BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000170
(1950 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 322
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.5 bits (88), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>pdb|2HIY|A Chain A, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
pdb|2HIY|B Chain B, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
pdb|2HIY|C Chain C, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
pdb|2HIY|D Chain D, The Structure Of Conserved Bacterial Protein Sp0830 From
Streptococcus Pneumoniae. (Casp Target)
Length = 183
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 922 NPQSRSSTVHAEIKEQFTRVGGVAVEFCVHINRTDILFDDIFSKFEAVQHRDTFLELLEP 981
N ++ V AE++++ T +G VE +IN +I F I SK + V+ +TF + P
Sbjct: 15 NVGGKNKVVXAELRQELTNLGLEKVE--SYINSGNIFFTSIDSKAQLVEKLETFFAVHYP 72
Query: 982 YILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGA 1041
+I L SL E +A +E+ + W + + + LD +QV+ L
Sbjct: 73 FIQSFSLLSL--EDFEAELENLPA-WWSRDLARKDFLFYTEGLDVDQVIATVESLELKDE 129
Query: 1042 LVYLFNKGL 1050
++Y G+
Sbjct: 130 VLYFGKLGI 138
>pdb|3RBB|A Chain A, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3 Domain
pdb|3RBB|C Chain C, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3 Domain
pdb|3REA|A Chain A, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain
pdb|3REA|C Chain C, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain
pdb|3REB|A Chain A, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain
pdb|3REB|C Chain C, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain
Length = 166
Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 1610 FKLLDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSHRGSHILRK 1669
FKL+ P+ VE A+E EN+S + S EDAE ++ WR H+ R+
Sbjct: 103 FKLV-----PVEPEKVEEANEGENNSLLHPMSLHGMEDAEKEVLVWRFDSKLAFHHMARE 157
Query: 1670 LFSQFIKE 1677
L ++ K+
Sbjct: 158 LHPEYYKD 165
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 35.0 bits (79), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQ 553
P+ ++ F+ LL+ DG++ ++DVQ A+ A ++G H S V++ F D+
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTH 262
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 34.3 bits (77), Expect = 0.64, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 34.3 bits (77), Expect = 0.65, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 34.3 bits (77), Expect = 0.65, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 152 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 34.3 bits (77), Expect = 0.67, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 34.3 bits (77), Expect = 0.68, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 34.3 bits (77), Expect = 0.69, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.71, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 34.3 bits (77), Expect = 0.72, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 468 VVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR 527
V+PG A + K L+G P++ + FN LLL+ DG + +W
Sbjct: 221 VIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278
Query: 528 ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLL 580
++ G H+ +V ++G D K ++ G V+L SL LL
Sbjct: 279 GNSQNCFYG-HSQSIVSASWVGDD-------KVISCSMDGSVRLWSLKQNTLL 323
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 34.3 bits (77), Expect = 0.79, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 34.3 bits (77), Expect = 0.80, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+++ DG +WD K + + PV F
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 504 FNQPGDLLLAGYADGHVTVWDVQRASAAKVITG 536
F+ G LL AGY D + VWDV + S ++ G
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 324
>pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZJ|B Chain B, Crystal Structure For The Mutant D81c Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 32.0 bits (71), Expect = 3.1, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 1385 FLVIDQFNDEASHILSELRSHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWV 1444
+ VID F D + + E+ K LF Y + ++ L Y +K D L ++N +
Sbjct: 204 YQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEYVRSVYLEYKQKYDEL-ISN---I 259
Query: 1445 KYQSKGLGAYIERISDLPKFLSS 1467
+QSK Y+ I LP+FL++
Sbjct: 260 PFQSK----YLSEIRSLPEFLAN 278
>pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
pdb|2AZK|B Chain B, Crystal Structure For The Mutant W136e Of Sulfolobus
Solfataricus Hexaprenyl Pyrophosphate Synthase
Length = 289
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 1385 FLVIDQFNDEASHILSELRSHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWV 1444
+ VID F D + + E+ K LF Y + ++ L Y +K D L ++N +
Sbjct: 204 YQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEYVRSVYLEYKQKYDEL-ISN---I 259
Query: 1445 KYQSKGLGAYIERISDLPKFLSS 1467
+QSK Y+ I LP+FL++
Sbjct: 260 PFQSK----YLSEIRSLPEFLAN 278
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDV 525
VT++ F+ G LL AGY++G VWD
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDT 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,966,056
Number of Sequences: 62578
Number of extensions: 1955555
Number of successful extensions: 4503
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4411
Number of HSP's gapped (non-prelim): 96
length of query: 1950
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1837
effective length of database: 7,902,023
effective search space: 14516016251
effective search space used: 14516016251
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)