222 3689999997 588899999976654 678
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCC--chhHHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~-a~~ 1152 (1953)
+..+.|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.. ....+...+..+. ..+
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 98 VAMATGDYDSKDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EEEECSCSSCCCG------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEecCCCCcccc------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 8888885433221 134789999999988543221 1123678999999999864 2233333344444 567
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.++||||+- +..+ |.+||..+....
T Consensus 172 ii~lSATl~--n~~~------------------~~~~l~~~~~~~----------------------------------- 196 (720)
T 2zj8_A 172 IIGLSATIG--NPEE------------------LAEWLNAELIVS----------------------------------- 196 (720)
T ss_dssp EEEEECCCS--CHHH------------------HHHHTTEEEEEC-----------------------------------
T ss_pred EEEEcCCcC--CHHH------------------HHHHhCCcccCC-----------------------------------
Confidence 899999973 2333 333332111000
Q ss_pred HhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 000169 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqLRKiCNHP~L~~ 1312 (1953)
..-|-.....+...- ...... ..
T Consensus 197 -----~~rp~~l~~~~~~~~---------------~~~~~~--------~~----------------------------- 219 (720)
T 2zj8_A 197 -----DWRPVKLRRGVFYQG---------------FVTWED--------GS----------------------------- 219 (720)
T ss_dssp -----CCCSSEEEEEEEETT---------------EEEETT--------SC-----------------------------
T ss_pred -----CCCCCcceEEEEeCC---------------eeeccc--------cc-----------------------------
Confidence 000111111111000 000000 00
Q ss_pred CCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc------------------C------
Q 000169 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------Q------ 1368 (1953)
Q Consensus 1313 p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r------------------G------ 1368 (1953)
. .....++..+.. +...++++||||..+..++.+...|... +
T Consensus 220 -------~---~~~~~~~~~~~~----~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 220 -------I---DRFSSWEELVYD----AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp -------E---EECSSTTHHHHH----HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred -------h---hhhhHHHHHHHH----HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 0 000112222222 3346789999999999998888888653 1
Q ss_pred ---------CeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE----cC----CCCCchhH
Q 000169 1369 ---------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNE 1431 (1953)
Q Consensus 1369 ---------ikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi----fD----ppWNP~~d 1431 (1953)
..+..+||+++.++|..+++.|..+... +|++|.++++|||++++++||. || .|+++..+
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~ 362 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEV 362 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHH
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHH
Confidence 2478899999999999999999976554 7999999999999999999998 88 68999999
Q ss_pred HhhhhcccccCCcceEEEEEEeh
Q 000169 1432 EQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
.|++|||+|.|+.+.-.+|.+.+
T Consensus 363 ~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 363 HQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHhhcCCCCCCCCceEEEEec
Confidence 99999999999877766776655
No 41
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-22 Score=268.52 Aligned_cols=348 Identities=16% Similarity=0.071 Sum_probs=213.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslk 1077 (1953)
.+|+|||.+++..+.. +.+.|++.+||+|||++++..|...+. ..+.+||++|.. |..||..+|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 4799999999988643 778999999999999998777766553 345899999976 78899999999987 4
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--ccccCccEEEcccccccCCch--hHHHHHhhhcc-cce
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQR 1152 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a~~ 1152 (1953)
+.++.|.... ....+|+|+|++.+...... ..-.++.+|||||||++.... ..+...+..+. ...
T Consensus 254 VglltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 254 VGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp EEEECSSCBC----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ccEEeCcccc----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCce
Confidence 5556665432 24579999999988764321 112368999999999997643 23333444454 346
Q ss_pred eEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000169 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (1953)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRRl 1232 (1953)
.|+||||+ .|. .++..++..+... |.....
T Consensus 324 vl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~---------------------------------- 353 (1108)
T 3l9o_A 324 YVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY---------------------------------- 353 (1108)
T ss_dssp EEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE----------------------------------
T ss_pred EEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe----------------------------------
Confidence 89999993 333 3333333222110 000000
Q ss_pred HhhhhcCCCCceEEEEEe-----------ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000169 1233 VEDVEGSLPPKVSIVLRC-----------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (1953)
Q Consensus 1233 KkDVekdLPpKvE~vV~c-----------~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~nilmqL 1301 (1953)
...-|....+.++. .........|............ . ... .. .. ...
T Consensus 354 ----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~--~-------~~~----~~-~~----~~~ 411 (1108)
T 3l9o_A 354 ----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG--D-------DPN----ST-DS----RGK 411 (1108)
T ss_dssp ----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------------
T ss_pred ----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhc--c-------ccc----cc-cc----ccc
Confidence 00001111111110 0000111111111100000000 0 000 00 00 000
Q ss_pred HHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhc-CCeeEEeechhHHHHHHHHHHHHcCCe----------
Q 000169 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV---------- 1370 (1953)
Q Consensus 1302 RKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkat-GhKVLIFSQft~~LDILed~L~~rGik---------- 1370 (1953)
+... +. .. .........+..++..+... +.++||||.....++.+...|...++.
T Consensus 412 ~~~~-----~~------~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 412 KGQT-----YK------GG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred cccc-----cc------cc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 0000 00 00 00000123344455555443 469999999999999999888654332
Q ss_pred -----------------------------EEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE
Q 000169 1371 -----------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1371 -----------------------------ylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi 1421 (1953)
+..+||+++..+|..+++.|..+..+ +|++|.++++|||++++++||+
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEES
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEe
Confidence 67899999999999999999986666 7999999999999999999999
Q ss_pred cCCCCCchh--------HHhhhhcccccCCcceEEEEEEeh
Q 000169 1422 YDPDPNPKN--------EEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1422 fDppWNP~~--------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
++.+|++.. |+|++||++|.|..+..++|.+..
T Consensus 555 ~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 555 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp CSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred cCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 998887765 999999999999877777776644
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.89 E-value=1.2e-21 Score=258.95 Aligned_cols=375 Identities=18% Similarity=0.112 Sum_probs=216.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
+.+|+|||.+++..+.. +.+.|++.+||+|||++++..|..+.. ..+.+|||+|.. |+.||..+|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 45899999999987765 678999999999999987666655543 235799999965 8899999999999888
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCc--hhHHHHHhhhccc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~a-~ 1151 (1953)
.+..+.|.... ....+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+.. .
T Consensus 110 ~v~~l~G~~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 99888886532 2357999999999976432 222347899999999998753 3345555556643 5
Q ss_pred eeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHH
Q 000169 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (1953)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~RLhklLrPFmLRR 1231 (1953)
..++|||||- +..+ |.+|+....... . ++
T Consensus 180 ~iIlLSAT~~--n~~e------------------f~~~l~~~~~~~--~--------------------------~v--- 208 (997)
T 4a4z_A 180 KFILLSATVP--NTYE------------------FANWIGRTKQKN--I--------------------------YV--- 208 (997)
T ss_dssp EEEEEECCCT--THHH------------------HHHHHHHHHTCC--E--------------------------EE---
T ss_pred CEEEEcCCCC--ChHH------------------HHHHHhcccCCc--e--------------------------EE---
Confidence 6899999973 2223 333332100000 0 00
Q ss_pred HHhhhhcCCCCceEEEEEe---------ccCHHHHHHHHHHHH----ccCcccCchh--HHhhhhcChhhH---HHHH--
Q 000169 1232 RVEDVEGSLPPKVSIVLRC---------RMSAIQSAIYDWIKA----TGTLRVDPED--EKRRVQKNPIYQ---AKVY-- 1291 (1953)
Q Consensus 1232 lKkDVekdLPpKvE~vV~c---------~MSa~Qr~LYk~I~~----~~~l~ld~~~--ek~~l~kn~~~~---ak~~-- 1291 (1953)
-.....|...++.++. .........|..... .......... ............ .+..
T Consensus 209 ---i~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 209 ---ISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp ---EECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred ---EecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 0000011111111111 000001111111100 0000000000 000000000000 0000
Q ss_pred -HHHHHHHHHHHHhcCCCCCCCCCccccchhhhh---hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1292 -KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLV---KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1292 -~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li---~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
..-...-..-+..+..+. ........+.. ....++..|..+|.. ....++||||.....++.+..+|...
T Consensus 286 ~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~ 359 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAG----AIGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGI 359 (997)
T ss_dssp -----------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTC
T ss_pred ccccccccccccccccccc----cccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcC
Confidence 000000000000000000 00000000000 112233344444432 34579999999999999999998766
Q ss_pred CC---------------------------------------eEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1368 QL---------------------------------------VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1368 Gi---------------------------------------kylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
++ .+..+||+++..+|..+++.|..+..+ +|++|.+++
T Consensus 360 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a 436 (997)
T 4a4z_A 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFA 436 (997)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhh
Confidence 55 468899999999999999999986655 799999999
Q ss_pred cccCCccCCeEEEcCCCC---------CchhHHhhhhcccccCCcceEEEEEEe
Q 000169 1409 RGLNLQSADTVIIYDPDP---------NPKNEEQAVARAHRIGQKREVKVIYME 1453 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppW---------NP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (1953)
+|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.+.
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999 7777766655 999999999999999988887777664
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=6.3e-22 Score=261.62 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=109.1
Q ss_pred CCcHHHHHHHHHHHHhhc----------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYN----------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSE 1068 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~----------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~E 1068 (1953)
.|||||..++.+++..+. .+.+||+++.||+|||++++.++ .++...+...++|||||. .|..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999999987543 23679999999999999986665 444333444689999995 588999999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc---c-cccCccEEEcccccccCCchhHHHHH
Q 000169 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---L-SKVDWKYIIIDEAQRMKDRESVLARD 1144 (1953)
Q Consensus 1069 f~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~---L-~kikWd~VIIDEAHrLKN~~SKlsra 1144 (1953)
|.+|.+.. ++.+.. ...+ .........+|+|||++.+...... + ....+.+||||||||+.. ...++.
T Consensus 350 f~~f~~~~---v~~~~s--~~~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~~ 421 (1038)
T 2w00_A 350 YQRFSPDS---VNGSEN--TAGL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQKN 421 (1038)
T ss_dssp HHTTSTTC---SSSSCC--CHHH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHHH
T ss_pred HHHhcccc---cccccC--HHHH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHHH
Confidence 99998752 111111 1111 1122235689999999999764321 1 122689999999999853 223444
Q ss_pred h-hhcccceeEEecccCCCC
Q 000169 1145 L-DRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1145 L-k~L~a~~RLLLTGTPLQN 1163 (1953)
+ ..++...+|+|||||+..
T Consensus 422 I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 422 LKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHCSSEEEEEEESSCCCS
T ss_pred HHHhCCcccEEEEeCCcccc
Confidence 4 456677899999999864
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.87 E-value=2e-21 Score=259.10 Aligned_cols=277 Identities=15% Similarity=0.216 Sum_probs=190.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PS 1075 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-Ps 1075 (1953)
+.+++|+|..++..++. +.+.|++.+||+|||+.++.++..++ ...+.+|||+|+. |+.||...|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999988775 67899999999999996666655554 3446799999976 7889999999976 45
Q ss_pred CeEEEEecchhh--HhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCch-------------hH
Q 000169 1076 VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-------------SV 1140 (1953)
Q Consensus 1076 lkVvvy~Gs~de--Rk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~-------------SK 1140 (1953)
+.+..++|.... +.... ..+..+.++|+|+|++.+.+....+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~-~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFE-KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHH-HHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred CeEEEEeCCCCHHHHHHHH-HHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 788888887644 11111 234445689999999999877665666689999999999864311 11
Q ss_pred -HHHHhhhc------------ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000169 1141 -LARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (1953)
Q Consensus 1141 -lsraLk~L------------~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~ 1207 (1953)
+...+..+ .....+++||||....+.+.+ +...+...+...
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~i~v~~~---------- 281 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGRL---------- 281 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTCCCCCBC----------
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhcceeEEeccC----------
Confidence 22333333 234689999997555432211 000000000000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhcCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000169 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (1953)
Q Consensus 1208 l~eEek~liI~RLhklLrPFmLRRlKkDVekdLPpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ 1287 (1953)
....+......+.
T Consensus 282 -----------------------------~~~~~~i~~~~~~-------------------------------------- 294 (1104)
T 4ddu_A 282 -----------------------------VSVARNITHVRIS-------------------------------------- 294 (1104)
T ss_dssp -----------------------------CCCCCCEEEEEES--------------------------------------
T ss_pred -----------------------------CCCcCCceeEEEe--------------------------------------
Confidence 0000000000000
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHc
Q 000169 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (1953)
Q Consensus 1288 ak~~~sL~nilmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~r 1367 (1953)
+.|...|..+|.. .+.++||||+....++.|..+|...
T Consensus 295 ---------------------------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~ 332 (1104)
T 4ddu_A 295 ---------------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF 332 (1104)
T ss_dssp ---------------------------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT
T ss_pred ---------------------------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC
Confidence 1233444455554 3589999999999999999999999
Q ss_pred CCeEE-eecCCCCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCcc-CCeEEEcCCCC
Q 000169 1368 QLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDP 1426 (1953)
Q Consensus 1368 Gikyl-RLDGsTs~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQa-ADtVIifDppW 1426 (1953)
|+.+. .+|| +|.+ +++|+++..+ +|++ |+++++|||++. +++||+||+|-
T Consensus 333 g~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 333 KFNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99998 9999 3555 9999986655 5777 999999999999 99999999998
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.83 E-value=5e-20 Score=245.11 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=172.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPs-- 1075 (1953)
..+ |+|.+++..++. +.+.|++.+||+|||+.++.++..+. ...+.+|||||+. |+.|+...|.+++..
T Consensus 56 ~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 348 999999988775 67899999999999984444444433 2346899999976 788899999998764
Q ss_pred C----eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc---
Q 000169 1076 V----SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--- 1148 (1953)
Q Consensus 1076 l----kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L--- 1148 (1953)
+ .+..++|......+......... ++|+|+|++.+......|. ++++|||||||++.+....+...+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf~ 204 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGFH 204 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTEE
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCcc
Confidence 4 67777776544322111111122 8999999999987755544 788999999999876444443333333
Q ss_pred ---------ccceeEEecccCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000169 1149 ---------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (1953)
Q Consensus 1149 ---------~a~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~k~F~e~F~kPf~k~g~~~~~e~d~l~eEek~liI~R 1219 (1953)
.....+++|+|+... .++. ..|...+
T Consensus 205 ~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~----------------------------- 239 (1054)
T 1gku_B 205 YDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQL----------------------------- 239 (1054)
T ss_dssp EETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHH-----------------------------
T ss_pred hhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcc-----------------------------
Confidence 122357777776332 1000 0000000
Q ss_pred HHHHhhHHHHHHHHhhhhc-CC-CCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000169 1220 LHQILEPFMLRRRVEDVEG-SL-PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (1953)
Q Consensus 1220 LhklLrPFmLRRlKkDVek-dL-PpKvE~vV~c~MSa~Qr~LYk~I~~~~~l~ld~~~ek~~l~kn~~~~ak~~~sL~ni 1297 (1953)
.. -.+.. .. +..... ..+
T Consensus 240 --------~~----i~v~~~~~~~~~i~~-~~~----------------------------------------------- 259 (1054)
T 1gku_B 240 --------LN----FDIGSSRITVRNVED-VAV----------------------------------------------- 259 (1054)
T ss_dssp --------HC----CCCSCCEECCCCEEE-EEE-----------------------------------------------
T ss_pred --------eE----EEccCcccCcCCceE-EEe-----------------------------------------------
Confidence 00 00000 00 000000 000
Q ss_pred HHHHHHhcCCCCCCCCCccccchhhhhhcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCC
Q 000169 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (1953)
Q Consensus 1298 lmqLRKiCNHP~L~~p~l~dls~d~Li~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGs 1377 (1953)
...|...|..++.. .+.++||||.....++.|.++|... +.+..+||+
T Consensus 260 ----------------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~ 307 (1054)
T 1gku_B 260 ----------------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTAT 307 (1054)
T ss_dssp ----------------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTS
T ss_pred ----------------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEecc
Confidence 01122233333332 2678999999999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCccEEEEe----ccccccccCCccC-CeEEEcCCC
Q 000169 1378 TSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQSA-DTVIIYDPD 1425 (1953)
Q Consensus 1378 Ts~eeRqeaIerFNs~ds~ifVfLLS----TrAGGeGLNLQaA-DtVIifDpp 1425 (1953)
+ ..++++|+.+..+ +|++ |+++++|||++.+ ++||+||+|
T Consensus 308 ~-----~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 308 K-----KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp S-----SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred H-----HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 7 3788999976554 5666 9999999999996 999999999
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.78 E-value=4e-19 Score=216.36 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=88.1
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEc
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIif 1422 (1953)
.+.++||||+....++.|.+.|...|+.+..+||.+. .++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 4668999999999999999999999999999999763 5789999976555 7999999999999999 999999
Q ss_pred C--------------------CCCCchhHHhhhhcccccCC-cceEEE
Q 000169 1423 D--------------------PDPNPKNEEQAVARAHRIGQ-KREVKV 1449 (1953)
Q Consensus 1423 D--------------------ppWNP~~d~QAiGRAhRIGQ-KKeV~V 1449 (1953)
| .|.++..|+|++||++|.|. ...+.+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 9 89999999999999999997 444533
No 47
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.78 E-value=1e-18 Score=211.81 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=86.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCe----
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 1418 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADt---- 1418 (1953)
.+.++||||.....++.+.+.|...++.+..+||. +|.+++++|+++..+ +|++|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 46689999999999999999999999999999997 588899999987666 799999999999999 555
Q ss_pred -------------EEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1419 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1419 -------------VIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
||++|.+.++..|.|++||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57889999999999999999999965443
No 48
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.78 E-value=1.6e-16 Score=204.16 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=104.8
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|..++..+...+.+|||||......+.|...|...|+++..|+|.....+|..+...|+. +. +||+|
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIAT 487 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIAT 487 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeC
Confidence 34568888888888777788999999999999999999999999999999999877777644445543 33 79999
Q ss_pred cccccccCCc--------cCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+++|+|+|+. ...+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 488 dmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 488 NMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp TTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 9999999999 778999999999999999999999999988776544
No 49
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.77 E-value=8e-19 Score=199.95 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=124.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--S 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaP--s 1075 (1953)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++. . ..+++|||||. .|+.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~-~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLE-N-YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHH-H-CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 357899999999999999888877664 2 23589999997 588999999999964 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeE
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RL 1154 (1953)
..+..+.++..... ......+|+|+||+.+.+....+ ..+|++|||||||++.+. .+...+..+ .+.++|
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 45555555432211 12356799999999998764332 247899999999999853 555566666 578899
Q ss_pred EecccCCCCCHHHHHHHHhhhcc
Q 000169 1155 LLTGTPLQNDLKELWSLLNLLLP 1177 (1953)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP 1177 (1953)
+|||||.. ...+++.++.++.|
T Consensus 257 ~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCCT-TSTTHHHHHHHHCE
T ss_pred EEeCCCCC-cchHHHHHHHhcCC
Confidence 99999964 45778888887766
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.77 E-value=2.1e-18 Score=209.77 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=82.6
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi- 1421 (1953)
.+.++||||.....++.+.+.|...++.+..+|| ++|..+++.|+++... +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999986665 799999999999999 999986
Q ss_pred ------------------cCCCCCchhHHhhhhccccc-CCcceEEEEE
Q 000169 1422 ------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVIY 1451 (1953)
Q Consensus 1422 ------------------fDppWNP~~d~QAiGRAhRI-GQKKeV~Vyr 1451 (1953)
||.|.++..|.|+.||++|. |.+..+.+++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 89999999999999999998 4555665553
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.75 E-value=2.1e-18 Score=210.69 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=86.3
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE-
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi- 1421 (1953)
.+.++||||.....++.|.+.|...|+.+..++|. +|..+++.|+.+... +|++|+++++|||++. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 46799999999999999999999999999999995 688899999876555 7999999999999999 99998
Q ss_pred -------------------cCCCCCchhHHhhhhcccccCC-cceEEEE
Q 000169 1422 -------------------YDPDPNPKNEEQAVARAHRIGQ-KREVKVI 1450 (1953)
Q Consensus 1422 -------------------fDppWNP~~d~QAiGRAhRIGQ-KKeV~Vy 1450 (1953)
||.|.++..|+|++||++|.|. ...+.+|
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 8899999999999999999996 5555444
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.75 E-value=1.1e-17 Score=214.58 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=109.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|.+++..+...+..|||||......+.|...|...|+++..|+|.....+|.-+...|+.+ . ++|+|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEec
Confidence 345789999988888777889999999999999999999999999999999998777776666777753 3 89999
Q ss_pred cccccccCCccC-------------------------------------CeEEEcCCCCCchhHHhhhhcccccCCcceE
Q 000169 1405 RAAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (1953)
Q Consensus 1405 rAGGeGLNLQaA-------------------------------------DtVIifDppWNP~~d~QAiGRAhRIGQKKeV 1447 (1953)
+.+|+|+|+... .+||+||.|-++..|.|++||++|.|.....
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 5999999999999999999999999988776
Q ss_pred EEEEEehhhhhh
Q 000169 1448 KVIYMEAVVDKI 1459 (1953)
Q Consensus 1448 ~VyrLvTVEEkI 1459 (1953)
..| ++.++..
T Consensus 577 ~~f--ls~eD~l 586 (853)
T 2fsf_A 577 RFY--LSMEDAL 586 (853)
T ss_dssp EEE--EETTSGG
T ss_pred EEE--ecccHHH
Confidence 554 3444443
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.75 E-value=1.3e-16 Score=204.83 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=104.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|...+..+...+..|||||......+.|...|...|+++..|+|.....++.-+...|+. +. ++|+|
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIAT 515 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVAT 515 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEec
Confidence 34568888888888877788999999999999999999999999999999999866666555566764 23 79999
Q ss_pred cccccccCCccC----------------------------------------------------CeEEEcCCCCCchhHH
Q 000169 1405 RAAGRGLNLQSA----------------------------------------------------DTVIIYDPDPNPKNEE 1432 (1953)
Q Consensus 1405 rAGGeGLNLQaA----------------------------------------------------DtVIifDppWNP~~d~ 1432 (1953)
+.+|+|+|+... .+||+||.|-++..|.
T Consensus 516 nmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~ 595 (922)
T 1nkt_A 516 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 595 (922)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred chhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHH
Confidence 999999999864 4999999999999999
Q ss_pred hhhhcccccCCcceEEEE
Q 000169 1433 QAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1433 QAiGRAhRIGQKKeV~Vy 1450 (1953)
|++||++|.|.......|
T Consensus 596 qr~GRTGRqGdpG~s~ff 613 (922)
T 1nkt_A 596 QLRGRSGRQGDPGESRFY 613 (922)
T ss_dssp HHHHTSSGGGCCEEEEEE
T ss_pred HHhcccccCCCCeeEEEE
Confidence 999999999988776554
No 54
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.74 E-value=1.2e-17 Score=213.11 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=89.6
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIi 1421 (1953)
..+.++||||.....++.+.+.|...++.+..+||. +|.++++.|+++... +|++|+++++|||++ +++||+
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEE
Confidence 357899999999999999999999999999999994 799999999976655 799999999999999 999997
Q ss_pred --------------------cCCCCCchhHHhhhhccccc-CCcceEEEE
Q 000169 1422 --------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVI 1450 (1953)
Q Consensus 1422 --------------------fDppWNP~~d~QAiGRAhRI-GQKKeV~Vy 1450 (1953)
||.|.++..|.|++||++|. |++..+.+|
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 67888999999999999999 566565554
No 55
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.73 E-value=2.7e-17 Score=173.74 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=111.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|..+|... .+.++||||+....++.|...|...|+.+..+||+++..+|..++++|+.+... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3467999999998863 678999999999999999999999999999999999999999999999976554 68999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999988776554
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.73 E-value=3.6e-17 Score=207.05 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=86.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeE---
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtV--- 1419 (1953)
.+.++||||.....++.|.+.|...++.+..+||. +|.++++.|+++... +|++|+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 46799999999999999999999999999999994 788899999986655 799999999999997 8988
Q ss_pred -----------------EEcCCCCCchhHHhhhhcccccCC-cceE
Q 000169 1420 -----------------IIYDPDPNPKNEEQAVARAHRIGQ-KREV 1447 (1953)
Q Consensus 1420 -----------------IifDppWNP~~d~QAiGRAhRIGQ-KKeV 1447 (1953)
|+||.|-++..|+||+||++|.|. +..+
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~a 471 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 471 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeE
Confidence 777778888999999999999986 4444
No 57
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.72 E-value=2.5e-17 Score=176.11 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=111.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|..+|... .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 467999999988864 578999999999999999999999999999999999999999999999976555 688999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++++|||++.+++||+||+|||+..|+|++||++|.|++..+.++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999988776654
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=9.5e-17 Score=207.79 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=91.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH-----------cCCeEEeecCCCCHHHHHHHHHHhhcC--CCCccEEEEecccccc
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGR 1409 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~-----------rGikylRLDGsTs~eeRqeaIerFNs~--ds~ifVfLLSTrAGGe 1409 (1953)
.+.++||||.....++.+.+.|.. .++.+..+||+++.++|..+++.|... ..+..-+|++|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998875 588899999999999999999999711 0123447999999999
Q ss_pred ccCCccCCeEEEcCC------------------CCCchhHHhhhhcccccCCcceEEEEEEeh
Q 000169 1410 GLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (1953)
Q Consensus 1410 GLNLQaADtVIifDp------------------pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (1953)
|||++++++||.++. |.+...+.|+.||++|. ... .+|+|++
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G--~~~~l~~ 441 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPG--KCFRLYT 441 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSE--EEEESSC
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCC--EEEEEec
Confidence 999999999999777 88999999999999998 233 4455544
No 59
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=6.3e-17 Score=181.62 Aligned_cols=141 Identities=28% Similarity=0.314 Sum_probs=109.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPsl 1076 (1953)
..+|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. .++.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 45899999999997664 4469999999999999998877543 4689999998 6889999999994 45
Q ss_pred e-EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEE
Q 000169 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (1953)
Q Consensus 1077 k-Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLL 1155 (1953)
. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ....+..+...++|+
T Consensus 159 ~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~ 223 (237)
T 2fz4_A 159 EYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLG 223 (237)
T ss_dssp GGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEE
T ss_pred CeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEEEE
Confidence 5 777777543 246899999999987765443 469999999999997654 334455667889999
Q ss_pred ecccCCCCCH
Q 000169 1156 LTGTPLQNDL 1165 (1953)
Q Consensus 1156 LTGTPLQNnL 1165 (1953)
|||||.+++-
T Consensus 224 LSATp~r~D~ 233 (237)
T 2fz4_A 224 LTATFEREDG 233 (237)
T ss_dssp EEESCC----
T ss_pred EecCCCCCCC
Confidence 9999988764
No 60
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=177.76 Aligned_cols=123 Identities=25% Similarity=0.349 Sum_probs=97.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
..+.|+..|.++|... ..+.++||||+....++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 4567999999988864 2578999999999999999999999999999999999999999999999976555 78899
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999887765554
No 61
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.70 E-value=9e-17 Score=169.86 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc
Q 000169 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (1953)
Q Consensus 1329 KLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG 1408 (1953)
|+..|..++... .+.++||||+....++.+..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 899999988864 578999999999999999999999999999999999999999999999976555 688999999
Q ss_pred cccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEEE
Q 000169 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (1953)
Q Consensus 1409 eGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (1953)
+|+|++.+++||+||+|||+..|.|++||++|.|++..|.++..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999998887765543
No 62
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=175.89 Aligned_cols=120 Identities=26% Similarity=0.330 Sum_probs=105.4
Q ss_pred cccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecc
Q 000169 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTr 1405 (1953)
...|+..|.++|.. .+.++||||++...++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45688777776653 567999999999999999999999999999999999999999999999976555 789999
Q ss_pred ccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1406 AGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
++++|||++.+++||+||+|||+..|+|++||++|.|++..+.++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999988775553
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=3.9e-15 Score=205.82 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=100.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-C--C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-P--S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa-P--s 1075 (1953)
.+.|.|.+++.-+ |+.+.|.+++.+||+|||+++...|...+. ....+.+|+|+|.. |+.+-..++.+.+ + +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 5778999998654 456778999999999999998766665554 33456899999976 6666566665433 2 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhccc----ccCccEEEcccccccCCchhHHHH-Hhhhc--
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKDRESVLAR-DLDRY-- 1148 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~----kikWd~VIIDEAHrLKN~~SKlsr-aLk~L-- 1148 (1953)
++|..+.|......+ ...+.+|+|+|++.+........ -.+..+|||||+|.+.......+. .+..+
T Consensus 1002 ~~V~~ltGd~~~~~~------~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLK------LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCEEECCSCHHHHHH------HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchh------hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 678878886543322 23457999999998733211111 125689999999999754332222 22222
Q ss_pred ------ccceeEEecccC
Q 000169 1149 ------RCQRRLLLTGTP 1160 (1953)
Q Consensus 1149 ------~a~~RLLLTGTP 1160 (1953)
...+.++||||-
T Consensus 1076 i~~~~~~~~riI~lSATl 1093 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSL 1093 (1724)
T ss_dssp HHHTTSSCCEEEEEESCB
T ss_pred HHhhcCCCceEEEEeCCC
Confidence 234678999994
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.68 E-value=1.1e-16 Score=203.29 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=79.8
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEE--
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI-- 1420 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVI-- 1420 (1953)
.+.++||||+....++.|.+.|...|+.+..+||+++.++ |..... -+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4789999999999999999999999999999999998764 433222 5899999999999996 99988
Q ss_pred --------EcC-----------CCCCchhHHhhhhcccccCCcce
Q 000169 1421 --------IYD-----------PDPNPKNEEQAVARAHRIGQKRE 1446 (1953)
Q Consensus 1421 --------ifD-----------ppWNP~~d~QAiGRAhRIGQKKe 1446 (1953)
+|| .|.++..|+||+||++| |.+..
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 677 78889999999999999 76654
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=6e-16 Score=197.59 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=94.0
Q ss_pred eeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCccCCeEEEcCC-
Q 000169 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 1424 (1953)
Q Consensus 1346 KVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQaADtVIifDp- 1424 (1953)
..||||.....++.+...|...++.+..+||+++.++|..+++.|+.+++.+. +|++|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34788888999999999999999999999999999999999999998444443 68999999999999 9999999999
Q ss_pred -------------CCCchhHHhhhhcccccCCc-ceEEEEEEeh
Q 000169 1425 -------------DPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (1953)
Q Consensus 1425 -------------pWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (1953)
|++...+.|+.||++|.|.. ..-.||.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999987 3456666644
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=166.25 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc
Q 000169 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (1953)
Q Consensus 1328 GKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG 1407 (1953)
.|+..|..++..+ .+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3888888877653 567999999999999999999999999999999999999999999999976554 78999999
Q ss_pred ccccCCccCCeEEEcCCC------CCchhHHhhhhcccccCCcceEEEE
Q 000169 1408 GRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1408 GeGLNLQaADtVIifDpp------WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
++|||++.+++||+||+| |++..|+|++||++|.|+...+.++
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999 6779999999999999977655433
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.65 E-value=8.2e-16 Score=169.73 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=109.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|.+++.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 346799999999874 4578999999999999999999999999999999999999999999999976555 79999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+||++..|.|++||++|.|+...|.+++
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999887765554
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.64 E-value=1.8e-15 Score=162.94 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~-SLL~QW~~Ef~KwaPs 1075 (1953)
.|+|||.+++.++.. +.++|++.+||+|||++++..+...+.. ......+|||||. .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 799999999998876 6789999999999999876666554321 1234579999998 5889999999999998
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-c
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a 1150 (1953)
+.+..+.|........ ......++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQK---EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHH---HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHH---HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 8888888765443221 122346899999999987543 2333457899999999998543 333444444444 4
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
...+++|||+
T Consensus 176 ~~~i~~SAT~ 185 (207)
T 2gxq_A 176 RQTLLFSATL 185 (207)
T ss_dssp SEEEEECSSC
T ss_pred CeEEEEEEec
Confidence 4689999998
No 69
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.64 E-value=8.4e-16 Score=165.56 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHH-HHHHHHHHC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVN-WKSELHKWL 1073 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~Q-W~~Ef~Kwa 1073 (1953)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... ...+++|||||.. ++.| |.+++.+|.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4899999999998875 67899999999999999998887765432 2356899999985 6788 999999987
Q ss_pred C-CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhc--------ccccCccEEEcccccccCC
Q 000169 1074 P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1074 P-slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~--------L~kikWd~VIIDEAHrLKN 1136 (1953)
+ .+.+..+.|........ .......+|+|+||+.+...... +...+|++|||||||++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCH---HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhH---HhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 6 47777777765433211 11123689999999999765432 3345789999999999964
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=1.8e-15 Score=165.25 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa---Ps 1075 (1953)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||. .|+.||.+++.++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998886 67899999999999998887776655322233489999997 58899999999986 47
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc-h--hHHHHHhhhcc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR-E--SVLARDLDRYR- 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~-~--SKlsraLk~L~- 1149 (1953)
+++.++.|........ ........+|+|+|++.+.... ..+...++++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 8888888865543222 1233456799999999987542 2233457899999999998542 2 22333333343
Q ss_pred cceeEEecccCCCC
Q 000169 1150 CQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1150 a~~RLLLTGTPLQN 1163 (1953)
...+++|||||-.+
T Consensus 190 ~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 190 EKQVMMFSATLSKE 203 (220)
T ss_dssp SSEEEEEESCCCTT
T ss_pred cCeEEEEEeecCHH
Confidence 45689999998443
No 71
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.42 E-value=2.9e-17 Score=174.69 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=109.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
..|+.+|..++.. ..+.++||||+....++.|.++|...|+.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 5688888888875 3568999999999999999999999999999999999999999999999975544 7899999
Q ss_pred cccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999988875554
No 72
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.62 E-value=1.7e-14 Score=199.45 Aligned_cols=157 Identities=18% Similarity=0.119 Sum_probs=102.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--------CCCCeEEEechH-HHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--------NYGPHLIIVPNA-VLVNWKSELH 1070 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--------~~GP~LIVVP~S-LL~QW~~Ef~ 1070 (1953)
+|.+.|.+++..++ +.+.|.+++.+||+|||+.+...|...+.... ..+++|+|+|.. |+.+-.++|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78899999987554 46778999999999999998766655443221 234689999965 6666777776
Q ss_pred HHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh------hhcccccCccEEEcccccccCCchhHHH
Q 000169 1071 KWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (1953)
Q Consensus 1071 KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd------~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (1953)
+.+. +++|..+.|......+ .....+|+|||++.+..- ...+ -...+|||||+|.+.+......
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~------~~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE------EISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT------TGGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc------ccCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHH
Confidence 6554 4677778876433211 134689999999986321 1122 2468999999998865322222
Q ss_pred -----HHhh---hcc-cceeEEecccCCCCCHHHHH
Q 000169 1143 -----RDLD---RYR-CQRRLLLTGTPLQNDLKELW 1169 (1953)
Q Consensus 1143 -----raLk---~L~-a~~RLLLTGTPLQNnL~ELw 1169 (1953)
+.+. ... .-++++||||- .|+.|+-
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA 261 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVA 261 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHH
Confidence 2211 122 33689999993 2344443
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.62 E-value=3.8e-14 Score=179.39 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=102.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+..|...+......+.+|||||......+.|...|...|+++..|+|.....+|.-+...|. .+. ++++|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~--~g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQ--KGM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHS--TTC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCC--CCe---EEEEc
Confidence 3456888888888888778999999999999999999999999999999999854444443344454 333 79999
Q ss_pred cccccccCCc--------cCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEE
Q 000169 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (1953)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (1953)
+.+|+|+|+. ...+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 9999999998 567999999999999999999999999998876554
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.60 E-value=1.1e-13 Score=176.60 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=102.4
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||+++..+|..+++.|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566666666666667889999999999999999999999999999999999999999999999975544 7999999
Q ss_pred cccccCCccCCeEEEcCC-----CCCchhHHhhhhcccccC
Q 000169 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDp-----pWNP~~d~QAiGRAhRIG 1442 (1953)
+++|||++.+++||++|. ++++..|+|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
No 75
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.60 E-value=7.1e-15 Score=158.41 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=112.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP---s 1075 (1953)
+|+|||.+++..+.. +.+.|+..+||+|||++++..+...+.......++|||||.. ++.||.+++.+++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 678999999999999888766655443233445799999975 78899999998864 6
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCch--hHHHHHhhhcc-c
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1150 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L~-a 1150 (1953)
+.+..+.|........ .......+|+|+|++.+..... .+...++++|||||||++.... ..+...+..+. .
T Consensus 101 ~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHH---HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 7788888776544332 1224578999999999865432 2333478999999999986532 23334444444 4
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
..++++|||+
T Consensus 178 ~~~l~~SAT~ 187 (206)
T 1vec_A 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred ceEEEEEeeC
Confidence 5789999998
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.60 E-value=4.6e-15 Score=162.45 Aligned_cols=160 Identities=18% Similarity=0.108 Sum_probs=114.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC----
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---- 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP---- 1074 (1953)
+++|||.+++.++.. +.++|++.+||+|||++++..+...+........+|||||.. |+.||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 699999999998886 678999999999999987776665543333456899999975 88999999998864
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCch--hHHHHHhhhc
Q 000169 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (1953)
Q Consensus 1075 --slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~~--SKlsraLk~L 1148 (1953)
.+.+..+.|+....... ......++|+|+|++.+.... ..+...++++|||||||++.+.. ..+...+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 46677777765443221 111346799999999987542 22334478999999999986432 3344455555
Q ss_pred c-cceeEEecccCCCCCHHH
Q 000169 1149 R-CQRRLLLTGTPLQNDLKE 1167 (1953)
Q Consensus 1149 ~-a~~RLLLTGTPLQNnL~E 1167 (1953)
. ...++++|||+ .+.+.+
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHH
T ss_pred CcccEEEEEecCC-CHHHHH
Confidence 4 34689999997 334433
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.60 E-value=8.1e-15 Score=162.08 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=112.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kwa---Ps 1075 (1953)
.++|||.+++..+.. +.+.|++.+||+|||++++..+...+.......++|||||. .|+.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998775 67899999999999998766555443223445689999997 58899999999986 36
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc---hhHHHHHhhhcc-
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR- 1149 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L~- 1149 (1953)
+++.++.|+....... ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDK----TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHH----HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHH----HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 7888888865443221 12346899999999987642 2333457889999999999543 233444455554
Q ss_pred cceeEEecccC
Q 000169 1150 CQRRLLLTGTP 1160 (1953)
Q Consensus 1150 a~~RLLLTGTP 1160 (1953)
...+++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 45689999996
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=160.85 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEech-HHHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPN-AVLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k----g~~GP~LIVVP~-SLL~QW~~Ef~KwaP 1074 (1953)
.|+|||.+++.+++. +.+.|++.+||+|||++++..+...+... .....+|||||. .|+.||.+++.++..
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999998875 67899999999999999877666544321 234579999997 588999999999986
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1075 s--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
. +.+..+.|........ ......+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEA----ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHH----HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHH----HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 6777777765543221 122578999999999976532 234457899999999998653 3344555555
Q ss_pred cc-cceeEEecccC
Q 000169 1148 YR-CQRRLLLTGTP 1160 (1953)
Q Consensus 1148 L~-a~~RLLLTGTP 1160 (1953)
+. ...+++||||+
T Consensus 199 ~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 199 LPKKRQTLLFSATQ 212 (236)
T ss_dssp SCTTSEEEEEESSC
T ss_pred CCCCCeEEEEEeeC
Confidence 54 34589999997
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=162.91 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.++|||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||.. |+.||.+++.+++. ++
T Consensus 65 ~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 799999999998875 678999999999999998777766554444556799999975 78899999999875 56
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc--hhHHHHHhhhcc-c
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a 1150 (1953)
.+.++.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+. .
T Consensus 141 ~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 217 (249)
T 3ber_A 141 QSAVIVGGIDSMSQS---LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217 (249)
T ss_dssp CEEEECTTSCHHHHH---HHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSS
T ss_pred eEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCC
Confidence 777777765443322 1224578999999999976532 233446899999999998653 233444455554 4
Q ss_pred ceeEEecccCC
Q 000169 1151 QRRLLLTGTPL 1161 (1953)
Q Consensus 1151 ~~RLLLTGTPL 1161 (1953)
..+++||||+-
T Consensus 218 ~~~l~~SAT~~ 228 (249)
T 3ber_A 218 RKTFLFSATMT 228 (249)
T ss_dssp SEEEEEESSCC
T ss_pred CeEEEEeccCC
Confidence 56899999983
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.56 E-value=2.1e-14 Score=157.01 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||.. ++.||.+++.+++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 799999999998875 678999999999999986555544433334456899999975 78999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+. ..
T Consensus 112 ~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 112 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 777777765433221 11234899999999987542 2233346899999999998543 233444444443 34
Q ss_pred eeEEecccCC
Q 000169 1152 RRLLLTGTPL 1161 (1953)
Q Consensus 1152 ~RLLLTGTPL 1161 (1953)
.+++||||+-
T Consensus 188 ~~i~lSAT~~ 197 (224)
T 1qde_A 188 QVVLLSATMP 197 (224)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEEeecC
Confidence 5899999983
No 81
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.56 E-value=1.2e-14 Score=169.57 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=107.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
....|+.+|.+++... .+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|
T Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT 85 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVAT 85 (300)
T ss_dssp CSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEe
Confidence 3467999999998764 488999999999999999999999999999999999999999999999986655 79999
Q ss_pred cccccccCCccCCeEEEcCCCCCchhHHhhhhcccccCCcceEEEEE
Q 000169 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (1953)
Q Consensus 1405 rAGGeGLNLQaADtVIifDppWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (1953)
+++++|||++.+++||+||+||++..|+|++||++|.|+...|.+++
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887766554
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.55 E-value=3.1e-14 Score=159.12 Aligned_cols=154 Identities=22% Similarity=0.267 Sum_probs=111.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH-HHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA-VLVNWKSEL 1069 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---------~~GP~LIVVP~S-LL~QW~~Ef 1069 (1953)
.|+|||.+++.+++. +.+.|++.+||+|||+.++..+...+.... ....+|||||.. |+.||.+++
T Consensus 45 ~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 799999999998876 678999999999999998777766553221 235799999975 889999999
Q ss_pred HHHCC--CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh--cccccCccEEEcccccccCCc--hhHHHH
Q 000169 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLAR 1143 (1953)
Q Consensus 1070 ~KwaP--slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s--~L~kikWd~VIIDEAHrLKN~--~SKlsr 1143 (1953)
.++.. .+.+..+.|........ .......+|+|+|++.+..... .+....+++|||||||++.+. ...+..
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 99875 36666677665443222 1223568999999999976432 233346789999999998643 333444
Q ss_pred Hhhhc--c---cceeEEecccC
Q 000169 1144 DLDRY--R---CQRRLLLTGTP 1160 (1953)
Q Consensus 1144 aLk~L--~---a~~RLLLTGTP 1160 (1953)
.+..+ . ....+++||||
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSC
T ss_pred HHhhccCCCCCCcEEEEEEEeC
Confidence 44432 2 34589999997
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.55 E-value=2.3e-14 Score=159.44 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--sl 1076 (1953)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||+. ++.||.+++.+++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 678999999999999987766665543233456899999975 88999999999975 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCC--chhHHHHHhhhcc-cc
Q 000169 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1151 (1953)
Q Consensus 1077 kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN--~~SKlsraLk~L~-a~ 1151 (1953)
.+..+.|........ .......++|+|+|++.+.... ..+....+++|||||||++.+ ....+...+..+. ..
T Consensus 128 ~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 666666654433221 1223345899999999887542 223344689999999999843 3344555555554 34
Q ss_pred eeEEecccCC
Q 000169 1152 RRLLLTGTPL 1161 (1953)
Q Consensus 1152 ~RLLLTGTPL 1161 (1953)
..+++|||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 6799999983
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.54 E-value=1.9e-12 Score=165.31 Aligned_cols=118 Identities=21% Similarity=0.211 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccc
Q 000169 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (1953)
Q Consensus 1327 SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrA 1406 (1953)
.+++..|...|......+.+|||||.....++.|.++|...|+++..+||.++..+|..+++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3455666555666666789999999999999999999999999999999999999999999999975554 7999999
Q ss_pred cccccCCccCCeEEEcCC-----CCCchhHHhhhhcccccCCcceEE
Q 000169 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIGQKREVK 1448 (1953)
Q Consensus 1407 GGeGLNLQaADtVIifDp-----pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (1953)
+++|+|++.+++||++|. ++++..|+|++||++|. ....|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i 550 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVI 550 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEE
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEE
Confidence 999999999999999998 89999999999999997 334443
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=149.65 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (1953)
+++|||.+++..+.. +.+.|+..+||+|||+.++..+...+.. ......+|||||.. |+.||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 799999999988875 7789999999999999887665544321 12445789999976 788999999998
Q ss_pred C-CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1073 L-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1073 a-PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
. .++.+..+.|........ ......++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 6 467777777655433221 122356899999999987642 2233346899999999998643 2334444555
Q ss_pred cc-cceeEEecccC
Q 000169 1148 YR-CQRRLLLTGTP 1160 (1953)
Q Consensus 1148 L~-a~~RLLLTGTP 1160 (1953)
+. ....+++|||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 54 34679999996
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=150.24 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~KwaPs-- 1075 (1953)
.++|||.+++..+.. +.+.|+..+||+|||+.++..+...+... .....+|||||.. |+.||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 699999999988775 67889999999999999876665554322 2334699999976 889999999999864
Q ss_pred CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh----cccccCccEEEcccccccCCc-----hhHHHHHhh
Q 000169 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDR-----ESVLARDLD 1146 (1953)
Q Consensus 1076 lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s----~L~kikWd~VIIDEAHrLKN~-----~SKlsraLk 1146 (1953)
+.+..+.|........ .......++|+|+|++.+..... .+.-.++++|||||||++... ...+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKF--GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHTTT--STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHHHh--hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 5555555543222111 11224577999999999975432 233446899999999998542 222333333
Q ss_pred hc--ccceeEEecccC
Q 000169 1147 RY--RCQRRLLLTGTP 1160 (1953)
Q Consensus 1147 ~L--~a~~RLLLTGTP 1160 (1953)
.+ ...+.++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 33 234689999998
No 87
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.44 E-value=1.1e-12 Score=145.99 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=110.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----g~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.++|||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||.. |+.||.+++.+++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 699999999988875 67899999999999999877666555422 2345789999976 7889999888875
Q ss_pred --CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh--hcccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1074 --PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1074 --PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~--s~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
.++.+..+.|........ .......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQI---RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 356777777765443222 122346899999999987543 2233347889999999998643 2334444555
Q ss_pred cc-cceeEEecccC
Q 000169 1148 YR-CQRRLLLTGTP 1160 (1953)
Q Consensus 1148 L~-a~~RLLLTGTP 1160 (1953)
+. ....+++|||.
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 53 34589999996
No 88
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.44 E-value=8.9e-13 Score=149.48 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=110.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
.|+|+|.+++..++. +.+.|++.+||+|||+.++..+...+.... ....+|||||+. |+.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 699999999988876 577899999999999998777666554321 345799999975 88899999999975
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc--hhHHHHHhhh
Q 000169 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (1953)
Q Consensus 1075 s--lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~--~SKlsraLk~ 1147 (1953)
. ..+..+.|........ ......++|+|+|++.+..... .+.-.++++|||||||++... ...+...+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 3 5566666654433222 1123458999999999875432 233346899999999998653 2334444445
Q ss_pred cc-cceeEEecccCC
Q 000169 1148 YR-CQRRLLLTGTPL 1161 (1953)
Q Consensus 1148 L~-a~~RLLLTGTPL 1161 (1953)
+. ....++||||+-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 54 345899999983
No 89
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.31 E-value=5.5e-11 Score=148.45 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccc
Q 000169 1332 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410 (1953)
Q Consensus 1332 lLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeG 1410 (1953)
.+...|..+ ...+.++|||+.....++.+.+.|.. +. +.+.|.. ..|.+++++|+.+ .. ..|.+.+....+|
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~EG 443 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESEG 443 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC-------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceecc
Confidence 344444444 35577999999999999999888754 33 3445554 4688999999863 22 2223478999999
Q ss_pred cCCcc----CCeEEEcCCCCCch------------------------------hHHhhhhcccccCCcceEEE
Q 000169 1411 LNLQS----ADTVIIYDPDPNPK------------------------------NEEQAVARAHRIGQKREVKV 1449 (1953)
Q Consensus 1411 LNLQa----ADtVIifDppWNP~------------------------------~d~QAiGRAhRIGQKKeV~V 1449 (1953)
||++. +.+||+++.|+-+. ...|++||+.|--...-|.+
T Consensus 444 iD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 444 VEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp --------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred eecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 99997 88999999996333 24599999999765555533
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=143.99 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa---P 1074 (1953)
..++++|..++..++. ..+.+.|++.+||+|||+.++..+...+........+|||||+. |+.|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3799999999977764 12378899999999999987765554443333444799999977 7788888877765 5
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhh---cccccCccEEEcccccccCCc---hhHHHHHhhhc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY 1148 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s---~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L 1148 (1953)
.+.+.++.|....... .....+|+|+|++.+..... .+.-.++.+|||||||++.+. ...+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TCCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CcEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 6777777765443211 13567999999999976542 333347889999999998641 12233333344
Q ss_pred cc-ceeEEecccCC
Q 000169 1149 RC-QRRLLLTGTPL 1161 (1953)
Q Consensus 1149 ~a-~~RLLLTGTPL 1161 (1953)
.. ...+++|||+-
T Consensus 265 ~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 265 PRNCQMLLFSATFE 278 (300)
T ss_dssp CTTCEEEEEESCCC
T ss_pred CCCCEEEEEeccCC
Confidence 33 45899999983
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.30 E-value=2.5e-10 Score=147.20 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=94.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~Kwa 1073 (1953)
|...+|-|..|+--++. +. |....||.|||++++..+. +.... ...++||||+..|. + |...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999877664 33 8889999999998755442 22112 23689999998553 3 777777766
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHH----hhh-----hccccc---CccEEEcccccccCCchhHH
Q 000169 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM----YDR-----SKLSKV---DWKYIIIDEAQRMKDRESVL 1141 (1953)
Q Consensus 1074 PslkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~----kd~-----s~L~ki---kWd~VIIDEAHrLKN~~SKl 1141 (1953)
++++.++.|+.....+ ......+|++.|+..|. ++. ..+... ...++||||+|.|.-.
T Consensus 148 -GLsv~~i~Gg~~~~~r-----~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD---- 217 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAER-----RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID---- 217 (997)
T ss_dssp -TCCEEECCTTCCHHHH-----HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS----
T ss_pred -CCeEEEEeCCCCHHHH-----HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh----
Confidence 5677666665432211 11235799999999883 222 112233 6789999999976421
Q ss_pred HHHhhhcccceeEEecccCCCCCHHHHHHHHh
Q 000169 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (1953)
Q Consensus 1142 sraLk~L~a~~RLLLTGTPLQNnL~ELwSLLn 1173 (1953)
.+..-|++|| |+... ..+|..++
T Consensus 218 -------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 218 -------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp -------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred -------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 1122389999 87766 44444443
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.96 E-value=2.5e-08 Score=126.82 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--Psl 1076 (1953)
++||+|.+.+.-+.....++.++|+...||+|||+.++..+...+... ..+++|++|+. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999987777777788999999999999999887665554332 35899999976 7888999988764 256
Q ss_pred eEEEEec
Q 000169 1077 SCIYYVG 1083 (1953)
Q Consensus 1077 kVvvy~G 1083 (1953)
++++..|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6665554
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.80 E-value=1.9e-08 Score=112.16 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=93.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~S-LL~QW~~Ef~KwaPs- 1075 (1953)
.+++||.+++..+.. +...++..++|+|||.+...++.......+. ...+|+++|.. +..+....+.+.+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 588999999988876 6778999999999997766555543332332 23678888987 455666667665532
Q ss_pred C-eEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEccccccc-CCchhH--HHHHh-hhccc
Q 000169 1076 V-SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESV--LARDL-DRYRC 1150 (1953)
Q Consensus 1076 l-kVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrL-KN~~SK--lsraL-k~L~a 1150 (1953)
+ ..+.|.-. ... .......+|+|+|++.+.+.... .-.++++|||||||++ .+.... ..+.+ ..+..
T Consensus 137 ~~~~~g~~~~-~~~------~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~ 208 (235)
T 3llm_A 137 PGKSCGYSVR-FES------ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE 208 (235)
T ss_dssp TTSSEEEEET-TEE------ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred cCceEEEeec-hhh------ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC
Confidence 1 11111111 000 01124578999999988766432 2346899999999984 222221 22222 23344
Q ss_pred ceeEEecccC
Q 000169 1151 QRRLLLTGTP 1160 (1953)
Q Consensus 1151 ~~RLLLTGTP 1160 (1953)
...+++|||+
T Consensus 209 ~~~il~SAT~ 218 (235)
T 3llm_A 209 VRIVLMSATI 218 (235)
T ss_dssp SEEEEEECSS
T ss_pred CeEEEEecCC
Confidence 5689999997
No 94
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.73 E-value=3.3e-08 Score=123.66 Aligned_cols=132 Identities=21% Similarity=0.233 Sum_probs=94.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP--s 1075 (1953)
.++||||.+.+..+......+.++|+...||+|||+.++..+.. ...++||++|+. +..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37999999998877777777888999999999999988766554 245899999976 78899999988743 5
Q ss_pred CeEEEEecchhh--------------------------------HhHHHHH----------------HHhhccccEEEEe
Q 000169 1076 VSCIYYVGAKDQ--------------------------------RSRLFSQ----------------EVAALKFNVLVTT 1107 (1953)
Q Consensus 1076 lkVvvy~Gs~de--------------------------------Rk~l~~q----------------ei~~~~fdVVITT 1107 (1953)
+++++..|.... ...+... .......+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677776664321 0001000 1113467999999
Q ss_pred HHHHHhhh--hccc-ccCccEEEcccccccCC
Q 000169 1108 YEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 1136 (1953)
Q Consensus 1108 YEsL~kd~--s~L~-kikWd~VIIDEAHrLKN 1136 (1953)
|.++..+. ..+. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998763 2121 13567899999999976
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.31 E-value=0.0022 Score=81.92 Aligned_cols=152 Identities=21% Similarity=0.155 Sum_probs=95.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPsl 1076 (1953)
...|=+.|.++|..++. ...-.|+.-+.|+|||.+.+.+|.+++.. ..++||++|+. .+.+....+.....
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~~~-- 258 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALCKQ-- 258 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhcCC--
Confidence 34789999999998875 12235888999999999999999988852 35899999987 45666666655432
Q ss_pred eEEEEecchhh--------------------------H------------------------------hHHHH-----HH
Q 000169 1077 SCIYYVGAKDQ--------------------------R------------------------------SRLFS-----QE 1095 (1953)
Q Consensus 1077 kVvvy~Gs~de--------------------------R------------------------------k~l~~-----qe 1095 (1953)
+++-+ |.... + +.+.. ..
T Consensus 259 ~ilRl-G~~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 337 (646)
T 4b3f_X 259 RILRL-GHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAML 337 (646)
T ss_dssp CEEEC-SCCSSCCHHHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEe-cchhhhhhhhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 21100 0 00000 00
Q ss_pred HhhccccEEEEeHHHHHhh--hhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1096 VAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1096 i~~~~fdVVITTYEsL~kd--~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
......+|+++|......+ ...+....|++||||||-.+.- ...+.-+....+++|-|=|.|-
T Consensus 338 ~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e-----~~~lipL~~~~~~ILVGD~~QL 402 (646)
T 4b3f_X 338 ESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALE-----ASCWIPLLKARKCILAGDHKQL 402 (646)
T ss_dssp HHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCH-----HHHTTTGGGSSEEEEEECTTSC
T ss_pred HHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccch-----HHHHhhccccceEEEcCCcccc
Confidence 0123467888876554332 2345567899999999866532 2233344445678899988763
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.17 E-value=0.0029 Score=77.59 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=81.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
..|-+.|.+++..++.....+. ..+|....|+|||..+..++.++... + ...+++++|+.....-..+.. ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-~-~~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-G-ETGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-T-CCCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-C-CceEEEecCcHHHHHHHHhhh----ccc
Confidence 3699999999998876554443 66888999999999888888888753 2 257899999876543222211 011
Q ss_pred EEEEecchhhHhHHHHHHH-hhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEe
Q 000169 1078 CIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLL 1156 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei-~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLL 1156 (1953)
+..++ .++.... .......+.. ........+++|||||+|.+-. ..+...+..+....++++
T Consensus 98 ~~T~h-------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~iiiDE~~~~~~--~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIH-------SILKINPVTYEENVLFEQ--------KEVPDLAKCRVLICDEVSMYDR--KLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHH-------HHHTEEEEECSSCEEEEE--------CSCCCCSSCSEEEESCGGGCCH--HHHHHHHHHSCTTCEEEE
T ss_pred hhhHH-------HHhccCcccccccchhcc--------cccccccCCCEEEEECchhCCH--HHHHHHHHhccCCCEEEE
Confidence 11000 0000000 0000000000 0011223689999999998732 222333334455678999
Q ss_pred cccCCCC
Q 000169 1157 TGTPLQN 1163 (1953)
Q Consensus 1157 TGTPLQN 1163 (1953)
.|-|-|.
T Consensus 161 vGD~~Ql 167 (459)
T 3upu_A 161 IGDNKQI 167 (459)
T ss_dssp EECTTSC
T ss_pred ECCHHHc
Confidence 9988763
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.07 E-value=0.0043 Score=79.12 Aligned_cols=150 Identities=18% Similarity=0.307 Sum_probs=92.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkV 1078 (1953)
.|-+.|.+++..++. +...++....|+|||.++..++..+.. ....++||++|+.. +.+-...+.+. ++.+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 688999999988764 344688899999999999888877763 24468999999875 44555555543 2222
Q ss_pred EEEecchh-----------------------hHh-----------------HHHH------HHHhhccccEEEEeHHHHH
Q 000169 1079 IYYVGAKD-----------------------QRS-----------------RLFS------QEVAALKFNVLVTTYEFIM 1112 (1953)
Q Consensus 1079 vvy~Gs~d-----------------------eRk-----------------~l~~------qei~~~~fdVVITTYEsL~ 1112 (1953)
+-+..... ... ..+. ........+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 22111100 000 0000 0011345689999876543
Q ss_pred hhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1113 kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
. ..+....|++||||||..+..+.+ + +.-+....+++|.|=|.|-
T Consensus 332 ~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 332 D--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp C--GGGTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred c--hhhhcCCCCEEEEecccccCcHHH-H---HHHHhcCCeEEEecChhcc
Confidence 2 345567899999999977654432 1 1122234689999988764
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.02 E-value=0.0031 Score=79.99 Aligned_cols=132 Identities=18% Similarity=0.114 Sum_probs=83.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslk 1077 (1953)
+..|-+.|..++..+.. +...+|.-..|+|||.++.+++..+.. ...++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45788999999988774 556788999999999888777766654 23589999999876665544321 00
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEec
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLT 1157 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLT 1157 (1953)
...+ ..++ .... . .+.. ..-....+++|||||++.+-. ..+...+..+....+++|.
T Consensus 256 a~Ti-------h~ll----~~~~-~-------~~~~--~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTV-------HRLL----GYGP-Q-------GFRH--NHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEH-------HHHT----TEET-T-------EESC--SSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHH-------HHHH----cCCc-c-------hhhh--hhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 0000 0000 0000 0 0000 111234789999999998842 3344445556677899999
Q ss_pred ccCCCC
Q 000169 1158 GTPLQN 1163 (1953)
Q Consensus 1158 GTPLQN 1163 (1953)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999874
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0069 Score=79.63 Aligned_cols=149 Identities=18% Similarity=0.251 Sum_probs=92.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~KwaPslkV 1078 (1953)
.|-+.|.+++..++. +.-.++....|+|||.++..++.++... ...++||++|+.. +.+-...+.+.. +.+
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 688999999987763 3346888999999999998888887753 2358999999875 455555565542 222
Q ss_pred EEEecchh----------------------hHhHH-----------------HH------HHHhhccccEEEEeHHHHHh
Q 000169 1079 IYYVGAKD----------------------QRSRL-----------------FS------QEVAALKFNVLVTTYEFIMY 1113 (1953)
Q Consensus 1079 vvy~Gs~d----------------------eRk~l-----------------~~------qei~~~~fdVVITTYEsL~k 1113 (1953)
+-+..... ....+ +. ........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 22211100 00000 00 00112356899998765542
Q ss_pred hhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1114 d~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
..+.. .|++||||||..+.... .+ +..+....+++|-|=|.|-
T Consensus 512 --~~L~~-~fd~viIDEA~q~~e~~-~l---i~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 512 --KRLDT-KFRTVLIDESTQASEPE-CL---IPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp --TTCCS-CCSEEEETTGGGSCHHH-HH---HHHTTTBSEEEEEECTTSC
T ss_pred --HHHhc-cCCEEEEECccccchHH-HH---HHHHhCCCEEEEEeCcccc
Confidence 23444 89999999998874332 11 2222334689999988763
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.80 E-value=0.0068 Score=79.65 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=92.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCCeE
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC 1078 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~KwaPslkV 1078 (1953)
.|-+.|.+++..++. +.-.++....|+|||.++..++..+... ...++||++|+... .+-...+.+. ++.+
T Consensus 356 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~v 427 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 427 (800)
T ss_dssp CCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccce
Confidence 689999999987764 3346888999999999998888877632 34689999998754 4444445432 2222
Q ss_pred EEEecchhh-----------------------HhHHH-----------------H------HHHhhccccEEEEeHHHHH
Q 000169 1079 IYYVGAKDQ-----------------------RSRLF-----------------S------QEVAALKFNVLVTTYEFIM 1112 (1953)
Q Consensus 1079 vvy~Gs~de-----------------------Rk~l~-----------------~------qei~~~~fdVVITTYEsL~ 1112 (1953)
+-+...... ...+. . ........+||++|...+.
T Consensus 428 vRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 507 (800)
T 2wjy_A 428 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 507 (800)
T ss_dssp EECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGG
T ss_pred EeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhC
Confidence 222111000 00000 0 0011235688998876554
Q ss_pred hhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1113 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1113 kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
. ..+....|++||||||..+..+.. + +..+....+++|.|=|.|-
T Consensus 508 ~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 508 D--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp C--TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred C--hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 2 335567899999999976643321 1 2222335689999988763
No 101
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.42 E-value=0.01 Score=75.68 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHHH-HHHHHHHHCCCC--e
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLVN-WKSELHKWLPSV--S 1077 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~Q-W~~Ef~KwaPsl--k 1077 (1953)
-+.|..++.-++. +...++.-..|+|||.++..++..+.... ....++++++|+..... -.+.+..+...+ .
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999987763 55678999999999988777776665421 22347899999875544 333333321100 0
Q ss_pred EEEEecchhhHhHHHHHHHhhcccc-EEEEeHHH--HHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeE
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFN-VLVTTYEF--IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1154 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fd-VVITTYEs--L~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RL 1154 (1953)
.....+.... ....+ ++-++... +.... ....++++||||||+.+- ...+...+..+....++
T Consensus 227 ~~~~~~~~~~----------~~Tih~ll~~~~~~~~~~~~~--~~~l~~d~lIIDEAsml~--~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 227 DEQKKRIPED----------ASTLHRLLGAQPGSQRLRHHA--GNPLHLDVLVVDEASMID--LPMMSRLIDALPDHARV 292 (608)
T ss_dssp SCCCCSCSCC----------CBTTTSCC-----------CT--TSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCEE
T ss_pred HHHHhccchh----------hhhhHhhhccCCCchHHHhcc--CCCCCCCEEEEechhhCC--HHHHHHHHHhCCCCCEE
Confidence 0000000000 00000 11111110 11111 122378999999999553 23344556666777899
Q ss_pred EecccCCCCC
Q 000169 1155 LLTGTPLQND 1164 (1953)
Q Consensus 1155 LLTGTPLQNn 1164 (1953)
+|.|-|-|-.
T Consensus 293 iLvGD~~QL~ 302 (608)
T 1w36_D 293 IFLGDRDQLA 302 (608)
T ss_dssp EEEECTTSGG
T ss_pred EEEcchhhcC
Confidence 9999987654
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.61 E-value=0.084 Score=64.07 Aligned_cols=156 Identities=17% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw---aP 1074 (1953)
..|.|||...+..+.. ..-.++.-.=+.|||..+.+++.+.... .....+++++|.. ....+..++..+ .|
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4799999998876632 2336777779999999888877765432 2334688888975 333344555554 34
Q ss_pred C-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhh-hcc--c
Q 000169 1075 S-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR--C 1150 (1953)
Q Consensus 1075 s-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk-~L~--a 1150 (1953)
. +...+...+.. .+ .+ ..+..+.+.+- +...+.....+++|+||+|.+++. ..++.++. .+. .
T Consensus 237 ~ll~~~~~~~~~~---~I---~f-~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWNKG---SI---EL-DNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEECSS---EE---EE-TTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCCcc---EE---Ee-CCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 21111111100 00 01 11222222221 233445667899999999999863 23344443 222 3
Q ss_pred ceeEEecccCCCCCHHHHHHHHhh
Q 000169 1151 QRRLLLTGTPLQNDLKELWSLLNL 1174 (1953)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnF 1174 (1953)
..+++++.||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 46888889996553 55555543
No 103
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.30 E-value=0.069 Score=67.49 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S-LL~QW~~Ef~Kwa 1073 (1953)
.|-+.|.++|.. . ....++-...|+|||.+.+.-|.+++...+ ....+|+|+++. ........+.+.+
T Consensus 9 ~Ln~~Q~~av~~-----~-~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA-----P-RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC-----C-SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC-----C-CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 688999999961 1 234566667999999999999999987433 335799999876 4445555566553
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.89 E-value=0.036 Score=60.20 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=25.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.++.-.||+|||..++.++..+.. ...+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 467889999999888777765543 22468888876
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.53 E-value=0.044 Score=67.68 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=69.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcc
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~ 1100 (1953)
.++....|+|||.....++. ..+.|||+|+. +...|.+.+.+. |. ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~----------~~-------------~~~ 212 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANAS----------GI-------------IVA 212 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTT----------SC-------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhc----------Cc-------------ccc
Confidence 36778899999976655441 25789999976 677788877432 00 001
Q ss_pred ccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCC
Q 000169 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1101 fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQN 1163 (1953)
-++-|.|++.+...........+++|||||+..+ +...+...+....+ .+++|.|=|-|-
T Consensus 213 ~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHHHhCCC-CEEEEecCcccc
Confidence 1234778887765544433445899999999865 22333333334444 899999988654
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.45 E-value=0.26 Score=62.61 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=84.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---
Q 000169 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--- 1073 (1953)
Q Consensus 998 ggkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kwa--- 1073 (1953)
...|.|||...+..+. . ....++.-.=|.|||..+.+++.+.+-.. ....++++.|.. ....+...+..++
T Consensus 161 ~~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3479999999887662 1 33467777899999998877776665432 234788888965 4444445666554
Q ss_pred CC-CeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhh-cc--
Q 000169 1074 PS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR-- 1149 (1953)
Q Consensus 1074 Ps-lkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~-L~-- 1149 (1953)
|. +.......+.. .+ .+ ..+..+.+.+ .+...+.....+++||||+|.+++.. .++.++.. +.
T Consensus 236 p~~~~~~~~~~~~~---~i---~~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 236 PDFLQPGIVEWNKG---SI---EL-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (592)
T ss_dssp CTTTSCCEEEECSS---EE---EE-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSS
T ss_pred hHhhccccccCCcc---EE---Ee-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccC
Confidence 32 11111100100 00 00 1122222222 12233445578999999999997742 44444443 22
Q ss_pred cceeEEecccCCCC
Q 000169 1150 CQRRLLLTGTPLQN 1163 (1953)
Q Consensus 1150 a~~RLLLTGTPLQN 1163 (1953)
...++++++||-..
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 34688999999554
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.21 E-value=0.099 Score=58.98 Aligned_cols=109 Identities=19% Similarity=0.103 Sum_probs=57.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH-HHCCCCeEEEEecchhhHhHHHHHHHhh
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH-KWLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~-KwaPslkVvvy~Gs~deRk~l~~qei~~ 1098 (1953)
.-.++.-+||.|||..++.++..+.. ...+++|+.|.-- .+ .. ..+.. .|-
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d----~r-~~~~i~sr------lG~-------------- 64 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKID----TR-SIRNIQSR------TGT-------------- 64 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCC----GG-GCSSCCCC------CCC--------------
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccC----ch-HHHHHHHh------cCC--------------
Confidence 33477899999999888887766653 2346787776431 00 00 00000 000
Q ss_pred ccccEEEEeHHHHHhhh-hcccccCccEEEcccccccCCchhHHHHHhhhc-ccceeEEeccc
Q 000169 1099 LKFNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1099 ~~fdVVITTYEsL~kd~-s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
.-..+.+.+...+.... ..+....+++|||||++.+... ....+..+ .....++|||-
T Consensus 65 ~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 00112233333333221 2233346899999999987542 22233332 22567888885
No 108
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.44 E-value=0.099 Score=59.69 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEech
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPN 1059 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~ 1059 (1953)
.+.+|.-+.|+|||..+-++...+...... .++++.|.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 346899999999999988777666542221 2355555443
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.36 E-value=0.29 Score=55.10 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=26.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-+||.|||..++.++..+.. ...++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 47899999999888887765543 335789988863
No 110
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=93.23 E-value=0.0043 Score=66.08 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=68.2
Q ss_pred cccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCC
Q 000169 1723 SGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRD 1791 (1953)
Q Consensus 1723 ~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~ 1791 (1953)
+.++ |+|.++.+| .+||++ ++||. ++|.+++. +-..|+.|+|.-..+...|+.. +||||+
T Consensus 22 ~~De-~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~Iy--- 92 (147)
T 3iu6_A 22 HQDD-EGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIY--- 92 (147)
T ss_dssp CBCT-TSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHH---
T ss_pred hcCC-CCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHH---
Confidence 4444 899999999 999988 78998 99999766 6788999999999988888765 999999
Q ss_pred CCccccccchhhhcccccccc
Q 000169 1792 EGEDEQVLQPKIKRKRSIRVR 1812 (1953)
Q Consensus 1792 ~~e~~~~~q~~~~~krs~~~r 1812 (1953)
+|..+||-.|+++|....+
T Consensus 93 --eDAv~Lq~~f~~~r~eL~~ 111 (147)
T 3iu6_A 93 --EDAVELQQFFIKIRDELCK 111 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhh
Confidence 9999999999998866543
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.78 E-value=0.41 Score=55.43 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=56.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~ 1099 (1953)
.+.+|.-+.|+|||..+-++...+... ..+++.|....+...+...+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~--------------------------- 87 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG--------------------------- 87 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT---------------------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC---------------------------
Confidence 457899999999998887777666542 34555555444444444433320
Q ss_pred cccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc---hhHHHHHhhhc-ccceeEEeccc
Q 000169 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
....+.. .+ ...++|||||+|.+... ...+...+..+ ....++++|+|
T Consensus 88 -------~~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 88 -------TINEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------CHHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------cHHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0001111 01 13679999999998642 22334444433 34457888886
No 112
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.72 E-value=0.28 Score=57.60 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=35.2
Q ss_pred CcHHHHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1001 LRDYQIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1001 LRPYQleGL~WLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
++|+|.+.+..+...+.++. ..+|..+.|+|||..+.++...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 67899999888887765543 258899999999999988887765
No 113
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.39 E-value=0.37 Score=53.06 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=26.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.++.-.||+|||..++.++..+.. ...+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 367889999999888877766543 33578888876
No 114
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.29 E-value=0.48 Score=50.06 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=26.3
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPL 1161 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPL 1161 (1953)
....+|||||+|.+... ...+...+.......++++|+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 46789999999998532 223444444555566777776543
No 115
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=91.78 E-value=0.78 Score=58.80 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S-LL~QW~~Ef~KwaP 1074 (1953)
.|-|.|.++|... ....++....|+|||.+.+.-|.+++...+ ....+|+|+.+. ........+.+..+
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4779999998641 334566678999999999999999987544 445789999765 45555566666543
No 116
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.63 E-value=0.34 Score=55.90 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred CccEEEcccccccC-C-chhHHHHHhhhcccceeEEecccCCC
Q 000169 1122 DWKYIIIDEAQRMK-D-RESVLARDLDRYRCQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1122 kWd~VIIDEAHrLK-N-~~SKlsraLk~L~a~~RLLLTGTPLQ 1162 (1953)
...+|||||+|.+. . ....+...+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 2 23345555555566778888877643
No 117
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.30 E-value=0.9 Score=46.77 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999888777766543
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.76 E-value=0.9 Score=46.93 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.+|.-+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999988877766654
No 119
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.13 E-value=1.2 Score=47.29 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
++..+..+...+..-......+|.-+.|+|||..+-.+...+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 455555554444322212246899999999998776665544
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.06 E-value=0.78 Score=49.56 Aligned_cols=38 Identities=16% Similarity=-0.088 Sum_probs=25.4
Q ss_pred HHHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1007 VGLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1007 eGL~WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
..+.++..... .+.+.+|.-+.|+|||..+-++...+.
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444444333 345668999999999988877766554
No 121
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.99 E-value=0.48 Score=55.23 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=27.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
.+.+|.-+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTTG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhccc
Confidence 456899999999998887765542 23555555554544443
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=88.78 E-value=0.52 Score=56.02 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (1953)
.+.||.-+.|+|||..+-++...+ ..+++.|....++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh
Confidence 467899999999999887776554 2355555444443
No 123
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.57 E-value=0.99 Score=51.54 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=25.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-.||.|||..+|..+.... ....++||+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 6788999999988777665443 4445788888753
No 124
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.56 E-value=0.34 Score=50.03 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000169 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (1953)
Q Consensus 1010 ~WLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (1953)
.++......+.+.+|.-|.|+|||..+-++.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3443444567788999999999998775543
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.56 E-value=4.9 Score=42.33 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
.+.|..++.++..... .+.+.+|.-+.|+|||..+-+++..+....+. .++++....++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTKDLIFRLKHL 85 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHHHHHHHHHHH
Confidence 3578888887776553 34556888999999998887777666533322 34444444444444433
No 126
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.43 E-value=0.81 Score=51.35 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (1953)
+..+........+.+|.-++|+|||..+-++.
T Consensus 19 ~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 33444444556778999999999997765554
No 127
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.39 E-value=0.72 Score=53.31 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=26.5
Q ss_pred CccEEEcccccccCC-chhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+.+|||||+|.+.. ....+.+.+.......+++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 568999999999853 233455556665666677776654
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.36 E-value=1.2 Score=52.08 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHH-hhcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLS-LYNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLls-L~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
++.+++.+..++. .... ..+.+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4556655543333 2222 234688999999999888777766544
No 129
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.34 E-value=0.86 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=24.6
Q ss_pred CccEEEcccccccCCch-hHHHHHhhhcccceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGT 1159 (1953)
+|.+|||||+|+|.... ..+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 68999999999995322 234455555555556666643
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=87.87 E-value=0.63 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (1953)
...+.+|.-+.|+|||..+-++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 445678999999999988766654
No 131
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.82 E-value=0.026 Score=58.11 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=61.7
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+|| .+-
T Consensus 32 ~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 105 (123)
T 2dat_A 32 SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIY-----EDS 105 (123)
T ss_dssp SSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 568899999 88999999999999999999877 7789999999877776666655 778888 677
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|.++++
T Consensus 106 ~~L~~~f~~~~~ 117 (123)
T 2dat_A 106 IVLQSVFKSARQ 117 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666544
No 132
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=87.79 E-value=0.024 Score=58.43 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=62.0
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|++| .+-
T Consensus 28 ~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 101 (126)
T 3mqm_A 28 SRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVG-----RDV 101 (126)
T ss_dssp TCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHH-----HHH
T ss_pred CCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 578899999 99999999999999999999876 7789999999877777777654 788888 677
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|.++.+
T Consensus 102 ~~L~~~f~~~~~ 113 (126)
T 3mqm_A 102 CRLRKAYYNARH 113 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766665443
No 133
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.62 E-value=1.5 Score=53.64 Aligned_cols=101 Identities=13% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~ 1099 (1953)
.+.+|.-+.|+|||..+-++..++... ....+++.|....++..+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 356899999999998887777666543 2233555554444443333333210
Q ss_pred cccEEEEeHHHHHhhhhcccccCccEEEcccccccCCc---hhHHHHHhhhc-ccceeEEeccc
Q 000169 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (1953)
Q Consensus 1100 ~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~---~SKlsraLk~L-~a~~RLLLTGT 1159 (1953)
....+.. .+ ....++|||||.|.+... ...+...+..+ .....+++|.+
T Consensus 183 -------~~~~~~~---~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 -------KLNEFRE---KY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp -------CHHHHHH---HH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred -------cHHHHHH---Hh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0011111 01 125789999999999752 23344455443 33356666654
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.36 E-value=1.6 Score=49.60 Aligned_cols=40 Identities=23% Similarity=0.476 Sum_probs=26.8
Q ss_pred cCccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.+..+|||||+|++... ...+.+.+.......++++|++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45789999999998532 23345555555566677777654
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.20 E-value=1.1 Score=51.93 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
++.++..+...+... ....+.+|.-+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555544333222 33456789999999999888777766543
No 136
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.01 E-value=5.7 Score=47.08 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=29.1
Q ss_pred cHHHHHHHH-HHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQ-WMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~-WLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|+-|..-|. ++..... .+.+.+|.-.+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554 3333332 3344578999999999999888877764
No 137
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.35 E-value=3.4 Score=51.90 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=55.6
Q ss_pred HHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecC-CCCHHHHHHHHHHhhcCCCCccEEEEec--ccc
Q 000169 1332 ILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--RAA 1407 (1953)
Q Consensus 1332 lLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~rGikylRLDG-sTs~eeRqeaIerFNs~ds~ifVfLLST--rAG 1407 (1953)
.+.+.|..+ ...+.++|||+.....++.+.+. .++.+.. .| +++ +..+++.|+..+. .+|+++ ...
T Consensus 380 ~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~-q~~~~~---~~~~~~~~~~~~~---~vl~~v~gg~~ 449 (551)
T 3crv_A 380 RYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYV-ESEDSS---VEDLYSAISANNK---VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEE-CCSSCC---HHHHHHHTTSSSS---CEEEEESSCCS
T ss_pred HHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEE-cCCCCC---HHHHHHHHHhcCC---eEEEEEeccee
Confidence 344444443 44567899988888888777762 3444433 33 333 4567888863222 366665 799
Q ss_pred ccccCCc-----cCCeEEEcCCCC
Q 000169 1408 GRGLNLQ-----SADTVIIYDPDP 1426 (1953)
Q Consensus 1408 GeGLNLQ-----aADtVIifDppW 1426 (1953)
.+|||++ .+..||+.-.|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 378999987665
No 138
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=85.58 E-value=0.3 Score=50.42 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.7
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHH
Q 000169 1016 YNNKLNGILADEMGLGKTVQVMAL 1039 (1953)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIAL 1039 (1953)
.....+.+|.-+.|+|||..+-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345677899999999999766444
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.55 E-value=1.2 Score=50.74 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=25.8
Q ss_pred CccEEEcccccccCCch-hHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~~-SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
+..+|||||+|.+.... ..+.+.+.......++++++++
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 47899999999985322 2344455555566677777655
No 140
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=84.87 E-value=0.034 Score=57.00 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .||++| .+-
T Consensus 27 ~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 100 (120)
T 3ljw_A 27 SGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVF-----KDA 100 (120)
T ss_dssp TSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 689999999 99999999999999999999877 7789999999877666666644 677777 555
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.|.+
T Consensus 101 ~~L~~~f~~ 109 (120)
T 3ljw_A 101 NSIKKIFYM 109 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 141
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.86 E-value=1.5 Score=51.26 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHhhcCC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1002 RDYQIVGLQWMLSLYNNK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~~n~----lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+..+..+.++......+ .+.+|.-+.|+|||..+-++...+ +...|++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL----GPDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH----CSSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh----cccCCcccccch
Confidence 466677777777665443 356899999999998887776554 222366555543
No 142
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=84.61 E-value=0.036 Score=57.10 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|| .+-
T Consensus 34 ~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 107 (124)
T 3mb4_A 34 RGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIY-----KDA 107 (124)
T ss_dssp TSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 579999999 88999999999999999999877 7789999999877777767654 778887 565
Q ss_pred cccchhhhcc
Q 000169 1797 QVLQPKIKRK 1806 (1953)
Q Consensus 1797 ~~~q~~~~~k 1806 (1953)
..|+-.+.++
T Consensus 108 ~~L~~~f~~~ 117 (124)
T 3mb4_A 108 LVLHKVLLET 117 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 143
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=84.13 E-value=0.031 Score=58.00 Aligned_cols=82 Identities=22% Similarity=0.258 Sum_probs=66.1
Q ss_pred cCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCC
Q 000169 1725 SSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEG 1793 (1953)
Q Consensus 1725 ~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~ 1793 (1953)
++.+++.++.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+||
T Consensus 28 d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~----- 101 (129)
T 2grc_A 28 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY----- 101 (129)
T ss_dssp CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----
T ss_pred cccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----
Confidence 445788999999 88999999999999999999877 7789999999877666666654 788888
Q ss_pred ccccccchhhhcccccccc
Q 000169 1794 EDEQVLQPKIKRKRSIRVR 1812 (1953)
Q Consensus 1794 e~~~~~q~~~~~krs~~~r 1812 (1953)
.+-..|+-.|.++.+....
T Consensus 102 ~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 102 EDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 7777787777776554443
No 144
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.11 E-value=2.7 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
..+.+|.-+.|+|||..+-++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999888766543
No 145
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=84.09 E-value=1.4 Score=52.71 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
..+.||.-+.|+|||..+-++... ...+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhccc
Confidence 356789999999999888666432 12355555555454433
No 146
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=84.03 E-value=4.1 Score=46.12 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
++.-+||.|||...+-.+..+.. ...++||+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 67888999999777666544432 234688888753
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=83.96 E-value=2.8 Score=48.75 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=24.6
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEeccc
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGT 1159 (1953)
.+.+|||||+|.+... ...+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 5789999999998432 2234444444455667777765
No 148
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.83 E-value=2.3 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
..+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999998886665543
No 149
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.63 E-value=0.86 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 000169 1022 GILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~L 1043 (1953)
.++.-.+|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3678899999999887765443
No 150
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=83.59 E-value=0.047 Score=57.94 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=66.8
Q ss_pred cccCCCCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCC
Q 000169 1723 SGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRD 1791 (1953)
Q Consensus 1723 ~~~~~~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~ 1791 (1953)
.-...+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+||
T Consensus 39 ~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~--- 114 (150)
T 3tlp_A 39 AREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVY--- 114 (150)
T ss_dssp CBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH---
T ss_pred HHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH---
Confidence 44455789999999 99999999999999999999977 7799999999888777777654 889999
Q ss_pred CCccccccchhhhcccc
Q 000169 1792 EGEDEQVLQPKIKRKRS 1808 (1953)
Q Consensus 1792 ~~e~~~~~q~~~~~krs 1808 (1953)
.+-..|+-.+.++..
T Consensus 115 --~~A~~L~~~f~~~~~ 129 (150)
T 3tlp_A 115 --NDAHILEKLLKEKRK 129 (150)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 777888877766543
No 151
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.89 E-value=1.4 Score=54.10 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=24.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+.||.-+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999998887766543 22355555555555444
No 152
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=82.88 E-value=0.053 Score=56.47 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.|| .+|+...+|+|+.++++|++++. +-..|+.|+|.-..+-..|+.. .+|+|+ .+-
T Consensus 36 ~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 109 (130)
T 3k2j_A 36 QGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIY-----KRV 109 (130)
T ss_dssp SSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 679999999 89999999999999999999987 7899999999876666666544 677776 555
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.+.+
T Consensus 110 ~~L~~~f~~ 118 (130)
T 3k2j_A 110 LKLQQVMQA 118 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.34 E-value=2 Score=49.59 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=27.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+.+.+|.-+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 34567899999999998886665432 2355555544454444
No 154
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.09 E-value=1.1 Score=52.53 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
.+.+|.-+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999998887776543
No 155
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=81.16 E-value=0.056 Score=54.99 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=59.7
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|.-..+-..|+.. .+|++| ..-
T Consensus 24 ~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 97 (116)
T 3iu5_A 24 QGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEY-----KAA 97 (116)
T ss_dssp TCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 578899999 88999999999999999999876 7789999999877776666654 777777 555
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.+.++.+
T Consensus 98 ~~L~~~f~~~~~ 109 (116)
T 3iu5_A 98 CKLWDLYLRTRN 109 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566655555443
No 156
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.14 E-value=2.2 Score=50.59 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL 1061 (1953)
..+.+|.-+.|+|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4567899999999998887665432 235555554433
No 157
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.43 E-value=2.5 Score=48.83 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=26.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+.+|.-+.|+|||..+-++...+ ..+++.|....+...|
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGN 76 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhcc
Confidence 456788999999999887776554 2356666555554333
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=80.24 E-value=1.1 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=19.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
+.+|.-+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478999999999988877766553
No 159
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.08 E-value=4.1 Score=47.17 Aligned_cols=44 Identities=25% Similarity=0.243 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1002 RPYQleGL~WLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
|+.+++.+...+... ..+...+|.-+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333321 22345689999999999888776665543
No 160
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=79.89 E-value=3.8 Score=45.56 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=23.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
++.-.||+|||...+-.+..... . ..++|++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~-~--~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI-A--QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEccc
Confidence 67889999999666555544433 2 2577888775
No 161
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.81 E-value=2.2 Score=52.24 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=34.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
...|.||.-+.|+|||+.+-++...+ ..+++.|....++..|.-|-.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchHH
Confidence 34677999999999999988776543 236777777777776654443
No 162
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.31 E-value=6.4 Score=45.84 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=17.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (1953)
+.+|.-+.|+|||..+-.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999998776655443
No 163
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=77.77 E-value=2.7 Score=52.44 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=25.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (1953)
...+.+|.-+.|+|||..+-++...+ ..+++.|-...+.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGPEIM 275 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEEEHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEEEchHhh
Confidence 34567899999999998876664322 3455555443343
No 164
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.96 E-value=5.6 Score=46.16 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=27.3
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccCCC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQ 1162 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTPLQ 1162 (1953)
++.+|||||+|.+-.. ...+.+.+..+....+++++.+-..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 6889999999996422 2345556666656667777765433
No 165
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=76.64 E-value=8.5 Score=50.04 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHH-HHHHHHHHHCCCCe
Q 000169 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLV-NWKSELHKWLPSVS 1077 (1953)
Q Consensus 1000 kLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~-QW~~Ef~KwaPslk 1077 (1953)
.|-|.|.++|.. .....++-...|+|||.+.+.-|++|+...+ ....+|+|+.+.... .....+.+..+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~-- 82 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG-- 82 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG--
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc--
Confidence 588999999863 1234566667999999999999999987433 345689999876433 334444433210
Q ss_pred EEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhhh----hcccccCccEEEccccc
Q 000169 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1078 Vvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd~----s~L~kikWd~VIIDEAH 1132 (1953)
....+.|.|+..+.... ........++.|+|+..
T Consensus 83 ---------------------~~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 83 ---------------------AAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ---------------------GGTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ---------------------cccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 11246788887765431 11123345577888754
No 166
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.43 E-value=9.6 Score=50.31 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=71.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH----HcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~----~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..|||..+..-.+......|.++||.+.....+.-+.+.|. ..|+.+..++|+++..+|...++.+..+..+ |+
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~--Iv 475 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID--VV 475 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC--EE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC--EE
Confidence 35888776555444445678999999998876655554443 4489999999999999999999999865444 55
Q ss_pred EEeccccccccCCccCCeEEEcCCC
Q 000169 1401 LLSIRAAGRGLNLQSADTVIIYDPD 1425 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifDpp 1425 (1953)
+.+.......+++...+.||+=+.+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 5555445556788888888874444
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.31 E-value=1.8 Score=55.11 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH
Q 000169 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1008 GL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa 1041 (1953)
.+..+......+...+|.-+.|+|||..+-++..
T Consensus 49 ~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 49 AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3333444444667889999999999977755544
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=75.31 E-value=9.2 Score=46.75 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+|..++.-+..+.-.+|+...|+|||..++.++..... ....++|++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC
Confidence 446666643444545689999999999888887776653 223588888754
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=74.11 E-value=25 Score=43.01 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=35.9
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+|+.++.-+..+.-.+|+...|+|||..++.++..+.... ..+++++...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 35677764455555578999999999988888777665422 2478888743
No 170
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.73 E-value=5.4 Score=46.57 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=25.3
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhcccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L~a~~RLLLTGTP 1160 (1953)
.++++||||+|.+... ...+.+.+..+....+++|+.+.
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4789999999998532 22344555555555667776554
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.93 E-value=6.2 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=18.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (1953)
...+|.-+.|+|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999998887665443
No 172
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.53 E-value=2.5 Score=52.29 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
..|.||.-+.|+|||+.+-++...+- .+++.|....++..|.-|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSSSH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccchH
Confidence 45678999999999999888775532 366666666666655443
No 173
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.16 E-value=2.3 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=18.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (1953)
..+.+|.-+.|+|||..+-++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45668999999999988766654
No 174
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=70.79 E-value=6.7 Score=45.59 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=26.9
Q ss_pred HHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1012 MLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1012 LlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
+........+.+|.-|+|+|||..+-++.... ....+|++.|-
T Consensus 18 ~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~ 60 (304)
T 1ojl_A 18 IAMVAPSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLN 60 (304)
T ss_dssp HHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEE
T ss_pred HHHHhCCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEe
Confidence 33333456778999999999998775544321 12335666554
No 175
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=70.62 E-value=15 Score=45.85 Aligned_cols=86 Identities=15% Similarity=0.292 Sum_probs=56.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecc-----------hh--
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGA-----------KD-- 1086 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaPslkVvvy~Gs-----------~d-- 1086 (1953)
.-.|..-+|+|||+.+..++.. ..+|+|||||.. ...+|..++..|+|.. |.+|-.. .+
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~ 88 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDII 88 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHH
Confidence 3467778999999887766632 246899999976 6788999999998865 4443321 11
Q ss_pred -hHhHHHHHHHhhccccEEEEeHHHHHhh
Q 000169 1087 -QRSRLFSQEVAALKFNVLVTTYEFIMYD 1114 (1953)
Q Consensus 1087 -eRk~l~~qei~~~~fdVVITTYEsL~kd 1114 (1953)
.|-..+. ........|||||...+...
T Consensus 89 ~~Rl~~l~-~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 89 SSRLSTLY-QLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHHHH-HGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHH-HHHhCCCCEEEEEHHHHhhc
Confidence 1111111 12234557999999988743
No 176
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.08 E-value=19 Score=40.01 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCeEEEEec----chhhHhHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVG----AKDQRSRLF 1092 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~KwaPslkVvvy~G----s~deRk~l~ 1092 (1953)
..+.++.-..|.|||-.++++...... ...+++||- +.. ...=..++.+-++ +.+..+.- ....+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---~G~rV~~vQF~Kg~-~~~gE~~~l~~L~-v~~~~~g~gf~~~~~~~~~-- 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---HGKNVGVVQFIKGT-WPNGERNLLEPHG-VEFQVMATGFTWETQNREA-- 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---TTCCEEEEESSCCS-SCCHHHHHHGGGT-CEEEECCTTCCCCGGGHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCC-CCccHHHHHHhCC-cEEEEcccccccCCCCcHH--
Confidence 345678888999999999998887764 234777773 210 0000011111121 22221110 0100000
Q ss_pred HHHHhhccccEEEEeHHHHHhhhhcccccCccEEEcccccccCC----chhHHHHHhhhcccceeEEecccCCCCCHHHH
Q 000169 1093 SQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKEL 1168 (1953)
Q Consensus 1093 ~qei~~~~fdVVITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN----~~SKlsraLk~L~a~~RLLLTGTPLQNnL~EL 1168 (1953)
.... --..+..-...+..-.|++||+||.-.+.+ ....+...|..-+...-++|||- +-+.+|
T Consensus 101 --~~~~--------a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr---~ap~~l 167 (196)
T 1g5t_A 101 --DTAA--------CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR---GCHRDI 167 (196)
T ss_dssp --HHHH--------HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS---SCCHHH
T ss_pred --HHHH--------HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC---CCcHHH
Confidence 0000 012222334556667899999999854311 23345556665566678999994 456666
Q ss_pred HHHHhhh
Q 000169 1169 WSLLNLL 1175 (1953)
Q Consensus 1169 wSLLnFL 1175 (1953)
..+-+++
T Consensus 168 ~e~AD~V 174 (196)
T 1g5t_A 168 LDLADTV 174 (196)
T ss_dssp HHHCSEE
T ss_pred HHhCcce
Confidence 6655544
No 177
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=68.94 E-value=7.6 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=16.7
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (1953)
+.||.-+.|+|||..+-++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 569999999999977755543
No 178
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.87 E-value=1.8 Score=53.38 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=31.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
..|.||.-+.|+|||+.+-++...+ ..+++.|....++..|.-+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccch
Confidence 4567899999999999987776543 2367777777776666443
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=68.64 E-value=8.9 Score=43.14 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=18.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
.+.+|.-+.|+|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35688999999999888766654
No 180
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=68.60 E-value=0.27 Score=50.00 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=51.3
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~~ 1799 (1953)
..+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|| ..-..|
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L 102 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFST-IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG-----RAGHNM 102 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH-----HHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 456888 88888999999999999999876 7789999999877666666543 667766 444444
Q ss_pred chhhh
Q 000169 1800 QPKIK 1804 (1953)
Q Consensus 1800 q~~~~ 1804 (1953)
+-.|.
T Consensus 103 ~~~f~ 107 (117)
T 3g0l_A 103 RKYFE 107 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 181
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=67.96 E-value=12 Score=42.82 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=24.8
Q ss_pred ccEEEcccccccCC----chhHHHHHhhhc---ccceeEEecccC
Q 000169 1123 WKYIIIDEAQRMKD----RESVLARDLDRY---RCQRRLLLTGTP 1160 (1953)
Q Consensus 1123 Wd~VIIDEAHrLKN----~~SKlsraLk~L---~a~~RLLLTGTP 1160 (1953)
.-+|||||+|.+.. ........|..+ ....++++||++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 56899999999864 122334444433 245688999976
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.76 E-value=3.6 Score=50.83 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (1953)
..|.||.-+.|+|||+.+-++...+- .+++.|....++..|.-|-.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCchHH
Confidence 45678999999999999887775532 36777777777766654433
No 183
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=67.62 E-value=14 Score=44.03 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
..|+.++.-+..+.=.||+...|.|||..++.++..+.. ...++|++...
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 346666643444444689999999999988888776654 34588888753
No 184
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.94 E-value=13 Score=49.15 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
..+.+|.-+.|+|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 346799999999999888777766543
No 185
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=66.65 E-value=19 Score=46.69 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
...+.+|.-+.|+|||..+-++...+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999988877766554
No 186
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=66.30 E-value=0.48 Score=50.70 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=52.8
Q ss_pred cccccc-cCCCccc--cCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcccc
Q 000169 1731 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k--~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~ 1797 (1953)
..+.+| .+|+..+ +|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|+ .+-.
T Consensus 48 ~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~-----~~A~ 121 (154)
T 4alg_A 48 QFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGT-IKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIV-----LMAQ 121 (154)
T ss_dssp TTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred cCchhhcCCCChhhccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 567899 8888774 9999999999999876 7789999999887777667654 778877 4444
Q ss_pred ccchhhhc
Q 000169 1798 VLQPKIKR 1805 (1953)
Q Consensus 1798 ~~q~~~~~ 1805 (1953)
.|+-.|.+
T Consensus 122 ~L~~~f~~ 129 (154)
T 4alg_A 122 TLEKIFLQ 129 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 187
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=66.16 E-value=0.44 Score=48.12 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=46.2
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
..+.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|++|
T Consensus 23 ~~~~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~ 90 (112)
T 3d7c_A 23 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC 90 (112)
T ss_dssp GGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CCchhhcCCCCcccccCHHHHccCCcCHHH-HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456889 88888899999999999999876 7789999999876665555544 566666
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=65.04 E-value=9.7 Score=44.78 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHH-Hhh-c----CCCCeEE--EcCCCchHHHHHHHHHHHHH
Q 000169 1002 RDYQIVGLQWML-SLY-N----NKLNGIL--ADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1002 RPYQleGL~WLl-sL~-~----n~lnGIL--ADEMGLGKTIQAIALIa~Ll 1044 (1953)
|+.+++.|..++ ... . .....+| .-+.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 556666554444 322 1 2234566 79999999988877665544
No 189
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=64.31 E-value=0.35 Score=49.13 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=45.5
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
.+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|++|
T Consensus 33 ~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~ 99 (116)
T 3nxb_A 33 DSWPFLEPVDESYAPNYYQIIKAPMDISS-MEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT 99 (116)
T ss_dssp TCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHhhcCcCChhhccChHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 35788 88888899999999999999877 7789999999877666666543 666666
No 190
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=63.70 E-value=23 Score=37.80 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=29.3
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000169 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (1953)
Q Consensus 1007 eGL~WLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (1953)
.+|++++. -+..+.-.+|+-+.|+|||..+..++. . . .+++++|.-
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~-~--~~~v~~i~~ 53 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L-S--GKKVAYVDT 53 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H-H--CSEEEEEES
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H-c--CCcEEEEEC
Confidence 34555553 333444467899999999988776665 1 2 246677663
No 191
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=63.63 E-value=23 Score=41.99 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=66.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfL 1401 (1953)
..+||-.+..-.+..+...+.++||.+.....+.-+.+.|.. .++.+..++|+++..+|...++.+..++. .|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~--~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDY--HILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCC--SEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCC--CEEE
Confidence 457887644433334446788999999999998888888877 58899999999999888888888876433 4555
Q ss_pred Eecccccc---ccCCccCCeEEE
Q 000169 1402 LSIRAAGR---GLNLQSADTVII 1421 (1953)
Q Consensus 1402 LSTrAGGe---GLNLQaADtVIi 1421 (1953)
.+....-. -+++...++||+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 55443311 134455666555
No 192
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=63.44 E-value=0.68 Score=47.38 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=44.6
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
.+.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+++
T Consensus 25 ~~~~F~~PVd~~~~pdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~ 91 (117)
T 2i7k_A 25 PSAFFSFPVTDFIAPGYSMIIKHPMDFST-MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYY 91 (117)
T ss_dssp GGGTSSSCCCTTTSSSHHHHCSCCCCHHH-HHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHH
T ss_pred ccHHhcCCCCccccCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34677 77778889999999999999877 7789999999876666656544 667766
No 193
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=63.40 E-value=0.53 Score=48.33 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=52.2
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~ 1798 (1953)
+..+.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|++| ..-..
T Consensus 28 ~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~ 101 (121)
T 1e6i_A 28 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANR 101 (121)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhCCCCChhhCcCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3467889 88898999999999999999877 7789999999876666556554 667776 44444
Q ss_pred cchhhh
Q 000169 1799 LQPKIK 1804 (1953)
Q Consensus 1799 ~q~~~~ 1804 (1953)
|+-.+.
T Consensus 102 L~~~f~ 107 (121)
T 1e6i_A 102 LEKFFN 107 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 194
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=63.26 E-value=16 Score=39.03 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=24.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+.+|.-+.|+|||..+.++...+.. ...++++|.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE
Confidence 56789999999999988777766542 224555554
No 195
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=63.16 E-value=0.57 Score=50.36 Aligned_cols=58 Identities=10% Similarity=-0.001 Sum_probs=47.8
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
+..+.|| .+|+.+.+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|+
T Consensus 45 ~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~ 113 (158)
T 3uv4_A 45 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYT 113 (158)
T ss_dssp STTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCchhhcCcCChhhcccHHHHcCCccCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4456788 88899999999999999999876 7789999999877666666644 778777
No 196
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.14 E-value=3.3 Score=50.99 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
..|.||.-+.|+|||..+-++...+ ..+++.|....++..|.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhcccc
Confidence 4567899999999999988776554 13666666666655543
No 197
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.83 E-value=3.9 Score=50.94 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (1953)
...|.||.-+.|+|||+.+-++...+- .+++.|....++..|.-|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSSSH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccCCH
Confidence 345678999999999999877765432 366777666676655443
No 198
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=62.27 E-value=0.42 Score=49.79 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=51.5
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------C-CCccccCCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~-~s~~~~~~~~e~~~~~ 1799 (1953)
.+.+| .+|+...+|+|+.++++|++++- +-..|+.|+|....+-..|+.. . +|+|| .+-..|
T Consensus 38 ~s~~F~~pv~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 111 (135)
T 3mb3_A 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFAT-VRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIY-----SMSLRL 111 (135)
T ss_dssp GGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHH-----HHHHHH
T ss_pred CChhhcCCCChhhCCCHHHHhCCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 36888 88899999999999999999876 7789999999877776666654 4 78887 554455
Q ss_pred chhh
Q 000169 1800 QPKI 1803 (1953)
Q Consensus 1800 q~~~ 1803 (1953)
+-.|
T Consensus 112 ~~~f 115 (135)
T 3mb3_A 112 SAFF 115 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=62.08 E-value=14 Score=45.49 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=23.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+++-..|+|||-++..++.++.. . .+++++|+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~-~--G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK-R--GYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH-T--TCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEEe
Confidence 466788999999988888777654 2 34565555
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.00 E-value=16 Score=48.56 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=28.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (1953)
..+.||.-+.|+|||+.+-++...+ ..+++.|....++..|.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWF 552 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhcccc
Confidence 4567999999999998887666432 23555555566666664
No 201
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.50 E-value=0.55 Score=48.28 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=49.8
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~~q 1800 (1953)
.+.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|++| ..-..|+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 97 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDHIKKPMDFFT-MKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY-----RAAVRLR 97 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHHcCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45788 88888899999999999999877 7789999999877666666554 677777 4444454
No 202
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=60.45 E-value=43 Score=35.41 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=59.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhccccE
Q 000169 1026 DEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNV 1103 (1953)
Q Consensus 1026 DEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fdV 1103 (1953)
---|.|||..++.+..++.. .+ .++|+|- |...+..|... . ...+++
T Consensus 9 ~kgG~GKTt~a~~la~~la~-~g--~~vlliD~D~~~~~~~~~~~----~------------------------~~~~~~ 57 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR-SG--YNIAVVDTDPQMSLTNWSKA----G------------------------KAAFDV 57 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TT--CCEEEEECCTTCHHHHHHTT----S------------------------CCSSEE
T ss_pred CCCCccHHHHHHHHHHHHHH-CC--CeEEEEECCCCCCHHHHHhc----C------------------------CCCCcE
Confidence 44689999999998888875 32 3667665 44455555431 0 112344
Q ss_pred EEEeHHHHHhhhhcccccCccEEEcccccccCCchhHHHHHhhhcccceeEEecccCCCCCHHHHHHHHhhh
Q 000169 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (1953)
Q Consensus 1104 VITTYEsL~kd~s~L~kikWd~VIIDEAHrLKN~~SKlsraLk~L~a~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (1953)
+-...+.+......+.. .+++||||=.-.+ + .....+.. .++. +++-.+|-... ..+..++.++
T Consensus 58 ~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~-~---~~~~~~l~-~ad~-viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 58 FTAASEKDVYGIRKDLA-DYDFAIVDGAGSL-S---VITSAAVM-VSDL-VIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EECCSHHHHHTHHHHTT-TSSEEEEECCSSS-S---HHHHHHHH-HCSE-EEEEECSCTTT-HHHHHHHHHH
T ss_pred EecCcHHHHHHHHHhcC-CCCEEEEECCCCC-C---HHHHHHHH-HCCE-EEEEecCCHHH-HHHHHHHHHH
Confidence 44444444444444433 5899999976554 2 11111111 1333 33333444445 5666666555
No 203
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=60.27 E-value=14 Score=43.77 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
..+.+|.-++|+|||..+-++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999887666543
No 204
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=60.19 E-value=0.39 Score=51.76 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=52.9
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~ 1798 (1953)
+..+.+| .+|+...+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+++ ..-..
T Consensus 87 ~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 160 (174)
T 2ri7_A 87 HKMAWPFLEPVDPNDAPDYYGVIKEPMDLAT-MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY-----QCAEV 160 (174)
T ss_dssp SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred hhhhhhhhcCCCcccCCchHHHhCCcCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 4566888 88888999999999999999877 7789999999876665555544 667776 55555
Q ss_pred cchhhhc
Q 000169 1799 LQPKIKR 1805 (1953)
Q Consensus 1799 ~q~~~~~ 1805 (1953)
|+-.|.+
T Consensus 161 L~~~f~~ 167 (174)
T 2ri7_A 161 LESFFVQ 167 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 205
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=59.96 E-value=0.69 Score=47.63 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
.+.+| .+|+...+|+|++++++|++++. +-..|+.|+|....+-..|+.. .+|++|
T Consensus 30 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~ 96 (123)
T 3hme_A 30 PHGFFAFPVTDAIAPGYSMIIKHPMDFGT-MKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYY 96 (123)
T ss_dssp TTCSSSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred ccHhhcCCCChhhccCHHHHCCCCCCHHH-HHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 34678 88888899999999999999876 7789999999877666666543 667666
No 206
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=59.73 E-value=24 Score=45.13 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNA 1060 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~S 1060 (1953)
..+.+++-.+|+|||...-.+|+.++.... ..-.+++|=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 457899999999999998888888774322 122345555764
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=59.72 E-value=12 Score=38.96 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=19.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000169 1018 NKLNGILADEMGLGKTVQVMALIAYLM 1044 (1953)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (1953)
.+...+|.-+.|+|||..+-++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355567899999999987766655443
No 208
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=58.79 E-value=0.6 Score=56.22 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=62.3
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+.+.++.+| .+|+...+|+|++++++|++++. +-..|+.|+|....+-..|+.. .+|+|| .+-
T Consensus 226 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~-----~~A 299 (361)
T 2r10_A 226 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSI-VKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIY-----KDA 299 (361)
T ss_dssp CSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHH-HHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCcchhcccCCCChhhcccHHHHhcCcccHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 578899999 99999999999999999999877 7789999999887776666655 789998 777
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.|.++-+
T Consensus 300 ~~L~~~f~~~~~ 311 (361)
T 2r10_A 300 TTLTNYFNYLIQ 311 (361)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666443
No 209
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=58.74 E-value=16 Score=44.89 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
..+|+.++.-+..+.-.||+...|.|||..++.++...... ..++|++.-.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 34567776544445457999999999999998888777642 3578888743
No 210
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=57.66 E-value=18 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+++-..|+|||-++..++.++.. . ..++++|+
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~-~--G~kVllv~ 135 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK-R--GYKVGVVC 135 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT-T--TCCEEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH-C--CCeEEEEe
Confidence 467788999999999888877753 2 23555555
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=56.62 E-value=19 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (1953)
.+.+|.-++|+|||..+-++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999988766654
No 212
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=56.43 E-value=0.61 Score=48.32 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=51.9
Q ss_pred ccccccc-cCCCc--cccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1730 RRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~--~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+..+.+| .+|+. ..+++|+.++++|++++. +-.+|+.|+|....+-..|+.. .||+|| ..-
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~A 109 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT-IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV-----LMA 109 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3456788 77775 479999999999999877 7789999999877666666554 677777 555
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.+.+
T Consensus 110 ~~L~~~f~~ 118 (127)
T 2oss_A 110 EALEKLFLQ 118 (127)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 213
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=56.35 E-value=53 Score=37.42 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=24.0
Q ss_pred CccEEEcccccccCCc-hhHHHHHhhhc---ccceeEEecccC
Q 000169 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRY---RCQRRLLLTGTP 1160 (1953)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlsraLk~L---~a~~RLLLTGTP 1160 (1953)
+.-+|||||+|.+... ...+...|..+ .....+++||++
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~ 179 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSE 179 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESS
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCc
Confidence 3568999999998542 11222233322 235689999986
No 214
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=55.84 E-value=0.52 Score=49.01 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=50.6
Q ss_pred cccccc-cCCCccc--cCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcccc
Q 000169 1731 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k--~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~ 1797 (1953)
.++.|| .+|+..+ +|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+|| ..-.
T Consensus 41 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~-----~~A~ 114 (130)
T 2ouo_A 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----AMAR 114 (130)
T ss_dssp HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred hhHHHhcCCCChhhccCCcHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHHH
Confidence 356788 7777665 9999999999999876 7789999999876666556544 677777 4545
Q ss_pred ccchhhhc
Q 000169 1798 VLQPKIKR 1805 (1953)
Q Consensus 1798 ~~q~~~~~ 1805 (1953)
.|+-.|.+
T Consensus 115 ~L~~~f~~ 122 (130)
T 2ouo_A 115 KLQDVFEM 122 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 215
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=55.62 E-value=0.38 Score=49.12 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=54.2
Q ss_pred ccccccc-cCCCccc--cCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1730 RRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k--~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
..++.|| .+|+... +|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+|| ..-
T Consensus 27 ~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A 100 (120)
T 3jvl_A 27 AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----AMA 100 (120)
T ss_dssp HHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred ccccchhcCCCCchhcCCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3457889 8889888 9999999999999876 7789999999877666666543 678777 555
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.+.+
T Consensus 101 ~~L~~~f~~ 109 (120)
T 3jvl_A 101 RKLQDVFEM 109 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655554
No 216
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=55.62 E-value=34 Score=47.04 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=70.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
..+||..+....+-.+...+.+|||.+..+..+.-+.+.|.. .++.+..++|..+..++...++.+..+. +.|+
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIv 710 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDIL 710 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEE
Confidence 357888776555555556788999999998877666655553 3678899999999999999999888644 4466
Q ss_pred EEeccccccccCCccCCeEEE
Q 000169 1401 LLSIRAAGRGLNLQSADTVII 1421 (1953)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIi 1421 (1953)
+.+.......+++...+.||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 666666666778887877776
No 217
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=55.20 E-value=17 Score=49.83 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=53.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcccc
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~KwaPslkVvvy~Gs~deRk~l~~qei~~~~fd 1102 (1953)
|+| ..|+|||.+.+.-|.+++.......++|+|||....-+-...+.+..+. ....+
T Consensus 6 V~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~~----------------------~~~~~ 62 (1166)
T 3u4q_B 6 LVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDM----------------------GGMIR 62 (1166)
T ss_dssp EEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSSC----------------------SEESS
T ss_pred EEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhhh----------------------cceee
Confidence 455 4899999999999999997655457899999998665533333332210 11246
Q ss_pred EEEEeHHHHHhhhhccccc-CccEEEccccc
Q 000169 1103 VLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQ 1132 (1953)
Q Consensus 1103 VVITTYEsL~kd~s~L~ki-kWd~VIIDEAH 1132 (1953)
|.|.|+..+.... |... .....|+|+..
T Consensus 63 ~~V~TFhsla~~i--l~~~g~~~~~ild~~~ 91 (1166)
T 3u4q_B 63 AQVFSFSRLAWRV--LQHTGGMSRPFLTSTG 91 (1166)
T ss_dssp EEEECHHHHHHHH--HHHHSCTTSCEECHHH
T ss_pred eEEecHHHHHHHH--HHHcCCCcccCcCHHH
Confidence 8889988776431 1111 23445667653
No 218
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=55.15 E-value=0.63 Score=55.07 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=62.1
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+++.++.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|| .+-
T Consensus 176 ~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~-----~~A 249 (311)
T 2r0y_A 176 DKVKLSEPFMELVDKDELPEYYEIVHSPMALSI-VKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIY-----KDA 249 (311)
T ss_dssp CSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred cCCccHHHHhCCCChhhcccHHHHhCCccCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHH-----HHH
Confidence 578899999 99999999999999999999877 7789999999877666666554 789998 777
Q ss_pred cccchhhhcccc
Q 000169 1797 QVLQPKIKRKRS 1808 (1953)
Q Consensus 1797 ~~~q~~~~~krs 1808 (1953)
..|+-.+.++-+
T Consensus 250 ~~L~~~f~~~~~ 261 (311)
T 2r0y_A 250 TTLTNYFNYLIQ 261 (311)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778877666443
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=54.51 E-value=14 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=19.0
Q ss_pred CeEEEcCCCchHHHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIAYL 1043 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~L 1043 (1953)
+.+|.-++|+|||..+-++...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999887776655
No 220
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=54.33 E-value=22 Score=41.53 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=34.6
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+|..++.-+..+.-.||+...|+|||..++.++..... .+ .++|++.-.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLE 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESS
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECC
Confidence 456666543444555799999999999888877766543 22 688888843
No 221
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=53.96 E-value=0.97 Score=47.08 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=50.8
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~ 1798 (1953)
+..+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|++| .+-..
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 101 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFAT-MRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFY-----RAAVR 101 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3456788 88888999999999999999876 7789999999877666666654 677777 45445
Q ss_pred cc
Q 000169 1799 LQ 1800 (1953)
Q Consensus 1799 ~q 1800 (1953)
|+
T Consensus 102 L~ 103 (135)
T 3rcw_A 102 LR 103 (135)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 222
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=50.79 E-value=0.98 Score=46.01 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=44.9
Q ss_pred cccccc-cCCCcc--ccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1731 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~--k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
..+.|| .+|+.. .+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|++|
T Consensus 28 ~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~ 97 (119)
T 3p1f_A 28 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY 97 (119)
T ss_dssp TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CCCchhcCCCCchhccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 466788 788877 69999999999999876 7789999999876665555543 666666
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=50.46 E-value=44 Score=37.01 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=16.3
Q ss_pred CCeEEEcCCCchHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALI 1040 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALI 1040 (1953)
.|.+|.-+.|+|||..+-++.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 346899999999997765544
No 224
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=50.33 E-value=34 Score=46.95 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=71.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHH---cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEE
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~---rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfL 1401 (1953)
..+||-.+..-.+..+...+.++||.+..+..+.-+.+.|.. .++.+..++|+++..+|...++.+..++.+ |++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~--IlV 179 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYH--ILV 179 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCS--EEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCC--EEE
Confidence 458898765555555557788999999999999888888887 578999999999998888888888864444 555
Q ss_pred Eecccccc---ccCCccCCeEEEcCC
Q 000169 1402 LSIRAAGR---GLNLQSADTVIIYDP 1424 (1953)
Q Consensus 1402 LSTrAGGe---GLNLQaADtVIifDp 1424 (1953)
.+....-. -+++...++||+=+.
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred ECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 55443311 145667777776433
No 225
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.95 E-value=53 Score=35.61 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=31.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
+.-.+|+-+.|+|||..++.++..+.. ..++++++.-.....++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~~~~~~~~~ 70 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEHPVQVRQNM 70 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCCHHHHHHHH
Confidence 444578889999999988887776653 235778877543333333333
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=49.86 E-value=30 Score=40.29 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=26.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
+.+.+|.-++|+|||..+.++...+....+ .++++|.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 456789999999999999888877762222 3555544
No 227
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=49.10 E-value=1.7 Score=45.12 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=42.1
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
.+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+..
T Consensus 27 ~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 77 (130)
T 3dai_A 27 RFRVFTKPVDPDEVPDYVTVIKQPMDLSS-VISKIDLHKYLTVKDYLRDIDL 77 (130)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred ccHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46788 88999999999999999999876 7789999999877766666654
No 228
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=46.81 E-value=4.3 Score=41.62 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=50.9
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------C-CCccccCCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~-~s~~~~~~~~e~~~~~ 1799 (1953)
.+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. . +|+|| .+-..|
T Consensus 27 ~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 100 (123)
T 3q2e_A 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGT-VRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIY-----SMTLRL 100 (123)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHH-----HHHHHH
T ss_pred CcHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 46888 88899999999999999999876 7899999999876666656543 2 67777 444555
Q ss_pred chhhh
Q 000169 1800 QPKIK 1804 (1953)
Q Consensus 1800 q~~~~ 1804 (1953)
+-.+.
T Consensus 101 ~~~f~ 105 (123)
T 3q2e_A 101 SALFE 105 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 229
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.64 E-value=13 Score=42.26 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (1953)
.++.++....|+|||..++.+...+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 456788899999999999999988875
No 230
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=46.37 E-value=46 Score=37.57 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.3
Q ss_pred CeEEEcCCCchHHHHHHHHHH
Q 000169 1021 NGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa 1041 (1953)
+.+|.-+.|+|||..+-++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 468999999999977655543
No 231
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=45.97 E-value=28 Score=41.97 Aligned_cols=56 Identities=18% Similarity=0.064 Sum_probs=38.4
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000169 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (1953)
Q Consensus 1007 eGL~WLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (1953)
.+|++++. -+..+.-.+|+-+.|+|||..++.++..... ..+++++|.......+|
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH
Confidence 35666664 3344445688999999999999888877653 23578888865544444
No 232
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=45.94 E-value=1.1 Score=48.57 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=48.3
Q ss_pred cccccc-cCCCcc--ccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcccc
Q 000169 1731 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~--k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~ 1797 (1953)
..+.+| .+|+.. .+|+|+.++++|++++. +-.+|+.|+|....+-..|+.. .+|+|+ ..-.
T Consensus 37 ~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A~ 110 (166)
T 3fkm_X 37 EGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSC-IKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVA-----ITGK 110 (166)
T ss_dssp TTGGGGSSCCC-----CCCGGGCCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHH-----HHHH
T ss_pred CCChhhcCCCChhhccCCCHHHhcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 345788 777755 59999999999999876 7789999999877666666644 788888 4444
Q ss_pred ccchhh
Q 000169 1798 VLQPKI 1803 (1953)
Q Consensus 1798 ~~q~~~ 1803 (1953)
.|+-.|
T Consensus 111 ~L~~~f 116 (166)
T 3fkm_X 111 NIETYF 116 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 233
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=44.69 E-value=81 Score=37.01 Aligned_cols=89 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred cccHHHHHHHHHHHH-HhcCCeeEEeechhHHHHHHHHHHHHc-CC---eEEeecCCCCHHHHHHHHHHhhcCCCCccEE
Q 000169 1326 SCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWR-QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kL-katGhKVLIFSQft~~LDILed~L~~r-Gi---kylRLDGsTs~eeRqeaIerFNs~ds~ifVf 1400 (1953)
.+||-....-++..+ ...+.++||.+.....+.-..+.|... ++ .+..++|+....++...... ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEE
Confidence 478876655554443 346789999999988877666666544 66 89999999998876655432 2356
Q ss_pred EEecccccc-----ccCCccCCeEEE
Q 000169 1401 LLSIRAAGR-----GLNLQSADTVII 1421 (1953)
Q Consensus 1401 LLSTrAGGe-----GLNLQaADtVIi 1421 (1953)
+++...... .+++...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 666554432 356677777776
No 234
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=43.97 E-value=25 Score=45.74 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (1953)
+.+..-|.++|..+..... +. .+|-..=|.|||..+..++..+. +.++|.+|+.
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~~-~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~ 227 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-GV-AAVTAARGRGKSALAGQLISRIA------GRAIVTAPAK 227 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-EE-EEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSC
T ss_pred CCCCHHHHHHHHHHHHhhh-Ce-EEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCH
Confidence 4678899999988876543 22 35555699999955544444432 2457778864
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.59 E-value=69 Score=40.20 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa 1041 (1953)
.+.+|.-+.|+|||..+-++..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999987755543
No 236
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=42.23 E-value=2.2 Score=49.27 Aligned_cols=66 Identities=11% Similarity=0.060 Sum_probs=52.3
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCccccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~~q 1800 (1953)
.+.+| .+|+.+.+|+|+.++++|++++. +-..|+.|.|.-..+-..|+.. .+|+|| ..-..|+
T Consensus 31 ~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~l~ 104 (265)
T 3uv5_A 31 NTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSML 104 (265)
T ss_dssp TCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHHH
T ss_pred CchhhhCCCChhhcCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHH-----HHHHHHH
Confidence 46788 88899999999999999999977 7899999999877666666654 788888 5555555
Q ss_pred hhh
Q 000169 1801 PKI 1803 (1953)
Q Consensus 1801 ~~~ 1803 (1953)
-.+
T Consensus 105 ~~~ 107 (265)
T 3uv5_A 105 DLC 107 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 237
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=41.62 E-value=1.6 Score=51.06 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=52.6
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~~ 1799 (1953)
..+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|| .+-..|
T Consensus 186 ~~s~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~-----~~A~~L 259 (292)
T 3aad_A 186 PDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYT-----KTAQEI 259 (292)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHH-----HHHHHH
T ss_pred cchhHHHhcccccccccHHHHcCCcCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346788 88888899999999999999877 7789999999877666666654 678887 555555
Q ss_pred chhhh
Q 000169 1800 QPKIK 1804 (1953)
Q Consensus 1800 q~~~~ 1804 (1953)
+-.+.
T Consensus 260 ~~~~~ 264 (292)
T 3aad_A 260 VNVCY 264 (292)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=41.11 E-value=28 Score=46.19 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=27.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000169 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (1953)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (1953)
.|.||.-..|+|||..+=++... ...+++.|....++..|..+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e------lg~~~~~v~~~~l~sk~~ges 282 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE------TGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT------TTCEEEEEEHHHHHSSCTTHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH------hCCeEEEEEhHHhhcccchHH
Confidence 45689999999999887665532 123444444455665554433
No 239
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=40.60 E-value=1.7 Score=50.04 Aligned_cols=68 Identities=10% Similarity=-0.003 Sum_probs=51.9
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccccCCCCcccccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~~~~ 1799 (1953)
..+.|| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+|+ .+-..|
T Consensus 153 ~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~-----~~A~~l 226 (265)
T 3uv5_A 153 PDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYT-----KTAQEI 226 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHH-----HHHHHH
T ss_pred hhhHHHhCCCChhHhCcHHHHhCCcccHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 345788 88888999999999999999876 7789999999877666666543 778887 555555
Q ss_pred chhhh
Q 000169 1800 QPKIK 1804 (1953)
Q Consensus 1800 q~~~~ 1804 (1953)
+-.+.
T Consensus 227 ~~~~~ 231 (265)
T 3uv5_A 227 VNVCY 231 (265)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 240
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=40.00 E-value=1.5e+02 Score=31.84 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=55.7
Q ss_pred hcccHHHHHHHHH-HHHHh--cCCeeEEeechhHHHHHHHHHHHHc-----CCeEEeecCCCCHHHHHHHHHHhhcCCCC
Q 000169 1325 KSCGKLWILDRIL-IKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1325 ~~SGKLelLdrIL-~kLka--tGhKVLIFSQft~~LDILed~L~~r-----GikylRLDGsTs~eeRqeaIerFNs~ds~ 1396 (1953)
..+||-....-.+ ..+.. .+.++||.+.....+.-+.+.+... ++.+..++|+.+...+...+.. ..
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~~-- 134 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NC-- 134 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SC--
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---CC--
Confidence 3478865433322 22222 2348999999988887777666554 7889999999987666554433 22
Q ss_pred ccEEEEecccc-----ccccCCccCCeEEE
Q 000169 1397 CFIFLLSIRAA-----GRGLNLQSADTVII 1421 (1953)
Q Consensus 1397 ifVfLLSTrAG-----GeGLNLQaADtVIi 1421 (1953)
..|++.+.... ...+++...++||+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 23444443322 23456777777776
No 241
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=37.51 E-value=1.8e+02 Score=32.35 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=54.5
Q ss_pred hcccHHHH-HHHHHHHHHhc--CCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCCCc
Q 000169 1325 KSCGKLWI-LDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 1397 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLkat--GhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds~i 1397 (1953)
..+||-.. +.-++..+... +.++||.+..+..+.-+.+.+.. .++.+..+.|+.........+ .. .+
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CC
Confidence 45788654 33444444433 35799999988877666655543 388899999998865544333 21 23
Q ss_pred cEEEEecccc------ccccCCccCCeEEE
Q 000169 1398 FIFLLSIRAA------GRGLNLQSADTVII 1421 (1953)
Q Consensus 1398 fVfLLSTrAG------GeGLNLQaADtVIi 1421 (1953)
.|++.+.... ..++++...++||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 3444443322 23466777777765
No 242
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=37.42 E-value=1.7e+02 Score=32.03 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=55.1
Q ss_pred hcccHHHH-HHHHHHHHH-------hcCCeeEEeechhHHHHHHH----HHHHHcCCeEEeecCCCCHHHHHHHHHHhhc
Q 000169 1325 KSCGKLWI-LDRILIKLQ-------RTGHRVLLFSTMTKLLDILE----EYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLk-------atGhKVLIFSQft~~LDILe----d~L~~rGikylRLDGsTs~eeRqeaIerFNs 1392 (1953)
..+||-.+ +.-++..+. ..+.++||.+..+..+.-+. .++...++.+..++|+.+.......+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 45788654 444444443 24667999998887665544 4445568999999999987766554432
Q ss_pred CCCCccEEEEecccc-----ccccCCccCCeEEE
Q 000169 1393 HDSDCFIFLLSIRAA-----GRGLNLQSADTVII 1421 (1953)
Q Consensus 1393 ~ds~ifVfLLSTrAG-----GeGLNLQaADtVIi 1421 (1953)
.+.|++.+.... ...+++...++||+
T Consensus 152 ---~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ---CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ---CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 233444443222 12346677777765
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=35.69 E-value=50 Score=38.79 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=21.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
++.-..|+|||-.+..+...+.. ..+.++++.
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~ 139 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAA 139 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEc
Confidence 56678999999888776655543 234666655
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=34.53 E-value=57 Score=38.87 Aligned_cols=56 Identities=16% Similarity=0.006 Sum_probs=36.8
Q ss_pred HHHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1006 IVGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1006 leGL~WLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
..+|++++. -+..+.-.+|+-+.|+|||..++.++..... ..+++++|.-......
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDP 103 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCH
Confidence 345666664 3334444678899999999998888776653 2357788775443333
No 245
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=34.26 E-value=3.6 Score=48.17 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=45.9
Q ss_pred cccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc----------CCCccc
Q 000169 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (1953)
Q Consensus 1731 ~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~----------~~s~~~ 1788 (1953)
..+.+| .+|+...+|+|+.++++|++++. +-..|+.|+|....+-..|+.. .+|+||
T Consensus 63 ~~a~~F~~pV~~~~~pdY~~iIk~PmDL~t-Ik~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~ 130 (292)
T 3aad_A 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT 130 (292)
T ss_dssp TTCGGGSSSCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH
T ss_pred CcchhhcCCCCchhcccHHHHcCCcCCHHH-HHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 346788 88888999999999999999876 7788999999876665555544 678777
No 246
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=34.02 E-value=72 Score=37.59 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=22.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
++.-..|.|||-.+..+..++.. ..+.+|++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEe
Confidence 45677999999888777666543 245677765
No 247
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=32.95 E-value=1.3e+02 Score=32.86 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=55.3
Q ss_pred hcccHHHH-HHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHHc-----CCeEEeecCCCCHHHHHHHHHHhhcCCCC
Q 000169 1325 KSCGKLWI-LDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~r-----GikylRLDGsTs~eeRqeaIerFNs~ds~ 1396 (1953)
..+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.+... ++.+..++|+.+..++...+ + .
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~ 142 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----K 142 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----S
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----C
Confidence 35788765 444454442 23568999999988887777776653 67888999998876654433 2 2
Q ss_pred ccEEEEecccc-----ccccCCccCCeEEE
Q 000169 1397 CFIFLLSIRAA-----GRGLNLQSADTVII 1421 (1953)
Q Consensus 1397 ifVfLLSTrAG-----GeGLNLQaADtVIi 1421 (1953)
+.|++.+.... ...+++...+.||+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 34544444322 12345556666554
No 248
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=32.81 E-value=45 Score=41.28 Aligned_cols=49 Identities=4% Similarity=-0.241 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1009 L~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
|..++.-+..+.-.+|+...|+|||..++.++..... ....++|++.-.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E 280 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLE 280 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESS
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEecc
Confidence 4555533333444689999999999988888776653 113588888854
No 249
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=31.61 E-value=1.6e+02 Score=28.30 Aligned_cols=99 Identities=10% Similarity=-0.154 Sum_probs=58.8
Q ss_pred HHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCccEEEEeccccccccCCc-
Q 000169 1338 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQ- 1414 (1953)
Q Consensus 1338 ~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~--ds~ifVfLLSTrAGGeGLNLQ- 1414 (1953)
..+...+..|..+......++.+ ....+..+.+|-.++..+-..+++..+.. ...+.|++++...-..-...-
T Consensus 21 ~~~l~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~ 96 (133)
T 3nhm_A 21 RLLLSGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQ 96 (133)
T ss_dssp HHHHTTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTS
T ss_pred HHHHhCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhh
Confidence 33334677777777665555544 44577888888777655556666666653 235667777764322212211
Q ss_pred -cCCeEEEcCCCCCchhHHhhhhcccccC
Q 000169 1415 -SADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (1953)
Q Consensus 1415 -aADtVIifDppWNP~~d~QAiGRAhRIG 1442 (1953)
.|+.+ +--|+++.....++.++.+-.
T Consensus 97 ~g~~~~--l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 97 PVPDAY--LVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp CCCSEE--EESSCCHHHHHHHHHHHHHHH
T ss_pred cCCceE--EeccCCHHHHHHHHHHHHhhh
Confidence 13333 335889999999888876543
No 250
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=30.91 E-value=39 Score=41.35 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhcC----CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH
Q 000169 1003 DYQIVGLQWMLSLYNN----KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN 1064 (1953)
Q Consensus 1003 PYQleGL~WLlsL~~n----~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q 1064 (1953)
+..++.+..++..+.. +.+.||..+.|+|||..+-++...+ +...+++.|....+...
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l----~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL----GSKVPFCPMVGSEVYST 104 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH----CTTSCEEEEEGGGGCCS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh----CCCceEEEEeHHHHHHH
Confidence 3444444444443332 3467999999999999988777654 22246666665544433
No 251
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=30.68 E-value=63 Score=30.97 Aligned_cols=97 Identities=10% Similarity=-0.075 Sum_probs=55.5
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcC--CCCccEEEEeccccccccCCc--cCC
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQ--SAD 1417 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~--ds~ifVfLLSTrAGGeGLNLQ--aAD 1417 (1953)
..|..|..+......++.+ ....+..+.+|-.++..+-..+++.++.. ...+.|++++...-..-...- .|+
T Consensus 25 ~~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~ 100 (127)
T 3i42_A 25 MLGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFD 100 (127)
T ss_dssp HTTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCS
T ss_pred HcCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhH
Confidence 3466777776655555544 44567788888766655555666666653 455667777654432211111 134
Q ss_pred eEEEcCCCCCchhHHhhhhcccccCCc
Q 000169 1418 TVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1418 tVIifDppWNP~~d~QAiGRAhRIGQK 1444 (1953)
. ++--|+++....+++.++++-+..
T Consensus 101 ~--~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 101 F--YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHC-----
T ss_pred H--heeCCCCHHHHHHHHHHhhccCCC
Confidence 3 344688999999998888775543
No 252
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=30.62 E-value=2.1e+02 Score=30.96 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=51.5
Q ss_pred hcccHHHH-HHHHHHHHH------hcCCeeEEeechhHHHHHHHHHHHHc----CCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1325 KSCGKLWI-LDRILIKLQ------RTGHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLk------atGhKVLIFSQft~~LDILed~L~~r----GikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
..+||-.. +.-++..+. ..+.++||.+..+..+.-+.+.+... ++.+..++|+.+.......+ +
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-- 145 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N-- 145 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T--
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C--
Confidence 35788664 223333332 35678999999988877776666654 47888889987655443332 2
Q ss_pred CCCccEEEEeccccc------cccCCccCCeEEE
Q 000169 1394 DSDCFIFLLSIRAAG------RGLNLQSADTVII 1421 (1953)
Q Consensus 1394 ds~ifVfLLSTrAGG------eGLNLQaADtVIi 1421 (1953)
.+.|++.+....- ..+++...++||+
T Consensus 146 --~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 --NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp --TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2345555543321 1355556666665
No 253
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=30.28 E-value=1.1e+02 Score=41.81 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=63.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHH----HcCC----eEEeecCCCCHHHHHHHHHHhhcCCCC
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL----VYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~----~rGi----kylRLDGsTs~eeRqeaIerFNs~ds~ 1396 (1953)
..|||-..+.-++..+...+.++||.+..+..+.-+.+.|. ..++ .+..++|+++..++...++.+..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----
Confidence 45788866666666666778899999999887766665554 3466 78999999999888877777764
Q ss_pred ccEEEEeccccccccC-CccCCeEEE
Q 000169 1397 CFIFLLSIRAAGRGLN-LQSADTVII 1421 (1953)
Q Consensus 1397 ifVfLLSTrAGGeGLN-LQaADtVIi 1421 (1953)
+.|++.+....-.-+. |...++||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 3455555433332222 445566654
No 254
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=30.13 E-value=4.1 Score=42.58 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=49.9
Q ss_pred ccccccc-cCCCccccCChhhhhcCCCCccccCCCcccc--ccccccCCCcccccc----------CCCccccCCCCccc
Q 000169 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (1953)
Q Consensus 1730 ~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~ee--g~~a~~~d~~~~~~~----------~~s~~~~~~~~e~~ 1796 (1953)
+..+.+| .+|.. .+|+|+.++++|++++. +-..|+. |+|....+-..|+.. .+|+|| ..-
T Consensus 35 ~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~t-I~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 107 (135)
T 2yyn_A 35 HEMSLAFQDPVPL-TVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAG 107 (135)
T ss_dssp SGGGGGGSSCCCT-TSTTHHHHCSSCCCHHH-HHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CccchhhcCCCcc-cCCCHHHHcCCCCCHHH-HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3466778 54544 79999999999999876 7788987 588766665555544 678887 566
Q ss_pred cccchhhhc
Q 000169 1797 QVLQPKIKR 1805 (1953)
Q Consensus 1797 ~~~q~~~~~ 1805 (1953)
..|+-.|.+
T Consensus 108 ~~L~~~f~~ 116 (135)
T 2yyn_A 108 IKLENYFEE 116 (135)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655544
No 255
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=29.99 E-value=2.1e+02 Score=33.06 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=57.6
Q ss_pred hcccHHHHHH-HHHHHHHh--cCCeeEEeechhHHHHHHHHHHHHc-----CCeEEeecCCCCHHHHHHHHHHhhcCCCC
Q 000169 1325 KSCGKLWILD-RILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1325 ~~SGKLelLd-rIL~kLka--tGhKVLIFSQft~~LDILed~L~~r-----GikylRLDGsTs~eeRqeaIerFNs~ds~ 1396 (1953)
..+||-.... -++..+.. .+.++||.+.....+.-+.+.+... ++.+..++|+.+.......+..- .
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~-- 128 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---C-- 128 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHS---C--
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcC---C--
Confidence 3478865432 23322221 3558999999988887777666553 78899999999877665554432 2
Q ss_pred ccEEEEecccc-----ccccCCccCCeEEE
Q 000169 1397 CFIFLLSIRAA-----GRGLNLQSADTVII 1421 (1953)
Q Consensus 1397 ifVfLLSTrAG-----GeGLNLQaADtVIi 1421 (1953)
..|++.+.... ...+++...++||+
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 23555554433 23456777777776
No 256
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=29.94 E-value=1e+02 Score=36.02 Aligned_cols=53 Identities=21% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech
Q 000169 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~ 1059 (1953)
.+|++++. -+..+.-.+|+-+.|+|||..++.++...... .+..+++++|.-.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 45666663 23344456899999999998888777653211 0114577777743
No 257
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=29.80 E-value=1.3e+02 Score=32.57 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=43.1
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHc---CCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEecccc-----ccccCCc
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA-----GRGLNLQ 1414 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~r---GikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAG-----GeGLNLQ 1414 (1953)
.+.++||.+..+..+.-+.+.+... ++.+..+.|+.+...+... +.. ++.|++.+.... ...+++.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK---GVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS---CCSEEEECHHHHHHHHHTTCCCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHHHHHcCCcCcc
Confidence 5778999999999888888877763 7788888888765544332 222 234444443222 2245566
Q ss_pred cCCeEEE
Q 000169 1415 SADTVII 1421 (1953)
Q Consensus 1415 aADtVIi 1421 (1953)
..++||+
T Consensus 167 ~~~~lVi 173 (228)
T 3iuy_A 167 SITYLVI 173 (228)
T ss_dssp TCCEEEE
T ss_pred cceEEEE
Confidence 6776665
No 258
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=29.73 E-value=2e+02 Score=36.44 Aligned_cols=79 Identities=15% Similarity=0.086 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEe----chHHHHHHHHHHHHHCCCCe
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIV----PNAVLVNWKSELHKWLPSVS 1077 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k----g~~GP~LIVV----P~SLL~QW~~Ef~KwaPslk 1077 (1953)
+++|+-|+.+-...+-+|+++ -|+|||..++..|....... +..+-++|+| ..+.+..+.+++...----+
T Consensus 150 iraID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~ 228 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGD-RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKY 228 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGG
T ss_pred ceeeccccccccCCEEEEecC-CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCccc
Confidence 567777776555555566665 89999999887777665421 1122334443 46788888888876433234
Q ss_pred EEEEecch
Q 000169 1078 CIYYVGAK 1085 (1953)
Q Consensus 1078 Vvvy~Gs~ 1085 (1953)
++++..+.
T Consensus 229 tvvV~ata 236 (510)
T 2ck3_A 229 TIVVSATA 236 (510)
T ss_dssp EEEEEECT
T ss_pred ceEEEECC
Confidence 44444443
No 259
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.32 E-value=1.6e+02 Score=27.44 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=48.4
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccccccCCc--cCCeEE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ--SADTVI 1420 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGGeGLNLQ--aADtVI 1420 (1953)
.|..|..+......++.+ ....+..+.+|-.++...-..+++.++.......|++++...... ...- .|+.+|
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 466666555554444433 345677777776655433344555554323345666776543222 2211 233333
Q ss_pred EcCCCCCchhHHhhhhccc
Q 000169 1421 IYDPDPNPKNEEQAVARAH 1439 (1953)
Q Consensus 1421 ifDppWNP~~d~QAiGRAh 1439 (1953)
--|+++....+++.++.
T Consensus 99 --~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 --VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp --ECCSSTHHHHHHHHHHT
T ss_pred --ECCCCHHHHHHHHHHHh
Confidence 35778888888777654
No 260
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=29.27 E-value=51 Score=45.61 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---CCCCeEEEechHHHHH-HHHHHHHHCC
Q 000169 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---NYGPHLIIVPNAVLVN-WKSELHKWLP 1074 (1953)
Q Consensus 999 gkLRPYQleGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---~~GP~LIVVP~SLL~Q-W~~Ef~KwaP 1074 (1953)
.+|-+-|.++|.. .+.+.++...-|+|||.+.+.-|.+++.... ....+|||+++....+ -.+.+...++
T Consensus 9 ~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 9 STWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 4689999998752 2456688888999999998888888875322 3457899999864433 3333333211
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhccccEEEEeHHHHHhh----hhcccccCccEEEccccc
Q 000169 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQ 1132 (1953)
Q Consensus 1075 slkVvvy~Gs~deRk~l~~qei~~~~fdVVITTYEsL~kd----~s~L~kikWd~VIIDEAH 1132 (1953)
..- ...++.. .+.. ....-.++.|+|+..+... ......+...+-|+||..
T Consensus 83 ~~~----~~~~~~~-~~~~--~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 83 KEL----VQRPGSL-HIRR--QLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp HHH----HHSTTCH-HHHH--HHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred HHh----hcCcchH-HHHH--HHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 000 0000000 1110 1111235688998887644 222333455556888754
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=29.11 E-value=84 Score=37.63 Aligned_cols=50 Identities=16% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
.+|++++. -+..+.-.+|+-+.|+|||..++.++..+.. . .+++++|.-.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~-~--g~~vlyid~E 100 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-E--GKTCAFIDAE 100 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeCC
Confidence 45666653 2344555689999999999999888877653 2 3477888753
No 262
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=28.93 E-value=3.2e+02 Score=30.53 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=54.7
Q ss_pred hcccHHHH-HHHHHHHHHh------cCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcC
Q 000169 1325 KSCGKLWI-LDRILIKLQR------TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLka------tGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ 1393 (1953)
..+||-.+ +.-++..+.. .+.++||.+..+..+.-+.+.|.. .++.+..+.|+.........+ ..
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~- 175 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN- 175 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-
Confidence 34788654 4444444432 577899999998887766666654 467788899988765544333 22
Q ss_pred CCCccEEEEecc-c------cccccCCccCCeEEE
Q 000169 1394 DSDCFIFLLSIR-A------AGRGLNLQSADTVII 1421 (1953)
Q Consensus 1394 ds~ifVfLLSTr-A------GGeGLNLQaADtVIi 1421 (1953)
.+.| +++|. . ...++++...+.||+
T Consensus 176 --~~~I-iv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 --GINI-IVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --CCSE-EEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --CCCE-EEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 1334 45542 1 123466777777765
No 263
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=28.75 E-value=62 Score=32.07 Aligned_cols=48 Identities=6% Similarity=0.001 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcC-CeeEEeec-hhHHHHHHHHHHHHcCCeEEeecCCCC
Q 000169 1331 WILDRILIKLQRTG-HRVLLFST-MTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (1953)
Q Consensus 1331 elLdrIL~kLkatG-hKVLIFSQ-ft~~LDILed~L~~rGikylRLDGsTs 1379 (1953)
..+...+..+. .+ .+|||||. .-.........|...|+.+..|+|++.
T Consensus 76 ~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 76 KDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 33444444443 44 88999994 555566788889999999999999874
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.65 E-value=76 Score=36.89 Aligned_cols=35 Identities=29% Similarity=0.184 Sum_probs=22.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
..+|+-..|.|||-.+..+...+....+ ..+++|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 3456677999999888776665543222 2556554
No 265
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.48 E-value=1.1e+02 Score=28.18 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=50.5
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCC--CCccEEEEeccccccccCCccCCeE
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGRGLNLQSADTV 1419 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~d--s~ifVfLLSTrAGGeGLNLQaADtV 1419 (1953)
..|..|..+......++.+. ...+..+.+|-.++...-..+++..+... ..+.|++++...-.. ..-.+...
T Consensus 23 ~~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 45677777666555555543 34567777776554333344555554422 345566666543322 21111122
Q ss_pred EEcCCCCCchhHHhhhhcccc
Q 000169 1420 IIYDPDPNPKNEEQAVARAHR 1440 (1953)
Q Consensus 1420 IifDppWNP~~d~QAiGRAhR 1440 (1953)
-++.-|.++....+++.++.+
T Consensus 97 ~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 97 AILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EECSSCSTTHHHHHHHHTTCC
T ss_pred HhccCCCCHHHHHHHHHHHhc
Confidence 234557788888888777654
No 266
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=26.81 E-value=38 Score=39.07 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=18.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (1953)
+.+.+|..+.|+|||..+-++..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 66889999999999987766543
No 267
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=26.79 E-value=1.1e+02 Score=37.35 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=51.4
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCC
Q 000169 1325 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkat-----GhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds 1395 (1953)
..+||-....-.+...... +.++||.+.....+.-+.+.|.. .++.+..++|+++...+...+. .
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 104 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 104 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh--C----
Confidence 3578876544333333222 67899999988776655555544 4999999999987655433221 1
Q ss_pred CccEEEEecccccc----c-c-CCccCCeEEE
Q 000169 1396 DCFIFLLSIRAAGR----G-L-NLQSADTVII 1421 (1953)
Q Consensus 1396 ~ifVfLLSTrAGGe----G-L-NLQaADtVIi 1421 (1953)
.+.|++.+....-. | + ++...++||+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 13355555444331 1 3 5667788777
No 268
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=26.72 E-value=85 Score=33.97 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=27.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
+.-.+|+.+.|+|||..++.++....... ..+++++.-.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc
Confidence 33458999999999998888776544322 2467777643
No 269
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=25.60 E-value=85 Score=38.09 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=53.4
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeeEEeechhHHHHHHHHHHH----HcCCeEEeecCCCCHHHHHHHHHHhhcCCC
Q 000169 1325 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkat-----GhKVLIFSQft~~LDILed~L~----~rGikylRLDGsTs~eeRqeaIerFNs~ds 1395 (1953)
..+||.....-.+...... +.++||.+..+..+.-+.+.+. ..++.+..++|+++...+...+. .
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 101 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII--E---- 101 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh--c----
Confidence 3578876544333333222 7789999998776655444444 44999999999986554432221 1
Q ss_pred CccEEEEeccccccc-----c-CCccCCeEEE
Q 000169 1396 DCFIFLLSIRAAGRG-----L-NLQSADTVII 1421 (1953)
Q Consensus 1396 ~ifVfLLSTrAGGeG-----L-NLQaADtVIi 1421 (1953)
.+.|++.+....-.- + ++...++||+
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 233555554443221 3 5666777776
No 270
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.28 E-value=1.7e+02 Score=28.38 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=55.9
Q ss_pred hcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc--CCCCccEEEEecccccccc--CCccCC
Q 000169 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRGL--NLQSAD 1417 (1953)
Q Consensus 1342 atGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs--~ds~ifVfLLSTrAGGeGL--NLQaAD 1417 (1953)
..|..|..+......++.+ ....+..+.+|-.++...-..+++.++. ....+.|++++...-..-+ ..-.+.
T Consensus 28 ~~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g 103 (140)
T 3grc_A 28 KGGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLA 103 (140)
T ss_dssp HTTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTC
T ss_pred HCCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcC
Confidence 3566776666655555444 4456778888776665555566666664 3345667777754322111 222222
Q ss_pred eEEEcCCCCCchhHHhhhhccccc
Q 000169 1418 TVIIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1418 tVIifDppWNP~~d~QAiGRAhRI 1441 (1953)
..-++--|.++.....++.++.+-
T Consensus 104 ~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 104 VSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHh
Confidence 223344578888888888877654
No 271
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=24.96 E-value=1.3e+02 Score=34.75 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=22.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe
Q 000169 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057 (1953)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV 1057 (1953)
.+.-..|.|||-.+..+...+.. ..+.++++.
T Consensus 102 ~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~ 133 (295)
T 1ls1_A 102 FLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVA 133 (295)
T ss_dssp EEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCeEEEec
Confidence 45578999999888776655543 245677766
No 272
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=24.56 E-value=2.9e+02 Score=26.69 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=52.2
Q ss_pred cCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhc--CCCCccEEEEeccccccc-cCCccCCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRG-LNLQSADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs--~ds~ifVfLLSTrAGGeG-LNLQaADtV 1419 (1953)
.|..|..+......++.+ ....+..+.+|-.++...-..+++.++. ....+.|++++......- ...-.+...
T Consensus 30 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (142)
T 3cg4_A 30 AGFHIISADSGGQCIDLL----KKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVV 105 (142)
T ss_dssp TTCEEEEESSHHHHHHHH----HTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEE
T ss_pred CCeEEEEeCCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCcc
Confidence 466666665554444443 3455677777765544334455555554 344566777765432221 112222333
Q ss_pred EEcCCCCCchhHHhhhhccccc
Q 000169 1420 IIYDPDPNPKNEEQAVARAHRI 1441 (1953)
Q Consensus 1420 IifDppWNP~~d~QAiGRAhRI 1441 (1953)
-++.-|.++....+++.++.+.
T Consensus 106 ~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 106 DYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 3444577888888888777654
No 273
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=24.25 E-value=2e+02 Score=30.75 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHhCCCCCeEEEechHHHHHHH-HHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhccccEEEEeH
Q 000169 1042 YLMEFKGNYGPHLIIVPNAVLVNWK-SELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTY 1108 (1953)
Q Consensus 1042 ~Lle~kg~~GP~LIVVP~SLL~QW~-~Ef~KwaPslkVvvy~Gs~--deRk~l~~qei~~~~fdVVITTY 1108 (1953)
.++......+++||.|+..-...+. ..+.. .++.+..++|.. ..|...+ ..+..+...|+|+|-
T Consensus 38 ~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~r~~~~-~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 38 DLLNATGKDSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGDRSQRDREEAL-HQFRSGKSPILVATA 104 (185)
T ss_dssp HHHHHC-CCSCEEEEESCHHHHHHHHHHHHH--TTCCEEEEC--------CHHH-HHHHHTSSSEEEEEC
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHH--cCCceEEEeCCCCHHHHHHHH-HHHHcCCCeEEEEcC
Confidence 3333333567899999976444443 33443 357788888853 3444443 345677889999993
No 274
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=24.24 E-value=1.5e+02 Score=28.38 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=56.3
Q ss_pred CCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEeccccc-----cc-cCCccCC
Q 000169 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG-----RG-LNLQSAD 1417 (1953)
Q Consensus 1344 GhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLSTrAGG-----eG-LNLQaAD 1417 (1953)
+..|..+......+..+ ... +..+.+|-.++...-..+++.++.......|++++..... .- ...-.+.
T Consensus 27 ~~~v~~~~~~~~~~~~~----~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTLS----LNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTSC----CCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHhh----ccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 44555555544333322 233 6777888777766667777777765556677777754431 11 1112233
Q ss_pred eEEEcCCCCCchhHHhhhhcccccCCc
Q 000169 1418 TVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (1953)
Q Consensus 1418 tVIifDppWNP~~d~QAiGRAhRIGQK 1444 (1953)
..-++.-|+++....+++.++..-+..
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 334455688999999999888765543
No 275
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=24.12 E-value=2.6e+02 Score=34.56 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCeEEEEecch--hhHhHHHHHHHhhccccEEE
Q 000169 1030 LGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLV 1105 (1953)
Q Consensus 1030 LGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slkVvvy~Gs~--deRk~l~~qei~~~~fdVVI 1105 (1953)
..+....+..+...+......+++||.|+.. .+..+...+.+.++ ++.+..++|.. ..|..+. ..+..+..+|+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~-~~f~~g~~~vLv 397 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV-KRFKKDESGILV 397 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH-HHHHHCSSEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH-HHHhcCCCCEEE
Confidence 3444445555555444445667899999976 45555666666655 78888999863 4444443 346678889999
Q ss_pred EeH
Q 000169 1106 TTY 1108 (1953)
Q Consensus 1106 TTY 1108 (1953)
+|-
T Consensus 398 aT~ 400 (563)
T 3i5x_A 398 CTD 400 (563)
T ss_dssp ECG
T ss_pred Ecc
Confidence 995
No 276
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=24.12 E-value=1.6e+02 Score=37.42 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
..+||-.+ -+++-+. .+.++||.+.....+.-..+.|...|+.+..++|+++..++..++..+......+.|++++.
T Consensus 68 TGsGKTl~--~~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 68 TGGGKSLC--YQLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp TTSCTTHH--HHHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCChHHHH--HHHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 34677543 2333333 35689999999999988888898889999999999999999888888854455666777766
Q ss_pred cc
Q 000169 1405 RA 1406 (1953)
Q Consensus 1405 rA 1406 (1953)
..
T Consensus 145 e~ 146 (591)
T 2v1x_A 145 EK 146 (591)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 277
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=24.10 E-value=2.5e+02 Score=35.17 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCeEEEEecch--hhHhHHHHHHHhhccccEEEEe
Q 000169 1032 KTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTT 1107 (1953)
Q Consensus 1032 KTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~KwaP-slkVvvy~Gs~--deRk~l~~qei~~~~fdVVITT 1107 (1953)
+....+..+...+......+++||.|+.. .+..+...+.+.++ ++.+..++|.. ..|..+. ..+..+..+|+|+|
T Consensus 270 ~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~-~~F~~g~~~vLVaT 348 (579)
T 3sqw_A 270 SIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV-KRFKKDESGILVCT 348 (579)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH-HHHHHCSSEEEEEC
T ss_pred hHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH-HHhhcCCCeEEEEc
Confidence 33344444444444345567899999976 45556666776655 78888999863 3444443 34667888999998
Q ss_pred H
Q 000169 1108 Y 1108 (1953)
Q Consensus 1108 Y 1108 (1953)
-
T Consensus 349 ~ 349 (579)
T 3sqw_A 349 D 349 (579)
T ss_dssp G
T ss_pred c
Confidence 5
No 278
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=24.00 E-value=58 Score=43.10 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=16.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALI 1040 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALI 1040 (1953)
+.+.+|.-+.|+|||..+-++.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4457899999999997665543
No 279
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.60 E-value=1.4e+02 Score=39.11 Aligned_cols=91 Identities=13% Similarity=0.162 Sum_probs=50.8
Q ss_pred hcccHHHHHHHHHHHHHhc-----CCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHHHHHHHHhhcCCC
Q 000169 1325 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkat-----GhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeRqeaIerFNs~ds 1395 (1953)
..+||..+..-.+...... +.++||.+.....+.-+.+.|.. .++.+..++|+.+...+...+. .
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~---- 345 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 345 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh--C----
Confidence 3578876544444333322 77899999988776665555443 4999999999987655433221 1
Q ss_pred CccEEEEecccccc-----cc-CCccCCeEEE
Q 000169 1396 DCFIFLLSIRAAGR-----GL-NLQSADTVII 1421 (1953)
Q Consensus 1396 ~ifVfLLSTrAGGe-----GL-NLQaADtVIi 1421 (1953)
.+.|++.+....-. .+ .+...++||+
T Consensus 346 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 23355555443321 12 4556677776
No 280
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=23.39 E-value=3e+02 Score=34.89 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCeEEEE
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV----P~SLL~QW~~Ef~KwaPslkVvvy 1081 (1953)
+++++.|+.+-...+-+|+++ -|+|||..++..|.. ....+-++|+| ..+.+..+.+++...----+++++
T Consensus 150 ikaID~l~PigrGQR~~Ifg~-~g~GKT~l~l~~I~n----~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV 224 (513)
T 3oaa_A 150 YKAVDSMIPIGRGQRELIIGD-RQTGKTALAIDAIIN----QRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVV 224 (513)
T ss_dssp CHHHHHHSCCBTTCBCEEEES-SSSSHHHHHHHHHHT----TSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEE
T ss_pred eeeeccccccccCCEEEeecC-CCCCcchHHHHHHHh----hccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEE
Confidence 567777776655555667776 899999887666543 12233333443 467888888888775433344444
Q ss_pred ecch
Q 000169 1082 VGAK 1085 (1953)
Q Consensus 1082 ~Gs~ 1085 (1953)
..+.
T Consensus 225 ~ata 228 (513)
T 3oaa_A 225 VATA 228 (513)
T ss_dssp EECT
T ss_pred EECC
Confidence 4443
No 281
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.37 E-value=1.2e+02 Score=38.10 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=17.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
+...+|.-+.|+|||..+-++...
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 445689999999999777555443
No 282
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=23.30 E-value=2.5e+02 Score=29.49 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=54.3
Q ss_pred hcccHHHH-HHHHHHHHH-----hcCCeeEEeechhHHHHHHHHHHHHc--CCeEEeecCCCCHHHHHHHHHHhhcCCCC
Q 000169 1325 KSCGKLWI-LDRILIKLQ-----RTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLk-----atGhKVLIFSQft~~LDILed~L~~r--GikylRLDGsTs~eeRqeaIerFNs~ds~ 1396 (1953)
..+||... +.-++..+. ..+.++||.+..+..+.-+.+.+... ++.+..++|+.........+.. .
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 120 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR------G 120 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH------C
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC------C
Confidence 35788765 444444432 24678999999988888777777765 4678888888775544333321 2
Q ss_pred ccEEEEecccc-----ccccCCccCCeEEE
Q 000169 1397 CFIFLLSIRAA-----GRGLNLQSADTVII 1421 (1953)
Q Consensus 1397 ifVfLLSTrAG-----GeGLNLQaADtVIi 1421 (1953)
+.|++.+.... ...+++...++||+
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 23444443221 12345666666665
No 283
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.26 E-value=2.4e+02 Score=27.34 Aligned_cols=90 Identities=7% Similarity=-0.101 Sum_probs=53.4
Q ss_pred cCCeeEEeechhHHHHHHHHHHHH-cCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe-ccccccccCCcc-CCeE
Q 000169 1343 TGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS-IRAAGRGLNLQS-ADTV 1419 (1953)
Q Consensus 1343 tGhKVLIFSQft~~LDILed~L~~-rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS-TrAGGeGLNLQa-ADtV 1419 (1953)
.|..|..+......+..+ .. ..+..+.+|-.++...-..++..++.....+.|++++ .... ... ... |+.
T Consensus 38 ~g~~v~~~~~~~~al~~l----~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~-~~~-~~~~~~~- 110 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQHR----SQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHE-LIE-SSEHNLS- 110 (138)
T ss_dssp TTCEEEEESSHHHHHHTG----GGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSSCEE-
T ss_pred cCCEEEEeCCHHHHHHHH----HhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCC-HHH-HHHHHHh-
Confidence 466776666555544443 33 4677777777665544456777776544566777777 3322 222 222 333
Q ss_pred EEcCCCCCchhHHhhhhcccc
Q 000169 1420 IIYDPDPNPKNEEQAVARAHR 1440 (1953)
Q Consensus 1420 IifDppWNP~~d~QAiGRAhR 1440 (1953)
++--|+++.....++.++.+
T Consensus 111 -~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 -YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp -EEESSCCHHHHHHHHHHTCC
T ss_pred -eeeCCCCHHHHHHHHHHHHH
Confidence 33457889988888888765
No 284
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=22.45 E-value=1.1e+02 Score=33.97 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=17.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIA 1041 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa 1041 (1953)
..+.+|.-++|+|||..+-++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34568999999999987766554
No 285
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.43 E-value=1e+02 Score=32.47 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHHH------hcCCeeEEeechhHHHHH-HHHHHHH---cCCeEEeecCCCCH
Q 000169 1326 SCGKLWILDRILIKLQ------RTGHRVLLFSTMTKLLDI-LEEYLQW---RQLVYRRIDGTTSL 1380 (1953)
Q Consensus 1326 ~SGKLelLdrIL~kLk------atGhKVLIFSQft~~LDI-Led~L~~---rGikylRLDGsTs~ 1380 (1953)
.+||-.+...++..+. ..+.++||++.....++- +.+.+.. .++.+..++|+...
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---C
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCccc
Confidence 3566555444333322 126789999998877665 5444443 26788888887653
No 286
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=22.31 E-value=1.4e+02 Score=35.98 Aligned_cols=53 Identities=17% Similarity=0.062 Sum_probs=33.8
Q ss_pred HHHHHHHH--hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000169 1007 VGLQWMLS--LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (1953)
Q Consensus 1007 eGL~WLls--L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (1953)
..|+.++. -+..+.-.+|.-+.|+|||..++.++..+.. ..+++++|......
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeccccc
Confidence 34666553 2223333467889999999888877766543 33578888765433
No 287
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=22.31 E-value=1.9e+02 Score=36.50 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCeEEEE
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV----P~SLL~QW~~Ef~KwaPslkVvvy 1081 (1953)
+++|+-|..+-...+-+|+++ -|+|||..++..|.... ..+-++|+| ..+.+..+.+++...----+++++
T Consensus 150 iraID~l~PigrGQR~~Ifg~-~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV 224 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGD-RQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVV 224 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEEC-SSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEE
T ss_pred eeecccccccccCCEEEEECC-CCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEE
Confidence 566666665555555566665 89999988876665432 233333444 356888888888874433344444
Q ss_pred ecchh
Q 000169 1082 VGAKD 1086 (1953)
Q Consensus 1082 ~Gs~d 1086 (1953)
..+.+
T Consensus 225 ~atad 229 (502)
T 2qe7_A 225 TASAS 229 (502)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 44433
No 288
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.21 E-value=7.7 Score=40.45 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=35.6
Q ss_pred cccccCCCccccCChhhhhcCCCCccccCCCccccccccccCCCcccccc
Q 000169 1733 TQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1733 ~~~~~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~~~d~~~~~~~ 1782 (1953)
+.||.-| +|+|+.++++|++++. +-..|+.|+|....+-..|+..
T Consensus 30 ~~~F~~P----~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~L 74 (131)
T 2dkw_A 30 FNIFSKP----VSDYLEVIKEPMDLST-VITKIDKHNYLTAKDFLKDIDL 74 (131)
T ss_dssp GCTTSSC----CSSCTTSCSSCCCHHH-HHHHHHTTCCCSSHHHHHHHHH
T ss_pred chhhcCc----CccHHhHcCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 4677333 9999999999999876 7789999999876666666554
No 289
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=21.74 E-value=5.9 Score=47.75 Aligned_cols=69 Identities=10% Similarity=-0.021 Sum_probs=46.5
Q ss_pred CCccccccc-cCCCccccCChhhhhcCCCCccccCCCccccccccc-cCCCcccccc----------CCCccccCCCCcc
Q 000169 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAV-SGDSHMDHQQ----------SGSWTHDRDEGED 1795 (1953)
Q Consensus 1728 ~~~~~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~eeg~~a~-~~d~~~~~~~----------~~s~~~~~~~~e~ 1795 (1953)
.++.++.+| .+|+...+|+|+.++++|++++. +-..| ++|.. ..+-..|+.. .||+|| .+
T Consensus 93 ~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~t-I~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~ 164 (361)
T 2r10_A 93 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIV-----KN 164 (361)
T ss_dssp HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCSSSHHH-----HH
T ss_pred cCCcccHHhcCCCCcccCCChHhhcCCCcCHHH-HHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCCCCHHH-----HH
Confidence 345678999 99999999999999999999655 44445 44432 1222334333 789888 66
Q ss_pred ccccchhhh
Q 000169 1796 EQVLQPKIK 1804 (1953)
Q Consensus 1796 ~~~~q~~~~ 1804 (1953)
-..|+-.+.
T Consensus 165 a~~l~~~~~ 173 (361)
T 2r10_A 165 SMQVVMLIE 173 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666654443
No 290
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.35 E-value=1.7e+02 Score=31.03 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=43.5
Q ss_pred cCCeeEEee----chhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1343 TGHRVLLFS----TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1343 tGhKVLIFS----Qft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
...|||++| .+.--+.++..+|+..||.+..+...++.++-.+.+.+++ .+ ++.+|.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~---~d--iV~lS~ 77 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED---VD--VIGVSI 77 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT---CS--EEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC---CC--EEEEEe
Confidence 456889987 4455688999999999999999988999988777666664 23 555663
No 291
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=21.02 E-value=2.5e+02 Score=35.56 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEe----chHHHHHHHHHHHHHCCCCeEEEE
Q 000169 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV----PNAVLVNWKSELHKWLPSVSCIYY 1081 (1953)
Q Consensus 1006 leGL~WLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVV----P~SLL~QW~~Ef~KwaPslkVvvy 1081 (1953)
+++|+-|+.+-...+.+|+++ -|+|||..++..|.... ..+-++|+| ..+.+..+.+++...----+++++
T Consensus 163 iraID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV 237 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGD-RQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVV 237 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEE-TTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred ccccccccccccCCEEEEEcC-CCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEE
Confidence 567777776555555566665 89999988776665432 233233443 356788888888763322344444
Q ss_pred ecch
Q 000169 1082 VGAK 1085 (1953)
Q Consensus 1082 ~Gs~ 1085 (1953)
..+.
T Consensus 238 ~ata 241 (515)
T 2r9v_A 238 VASA 241 (515)
T ss_dssp EECT
T ss_pred EECC
Confidence 4443
No 292
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=21.01 E-value=2.5e+02 Score=27.51 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=40.2
Q ss_pred cCCeeEEeec------hhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEe
Q 000169 1343 TGHRVLLFST------MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (1953)
Q Consensus 1343 tGhKVLIFSQ------ft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLS 1403 (1953)
..++|+||+. +-........+|...|+.|..++=....+.+..+.+... ...+.++++.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~ 80 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIG 80 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEET
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEEC
Confidence 4678999987 577889999999999999887765555555555544432 2334444443
No 293
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=20.93 E-value=4.3 Score=44.22 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=36.7
Q ss_pred ccccc-cCCCccccCChhhhhcCCCCccccCCCcccc--ccccccCCCcccccc
Q 000169 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ 1782 (1953)
Q Consensus 1732 ~~~~~-~~~s~~k~~~~~~~~~~~~~~~~~~~~~~ee--g~~a~~~d~~~~~~~ 1782 (1953)
.+.+| .+|. ..+|+|+.++++|++++. +-.+|+. |+|.-..+-..|+..
T Consensus 98 ~s~~F~~Pv~-~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~Y~s~~ef~~Dv~l 149 (184)
T 3o36_A 98 MSLAFQDPVP-LTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRL 149 (184)
T ss_dssp TCHHHHSCCC-TTSTTHHHHCSSCCCHHH-HHHHHHSTTCSCCSHHHHHHHHHH
T ss_pred hhhhhccccc-cCCCchhhhcCCCCCHHH-HHHHHHhcCCCCCCHHHHHHHHHH
Confidence 45667 4444 459999999999999876 7788888 788876666666543
No 294
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=20.86 E-value=1.1e+02 Score=36.05 Aligned_cols=35 Identities=29% Similarity=0.263 Sum_probs=24.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (1953)
..+.+|.-++|+|||..+-++...+ ..|++.+-..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~ 85 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADAT 85 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechH
Confidence 4567999999999998886665443 2466655544
No 295
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.79 E-value=1.7e+02 Score=34.48 Aligned_cols=53 Identities=15% Similarity=-0.055 Sum_probs=32.3
Q ss_pred HHHHHHHH-hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech
Q 000169 1007 VGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN 1059 (1953)
Q Consensus 1007 eGL~WLls-L~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~ 1059 (1953)
.+|..++. -+..+.-.+|+-+.|+|||..++.++...... .+..+++++|.-.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 45666663 23333345799999999998887776542210 0134577777753
No 296
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=20.78 E-value=1.4e+02 Score=31.88 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=35.3
Q ss_pred hcccHHHH-HHHHHHHHH--hcCCeeEEeechhHHHHHHHHHHHH----cCCeEEeecCCCCHHHH
Q 000169 1325 KSCGKLWI-LDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDR 1383 (1953)
Q Consensus 1325 ~~SGKLel-LdrIL~kLk--atGhKVLIFSQft~~LDILed~L~~----rGikylRLDGsTs~eeR 1383 (1953)
..+||-.. +.-++..+. ..+.++||.+.....+.-+.+.+.. .++.+..++|+.+..+.
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH
Confidence 35788765 444454442 2356899999998887766665553 37788889998765443
No 297
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=20.61 E-value=4.3e+02 Score=25.55 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=49.6
Q ss_pred CeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCC--CCccEEEEecccccc----ccCCccCCe
Q 000169 1345 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGR----GLNLQSADT 1418 (1953)
Q Consensus 1345 hKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~d--s~ifVfLLSTrAGGe----GLNLQaADt 1418 (1953)
..|..+......++.+. ...+..+.+|-.++..+-..++..++... ..+.|++++...-.. .+.. .|+.
T Consensus 27 ~~v~~~~~~~~a~~~~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~ 101 (140)
T 3n53_A 27 YLVIESKNEKEALEQID----HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHS-GADD 101 (140)
T ss_dssp SEEEEESSHHHHHHHHH----HHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTC-CCSE
T ss_pred ceEEEeCCHHHHHHHHh----cCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhc-CCCe
Confidence 56666666555555543 34678888887777666666777776533 456677777553222 1222 1333
Q ss_pred EEEcCCCCCchhHHhhhhcccc
Q 000169 1419 VIIYDPDPNPKNEEQAVARAHR 1440 (1953)
Q Consensus 1419 VIifDppWNP~~d~QAiGRAhR 1440 (1953)
+| --|+++.....++.++.+
T Consensus 102 ~l--~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 102 YL--TKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EE--ESSCCHHHHHHHHHHHHH
T ss_pred ee--eCCCCHHHHHHHHHHHHh
Confidence 33 347888888888887765
No 298
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=20.51 E-value=1.3e+02 Score=34.24 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=18.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000169 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (1953)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (1953)
..+.+|.-+.|+|||..+-++...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 356799999999999887666543
No 299
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=20.19 E-value=2.6e+02 Score=34.87 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=58.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeeEEeechhHHHHHHHHHHHHcCCeEEeecCCCCHHHHHHHHHHhhcCCCCccEEEEec
Q 000169 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (1953)
Q Consensus 1325 ~~SGKLelLdrIL~kLkatGhKVLIFSQft~~LDILed~L~~rGikylRLDGsTs~eeRqeaIerFNs~ds~ifVfLLST 1404 (1953)
..+||-.+ -+++-+. .+.++||.+.....+.-..+.|...|+.+..++|+.+..++..++..+..+. +.|++++.
T Consensus 49 TGsGKTl~--~~lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tp 123 (523)
T 1oyw_A 49 TGGGKSLC--YQIPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAP 123 (523)
T ss_dssp CHHHHHHH--HHHHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECH
T ss_pred CCcHHHHH--HHHHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECH
Confidence 34677642 2344333 3468999999999999888999999999999999999999888888887644 44666665
Q ss_pred ccc
Q 000169 1405 RAA 1407 (1953)
Q Consensus 1405 rAG 1407 (1953)
...
T Consensus 124 e~l 126 (523)
T 1oyw_A 124 ERL 126 (523)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
Done!