BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000170
(1950 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0P5W1|VPS8_MOUSE Vacuolar protein sorting-associated protein 8 homolog OS=Mus musculus
GN=Vps8 PE=2 SV=1
Length = 1427
Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 325/1387 (23%), Positives = 577/1387 (41%), Gaps = 270/1387 (19%)
Query: 431 ITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL 490
I+ I S A + D G P +AV S IAVG S G ++ D +
Sbjct: 141 ISAQIVSAADKVDAGLPTAIAV-SSLIAVGTSHGLALI------------FDQNQALRLC 187
Query: 491 LGDRSPA----PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHT--SPVVH 544
LG S ++A+ N LL G+A G +T+WD+ + IT H + ++H
Sbjct: 188 LGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILH 247
Query: 545 TLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604
F + A+ D+ G V L+ ++ + +++CL G K
Sbjct: 248 IKFTDDPT------LAICNDSGGSV--FELTFKRVMGVRTCESRCLFSGSK--------- 290
Query: 605 LLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTYQ 664
E C PL S+ + S++ +
Sbjct: 291 ---GEVCCIEPLHSKPELKDHPITQFSLLA-------------------------MASLT 322
Query: 665 TALVVRLTPTLEVYAQIP--RPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLL 722
LV+ L P+L+V+ P R D ++P AW +S + + V L
Sbjct: 323 KILVIGLKPSLKVWMTFPYGRMD---PSSVPLLAWH-FVAVNNSVNPMLAFCRGDMVHFL 378
Query: 723 AIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYLYARDGTVI 782
+ D + + L +Y + L I W++ + +V+L + +L++ R
Sbjct: 379 LVKRDESGAIHVTKQKHLHLY--YDL----INFTWINSRTVVLLDSVEKLHVIDRQTQEE 432
Query: 783 HQTSFAVDGSQGYDLVGYRSYFTNVFGN--------PEKSYHNCVSVRGASIYVLGPMHL 834
+T + Y+ ++S T GN EK+ + +S G I+ LG +
Sbjct: 433 LETMEISEVQLVYNSSHFKSLATG--GNVSQALALVGEKACYQSISSYGGQIFYLGTKSV 490
Query: 835 VVSRLLPWKERIQVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRTLDAVQEAIMPYLVEL 894
V L W+ER+ L K AL +A + ++G+A V+ L + + + +VE+
Sbjct: 491 YVMMLRSWRERMDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAVVADRMVEI 550
Query: 895 LLSYVDEVFSYISVAFCNQIEKLAQLNNPQSRSSTVHAEIKEQFTRVGGVAVEFCVHINR 954
L Y D P V +++ F V V++C+ + R
Sbjct: 551 LFHYADRALK----------------KCPDQGKIQV---MEQHFQDTVPVIVDYCLLLQR 591
Query: 955 TDILFDDIFSKF-EAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVE 1013
D+LF ++ K E + FLE LEPYIL D L + P++M+ L+ H+ K L+ VE
Sbjct: 592 KDLLFGQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLLENVE 651
Query: 1014 QCVLHMDISSLDFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLVVLR------NS 1067
++HMDI+SLD QVV +C E+ L+ A+VY++N+G+++F +P+E+L V+ +
Sbjct: 652 ALIVHMDITSLDIQQVVLMCWENRLYDAMVYVYNRGMNEFISPMEKLFKVIAPPLNAGKT 711
Query: 1068 ERESAYALGYRMLVYLKYCFKGLAFPPGHGTLPSTRLPSLRAELVQFLLEESDAQNSQAA 1127
+ +G ++LVY+ C G A+P G +P +P ++ ++ +FL+ + S
Sbjct: 712 LTDEQVVMGNKLLVYISCCLAGRAYP--LGDIPEDLVPLVKNQVFEFLIRLHSVEASSE- 768
Query: 1128 SSLLLKGSYLNLYHLLELDTEATLDVLRCAFIEVETPKSDFYACDMADTNAEPNNGNKMV 1187
+ Y + LL DT L+VL F DF +K
Sbjct: 769 -----EEVYPYVRTLLHFDTREFLNVLALTF-------EDF-------------KNDKQA 803
Query: 1188 AEYQNMLVQNTVNALVHILDEDISSTDGSASKDDSGSVEAWPSTKDIGHIFEFIACYVAS 1247
EYQ Q V+ L+ ++ + ++D + S+ +G +F F+A +A
Sbjct: 804 VEYQ----QRIVDILLKVM---VENSDFTPSQ--------------VGCLFTFLARQLAK 842
Query: 1248 GRAT--VSKSVLSQILQYLTSEKNVPQSILSHIETSKRREKQLLALLEAVPETDWNASEV 1305
T V++++ Q+L++L S P H E R++ LL LL+A + S +
Sbjct: 843 PDNTLFVNRTLFDQVLEFLCS----PDDDSRHSE----RQQVLLELLQAGGIVQFEESRL 894
Query: 1306 LHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDEPICAFSFIHDTL--LQLTDNEYTA 1363
+ + E A FYQ+C ++ + Y +D Y+ D F++IH+ L + E +
Sbjct: 895 IRMAEKAEFYQICEFMYEREHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQS 954
Query: 1364 FHSAVISRIPELICLSREATFFLVIDQFNDEASHILSELRSHPKSLFLYLKTVVEVHLHG 1423
++ + EL+ L LV F+++ ++ +L++ LF +L+++++
Sbjct: 955 VWQKAMNHMEELVSLKPCKAAELVATHFSEQIEVVIGQLQNQ-LLLFKFLRSLLD----- 1008
Query: 1424 TLNLSYLRKDDTLDVANCKWVKYQSKGLGAYIERISDLPKFLSSNAVHVTDDMIELYLEL 1483
+G+ E + P H+T E ++EL
Sbjct: 1009 -----------------------PREGVHVNQELLQIPP--------HIT----EQFIEL 1033
Query: 1484 LCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELND 1543
LC++ D V++ L+ + YR+E +++ Q+Y + + A+LLE+ GD A LL L L
Sbjct: 1034 LCQFSPDQVIQTLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDAHGAFLLLLERLQS 1093
Query: 1544 KFAALETAVGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLNPE 1603
+ + + + G V + + I LCQRN+ LN +
Sbjct: 1094 RLQEMTRQDENTKEDILLKG------------------VEDTMVETIALCQRNSQNLNQQ 1135
Query: 1604 ESEVLWFKLLDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSHRG 1663
+ E LWF LL++ P ++S S
Sbjct: 1136 QREALWFPLLEAMMTP-----------------------------------QKLSSSAAA 1160
Query: 1664 SHILRKLFSQFIKEIVEGMIGYVHLPTIMSKLLSD--NGSQEFGDFKLTILGMLGTYSFE 1721
H + +++ M ++ LP+I+ ++L D G + G+ + ILGML T+++E
Sbjct: 1161 PHPHCEALKSLTMQVLNSMAAFIALPSILQRILQDPIYGKGKLGEIQGLILGMLDTFNYE 1220
Query: 1722 RRILDTAKSLIEDDTFYTMSVLKKEASHGYAPRSLLCCIC-NCLLTKNSSSFQIRVFNCG 1780
+ +L+T SL+ D +++ L+ S G P+ C IC + + +I VF+CG
Sbjct: 1221 QTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSICLQQYKRRQEMADEIIVFSCG 1280
Query: 1781 HATHIQC 1787
H H C
Sbjct: 1281 HLYHSFC 1287
>sp|Q8N3P4|VPS8_HUMAN Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens
GN=VPS8 PE=1 SV=3
Length = 1428
Score = 327 bits (839), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 331/1389 (23%), Positives = 591/1389 (42%), Gaps = 273/1389 (19%)
Query: 431 ITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL 490
I+ I S A + D G P +AV S IAVG S G + ++ GK D + + LG
Sbjct: 141 ISAQIVSAADKVDAGLPTAIAV-SSLIAVGTSHG-LALIFGK------DQNQALRLCLGS 192
Query: 491 --LGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHT--SPVVHTL 546
+G + A ++A+ N LL G+A G +T+WD+ + IT H + ++H
Sbjct: 193 TSVGGQYGA-ISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIK 251
Query: 547 FLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606
F + A+ D+ G V L+ ++ + +++CL G K
Sbjct: 252 FTDDPT------LAICNDSGGSV--FELTFKRVMGVRTCESRCLFSGSK----------- 292
Query: 607 FDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTYQTA 666
E C PL S+ + S++ +
Sbjct: 293 -GEVCCIEPLHSKPELKDHPITQFSLLA-------------------------MASLTKI 326
Query: 667 LVVRLTPTLEVYAQIP--RPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAI 724
LV+ L P+L+V+ P R D ++P AW ++ + + V L +
Sbjct: 327 LVIGLKPSLKVWMTFPYGRMD---PSSVPLLAWH-FVAVQNYVNPMLAFCRGDVVHFLLV 382
Query: 725 AWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYLYARDGTVIHQ 784
D + + L +Y + L I W++ + +V+L + +L++ R +
Sbjct: 383 KRDESGAIHVTKQKHLHLY--YDL----INFTWINSRTVVLLDSVEKLHVIDRQTQEELE 436
Query: 785 TSFAVDGSQGYDLVGYRSYFTNVFGN--------PEKSYHNCVSVRGASIYVLGPMHLVV 836
T + Y+ ++S T GN EK+ + +S G I+ LG + V
Sbjct: 437 TVEISEVQLVYNSSHFKSLATG--GNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYV 494
Query: 837 SRLLPWKERIQVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRTLDAVQEAIMPYLVELLL 896
L W+ER+ L K AL +A + ++G+A V+ L + + +VE+L
Sbjct: 495 MMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASKRKAIVADRMVEILF 554
Query: 897 SYVDEVFSYISVAFCNQIEKLAQLNNPQSRSSTVHAEIKEQFTRVGGVAVEFCVHINRTD 956
Y D P V +++ F + V V++C+ + R D
Sbjct: 555 HYADRALK----------------KCPDQGKIQV---MEQHFQDMVPVIVDYCLLLQRKD 595
Query: 957 ILFDDIFSKF-EAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQC 1015
+LF ++ K E + FLE LEPYIL D L + P++M+ L+ H+ K ++ VE
Sbjct: 596 LLFSQMYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEAL 655
Query: 1016 VLHMDISSLDFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLVVLR------NSER 1069
++HMDI+SLD QVV +C E+ L+ A++Y++N+G+++F +P+E+L V+ +
Sbjct: 656 IVHMDITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLT 715
Query: 1070 ESAYALGYRMLVYLKYCFKGLAFPPGHGTLPSTRLPSLRAELVQFLLEESDAQNSQAASS 1129
+ +G ++LVY+ C G A+P G +P +P ++ ++ +FL+ A+ S
Sbjct: 716 DEQVVMGNKLLVYISCCLAGRAYPL--GDIPEDLVPLVKNQVFEFLIRLHSAEASPE--- 770
Query: 1130 LLLKGSYLNLYHLLELDTEATLDVLRCAFIEVETPKSDFYACDMADTNAEPNNGNKMVAE 1189
+ Y + LL DT L+VL F DF +K E
Sbjct: 771 ---EEIYPYIRTLLHFDTREFLNVLALTF-------EDF-------------KNDKQAVE 807
Query: 1190 YQNMLVQNTVNALVHILDEDISSTDGSASKDDSGSVEAWPSTKDIGHIFEFIACYVASGR 1249
YQ Q V+ L+ ++ + ++D + S+ +G +F F+A +A
Sbjct: 808 YQ----QRIVDILLKVM---VENSDFTPSQ--------------VGCLFTFLARQLAKPD 846
Query: 1250 AT--VSKSVLSQILQYLTSEKNVPQSILSHIETSKRREKQLLALLEAVPETDWNASEVLH 1307
T V++++ Q+L++L S P H E R++ LL LL+A + S ++
Sbjct: 847 NTLFVNRTLFDQVLEFLCS----PDDDSRHSE----RQQVLLELLQAGGIVQFEESRLIR 898
Query: 1308 LCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDEPICAFSFIHDTL--LQLTDNEYTAFH 1365
+ E A FYQ+C ++ + Y +D Y++D F++IH+ L + E +
Sbjct: 899 MAEKAEFYQICEFMYEREHQYDKIIDCYLRDPLREEEVFNYIHNILSIPGHSAEEKQSVW 958
Query: 1366 SAVISRIPELICLSREATFFLVIDQFNDEASHILSELRSHPKSLFLYLKTVVE----VHL 1421
+ I EL+ L LV F+ ++ +L++ LF +L+++++ +H+
Sbjct: 959 QKAMDHIEELVSLKPCKAAELVATHFSGHIETVIKKLQNQ-VLLFKFLRSLLDPREGIHV 1017
Query: 1422 HGTLNLSYLRKDDTLDVANCKWVKYQSKGLGAYIERISDLPKFLSSNAVHVTDDMIELYL 1481
+ L L ++ C + E ++
Sbjct: 1018 NQEL----------LQISPC----------------------------------ITEQFI 1033
Query: 1482 ELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSEL 1541
ELLC++ V++ L+ + YR+E +++ Q+Y + + A+LLE+ GD+ A L+ L L
Sbjct: 1034 ELLCQFNPTQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKKGDIHGAFLIMLERL 1093
Query: 1542 NDKFAALETAVGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLN 1601
K + G + E S + DV + + I LCQRN+ LN
Sbjct: 1094 QSKLQEV-----------THQGENTKEDPS-------LKDVEDTMVETIALCQRNSHNLN 1135
Query: 1602 PEESEVLWFKLLDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSH 1661
++ E LWF LL++ P Q+ + + I H
Sbjct: 1136 QQQREALWFPLLEAMMAP-------------------------QKLSSSAI-------PH 1163
Query: 1662 RGSHILRKLFSQFIKEIVEGMIGYVHLPTIMSKLLSD--NGSQEFGDFKLTILGMLGTYS 1719
S L+ L Q ++ M ++ LP+I+ ++L D G + G+ + ILGML T++
Sbjct: 1164 LHSEALKSLTMQ----VLNSMAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTFN 1219
Query: 1720 FERRILDTAKSLIEDDTFYTMSVLKKEASHGYAPRSLLCCIC-NCLLTKNSSSFQIRVFN 1778
+E+ +L+T SL+ D +++ L+ + G P+ C IC + + +I VF+
Sbjct: 1220 YEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQYKRRQEMADEIIVFS 1279
Query: 1779 CGHATHIQC 1787
CGH H C
Sbjct: 1280 CGHLYHSFC 1288
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS8 PE=1 SV=2
Length = 1274
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 965 KFEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSL 1024
+F ++ + E++ + + + S+ P + ++++++Y+ + L+ +E ++ ++ ++L
Sbjct: 529 EFFELKDNAVYFEVVANIVAQGSVTSISPVLFRSIIDYYAKEENLKVIEDLIIMLNPTTL 588
Query: 1025 DFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLVVLRNSERESAYALGYR------ 1078
D + V+LC+++ L L+Y++NK DD++ P+ +L+ + N + G +
Sbjct: 589 DVDLAVKLCQKYNLFDLLIYIWNKIFDDYQTPVVDLIYRISNQSEKCVIFNGPQVPPETT 648
Query: 1079 MLVYLKYCFKGLAFPPGHGTLPSTRLPSLRAELVQFLL 1116
+ Y+ Y G +P PS + ++ EL F+
Sbjct: 649 IFDYVTYILTGRQYPQNLSISPSDKCSKIQRELSAFIF 686
>sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4
OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1
Length = 395
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+++CFN+ G L +G DG V +WD + K + E P+ H F
Sbjct: 234 PVSSVCFNRDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKF 283
>sp|O13756|VPS8_SCHPO Vacuolar protein sorting-associated protein 8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=vps8 PE=3 SV=1
Length = 1272
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 958 LFDDIFSKFEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVL 1017
+ + I F V LE L IL + P++ ++ + + LQ +++ +
Sbjct: 559 IIEQIIPVFTRVGKVYVVLEALFDLILSQRFTNPSPQLQHHILNYLNDCKRLQDMDKLIP 618
Query: 1018 HMDISSLDFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLVVLR---NSERESAYA 1074
++ SLD + + + R GL +L Y+ +D+ PL + L +L+ +S E
Sbjct: 619 CIEYQSLDLDFITKFSRSKGLFDSLCYVSIYAFNDYSIPLVQFLNLLKSDIDSPSEETSI 678
Query: 1075 LGYRMLVYLKYCFKGLAFPPGHG 1097
+ +L Y G+ +P GH
Sbjct: 679 NVEKGFHFLLYSLTGMKYPLGHS 701
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA-PVTAMCFNQPG 508
+A + + G S G +++ + + D +++ GL + S PVT++ +
Sbjct: 99 IAYQGTLLVAGTSSGHVLLNDWR-------TNDFQILKPGLSSNESVTLPVTSLAISNSK 151
Query: 509 DLLLAGYADGHVTVWDVQRASAAKVIT-GEHT--SPVVHTLFLGQDSQVTRQFKAVTGDT 565
++ G+A G + VWDV R ++ T +H+ S + H +F G V ++ D
Sbjct: 152 RIVCQGHAGGIIFVWDVSRKPPLQLFTINQHSEDSVLTHLVFNGNSDDV-----LLSTDH 206
Query: 566 KGLVQLH 572
G + +H
Sbjct: 207 LGKIAVH 213
>sp|P38959|VPS41_YEAST Vacuolar protein sorting-associated protein 41 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS41 PE=1
SV=2
Length = 992
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1461 LPKFLSSNAVHVTDDMIELYLELLCRYERDSVLKFLETFDSYRVEYCLRLC-QEYGITDA 1519
L KFL ++ + +EL Y+R S+L FL+ ++Y VE + +C + G+ +
Sbjct: 785 LIKFLDTDDSFMISPYENQLIELYSEYDRQSLLPFLQKHNNYNVESAIEVCSSKLGLYNE 844
Query: 1520 AAFLLERVGDVGSALLLTLSELNDKFAALE 1549
+L ++G+ AL L + EL + A++
Sbjct: 845 LIYLWGKIGETKKALSLIIDELKNPQLAID 874
>sp|Q5KU39|VPS41_MOUSE Vacuolar protein sorting-associated protein 41 homolog OS=Mus
musculus GN=Vps41 PE=2 SV=1
Length = 853
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 1478 ELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLT 1537
E + L Y+R ++L FL +E L +CQ+ + +LL R+G+ SAL +
Sbjct: 613 EKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI 672
Query: 1538 LSELNDKFAALETA 1551
+ EL+D A+E A
Sbjct: 673 MEELHDVDKAIEFA 686
>sp|P49754|VPS41_HUMAN Vacuolar protein sorting-associated protein 41 homolog OS=Homo
sapiens GN=VPS41 PE=1 SV=3
Length = 854
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 1478 ELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLT 1537
E + L Y+R ++L FL +E L +CQ+ + +LL R+G+ SAL +
Sbjct: 614 EKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMI 673
Query: 1538 LSELNDKFAALETA 1551
+ EL+D A+E A
Sbjct: 674 MEELHDVDKAIEFA 687
>sp|Q6TEN6|WDR91_DANRE WD repeat-containing protein 91 OS=Danio rerio GN=wdr91 PE=1 SV=2
Length = 724
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 397 LHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVL--AVHP 454
L W AA+P RL + G T+ +D DA + + D P++L A P
Sbjct: 439 LEW----AAKPDRLLLLGSGVGTVKLYDTDAKKCLYEMTI------DDVHPRILSLACSP 488
Query: 455 S---FI-AVGMSKGAIVVVPGKYSAHHRDSM---DSKMMMLGLLGDRSPAPVTAMC--FN 505
S F+ + GA++ + SA + D+K + L P PV C FN
Sbjct: 489 SGTSFVCSAAAHSGAVMESEPRGSAPVSGQLLLWDTKTVKQQLQFALEPGPVAINCTAFN 548
Query: 506 QPGDLLLAGYADGHVTVWDVQRASAA 531
G+LL+ G ADG + ++D+QR +A
Sbjct: 549 HNGNLLVTGAADGIIRLFDMQRYESA 574
>sp|Q9P7N3|VPS41_SCHPO Vacuolar protein sorting-associated protein 41 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=vps41 PE=3 SV=2
Length = 871
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 1478 ELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLT 1537
+L L++ ++R FL Y +++ ++C++Y D ++L R+G+ AL+L
Sbjct: 618 DLKLDVFAEFDRKRFFDFLVNTQCYSLDHAAQICKQYNYLDELVYILGRMGNNKEALMLI 677
Query: 1538 LSELND 1543
++EL D
Sbjct: 678 INELLD 683
>sp|Q9EQ15|GNB1L_MOUSE Guanine nucleotide-binding protein subunit beta-like protein 1
OS=Mus musculus GN=Gnb1l PE=2 SV=2
Length = 326
Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 27/135 (20%)
Query: 458 AVGMSKGAIVV---------VPGKYSAHHRD-SMDSKMMMLGLLGDRSPAPVTAMCFN-- 505
+VG +G+I+V VPGK S + M SK + L + P MC
Sbjct: 111 SVGFCRGSILVRGQQCWMLAVPGKGSDEVQILEMPSKTSVCTLKPEADARPGMPMCLGLW 170
Query: 506 ------QPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFK 559
+P LLLAGY DG VT+WD+ IT H PV+ F DSQ + K
Sbjct: 171 QTNSSLRP--LLLAGYEDGSVTLWDISERKVCSQITC-HEEPVMGLDF---DSQ---KAK 221
Query: 560 AVTGDTKGLVQLHSL 574
++G ++ + SL
Sbjct: 222 GISGSAGKVLAVWSL 236
>sp|B0WYR6|WDY_CULQU WD repeat-containing protein on Y chromosome OS=Culex
quinquefasciatus GN=WDY PE=4 SV=2
Length = 1033
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 11/94 (11%)
Query: 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQ 553
+ P VT ++ D L+ G DG + +WD++R H + VV +FL SQ
Sbjct: 353 KVPKGVTCFAYDHVKDFLVTGGPDGELRMWDIRRPENPVASLSGHNAGVVF-MFLQDGSQ 411
Query: 554 VTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKT 587
K + DTK +V++ +LNR I+T
Sbjct: 412 -----KIYSMDTKKIVKIWD-----VLNRILIQT 435
>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae
GN=tag-125 PE=4 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+ +G DG V +WD K + + PV F
Sbjct: 207 PVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCVKTLVDDENPPVAFVKF 256
>sp|P93043|VPS41_ARATH Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis
thaliana GN=VPS41 PE=3 SV=3
Length = 980
Score = 40.0 bits (92), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 1475 DMIELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSAL 1534
D ++ +EL Y+ +L FL + Y++E LC + F+L R+G+ AL
Sbjct: 668 DFHDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRMGNAKQAL 727
Query: 1535 LLTLSELNDKFAALE 1549
+ +++L D A+E
Sbjct: 728 AVIINKLGDIEEAVE 742
>sp|Q6CME1|RTC1_KLULA Restriction of telomere capping protein 1 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=RTC1 PE=3 SV=1
Length = 1321
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQC--ELLENESSSKSNLSGCPLCMP 1808
R+ LCC CN K S I + NCGH H +C + +E N+ CPL P
Sbjct: 1270 RNTLCCFCN----KPMKSLAISMLNCGHEGHFECLKKWFFDE-----NMDVCPLGCP 1317
>sp|P93231|VPS41_SOLLC Vacuolar protein sorting-associated protein 41 homolog OS=Solanum
lycopersicum GN=VPS41 PE=2 SV=1
Length = 960
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 1470 VHVTDDMIELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGD 1529
+H D ++ +EL Y+ +L FL + Y +E +C + + F+L R+G+
Sbjct: 648 LHAGKDYHDMQVELYADYDPKMLLTFLRSSQHYTLEKAYEICVKKDLLKEQVFILGRMGN 707
Query: 1530 VGSALLLTLSELNDKFAALE 1549
AL + ++ L D A+E
Sbjct: 708 AKQALAVIINRLGDIEEAIE 727
>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans
GN=tag-125 PE=4 SV=1
Length = 376
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PV+A+ FN+ G L+ +G DG V +WD K + + PV F
Sbjct: 215 PVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKF 264
>sp|Q5GIS3|GBB_PINFU Guanine nucleotide-binding protein subunit beta OS=Pinctada fucata
PE=1 SV=1
Length = 341
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 442 RDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA---- 497
RD Q + H S I AI P Y A S D+ + + D+
Sbjct: 215 RDGMCKQTFSGHESDI------NAITYFPNGY-AFATGSDDATCRLFDIRADQEIGMYSH 267
Query: 498 -----PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITG 536
+T++ F++ G LLL GY D + VWDV R A V+ G
Sbjct: 268 DNIICGITSVAFSKSGRLLLGGYDDFNCNVWDVLRQERAGVLAG 311
>sp|Q05B30|WDR91_XENTR WD repeat-containing protein 91 OS=Xenopus tropicalis GN=wdr91 PE=2
SV=1
Length = 751
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMC--FNQPGDLL 511
P++ + G S VPGK D+K M L P P+ C FN G+LL
Sbjct: 529 PTYYSYGESGNN--QVPGKLLL-----WDTKTMKQQLQFSLEPVPIAVNCTAFNHNGNLL 581
Query: 512 LAGYADGHVTVWDVQRASAA 531
+ G ADG + ++D+Q+ A
Sbjct: 582 VTGAADGFIRLFDMQQHQCA 601
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Homarus americanus GN=GBETA1 PE=2 SV=1
Length = 340
Score = 38.9 bits (89), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD R A V+ G
Sbjct: 273 ITSVAFSKSGKLLLAGYDDFNCNVWDSMRTERAGVLAGH 311
>sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Xenopus laevis GN=gnb1 PE=2 SV=1
Length = 340
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVAFSKSGRLLLAGYDDFNCNVWDTLKADRAGVLAGH 311
>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Danio rerio GN=gnb1 PE=2 SV=1
Length = 340
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVAFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|Q5ZLL7|WDR91_CHICK WD repeat-containing protein 91 OS=Gallus gallus GN=WDR91 PE=2 SV=1
Length = 751
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMC--FNQPGDL 510
H F V ++ VPGK D+K M L P P+ C FN G+L
Sbjct: 526 HMDFSVVTSGGKSMNQVPGKLLL-----WDTKTMKQQLQFSLEPEPIAINCTAFNHNGNL 580
Query: 511 LLAGYADGHVTVWDVQRASAA 531
L+ G ADG V ++D+Q+ A
Sbjct: 581 LVTGAADGIVRLFDMQQHECA 601
>sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Rattus norvegicus GN=Gnb1 PE=1 SV=4
Length = 340
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|P62874|GBB1_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Mus musculus GN=Gnb1 PE=1 SV=3
Length = 340
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|P62873|GBB1_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Homo sapiens GN=GNB1 PE=1 SV=3
Length = 340
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|P62872|GBB1_CANFA Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Canis familiaris GN=GNB1 PE=2 SV=3
Length = 340
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|P62871|GBB1_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Bos taurus GN=GNB1 PE=1 SV=3
Length = 340
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|Q6TMK6|GBB1_CRIGR Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Cricetulus griseus GN=GNB1 PE=2 SV=3
Length = 340
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|Q5R5W8|GBB1_PONAB Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Pongo abelii GN=GNB1 PE=2 SV=3
Length = 340
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A A V+ G
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis
GN=katnb1 PE=1 SV=1
Length = 655
Score = 38.5 bits (88), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514
S + +G S G +V G H S++ ++ L G +P V ++ FN +L++AG
Sbjct: 24 SSVVLGRSSGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTP--VESVRFNNSEELIVAG 81
Query: 515 YADGHVTVWDVQRASAAKVITG 536
G + +WD++ A + + G
Sbjct: 82 SQSGSLRIWDLEAAKILRTLMG 103
>sp|O35353|GBB4_RAT Guanine nucleotide-binding protein subunit beta-4 OS=Rattus
norvegicus GN=Gnb4 PE=2 SV=4
Length = 340
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
D +T++ F++ G LLLAGY D + +VWD + A V+ G
Sbjct: 267 DNIICGITSVAFSKSGRLLLAGYDDFNCSVWDALKGGRAGVLAGH 311
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein subunit beta-1 OS=Drosophila
melanogaster GN=Gbeta13F PE=1 SV=1
Length = 340
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD +A + ++ G
Sbjct: 273 ITSVAFSKSGRLLLAGYDDFNCNVWDTMKAERSGILAGH 311
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein subunit beta-4 OS=Homo sapiens
GN=GNB4 PE=1 SV=3
Length = 340
Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + VWD + A V+ G
Sbjct: 273 ITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGH 311
>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1
Length = 328
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 56/145 (38%), Gaps = 5/145 (3%)
Query: 448 QVLAVHPSFI-AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ 506
+ L+ H I AV + ++V G Y R + L L D PV+ + F+
Sbjct: 159 KTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSP 218
Query: 507 PGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566
G +L D + +WD R K TG + LF VT + V+G
Sbjct: 219 NGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEK--YCLF--ASFSVTGRKWVVSGSED 274
Query: 567 GLVQLHSLSVVPLLNRFSIKTQCLL 591
+V + +L ++ R T ++
Sbjct: 275 NMVYIWNLQTKEIVQRLQGHTDVVI 299
>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4
Length = 340
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + +WD + A V+ G
Sbjct: 273 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGH 311
>sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Mus musculus GN=Gnb2 PE=1 SV=3
Length = 340
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + +WD + A V+ G
Sbjct: 273 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGH 311
>sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Homo sapiens GN=GNB2 PE=1 SV=3
Length = 340
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + +WD + A V+ G
Sbjct: 273 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGH 311
>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Bos taurus GN=GNB2 PE=2 SV=3
Length = 340
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLLAGY D + +WD + A V+ G
Sbjct: 273 ITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGH 311
>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum
GN=wdr5 PE=3 SV=1
Length = 335
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQF 558
V + FN +L+++G D +V +WDV K+I+ H+ PV F +D +
Sbjct: 133 VFGVSFNPQSNLIVSGSFDENVRIWDVNTGECTKMISA-HSDPVTGVHF-NRDGTL---- 186
Query: 559 KAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599
V+G G V++ + LLN S + DG++ V
Sbjct: 187 -VVSGSYDGTVRIWDTTTGQLLNTISTE-----DGKEVSFV 221
Score = 35.4 bits (80), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLF 547
PVT + FN+ G L+++G DG V +WD I+ E V F
Sbjct: 174 PVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKF 223
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein subunit beta OS=Loligo forbesi
PE=2 SV=1
Length = 341
Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
+T++ F++ G LLL GY D + VWDV + A V+ G
Sbjct: 274 ITSVAFSKSGRLLLGGYDDFNCNVWDVLKQERAGVLAGH 312
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514
S + +G + G ++ G + S++ ++ L G SP V ++ N P +L++AG
Sbjct: 24 SSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP--VESVRLNTPEELIVAG 81
Query: 515 YADGHVTVWDVQRASAAKVITG 536
G + VWD++ A + + G
Sbjct: 82 SQSGSIRVWDLEAAKILRTLMG 103
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514
S + +G + G ++ G + S++ ++ L G SP V ++ N P +L++AG
Sbjct: 24 SSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP--VESVRLNTPEELIVAG 81
Query: 515 YADGHVTVWDVQRASAAKVITG 536
G + VWD++ A + + G
Sbjct: 82 SQSGSIRVWDLEAAKILRTLMG 103
>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis
GN=katnb1 PE=2 SV=1
Length = 655
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514
S + +G S G +V G + S++ ++ L G +P V ++ FN +L++AG
Sbjct: 24 SSVVLGKSSGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTP--VESVRFNNAEELIVAG 81
Query: 515 YADGHVTVWDVQRASAAKVITG 536
G + VWD++ A + + G
Sbjct: 82 SQSGSLRVWDLEAAKILRTLMG 103
>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans
GN=T10F2.4 PE=3 SV=2
Length = 492
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 334 DDEVGVDGSNDASSIDDISELVEERIGQLESEITSRRAEKKVQPSLKPLELAE-----EL 388
DD+V +D S D L E + +LE + S AE+K + P LA+ EL
Sbjct: 144 DDDVSIDESEDQQG------LSEAILAKLEEKSKSLTAERKQRGKNLPEGLAKTEELAEL 197
Query: 389 EKKQASTGLHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQ 448
++ + TG+H G+ + D+ N ++T I D+ Q
Sbjct: 198 KQTASHTGIH---------------STGTPGITALDIKGNLSLTGGIDKTVVLYDYEKEQ 242
Query: 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL-------LGDRSPAPVTA 501
V+ +F A+V+ P +A S DS + + + D APVT
Sbjct: 243 VM---QTFKGHNKKINAVVLHPDNITAISA-SADSHIRVWSATDSSSKAIIDVHQAPVTD 298
Query: 502 MCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPV-VHTL 546
+ N GD +L+ D + D++ + ++ E S + VH++
Sbjct: 299 ISLNASGDYILSASDDSYWAFSDIRSGKSLCKVSVEPGSQIAVHSI 344
>sp|Q9D994|WDR38_MOUSE WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1
Length = 303
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 483 SKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPV 542
S ++ L G R PV + CF+ G L+ + +D + +WDV R+ V+ G S
Sbjct: 57 SGRLLWRLAGHR--GPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRS-- 112
Query: 543 VHTLFLGQDSQVTRQFKAVTGDTKGLV 569
V T+ DS +Q + D + +V
Sbjct: 113 VETVSFSPDS---KQLASGGWDKRAIV 136
>sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2
SV=1
Length = 305
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQ 553
P+ ++ F+ LL+ DG++ ++DVQ AS A ++G H S V++ F D+
Sbjct: 192 PIRSLTFSTDSQLLVTASDDGYIKIYDVQHASLAATLSG-HGSWVLNVAFSPDDAH 246
>sp|Q23256|YH92_CAEEL Uncharacterized WD repeat-containing protein ZC302.2
OS=Caenorhabditis elegans GN=ZC302.2 PE=4 SV=1
Length = 501
Score = 35.4 bits (80), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 488 LGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537
L L D APVT +CF+ G LL+ D + +WD ++A K G
Sbjct: 374 LKTLVDTDHAPVTFVCFSPNGKYLLSAQLDSSLKLWDPKKAKPLKYYNGH 423
>sp|Q9ERF3|WDR61_MOUSE WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=2 SV=1
Length = 305
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQ 553
P+ ++ F+ LL+ DG++ ++DVQ A+ A ++G H S V++ F D+
Sbjct: 192 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTH 246
>sp|Q4V7A0|WDR61_RAT WD repeat-containing protein 61 OS=Rattus norvegicus GN=Wdr61 PE=1
SV=1
Length = 305
Score = 35.0 bits (79), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQ 553
P+ ++ F+ LL+ DG++ ++DVQ A+ A ++G H S V++ F D+
Sbjct: 192 PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTH 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 691,602,095
Number of Sequences: 539616
Number of extensions: 29260572
Number of successful extensions: 97616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 227
Number of HSP's that attempted gapping in prelim test: 96250
Number of HSP's gapped (non-prelim): 1104
length of query: 1950
length of database: 191,569,459
effective HSP length: 133
effective length of query: 1817
effective length of database: 119,800,531
effective search space: 217677564827
effective search space used: 217677564827
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)