Query 000170
Match_columns 1950
No_of_seqs 348 out of 1465
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2079 Vacuolar assembly/sort 100.0 1.2E-95 3E-100 909.6 59.6 1112 356-1789 2-1165(1206)
2 PF12816 Vps8: Golgi CORVET co 100.0 9.9E-49 2.1E-53 437.9 17.1 186 972-1158 1-196 (196)
3 KOG2066 Vacuolar assembly/sort 100.0 1.7E-42 3.8E-47 426.1 61.9 384 1241-1812 442-836 (846)
4 KOG2114 Vacuolar assembly/sort 99.9 3.1E-21 6.8E-26 240.5 63.9 380 1300-1812 464-884 (933)
5 KOG0291 WD40-repeat-containing 99.4 2.2E-11 4.7E-16 151.4 26.4 235 445-778 308-550 (893)
6 KOG2034 Vacuolar sorting prote 99.4 2.1E-11 4.5E-16 155.5 26.5 319 1287-1789 509-847 (911)
7 KOG0294 WD40 repeat-containing 99.3 6.4E-11 1.4E-15 136.0 20.8 121 439-586 38-160 (362)
8 KOG0271 Notchless-like WD40 re 99.3 7.3E-12 1.6E-16 145.9 13.1 143 439-604 110-255 (480)
9 KOG2063 Vacuolar assembly/sort 99.3 5.6E-11 1.2E-15 155.7 22.2 353 1306-1789 498-864 (877)
10 KOG0263 Transcription initiati 99.3 3.5E-12 7.7E-17 160.3 10.5 97 441-550 532-630 (707)
11 KOG0272 U4/U6 small nuclear ri 99.2 1.7E-11 3.7E-16 144.9 10.4 135 443-604 302-438 (459)
12 KOG0271 Notchless-like WD40 re 99.2 2.3E-11 5.1E-16 141.8 10.5 137 439-603 152-297 (480)
13 smart00299 CLH Clathrin heavy 99.2 1.7E-10 3.7E-15 123.6 13.5 127 1393-1618 8-137 (140)
14 KOG0291 WD40-repeat-containing 99.2 2.2E-09 4.8E-14 134.0 24.5 136 443-604 349-488 (893)
15 KOG0319 WD40-repeat-containing 99.2 8.6E-11 1.9E-15 146.5 10.9 136 443-606 462-599 (775)
16 KOG0266 WD40 repeat-containing 99.2 1.9E-10 4.2E-15 146.6 14.6 122 446-593 205-330 (456)
17 KOG2079 Vacuolar assembly/sort 99.1 3.9E-12 8.6E-17 163.1 -2.6 446 442-964 128-609 (1206)
18 PTZ00421 coronin; Provisional 99.1 8.3E-09 1.8E-13 132.2 26.8 138 439-597 70-211 (493)
19 KOG0275 Conserved WD40 repeat- 99.1 3.9E-11 8.5E-16 136.7 4.4 130 447-599 216-351 (508)
20 KOG0640 mRNA cleavage stimulat 99.1 3.2E-10 7E-15 129.4 10.5 139 432-593 202-345 (430)
21 cd00200 WD40 WD40 domain, foun 99.1 3.2E-08 7E-13 113.2 27.1 116 440-574 5-122 (289)
22 KOG0296 Angio-associated migra 99.1 1E-08 2.3E-13 120.1 22.6 118 439-575 59-178 (399)
23 PTZ00420 coronin; Provisional 99.1 1.2E-08 2.5E-13 131.8 24.8 140 439-599 69-212 (568)
24 KOG0266 WD40 repeat-containing 99.1 1E-09 2.2E-14 140.1 14.9 134 444-603 159-295 (456)
25 KOG0276 Vesicle coat complex C 99.0 2.6E-08 5.5E-13 122.5 24.8 134 416-573 117-255 (794)
26 KOG0272 U4/U6 small nuclear ri 99.0 1.5E-09 3.3E-14 128.8 11.9 141 438-606 211-355 (459)
27 KOG0273 Beta-transducin family 99.0 4.3E-08 9.4E-13 117.9 23.6 132 445-606 236-369 (524)
28 KOG0263 Transcription initiati 99.0 1.3E-09 2.9E-14 137.6 11.3 136 441-604 448-587 (707)
29 KOG0315 G-protein beta subunit 99.0 1.2E-09 2.6E-14 122.3 9.3 129 424-574 24-153 (311)
30 KOG1273 WD40 repeat protein [G 99.0 1.9E-09 4.2E-14 123.7 10.9 94 443-550 22-117 (405)
31 KOG0279 G protein beta subunit 99.0 3.7E-09 8E-14 120.3 12.0 129 450-604 71-202 (315)
32 KOG0285 Pleiotropic regulator 98.9 8.9E-09 1.9E-13 119.9 14.7 150 424-606 136-287 (460)
33 KOG0294 WD40 repeat-containing 98.9 2.5E-08 5.4E-13 115.2 18.1 233 457-779 4-238 (362)
34 KOG0279 G protein beta subunit 98.9 4.9E-09 1.1E-13 119.3 12.2 104 444-566 148-255 (315)
35 KOG0292 Vesicle coat complex C 98.9 3.5E-09 7.6E-14 133.6 12.0 141 443-611 8-150 (1202)
36 KOG0276 Vesicle coat complex C 98.9 2.5E-09 5.4E-14 131.1 10.3 143 439-606 92-237 (794)
37 KOG0318 WD40 repeat stress pro 98.9 3.9E-09 8.5E-14 127.8 11.6 111 447-571 446-558 (603)
38 KOG0973 Histone transcription 98.9 1.8E-08 4E-13 131.2 17.1 118 440-566 65-193 (942)
39 cd00200 WD40 WD40 domain, foun 98.9 3.3E-07 7.2E-12 104.9 25.2 113 443-574 50-164 (289)
40 KOG0285 Pleiotropic regulator 98.9 3.7E-08 8.1E-13 114.8 17.0 144 443-614 192-337 (460)
41 PLN00181 protein SPA1-RELATED; 98.9 3.9E-07 8.4E-12 124.4 30.0 121 442-573 481-604 (793)
42 KOG0310 Conserved WD40 repeat- 98.9 6.2E-08 1.3E-12 117.3 18.8 222 450-773 76-303 (487)
43 KOG0275 Conserved WD40 repeat- 98.9 4E-09 8.7E-14 120.6 8.1 142 439-606 258-402 (508)
44 PLN00181 protein SPA1-RELATED; 98.9 3.3E-07 7.2E-12 125.0 28.3 131 445-603 533-668 (793)
45 KOG0319 WD40-repeat-containing 98.8 1.5E-08 3.3E-13 126.9 13.3 147 439-606 406-557 (775)
46 KOG0306 WD40-repeat-containing 98.8 1.1E-08 2.3E-13 128.1 11.0 132 445-604 66-199 (888)
47 PTZ00421 coronin; Provisional 98.8 1.8E-06 3.9E-11 111.0 31.5 97 493-604 72-176 (493)
48 KOG0318 WD40 repeat stress pro 98.8 5.1E-07 1.1E-11 110.0 24.4 141 397-566 109-258 (603)
49 PF10367 Vps39_2: Vacuolar sor 98.8 2E-08 4.3E-13 103.0 10.6 104 1678-1788 3-107 (109)
50 KOG0286 G-protein beta subunit 98.8 5.1E-08 1.1E-12 111.7 14.4 139 439-604 181-325 (343)
51 PF00637 Clathrin: Region in C 98.8 5.9E-10 1.3E-14 119.8 -1.6 96 1473-1618 41-137 (143)
52 KOG0284 Polyadenylation factor 98.8 1.1E-08 2.4E-13 121.0 8.7 152 422-606 120-274 (464)
53 KOG0273 Beta-transducin family 98.8 7.3E-08 1.6E-12 116.0 15.3 168 424-606 261-462 (524)
54 KOG0295 WD40 repeat-containing 98.7 6.6E-08 1.4E-12 113.5 13.1 126 446-599 237-379 (406)
55 KOG0274 Cdc4 and related F-box 98.7 1.1E-07 2.3E-12 122.7 15.0 142 429-602 234-377 (537)
56 KOG0281 Beta-TrCP (transducin 98.7 1.1E-08 2.4E-13 118.4 4.8 139 441-599 234-403 (499)
57 KOG0267 Microtubule severing p 98.7 1.4E-08 3.1E-13 126.6 6.0 150 427-604 53-204 (825)
58 KOG0264 Nucleosome remodeling 98.7 1.2E-07 2.6E-12 114.3 13.4 245 302-606 124-383 (422)
59 KOG0286 G-protein beta subunit 98.7 1.2E-07 2.6E-12 108.7 12.6 110 439-566 140-251 (343)
60 KOG0647 mRNA export protein (c 98.7 3.5E-07 7.5E-12 105.5 15.7 115 445-583 28-145 (347)
61 KOG0281 Beta-TrCP (transducin 98.7 4.7E-08 1E-12 113.2 8.8 92 443-549 196-287 (499)
62 KOG0645 WD40 repeat protein [G 98.6 3.8E-07 8.2E-12 103.9 14.9 133 446-604 63-205 (312)
63 KOG0289 mRNA splicing factor [ 98.6 1.7E-07 3.7E-12 111.9 12.4 99 447-562 350-450 (506)
64 KOG0265 U5 snRNP-specific prot 98.6 5E-07 1.1E-11 104.2 14.9 114 443-573 46-161 (338)
65 KOG0274 Cdc4 and related F-box 98.6 1.4E-07 3E-12 121.6 11.6 132 441-602 328-460 (537)
66 KOG0284 Polyadenylation factor 98.6 5.5E-08 1.2E-12 115.3 6.8 135 445-607 181-317 (464)
67 KOG0295 WD40 repeat-containing 98.6 2E-07 4.2E-12 109.6 11.1 140 449-604 200-344 (406)
68 KOG0299 U3 snoRNP-associated p 98.6 1.4E-07 3.1E-12 113.5 10.2 150 441-607 139-297 (479)
69 KOG0306 WD40-repeat-containing 98.6 2.2E-07 4.8E-12 116.6 11.8 133 446-606 510-644 (888)
70 KOG0302 Ribosome Assembly prot 98.6 2.2E-07 4.8E-12 109.5 11.0 135 416-566 230-370 (440)
71 KOG0265 U5 snRNP-specific prot 98.6 7.1E-07 1.5E-11 102.9 14.8 126 440-593 128-260 (338)
72 PTZ00420 coronin; Provisional 98.6 7.3E-07 1.6E-11 115.5 16.3 91 442-546 123-216 (568)
73 KOG0293 WD40 repeat-containing 98.6 1.4E-07 3E-12 111.8 8.7 119 450-581 232-350 (519)
74 KOG0315 G-protein beta subunit 98.6 9.1E-07 2E-11 99.7 14.4 134 445-599 168-304 (311)
75 KOG0283 WD40 repeat-containing 98.5 7.8E-07 1.7E-11 114.1 15.6 98 494-609 265-422 (712)
76 KOG0305 Anaphase promoting com 98.5 1.5E-06 3.2E-11 109.1 17.8 132 444-604 217-353 (484)
77 KOG0973 Histone transcription 98.5 2.3E-07 5E-12 121.3 10.9 139 447-604 16-181 (942)
78 KOG0646 WD40 repeat protein [G 98.5 3.6E-07 7.8E-12 110.3 11.7 147 440-605 119-330 (476)
79 KOG0292 Vesicle coat complex C 98.5 6.7E-07 1.5E-11 113.7 13.3 121 439-576 46-168 (1202)
80 KOG1274 WD40 repeat protein [G 98.5 4.7E-06 1E-10 107.4 20.8 113 444-575 55-168 (933)
81 KOG0282 mRNA splicing factor [ 98.5 8.3E-08 1.8E-12 116.0 4.9 140 440-606 210-352 (503)
82 KOG2048 WD40 repeat protein [G 98.5 9.7E-07 2.1E-11 110.5 14.2 116 443-575 109-233 (691)
83 KOG1539 WD repeat protein [Gen 98.5 5.4E-07 1.2E-11 114.5 11.8 100 439-550 197-299 (910)
84 KOG0289 mRNA splicing factor [ 98.5 1.3E-06 2.9E-11 104.4 14.0 115 443-574 302-418 (506)
85 KOG0283 WD40 repeat-containing 98.5 1.7E-06 3.7E-11 111.1 15.6 119 442-566 265-433 (712)
86 KOG0308 Conserved WD40 repeat- 98.5 1.1E-06 2.3E-11 109.4 13.1 110 446-574 173-284 (735)
87 KOG0299 U3 snoRNP-associated p 98.5 4.3E-06 9.3E-11 101.1 17.6 134 442-604 200-335 (479)
88 KOG0288 WD40 repeat protein Ti 98.4 1E-06 2.3E-11 105.0 12.0 113 443-569 340-455 (459)
89 KOG0316 Conserved WD40 repeat- 98.4 8.3E-07 1.8E-11 99.3 10.5 108 446-574 147-256 (307)
90 KOG0313 Microtubule binding pr 98.4 8.2E-07 1.8E-11 104.9 9.5 94 447-550 303-400 (423)
91 KOG4283 Transcription-coupled 98.4 8E-07 1.7E-11 101.8 8.4 111 450-586 154-279 (397)
92 KOG1539 WD repeat protein [Gen 98.4 2.8E-06 6.1E-11 108.3 13.8 123 439-585 443-608 (910)
93 KOG1407 WD40 repeat protein [F 98.4 1.7E-06 3.6E-11 98.3 10.3 103 445-566 190-294 (313)
94 KOG1332 Vesicle coat complex C 98.3 5.7E-06 1.2E-10 93.3 14.0 164 418-604 33-217 (299)
95 KOG0643 Translation initiation 98.3 4.2E-06 9.1E-11 95.3 12.8 141 439-593 47-230 (327)
96 KOG0269 WD40 repeat-containing 98.3 1E-06 2.3E-11 111.4 8.6 100 439-550 171-274 (839)
97 KOG0772 Uncharacterized conser 98.3 3.6E-06 7.8E-11 102.4 12.6 111 445-566 269-387 (641)
98 KOG0645 WD40 repeat protein [G 98.3 9.2E-06 2E-10 92.9 14.9 142 442-604 12-160 (312)
99 KOG1332 Vesicle coat complex C 98.3 5.1E-06 1.1E-10 93.7 12.6 133 452-604 21-159 (299)
100 KOG3621 WD40 repeat-containing 98.3 7.8E-05 1.7E-09 94.6 24.0 112 447-575 38-154 (726)
101 KOG0316 Conserved WD40 repeat- 98.3 3.2E-06 6.9E-11 94.7 10.5 114 441-581 14-129 (307)
102 KOG2110 Uncharacterized conser 98.3 5E-06 1.1E-10 98.5 12.5 104 446-566 131-240 (391)
103 KOG1274 WD40 repeat protein [G 98.3 3.5E-06 7.7E-11 108.5 12.2 108 447-570 99-215 (933)
104 KOG0640 mRNA cleavage stimulat 98.3 1.8E-06 4E-11 99.4 8.6 133 442-598 170-306 (430)
105 KOG2321 WD40 repeat protein [G 98.3 3.5E-06 7.6E-11 103.6 11.2 125 440-583 171-302 (703)
106 KOG0270 WD40 repeat-containing 98.3 1.5E-06 3.2E-11 104.7 7.8 109 454-573 192-315 (463)
107 KOG0301 Phospholipase A2-activ 98.3 3.5E-06 7.6E-11 105.8 11.3 149 416-605 79-228 (745)
108 KOG0643 Translation initiation 98.2 7.9E-06 1.7E-10 93.2 12.2 101 447-566 13-115 (327)
109 KOG0310 Conserved WD40 repeat- 98.2 9.7E-06 2.1E-10 98.8 13.7 113 420-550 92-207 (487)
110 KOG0772 Uncharacterized conser 98.2 5.1E-06 1.1E-10 101.2 10.8 96 446-550 319-420 (641)
111 KOG0264 Nucleosome remodeling 98.2 7.7E-06 1.7E-10 99.1 12.2 112 440-567 268-396 (422)
112 KOG0282 mRNA splicing factor [ 98.2 4.7E-06 1E-10 101.3 10.2 136 444-606 298-484 (503)
113 KOG0646 WD40 repeat protein [G 98.2 7.9E-06 1.7E-10 99.1 11.9 96 442-550 79-185 (476)
114 KOG0305 Anaphase promoting com 98.2 6.2E-06 1.3E-10 103.6 10.9 138 443-606 259-397 (484)
115 KOG1009 Chromatin assembly com 98.2 1.1E-05 2.3E-10 96.6 12.0 131 455-606 27-177 (434)
116 KOG0269 WD40 repeat-containing 98.2 7.9E-06 1.7E-10 103.7 11.1 111 438-567 127-242 (839)
117 KOG0307 Vesicle coat complex C 98.1 5.7E-05 1.2E-09 100.0 18.4 108 455-573 81-190 (1049)
118 KOG1407 WD40 repeat protein [F 98.1 9.5E-05 2.1E-09 84.5 17.2 198 433-729 53-294 (313)
119 KOG0296 Angio-associated migra 98.1 2.3E-05 5E-10 92.7 12.8 123 443-592 105-229 (399)
120 KOG0301 Phospholipase A2-activ 98.1 0.0001 2.2E-09 93.2 18.8 135 438-606 51-189 (745)
121 KOG2394 WD40 protein DMR-N9 [G 98.1 7E-06 1.5E-10 100.6 8.1 93 444-549 290-384 (636)
122 KOG0642 Cell-cycle nuclear pro 98.1 7.3E-06 1.6E-10 101.2 8.3 132 442-593 292-435 (577)
123 KOG0313 Microtubule binding pr 98.1 2E-05 4.3E-10 93.6 11.4 122 455-604 272-397 (423)
124 KOG2111 Uncharacterized conser 98.0 3.3E-05 7.1E-10 90.3 12.7 105 447-566 139-248 (346)
125 KOG1446 Histone H3 (Lys4) meth 98.0 0.00049 1.1E-08 80.9 22.1 99 495-607 13-111 (311)
126 KOG0278 Serine/threonine kinas 98.0 3E-05 6.5E-10 87.7 11.7 70 499-582 227-296 (334)
127 KOG0641 WD40 repeat protein [G 98.0 4.5E-05 9.7E-10 84.8 12.6 109 441-564 180-293 (350)
128 KOG1310 WD40 repeat protein [G 98.0 1.2E-05 2.7E-10 98.3 8.1 80 492-575 46-125 (758)
129 KOG0308 Conserved WD40 repeat- 98.0 3.8E-05 8.2E-10 96.1 12.4 119 441-568 114-236 (735)
130 KOG0267 Microtubule severing p 98.0 1.2E-05 2.5E-10 101.5 7.7 113 446-585 114-228 (825)
131 KOG2048 WD40 repeat protein [G 98.0 0.00013 2.7E-09 92.2 16.2 138 444-606 25-164 (691)
132 KOG0293 WD40 repeat-containing 97.9 1.4E-05 3.1E-10 95.2 7.5 99 493-606 221-322 (519)
133 KOG1272 WD40-repeat-containing 97.9 1.4E-05 3E-10 96.8 7.3 107 439-565 246-354 (545)
134 KOG1009 Chromatin assembly com 97.9 0.00059 1.3E-08 82.2 20.7 155 406-574 36-196 (434)
135 KOG2096 WD40 repeat protein [G 97.9 0.00029 6.2E-09 82.3 17.3 163 432-604 74-286 (420)
136 KOG1963 WD40 repeat protein [G 97.9 5.8E-05 1.2E-09 97.7 12.7 106 447-566 208-315 (792)
137 KOG4283 Transcription-coupled 97.9 0.00011 2.4E-09 84.8 13.2 142 441-597 40-233 (397)
138 KOG0307 Vesicle coat complex C 97.9 2.1E-05 4.6E-10 103.9 8.3 146 439-606 111-263 (1049)
139 KOG0771 Prolactin regulatory e 97.9 0.00018 3.9E-09 87.0 14.7 96 443-551 143-241 (398)
140 KOG2111 Uncharacterized conser 97.8 0.00024 5.3E-09 83.3 15.0 107 405-528 148-258 (346)
141 TIGR03866 PQQ_ABC_repeats PQQ- 97.8 0.012 2.6E-07 69.6 29.9 105 445-569 31-139 (300)
142 KOG1034 Transcriptional repres 97.8 3.7E-05 7.9E-10 90.0 7.9 99 419-529 113-214 (385)
143 KOG1007 WD repeat protein TSSC 97.8 8.3E-05 1.8E-09 85.8 10.6 141 442-604 121-268 (370)
144 KOG0277 Peroxisomal targeting 97.8 7E-05 1.5E-09 85.2 9.7 96 455-567 74-170 (311)
145 KOG1034 Transcriptional repres 97.8 4.7E-05 1E-09 89.1 8.6 102 455-573 106-211 (385)
146 KOG1273 WD40 repeat protein [G 97.8 2.7E-05 5.9E-10 90.4 6.6 73 499-586 26-98 (405)
147 KOG2445 Nuclear pore complex c 97.8 0.0014 3E-08 76.8 20.1 72 493-568 10-85 (361)
148 KOG2106 Uncharacterized conser 97.8 0.00013 2.8E-09 89.2 12.3 110 440-566 402-514 (626)
149 KOG0288 WD40 repeat protein Ti 97.8 0.00014 3E-09 87.4 12.3 119 449-594 307-428 (459)
150 KOG2096 WD40 repeat protein [G 97.8 5.4E-05 1.2E-09 88.1 8.6 97 421-526 210-308 (420)
151 KOG1408 WD40 repeat protein [F 97.8 9.1E-05 2E-09 93.0 11.0 115 447-575 599-715 (1080)
152 KOG0268 Sof1-like rRNA process 97.8 5.9E-05 1.3E-09 89.2 9.0 116 443-566 186-337 (433)
153 KOG1188 WD40 repeat protein [G 97.8 8.7E-05 1.9E-09 87.5 10.1 106 454-574 84-195 (376)
154 KOG0277 Peroxisomal targeting 97.8 0.00021 4.6E-09 81.5 12.6 155 393-574 62-220 (311)
155 KOG0644 Uncharacterized conser 97.8 2E-05 4.4E-10 100.3 5.0 121 416-549 159-284 (1113)
156 KOG1445 Tumor-specific antigen 97.8 3.3E-05 7.1E-10 95.5 6.6 107 455-573 641-748 (1012)
157 KOG0641 WD40 repeat protein [G 97.8 0.0005 1.1E-08 76.7 15.0 145 446-603 34-190 (350)
158 KOG1036 Mitotic spindle checkp 97.8 0.0001 2.2E-09 86.0 10.0 114 445-564 136-294 (323)
159 KOG0771 Prolactin regulatory e 97.8 0.00029 6.2E-09 85.3 14.0 147 416-574 164-355 (398)
160 KOG1587 Cytoplasmic dynein int 97.7 0.0013 2.8E-08 85.2 20.5 118 445-573 243-376 (555)
161 KOG0322 G-protein beta subunit 97.7 0.0001 2.2E-09 84.3 9.2 115 435-550 141-304 (323)
162 KOG1446 Histone H3 (Lys4) meth 97.7 0.00046 9.9E-09 81.1 13.9 140 437-604 7-150 (311)
163 KOG2445 Nuclear pore complex c 97.7 0.0036 7.7E-08 73.5 20.5 115 447-574 16-143 (361)
164 KOG0278 Serine/threonine kinas 97.7 8.6E-05 1.9E-09 84.1 7.3 69 451-530 233-301 (334)
165 PF08662 eIF2A: Eukaryotic tra 97.7 0.00068 1.5E-08 77.4 14.7 99 443-563 58-163 (194)
166 KOG1408 WD40 repeat protein [F 97.7 0.001 2.2E-08 84.0 17.1 103 447-566 462-570 (1080)
167 KOG1538 Uncharacterized conser 97.6 0.0012 2.7E-08 82.6 17.4 96 448-564 18-113 (1081)
168 KOG0650 WD40 repeat nucleolar 97.6 0.00013 2.8E-09 90.7 8.9 74 493-573 397-470 (733)
169 KOG0302 Ribosome Assembly prot 97.6 0.00018 3.8E-09 85.7 9.6 126 456-607 226-358 (440)
170 KOG0650 WD40 repeat nucleolar 97.6 0.00013 2.8E-09 90.7 8.7 157 429-606 551-715 (733)
171 KOG4378 Nuclear protein COP1 [ 97.6 0.0001 2.2E-09 89.7 7.0 107 448-571 83-191 (673)
172 KOG0639 Transducin-like enhanc 97.6 0.0001 2.3E-09 89.6 6.7 108 448-575 513-622 (705)
173 PF00400 WD40: WD domain, G-be 97.6 0.00011 2.4E-09 61.0 4.9 32 493-524 8-39 (39)
174 KOG1524 WD40 repeat-containing 97.5 0.0016 3.6E-08 80.2 16.3 257 455-777 76-347 (737)
175 KOG0639 Transducin-like enhanc 97.5 0.00013 2.9E-09 88.8 6.9 90 450-550 473-562 (705)
176 KOG4227 WD40 repeat protein [G 97.5 0.00028 6.1E-09 83.6 9.1 122 433-566 45-171 (609)
177 KOG0303 Actin-binding protein 97.5 0.00031 6.7E-09 84.0 9.4 121 423-551 59-185 (472)
178 KOG0649 WD40 repeat protein [G 97.5 0.00079 1.7E-08 76.4 11.7 67 457-535 129-195 (325)
179 KOG4547 WD40 repeat-containing 97.4 0.0008 1.7E-08 84.5 12.4 104 429-550 90-195 (541)
180 KOG1007 WD repeat protein TSSC 97.4 0.00054 1.2E-08 79.3 10.0 81 458-550 187-269 (370)
181 KOG1036 Mitotic spindle checkp 97.4 0.0019 4.2E-08 75.8 14.4 103 443-567 52-157 (323)
182 KOG1240 Protein kinase contain 97.4 0.0015 3.3E-08 87.1 14.9 142 425-580 1034-1187(1431)
183 KOG2055 WD40 repeat protein [G 97.4 0.00062 1.3E-08 83.0 10.4 104 452-574 313-416 (514)
184 TIGR03866 PQQ_ABC_repeats PQQ- 97.4 0.0016 3.6E-08 77.0 13.5 100 455-574 2-102 (300)
185 KOG0985 Vesicle coat protein c 97.3 0.32 6.8E-06 64.8 33.5 111 936-1061 676-790 (1666)
186 KOG0647 mRNA export protein (c 97.3 0.00049 1.1E-08 80.2 7.7 94 495-604 26-121 (347)
187 KOG1063 RNA polymerase II elon 97.3 0.00059 1.3E-08 86.4 8.9 111 447-574 528-649 (764)
188 KOG4378 Nuclear protein COP1 [ 97.3 0.00085 1.8E-08 82.0 9.4 88 449-550 215-304 (673)
189 KOG2055 WD40 repeat protein [G 97.2 0.0068 1.5E-07 74.3 16.4 147 417-582 234-381 (514)
190 KOG2066 Vacuolar assembly/sort 97.2 0.47 1E-05 62.5 33.2 99 452-572 81-186 (846)
191 KOG0300 WD40 repeat-containing 97.2 0.001 2.2E-08 77.4 8.8 146 440-601 186-362 (481)
192 KOG4328 WD40 protein [Function 97.2 0.0014 3.1E-08 79.9 10.2 115 439-567 181-301 (498)
193 KOG1538 Uncharacterized conser 97.2 0.0029 6.2E-08 79.5 12.9 119 440-561 49-198 (1081)
194 KOG4227 WD40 repeat protein [G 97.2 0.0021 4.6E-08 76.5 11.1 101 493-607 53-160 (609)
195 KOG0974 WD-repeat protein WDR6 97.2 0.0015 3.2E-08 86.4 10.6 84 454-550 145-229 (967)
196 KOG0303 Actin-binding protein 97.1 0.002 4.3E-08 77.4 10.3 118 418-550 104-227 (472)
197 KOG0270 WD40 repeat-containing 97.1 0.005 1.1E-07 75.3 13.7 151 381-574 248-403 (463)
198 KOG2394 WD40 protein DMR-N9 [G 97.0 0.0011 2.3E-08 82.2 7.0 95 496-606 290-386 (636)
199 KOG1188 WD40 repeat protein [G 97.0 0.0041 9E-08 73.9 11.5 100 439-550 111-222 (376)
200 KOG0321 WD40 repeat-containing 97.0 0.00098 2.1E-08 83.9 6.7 130 455-597 65-195 (720)
201 KOG0322 G-protein beta subunit 97.0 0.0009 2E-08 76.8 5.3 71 443-525 251-322 (323)
202 COG2319 FOG: WD40 repeat [Gene 96.9 0.014 3.1E-07 70.0 15.6 97 440-550 151-252 (466)
203 KOG1445 Tumor-specific antigen 96.9 0.0024 5.3E-08 79.7 8.6 121 429-566 660-786 (1012)
204 KOG0649 WD40 repeat protein [G 96.9 0.0054 1.2E-07 69.9 10.5 131 439-589 57-192 (325)
205 KOG1645 RING-finger-containing 96.8 0.1 2.2E-06 63.7 21.2 100 493-606 190-291 (463)
206 KOG1240 Protein kinase contain 96.8 0.0069 1.5E-07 81.2 12.5 118 456-592 1165-1282(1431)
207 KOG2106 Uncharacterized conser 96.8 0.12 2.6E-06 64.4 22.0 67 445-524 247-314 (626)
208 KOG0300 WD40 repeat-containing 96.8 0.0023 4.9E-08 74.6 7.1 124 455-606 161-324 (481)
209 KOG4328 WD40 protein [Function 96.8 0.0031 6.7E-08 77.1 8.5 94 446-550 324-431 (498)
210 KOG0290 Conserved WD40 repeat- 96.8 0.025 5.5E-07 66.1 15.3 103 455-566 114-220 (364)
211 PRK11028 6-phosphogluconolacto 96.8 0.57 1.2E-05 57.6 28.3 114 444-574 34-155 (330)
212 COG2319 FOG: WD40 repeat [Gene 96.8 0.0099 2.1E-07 71.4 12.5 98 456-570 125-224 (466)
213 KOG0642 Cell-cycle nuclear pro 96.8 0.0035 7.7E-08 78.4 8.6 90 439-530 339-430 (577)
214 KOG1517 Guanine nucleotide bin 96.7 0.0088 1.9E-07 79.0 12.3 95 447-550 1211-1315(1387)
215 KOG1334 WD40 repeat protein [G 96.7 0.0022 4.8E-08 78.8 6.4 144 448-607 285-447 (559)
216 KOG2139 WD40 repeat protein [G 96.7 0.014 3E-07 69.9 12.4 118 444-570 140-265 (445)
217 PF08662 eIF2A: Eukaryotic tra 96.7 0.019 4E-07 65.7 13.4 70 495-573 58-131 (194)
218 KOG0268 Sof1-like rRNA process 96.7 0.0012 2.6E-08 78.5 3.7 73 492-581 62-135 (433)
219 KOG2110 Uncharacterized conser 96.7 0.021 4.6E-07 68.7 13.8 102 447-567 90-195 (391)
220 KOG4547 WD40 repeat-containing 96.6 0.014 3.1E-07 73.7 12.6 122 455-604 71-192 (541)
221 KOG4640 Anaphase-promoting com 96.6 0.0042 9.1E-08 78.7 7.7 82 455-549 33-115 (665)
222 KOG0644 Uncharacterized conser 96.6 0.00088 1.9E-08 86.0 1.7 97 494-606 188-286 (1113)
223 KOG2919 Guanine nucleotide-bin 96.5 0.016 3.5E-07 68.5 11.0 121 448-580 164-288 (406)
224 PF13639 zf-RING_2: Ring finge 96.5 0.00077 1.7E-08 58.2 0.1 44 1756-1807 1-44 (44)
225 KOG2041 WD40 repeat protein [G 96.4 0.015 3.2E-07 73.9 10.7 134 443-582 13-152 (1189)
226 PF12678 zf-rbx1: RING-H2 zinc 96.4 0.0019 4.1E-08 62.2 2.4 52 1751-1807 15-73 (73)
227 KOG1524 WD40 repeat-containing 96.4 1.1 2.3E-05 56.7 25.7 133 391-550 105-238 (737)
228 PRK05137 tolB translocation pr 96.3 1.1 2.3E-05 57.7 27.1 134 410-567 121-268 (435)
229 KOG1334 WD40 repeat protein [G 96.2 0.0064 1.4E-07 74.9 5.9 105 492-606 138-242 (559)
230 KOG1523 Actin-related protein 96.1 0.038 8.2E-07 65.6 11.5 103 438-550 4-111 (361)
231 PF08596 Lgl_C: Lethal giant l 96.1 0.096 2.1E-06 66.3 15.8 154 447-605 4-201 (395)
232 KOG1310 WD40 repeat protein [G 96.1 0.016 3.5E-07 72.0 8.6 121 438-574 44-177 (758)
233 PF12861 zf-Apc11: Anaphase-pr 96.1 0.0032 7E-08 61.6 2.2 55 1753-1809 19-80 (85)
234 KOG1517 Guanine nucleotide bin 96.1 0.025 5.3E-07 75.1 10.6 103 456-574 1179-1286(1387)
235 PF02239 Cytochrom_D1: Cytochr 96.0 0.05 1.1E-06 68.3 13.1 105 453-575 47-158 (369)
236 KOG0321 WD40 repeat-containing 95.9 0.034 7.3E-07 70.7 10.2 139 416-567 238-384 (720)
237 PRK05137 tolB translocation pr 95.8 0.1 2.2E-06 67.1 14.8 102 446-567 203-312 (435)
238 PRK04922 tolB translocation pr 95.8 0.09 2E-06 67.4 14.1 98 451-568 212-315 (433)
239 PRK11028 6-phosphogluconolacto 95.7 0.1 2.2E-06 64.2 13.6 117 444-574 79-204 (330)
240 KOG0290 Conserved WD40 repeat- 95.7 0.041 8.8E-07 64.5 9.2 142 442-604 147-297 (364)
241 KOG1587 Cytoplasmic dynein int 95.7 0.049 1.1E-06 71.0 11.1 123 443-575 346-472 (555)
242 PF11768 DUF3312: Protein of u 95.5 0.067 1.4E-06 68.4 11.1 73 444-530 259-333 (545)
243 PRK01742 tolB translocation pr 95.5 0.079 1.7E-06 67.9 11.9 99 450-568 211-315 (429)
244 smart00320 WD40 WD40 repeats. 95.5 0.02 4.3E-07 44.4 4.2 31 494-524 10-40 (40)
245 PRK01742 tolB translocation pr 95.4 0.074 1.6E-06 68.1 11.4 84 463-568 183-271 (429)
246 KOG1063 RNA polymerase II elon 95.4 0.085 1.8E-06 67.8 11.2 126 441-575 569-699 (764)
247 KOG3881 Uncharacterized conser 95.3 0.039 8.4E-07 67.0 7.7 99 439-550 244-342 (412)
248 KOG2919 Guanine nucleotide-bin 95.3 0.079 1.7E-06 62.9 10.0 114 443-573 206-325 (406)
249 smart00299 CLH Clathrin heavy 95.1 0.14 3E-06 55.1 10.7 97 962-1064 13-109 (140)
250 PRK03629 tolB translocation pr 95.1 0.28 6.1E-06 63.0 15.3 98 450-567 206-309 (429)
251 KOG3914 WD repeat protein WDR4 95.1 0.035 7.6E-07 67.6 6.5 75 448-534 155-231 (390)
252 TIGR02800 propeller_TolB tol-p 95.0 0.25 5.4E-06 62.6 14.2 99 450-568 197-301 (417)
253 KOG2695 WD40 repeat protein [G 95.0 0.061 1.3E-06 64.3 7.8 101 454-566 264-368 (425)
254 KOG1912 WD40 repeat protein [G 94.9 0.18 3.8E-06 65.5 12.2 139 455-610 27-191 (1062)
255 KOG1963 WD40 repeat protein [G 94.9 0.31 6.8E-06 64.5 14.8 135 447-606 163-302 (792)
256 KOG4628 Predicted E3 ubiquitin 94.9 0.045 9.7E-07 66.8 6.7 50 1756-1812 230-279 (348)
257 KOG1734 Predicted RING-contain 94.7 0.014 3E-07 67.2 1.7 85 1727-1814 188-284 (328)
258 TIGR02800 propeller_TolB tol-p 94.7 0.24 5.2E-06 62.7 12.9 73 495-574 188-265 (417)
259 PF11768 DUF3312: Protein of u 94.6 0.1 2.2E-06 66.8 9.1 67 495-570 258-324 (545)
260 KOG4714 Nucleoporin [Nuclear s 94.6 0.083 1.8E-06 61.3 7.5 74 497-575 180-254 (319)
261 PF10366 Vps39_1: Vacuolar sor 94.4 0.11 2.5E-06 53.9 7.4 64 1473-1540 2-65 (108)
262 PHA02929 N1R/p28-like protein; 94.4 0.082 1.8E-06 62.0 6.9 51 1754-1809 173-225 (238)
263 KOG3914 WD repeat protein WDR4 94.3 0.09 2E-06 64.2 7.2 57 494-550 149-205 (390)
264 PRK02889 tolB translocation pr 94.3 0.28 6.2E-06 62.8 12.3 100 449-568 202-307 (427)
265 KOG2139 WD40 repeat protein [G 94.3 0.37 8E-06 58.3 12.0 110 447-575 198-311 (445)
266 KOG2321 WD40 repeat protein [G 94.3 0.27 5.8E-06 62.3 11.3 101 455-574 147-257 (703)
267 KOG1272 WD40-repeat-containing 94.2 0.06 1.3E-06 66.4 5.5 100 456-583 223-323 (545)
268 PRK00178 tolB translocation pr 94.2 0.55 1.2E-05 60.1 14.6 99 450-568 206-310 (430)
269 PRK04792 tolB translocation pr 93.9 0.61 1.3E-05 60.3 14.2 100 449-568 224-329 (448)
270 KOG0280 Uncharacterized conser 93.9 0.19 4.1E-06 59.4 8.5 85 454-550 178-264 (339)
271 PF00637 Clathrin: Region in C 93.8 0.045 9.7E-07 59.0 3.2 88 966-1058 17-104 (143)
272 KOG0974 WD-repeat protein WDR6 93.8 0.32 6.9E-06 65.5 11.3 108 440-567 171-281 (967)
273 COG5243 HRD1 HRD ubiquitin lig 93.8 0.24 5.2E-06 59.6 9.2 73 1752-1829 284-365 (491)
274 KOG1523 Actin-related protein 93.7 0.48 1E-05 56.7 11.5 72 496-572 10-84 (361)
275 cd00162 RING RING-finger (Real 93.5 0.031 6.8E-07 47.3 1.1 43 1757-1808 1-43 (45)
276 PRK04922 tolB translocation pr 93.5 0.64 1.4E-05 59.7 13.3 66 495-567 202-270 (433)
277 PF08553 VID27: VID27 cytoplas 93.3 0.19 4.2E-06 67.8 8.4 97 416-526 548-647 (794)
278 PF14783 BBS2_Mid: Ciliary BBS 93.3 1.1 2.4E-05 46.7 11.9 93 455-569 16-108 (111)
279 KOG3881 Uncharacterized conser 93.2 0.42 9.1E-06 58.4 10.1 102 455-573 217-318 (412)
280 PRK02889 tolB translocation pr 93.2 0.57 1.2E-05 60.1 12.2 66 495-567 194-262 (427)
281 PF13923 zf-C3HC4_2: Zinc fing 93.2 0.026 5.6E-07 47.6 0.0 39 1758-1806 1-39 (39)
282 KOG3621 WD40 repeat-containing 93.1 0.3 6.6E-06 63.4 9.3 99 443-548 75-179 (726)
283 KOG4497 Uncharacterized conser 93.1 0.49 1.1E-05 56.6 10.1 88 457-563 64-152 (447)
284 PF14634 zf-RING_5: zinc-RING 93.1 0.054 1.2E-06 47.0 1.9 44 1757-1808 1-44 (44)
285 PRK03629 tolB translocation pr 93.0 1.1 2.5E-05 57.5 14.6 66 495-567 197-265 (429)
286 PRK00178 tolB translocation pr 92.9 1.1 2.4E-05 57.3 14.3 120 426-567 137-265 (430)
287 PRK04792 tolB translocation pr 92.6 0.85 1.8E-05 59.0 12.6 126 428-573 159-292 (448)
288 PRK01029 tolB translocation pr 92.3 1.4 3.1E-05 56.6 13.9 103 449-567 287-393 (428)
289 PF00097 zf-C3HC4: Zinc finger 92.1 0.037 8.1E-07 46.9 -0.4 41 1758-1806 1-41 (41)
290 PF00400 WD40: WD domain, G-be 92.0 0.27 5.8E-06 40.6 4.6 32 439-470 6-39 (39)
291 KOG1493 Anaphase-promoting com 91.9 0.023 5.1E-07 53.8 -1.9 57 1751-1809 16-79 (84)
292 KOG4714 Nucleoporin [Nuclear s 91.9 0.13 2.8E-06 59.8 3.5 98 416-527 154-255 (319)
293 PF04762 IKI3: IKI3 family; I 91.8 18 0.0004 51.0 24.7 115 446-575 260-379 (928)
294 PF08553 VID27: VID27 cytoplas 91.8 0.97 2.1E-05 61.3 11.9 94 457-566 545-640 (794)
295 KOG1409 Uncharacterized conser 91.7 0.72 1.6E-05 55.7 9.4 103 456-574 167-269 (404)
296 PF02239 Cytochrom_D1: Cytochr 91.7 1 2.2E-05 56.8 11.5 97 458-573 10-106 (369)
297 PF12894 Apc4_WD40: Anaphase-p 91.7 0.35 7.7E-06 42.8 5.2 35 495-530 10-44 (47)
298 KOG1064 RAVE (regulator of V-A 90.9 0.96 2.1E-05 64.0 10.5 116 442-574 2206-2365(2439)
299 COG4946 Uncharacterized protei 90.9 1.7 3.8E-05 54.2 11.7 117 410-550 335-454 (668)
300 PF14835 zf-RING_6: zf-RING of 90.9 0.13 2.8E-06 47.9 1.8 43 1756-1810 8-50 (65)
301 KOG4532 WD40-like repeat conta 90.9 1.8 3.9E-05 50.9 11.2 92 451-551 167-262 (344)
302 KOG2114 Vacuolar assembly/sort 90.8 5.2 0.00011 53.6 16.4 65 1475-1542 436-504 (933)
303 KOG2041 WD40 repeat protein [G 90.7 0.98 2.1E-05 58.4 9.6 97 495-605 13-124 (1189)
304 KOG2930 SCF ubiquitin ligase, 90.7 0.072 1.6E-06 53.4 -0.1 60 1750-1814 41-111 (114)
305 PF15227 zf-C3HC4_4: zinc fing 90.6 0.11 2.4E-06 44.8 1.0 42 1758-1806 1-42 (42)
306 COG5540 RING-finger-containing 90.5 0.16 3.4E-06 59.8 2.5 61 1736-1808 309-369 (374)
307 KOG3617 WD40 and TPR repeat-co 90.5 0.48 1E-05 62.0 6.8 114 440-574 11-130 (1416)
308 COG5194 APC11 Component of SCF 90.3 0.15 3.2E-06 49.0 1.6 60 1751-1815 16-85 (88)
309 PF04762 IKI3: IKI3 family; I 90.0 50 0.0011 46.9 26.2 71 445-524 76-148 (928)
310 smart00184 RING Ring finger. E 89.6 0.13 2.8E-06 41.9 0.6 39 1758-1806 1-39 (39)
311 KOG0280 Uncharacterized conser 89.6 3.3 7.2E-05 49.4 12.1 129 453-606 132-263 (339)
312 PF12816 Vps8: Golgi CORVET co 89.5 1.2 2.6E-05 51.2 8.6 101 1240-1355 7-127 (196)
313 KOG0827 Predicted E3 ubiquitin 89.5 0.11 2.4E-06 62.8 0.2 50 1753-1807 2-52 (465)
314 PF03178 CPSF_A: CPSF A subuni 89.5 2.6 5.6E-05 51.9 12.1 114 443-575 87-202 (321)
315 PRK01029 tolB translocation pr 89.4 3.2 6.9E-05 53.5 13.2 65 497-567 281-349 (428)
316 PF15492 Nbas_N: Neuroblastoma 89.1 4.5 9.8E-05 48.3 12.8 92 449-549 4-101 (282)
317 KOG4532 WD40-like repeat conta 88.4 3.4 7.4E-05 48.7 10.9 103 441-550 202-313 (344)
318 KOG1064 RAVE (regulator of V-A 87.9 0.34 7.4E-06 68.1 3.1 76 441-538 2333-2410(2439)
319 KOG4190 Uncharacterized conser 87.7 0.6 1.3E-05 58.4 4.7 129 440-586 731-862 (1034)
320 PF12341 DUF3639: Protein of u 87.4 0.77 1.7E-05 35.9 3.4 25 446-470 3-27 (27)
321 KOG1832 HIV-1 Vpr-binding prot 87.4 0.73 1.6E-05 60.7 5.4 95 438-549 1095-1194(1516)
322 KOG1832 HIV-1 Vpr-binding prot 87.2 0.92 2E-05 59.9 6.1 57 493-550 1098-1154(1516)
323 PLN03208 E3 ubiquitin-protein 87.1 0.27 5.8E-06 55.6 1.3 49 1755-1810 18-78 (193)
324 PF13920 zf-C3HC4_3: Zinc fing 87.0 0.28 6E-06 43.7 1.0 43 1756-1809 3-46 (50)
325 PF08596 Lgl_C: Lethal giant l 86.9 1.8 3.8E-05 55.1 8.5 76 442-526 84-173 (395)
326 TIGR03300 assembly_YfgL outer 86.4 5.5 0.00012 50.0 12.5 82 446-541 271-352 (377)
327 KOG2695 WD40 repeat protein [G 86.3 2.2 4.7E-05 51.8 8.1 94 454-569 225-323 (425)
328 KOG2395 Protein involved in va 86.2 1.4 3E-05 55.9 6.8 98 416-526 400-500 (644)
329 COG4946 Uncharacterized protei 85.9 5.7 0.00012 49.9 11.5 82 441-534 398-485 (668)
330 TIGR00599 rad18 DNA repair pro 85.8 0.28 6E-06 61.6 0.6 45 1755-1810 26-70 (397)
331 KOG1354 Serine/threonine prote 85.6 1.6 3.6E-05 52.7 6.6 97 427-538 208-313 (433)
332 TIGR02658 TTQ_MADH_Hv methylam 85.4 8.1 0.00018 48.4 13.0 77 450-535 53-145 (352)
333 KOG1941 Acetylcholine receptor 85.3 0.74 1.6E-05 55.9 3.7 49 1755-1808 365-413 (518)
334 KOG4497 Uncharacterized conser 84.9 1.8 3.9E-05 52.0 6.5 111 444-573 10-122 (447)
335 KOG4190 Uncharacterized conser 84.8 2 4.4E-05 54.0 7.1 106 422-535 806-915 (1034)
336 PF03178 CPSF_A: CPSF A subuni 84.8 9.5 0.00021 47.0 13.2 115 418-545 107-230 (321)
337 KOG2444 WD40 repeat protein [G 84.7 2.4 5.3E-05 49.2 7.3 103 454-582 70-176 (238)
338 COG2706 3-carboxymuconate cycl 84.6 20 0.00042 44.4 15.1 110 433-550 28-155 (346)
339 PHA02926 zinc finger-like prot 84.4 0.44 9.4E-06 54.6 1.2 58 1753-1810 168-229 (242)
340 KOG0828 Predicted E3 ubiquitin 84.3 0.13 2.8E-06 63.7 -3.1 57 1748-1808 564-631 (636)
341 PF11715 Nup160: Nucleoporin N 83.9 4 8.7E-05 54.1 10.1 86 448-535 149-257 (547)
342 COG5432 RAD18 RING-finger-cont 83.8 0.38 8.2E-06 56.2 0.4 44 1755-1809 25-68 (391)
343 smart00504 Ubox Modified RING 82.5 0.59 1.3E-05 43.2 1.1 43 1756-1809 2-44 (63)
344 KOG0802 E3 ubiquitin ligase [P 82.4 0.36 7.7E-06 63.9 -0.6 54 1749-1808 285-338 (543)
345 KOG0320 Predicted E3 ubiquitin 82.4 0.37 8E-06 53.3 -0.3 44 1756-1808 132-175 (187)
346 KOG0978 E3 ubiquitin ligase in 82.0 1 2.2E-05 59.8 3.3 43 1756-1808 644-686 (698)
347 PLN02919 haloacid dehalogenase 81.8 21 0.00045 51.3 16.2 81 444-532 739-839 (1057)
348 PF14783 BBS2_Mid: Ciliary BBS 81.4 8.1 0.00018 40.5 8.9 72 499-582 2-77 (111)
349 TIGR02658 TTQ_MADH_Hv methylam 80.7 25 0.00054 44.3 14.5 110 453-573 205-328 (352)
350 KOG0317 Predicted E3 ubiquitin 80.6 0.66 1.4E-05 55.0 0.8 52 1751-1813 235-286 (293)
351 KOG1409 Uncharacterized conser 80.5 3.2 7E-05 50.4 6.4 101 412-529 171-273 (404)
352 PRK11138 outer membrane biogen 80.4 15 0.00032 46.7 12.9 79 443-534 283-361 (394)
353 PF10313 DUF2415: Uncharacteri 79.7 4 8.7E-05 35.6 5.0 32 497-528 1-35 (43)
354 PF08450 SGL: SMP-30/Gluconola 79.7 26 0.00057 41.2 13.9 110 443-563 132-244 (246)
355 PLN02919 haloacid dehalogenase 79.3 8 0.00017 55.3 10.9 78 444-530 803-892 (1057)
356 PF00780 CNH: CNH domain; Int 78.7 1.5E+02 0.0033 35.3 22.2 57 720-778 106-165 (275)
357 PF10282 Lactonase: Lactonase, 78.7 25 0.00054 43.9 14.0 119 442-573 34-172 (345)
358 KOG1645 RING-finger-containing 78.5 9.6 0.00021 47.4 9.6 91 447-550 196-292 (463)
359 PRK04043 tolB translocation pr 78.0 17 0.00037 46.8 12.4 99 450-568 195-300 (419)
360 KOG1920 IkappaB kinase complex 77.9 1.4E+02 0.0031 42.3 20.9 93 416-523 40-136 (1265)
361 KOG0804 Cytoplasmic Zn-finger 77.7 1.1 2.3E-05 55.9 1.4 33 1755-1789 175-207 (493)
362 PF10282 Lactonase: Lactonase, 77.6 66 0.0014 40.2 17.2 145 416-573 60-220 (345)
363 KOG2395 Protein involved in va 77.3 10 0.00022 48.6 9.6 94 458-566 398-493 (644)
364 PF08728 CRT10: CRT10; InterP 76.3 9.4 0.0002 51.5 9.5 120 455-574 115-245 (717)
365 COG5170 CDC55 Serine/threonine 76.2 4.6 0.0001 48.2 5.9 100 424-535 213-319 (460)
366 TIGR00570 cdk7 CDK-activating 76.2 1.3 2.9E-05 53.7 1.6 49 1755-1808 3-51 (309)
367 PF14655 RAB3GAP2_N: Rab3 GTPa 76.1 8.9 0.00019 49.1 8.9 96 449-549 8-118 (415)
368 KOG1912 WD40 repeat protein [G 75.8 13 0.00027 49.5 10.0 101 455-574 80-185 (1062)
369 KOG1920 IkappaB kinase complex 75.2 1.8E+02 0.0039 41.4 20.8 53 496-550 68-120 (1265)
370 KOG0309 Conserved WD40 repeat- 74.1 8.9 0.00019 50.5 8.1 121 455-599 82-204 (1081)
371 KOG2063 Vacuolar assembly/sort 74.0 11 0.00024 51.9 9.5 66 1472-1541 465-531 (877)
372 smart00249 PHD PHD zinc finger 73.0 2.9 6.4E-05 35.6 2.6 47 1757-1806 1-47 (47)
373 KOG3617 WD40 and TPR repeat-co 72.5 6.1 0.00013 52.5 6.2 108 449-569 64-180 (1416)
374 PF04841 Vps16_N: Vps16, N-ter 72.4 2.5E+02 0.0053 36.3 20.7 38 742-780 250-289 (410)
375 PF10366 Vps39_1: Vacuolar sor 70.7 13 0.00027 39.0 7.0 52 1287-1340 16-67 (108)
376 KOG0309 Conserved WD40 repeat- 70.6 8.1 0.00018 50.8 6.6 136 420-574 83-231 (1081)
377 KOG0287 Postreplication repair 70.3 1.2 2.6E-05 53.4 -0.6 44 1755-1809 23-66 (442)
378 KOG1813 Predicted E3 ubiquitin 70.0 2 4.3E-05 51.2 1.1 45 1755-1810 241-285 (313)
379 COG5152 Uncharacterized conser 69.5 1.1 2.4E-05 50.0 -1.1 43 1756-1809 197-239 (259)
380 smart00320 WD40 WD40 repeats. 69.3 7.4 0.00016 29.4 4.0 29 442-470 10-40 (40)
381 PF15492 Nbas_N: Neuroblastoma 68.9 6.9 0.00015 46.9 5.2 40 495-534 228-267 (282)
382 PRK04043 tolB translocation pr 68.3 46 0.001 43.0 12.9 84 450-550 240-329 (419)
383 KOG3970 Predicted E3 ubiquitin 68.1 2.8 6.2E-05 47.7 1.8 54 1748-1808 46-102 (299)
384 TIGR03300 assembly_YfgL outer 67.7 53 0.0011 41.3 13.2 65 452-532 239-303 (377)
385 PF13360 PQQ_2: PQQ-like domai 67.3 59 0.0013 37.5 12.6 77 444-534 25-102 (238)
386 KOG1916 Nuclear protein, conta 67.1 5.8 0.00013 53.2 4.4 67 450-529 191-269 (1283)
387 KOG2879 Predicted E3 ubiquitin 66.3 3.3 7.1E-05 49.0 1.8 50 1754-1811 238-287 (298)
388 KOG1354 Serine/threonine prote 66.2 12 0.00025 45.8 6.3 76 496-583 25-116 (433)
389 KOG1002 Nucleotide excision re 65.7 3 6.4E-05 52.6 1.4 84 1714-1808 487-583 (791)
390 KOG0823 Predicted E3 ubiquitin 64.5 3.2 7E-05 48.1 1.4 47 1755-1809 47-93 (230)
391 KOG2932 E3 ubiquitin ligase in 63.0 3.2 6.8E-05 49.5 0.9 46 1752-1809 87-132 (389)
392 PF07569 Hira: TUP1-like enhan 61.6 29 0.00062 40.8 8.5 75 497-581 13-100 (219)
393 KOG0985 Vesicle coat protein c 61.4 6.6E+02 0.014 35.8 20.9 42 504-550 72-115 (1666)
394 KOG0956 PHD finger protein AF1 61.0 11 0.00025 49.3 5.3 140 1777-1946 143-294 (900)
395 PF04053 Coatomer_WDAD: Coatom 61.0 41 0.0009 43.7 10.5 97 444-566 68-166 (443)
396 PF11793 FANCL_C: FANCL C-term 60.9 2.5 5.4E-05 40.7 -0.3 54 1755-1809 2-64 (70)
397 KOG2315 Predicted translation 60.6 50 0.0011 43.0 10.7 62 495-563 310-374 (566)
398 KOG3630 Nuclear pore complex, 60.4 16 0.00036 50.5 6.8 90 456-563 170-262 (1405)
399 PF13445 zf-RING_UBOX: RING-ty 60.3 2.7 5.8E-05 36.7 -0.2 29 1758-1789 1-29 (43)
400 PF07569 Hira: TUP1-like enhan 59.9 34 0.00073 40.3 8.7 73 447-529 15-98 (219)
401 COG5222 Uncharacterized conser 58.0 3.4 7.4E-05 48.7 0.1 47 1755-1810 274-320 (427)
402 KOG1275 PAB-dependent poly(A) 57.1 23 0.0005 48.1 7.2 92 443-550 176-276 (1118)
403 PF13901 DUF4206: Domain of un 56.4 27 0.00059 40.6 7.0 45 1756-1810 153-199 (202)
404 KOG1898 Splicing factor 3b, su 56.1 1.2E+02 0.0026 42.5 13.4 117 447-572 542-668 (1205)
405 KOG1275 PAB-dependent poly(A) 55.5 37 0.00079 46.4 8.6 82 453-549 146-227 (1118)
406 PF07227 DUF1423: Protein of u 55.5 58 0.0013 41.7 10.0 69 1778-1846 151-241 (446)
407 PF00628 PHD: PHD-finger; Int 55.4 2.9 6.2E-05 37.2 -0.8 49 1757-1808 1-50 (51)
408 COG5574 PEX10 RING-finger-cont 54.9 4.1 9E-05 48.0 0.1 48 1754-1810 214-261 (271)
409 PF13360 PQQ_2: PQQ-like domai 54.2 1.1E+02 0.0024 35.2 11.9 75 451-535 73-149 (238)
410 KOG4739 Uncharacterized protei 53.6 8.2 0.00018 45.3 2.2 63 1757-1834 5-68 (233)
411 PF00780 CNH: CNH domain; Int 52.7 4.7E+02 0.01 31.2 25.4 68 449-531 2-69 (275)
412 KOG0882 Cyclophilin-related pe 52.1 22 0.00048 44.9 5.5 114 447-575 12-174 (558)
413 KOG4499 Ca2+-binding protein R 51.7 47 0.001 39.1 7.6 48 502-550 217-264 (310)
414 KOG1897 Damage-specific DNA bi 51.7 9.3E+02 0.02 34.3 25.8 147 407-574 501-660 (1096)
415 PF02897 Peptidase_S9_N: Proly 51.2 43 0.00093 42.7 8.4 52 497-550 124-180 (414)
416 COG5167 VID27 Protein involved 50.9 31 0.00066 44.3 6.5 97 416-526 533-632 (776)
417 KOG2314 Translation initiation 50.2 43 0.00094 43.4 7.7 87 450-551 218-317 (698)
418 PF12894 Apc4_WD40: Anaphase-p 50.0 31 0.00068 30.7 4.7 26 446-471 13-40 (47)
419 smart00132 LIM Zinc-binding do 50.0 16 0.00034 30.0 2.8 28 1757-1788 1-28 (39)
420 PF08450 SGL: SMP-30/Gluconola 49.5 3.5E+02 0.0076 31.8 15.1 110 447-572 42-161 (246)
421 COG5354 Uncharacterized protei 49.3 44 0.00095 43.1 7.5 89 448-552 38-144 (561)
422 PF04641 Rtf2: Rtf2 RING-finge 47.7 9.8 0.00021 45.8 1.7 51 1752-1810 110-160 (260)
423 KOG2164 Predicted E3 ubiquitin 47.7 7.6 0.00017 49.7 0.8 47 1755-1808 186-233 (513)
424 COG2706 3-carboxymuconate cycl 46.9 1.4E+02 0.0029 37.4 11.0 99 457-571 5-115 (346)
425 PF11789 zf-Nse: Zinc-finger o 46.5 7.9 0.00017 35.8 0.5 47 1753-1807 9-57 (57)
426 COG5170 CDC55 Serine/threonine 46.4 33 0.00071 41.5 5.6 77 495-583 25-117 (460)
427 KOG1829 Uncharacterized conser 46.0 11 0.00024 49.7 1.8 49 1756-1812 512-562 (580)
428 PF04841 Vps16_N: Vps16, N-ter 45.5 88 0.0019 40.3 9.9 55 496-550 216-270 (410)
429 COG5354 Uncharacterized protei 43.8 1.9E+02 0.0042 37.6 11.8 52 495-550 31-82 (561)
430 PF14446 Prok-RING_1: Prokaryo 43.6 15 0.00033 33.6 1.8 34 1754-1789 4-37 (54)
431 KOG3799 Rab3 effector RIM1 and 43.3 54 0.0012 35.1 5.9 58 1754-1821 64-128 (169)
432 KOG2003 TPR repeat-containing 43.1 3.5E+02 0.0075 34.7 13.5 25 1314-1338 523-550 (840)
433 KOG1428 Inhibitor of type V ad 42.2 8.5 0.00018 53.4 0.1 38 1773-1812 3501-3545(3738)
434 KOG2444 WD40 repeat protein [G 41.7 68 0.0015 37.8 7.0 97 413-534 75-174 (238)
435 PF06977 SdiA-regulated: SdiA- 40.8 1.4E+02 0.0031 35.8 10.0 74 494-574 19-93 (248)
436 PF00412 LIM: LIM domain; Int 38.8 23 0.0005 32.0 2.3 36 1758-1810 1-36 (58)
437 PF07433 DUF1513: Protein of u 38.7 1.2E+02 0.0027 37.4 9.0 53 495-550 215-268 (305)
438 KOG2315 Predicted translation 38.1 1E+02 0.0022 40.3 8.4 92 495-604 269-364 (566)
439 PF12768 Rax2: Cortical protei 35.9 2E+02 0.0043 35.4 10.2 77 462-551 14-100 (281)
440 COG3391 Uncharacterized conser 35.6 3.9E+02 0.0085 34.1 13.4 111 445-575 74-190 (381)
441 KOG2177 Predicted E3 ubiquitin 35.5 12 0.00027 44.5 -0.0 42 1755-1807 13-54 (386)
442 KOG4159 Predicted E3 ubiquitin 34.5 17 0.00038 46.1 1.1 49 1751-1810 80-128 (398)
443 PF02318 FYVE_2: FYVE-type zin 34.1 86 0.0019 33.3 6.0 52 1754-1810 53-104 (118)
444 KOG3842 Adaptor protein Pellin 34.0 24 0.00052 42.4 2.0 66 1757-1826 292-370 (429)
445 PF14870 PSII_BNR: Photosynthe 33.8 4.8E+02 0.01 32.4 13.1 92 445-550 104-197 (302)
446 PF04564 U-box: U-box domain; 33.7 17 0.00038 35.1 0.7 46 1753-1808 2-47 (73)
447 PF15390 DUF4613: Domain of un 33.6 1.4E+03 0.03 31.1 21.4 64 455-529 125-189 (671)
448 PF12234 Rav1p_C: RAVE protein 33.6 4E+02 0.0088 36.3 13.2 109 440-566 25-149 (631)
449 KOG1008 Uncharacterized conser 33.3 20 0.00043 47.1 1.2 62 457-528 73-139 (783)
450 PF14781 BBS2_N: Ciliary BBSom 33.3 2.8E+02 0.0062 30.4 9.6 115 457-581 13-132 (136)
451 PF06433 Me-amine-dh_H: Methyl 32.8 1.1E+02 0.0024 38.4 7.4 39 497-535 289-329 (342)
452 TIGR02276 beta_rpt_yvtn 40-res 32.8 1.3E+02 0.0028 25.1 5.8 32 506-537 1-33 (42)
453 COG5141 PHD zinc finger-contai 32.5 39 0.00084 43.0 3.5 69 1723-1791 158-228 (669)
454 KOG0882 Cyclophilin-related pe 32.4 2.5E+02 0.0055 36.1 10.2 104 443-548 143-262 (558)
455 PF14761 HPS3_N: Hermansky-Pud 32.3 93 0.002 36.5 6.3 60 446-516 19-79 (215)
456 KOG1897 Damage-specific DNA bi 32.2 3.2E+02 0.007 38.4 11.9 131 419-574 808-941 (1096)
457 PRK11138 outer membrane biogen 30.4 4.5E+02 0.0097 33.4 12.7 63 453-531 255-317 (394)
458 cd08789 CARD_IPS-1_RIG-I Caspa 30.4 54 0.0012 32.8 3.5 65 1479-1543 10-74 (84)
459 COG5236 Uncharacterized conser 29.8 20 0.00042 43.6 0.4 48 1755-1812 61-109 (493)
460 PF02897 Peptidase_S9_N: Proly 28.2 3.1E+02 0.0068 34.9 10.9 98 451-566 132-248 (414)
461 KOG4649 PQQ (pyrrolo-quinoline 28.2 4.9E+02 0.011 31.5 11.0 69 454-534 63-131 (354)
462 KOG2280 Vacuolar assembly/sort 27.9 1.3E+03 0.028 32.1 15.9 132 416-575 19-155 (829)
463 PF10395 Utp8: Utp8 family; I 27.7 6.1E+02 0.013 34.8 13.3 55 496-550 129-185 (670)
464 KOG1940 Zn-finger protein [Gen 27.6 20 0.00042 43.4 -0.1 45 1757-1808 160-204 (276)
465 KOG1785 Tyrosine kinase negati 27.4 65 0.0014 40.1 4.1 45 1756-1810 370-415 (563)
466 PF07433 DUF1513: Protein of u 27.4 1.1E+02 0.0025 37.7 6.2 54 503-562 57-116 (305)
467 COG5167 VID27 Protein involved 26.9 1.6E+02 0.0036 38.1 7.5 51 499-550 560-614 (776)
468 PF07719 TPR_2: Tetratricopept 26.5 95 0.0021 24.4 3.8 25 1313-1337 2-26 (34)
469 KOG4577 Transcription factor L 26.5 16 0.00036 43.2 -1.0 54 1755-1829 92-147 (383)
470 KOG4445 Uncharacterized conser 26.0 57 0.0012 39.4 3.2 34 1753-1789 113-146 (368)
471 PF12234 Rav1p_C: RAVE protein 25.6 8.7E+02 0.019 33.3 14.2 54 496-549 29-82 (631)
472 PF13176 TPR_7: Tetratricopept 25.6 90 0.0019 25.7 3.5 23 1315-1337 2-24 (36)
473 KOG1701 Focal adhesion adaptor 25.4 71 0.0015 40.5 4.0 49 1741-1789 346-429 (468)
474 PF10214 Rrn6: RNA polymerase 25.2 5.1E+02 0.011 36.4 12.7 30 496-525 145-175 (765)
475 COG5219 Uncharacterized conser 25.2 15 0.00033 49.5 -1.6 50 1756-1808 1470-1520(1525)
476 PF00930 DPPIV_N: Dipeptidyl p 24.8 1.8E+02 0.0039 36.5 7.6 87 463-567 22-124 (353)
477 KOG4323 Polycomb-like PHD Zn-f 24.4 38 0.00081 43.7 1.5 57 1755-1813 168-228 (464)
478 PLN02189 cellulose synthase 24.1 69 0.0015 45.1 3.9 61 1754-1818 33-94 (1040)
479 smart00744 RINGv The RING-vari 24.0 36 0.00078 30.6 0.9 44 1757-1807 1-49 (49)
480 PLN02436 cellulose synthase A 23.9 71 0.0015 45.1 4.0 60 1754-1817 35-95 (1094)
481 PF14447 Prok-RING_4: Prokaryo 23.7 50 0.0011 30.5 1.7 41 1756-1809 8-48 (55)
482 PRK14873 primosome assembly pr 23.4 66 0.0014 44.0 3.6 54 1746-1812 375-434 (665)
483 COG3386 Gluconolactonase [Carb 23.3 7.8E+02 0.017 30.7 12.5 131 421-568 144-279 (307)
484 PRK02888 nitrous-oxide reducta 23.2 5.5E+02 0.012 35.0 11.6 98 453-566 287-397 (635)
485 PLN03218 maturation of RBCL 1; 22.7 2.2E+03 0.048 31.6 18.3 81 958-1048 651-731 (1060)
486 KOG0311 Predicted E3 ubiquitin 22.6 8.6 0.00019 47.1 -4.3 49 1755-1812 43-91 (381)
487 COG1579 Zn-ribbon protein, pos 22.3 45 0.00098 39.7 1.5 56 1732-1808 172-229 (239)
488 PLN02638 cellulose synthase A 22.1 76 0.0016 44.9 3.7 61 1754-1818 16-77 (1079)
489 KOG4275 Predicted E3 ubiquitin 21.9 71 0.0015 38.5 3.0 40 1755-1809 300-340 (350)
490 PF14655 RAB3GAP2_N: Rab3 GTPa 21.8 1E+02 0.0023 39.7 4.7 41 495-535 306-346 (415)
491 PLN02400 cellulose synthase 21.4 93 0.002 44.1 4.4 59 1754-1816 35-94 (1085)
492 PLN03077 Protein ECB2; Provisi 21.3 2.2E+03 0.048 30.4 18.1 29 839-867 253-281 (857)
493 PLN03081 pentatricopeptide (PP 21.1 2E+03 0.044 29.9 17.3 30 838-867 188-217 (697)
494 TIGR01562 FdhE formate dehydro 21.0 2.4E+02 0.0053 35.0 7.4 45 1754-1808 183-232 (305)
495 PF00130 C1_1: Phorbol esters/ 20.8 74 0.0016 28.5 2.3 36 1753-1789 9-44 (53)
496 KOG1896 mRNA cleavage and poly 20.5 4.9E+02 0.011 37.5 10.5 68 455-529 1047-1127(1366)
497 KOG1701 Focal adhesion adaptor 20.4 24 0.00052 44.4 -1.3 73 1757-1846 276-360 (468)
498 KOG4640 Anaphase-promoting com 20.4 2.8E+02 0.0061 37.1 8.0 71 497-575 21-92 (665)
499 KOG1840 Kinesin light chain [C 20.3 1.7E+03 0.036 30.0 15.1 28 1515-1542 368-395 (508)
500 KOG1156 N-terminal acetyltrans 20.0 1.1E+03 0.024 32.1 13.1 25 1314-1338 77-101 (700)
No 1
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-95 Score=909.58 Aligned_cols=1112 Identities=23% Similarity=0.299 Sum_probs=784.0
Q ss_pred HHHHhhhhhhhhhHhhhhccCCCCChhhHHHHHHHhhhccCCCccccccCccccccccccCcceeeeEEecCChhHHHHh
Q 000170 356 EERIGQLESEITSRRAEKKVQPSLKPLELAEELEKKQASTGLHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTI 435 (1950)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i 435 (1950)
|+|.+..+++++.+++-.+.. .-... -.+..++|||++|++ .|+ -+..+.++...+.-..+|..+
T Consensus 2 ese~g~~~~~l~n~~~~~~ed-l~d~e--------~~~~p~~d~e~a~d~-----fG~-v~~~t~~~~~~~ds~~~s~~~ 66 (1206)
T KOG2079|consen 2 ESEYGRSSLKLKNGDDTRTED-LSDSE--------DSVNPSFDNEFASDT-----FGI-VAIHTSNRPFRQDSMSISDGI 66 (1206)
T ss_pred chhhhcchhhhhcCcccchhh-hhhhh--------hcCCchhhhhhhhcc-----ccc-ccccCCCCCCCcccccccccc
Confidence 556666666666655544422 11122 223448999998876 555 455555555555555555555
Q ss_pred hhccccccCCCcE--------------EEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEE
Q 000170 436 ASQAFRRDHGSPQ--------------VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTA 501 (1950)
Q Consensus 436 ~s~~f~~~~G~pt--------------~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~Vts 501 (1950)
.++.+.+.+|.+. +.++-+.+||+||++|+|+.+|+.++ +++..+++..+++|||
T Consensus 67 ~~~~~i~~H~q~~~l~~~~e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-----------L~~~~~ne~v~~~Vts 135 (1206)
T KOG2079|consen 67 SSQFFIRRHGQPQVLAVHLEDIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGN-----------LGPLHQNERVQGPVTS 135 (1206)
T ss_pred ccceeeccccchhhhHhhccCCCcceeeeeeeeeeEEEEcCchhhhhhhhhcc-----------cchhhcCCccCCccee
Confidence 5554444444432 23333467999999999999998542 1222355667899999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccc
Q 000170 502 MCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 502 LafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~ 581 (1950)
+|||.||++|+.|+.+|.|.+||+.+++.++.+. .|+.++++|-|++-. ++...++++|.+|.+|.|.|+ .++++
T Consensus 136 vafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t---~~nS~llt~D~~Gsf~~lv~n-k~~L~ 210 (1206)
T KOG2079|consen 136 VAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRT---SQNSKLLTSDTGGSFWKLVFN-KALLN 210 (1206)
T ss_pred eEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEEEEEe---CCCcEEEEccCCCceEEEEec-hhhhc
Confidence 9999999999999999999999999999999886 666555555444321 134589999999999999998 44889
Q ss_pred ceeeeEEeecCCCccccEEEeecccccccCCCCCCCCCCCCcccccccccccccccccCCcccccccCCCcccccEEEEE
Q 000170 582 RFSIKTQCLLDGQKTGIVLSASPLLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFV 661 (1950)
Q Consensus 582 ~~t~~s~~ll~g~~~g~Vla~spLp~~~~~gs~~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~ 661 (1950)
+++++++|+++| ..|+|++.+|+|. +.+|. .+.+.| ++|++.
T Consensus 211 ~~~~kskcl~sg-~~g~Vis~s~i~~-e~l~~---------------------------~~v~hf---------~~v~L~ 252 (1206)
T KOG2079|consen 211 MNTDKSKCLLSG-KNGEVISASPISD-ENLGS---------------------------LLVSHF---------GFVSLV 252 (1206)
T ss_pred ccchHHHHhhcC-CCCceEecccCCc-chhhh---------------------------hheeee---------eEEEee
Confidence 999999999999 9999999999983 22221 111222 678999
Q ss_pred eccEEEEEEeccCceeeeeccCCCCCCCCCCCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeecc--
Q 000170 662 TYQTALVVRLTPTLEVYAQIPRPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKSE-- 739 (1950)
Q Consensus 662 T~~~~~IV~l~P~~~v~~k~~rP~~v~~~slp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~~-- 739 (1950)
++++ ||.+.| .+-++ .+|+ ++++.++|....+.-. .......++.|+++||++.|+.+..++
T Consensus 253 p~~s--Ivt~fP-i~f~~--q~pP----a~v~~~~~~s~~ins~-------~ts~e~~~~ia~s~nNkL~v~sI~~sn~~ 316 (1206)
T KOG2079|consen 253 PLSS--IVTLFP-IKFMY--QKPP----AGVVGSGSHSKLINSD-------STSVEEDVVIAASYNNKLVVKSIPNSNFY 316 (1206)
T ss_pred cccc--eeeecc-eEEEE--ecCC----Cceeccccceeeeecc-------ccccccceEEEEEeCCeEEEEEEecccce
Confidence 9888 999999 44444 4453 5677778877654311 111235579999999999998875443
Q ss_pred --eeEeeEEeccccceeeeeccCCeEEEEeecCeEEEEecCCeEEEEeccccCCCCccccccccc-cccc--ccCCC---
Q 000170 740 --LKVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYLYARDGTVIHQTSFAVDGSQGYDLVGYRS-YFTN--VFGNP--- 811 (1950)
Q Consensus 740 --~~~~~~~~~~~~I~~l~WLs~~iL~vLt~s~~L~l~d~~~~~i~~t~~~~D~s~~~Dll~~~~-~f~~--~~~n~--- 811 (1950)
+....+-++..+|.+++|+.+..++.+..-..++.+|...-++.......|. -+++.. ++++ ++|++
T Consensus 317 ~ql~~~~~~efa~Silsi~W~~s~~i~~ld~~~~l~~vd~~kl~i~~~~~I~d~-----~Lv~~~~~~ks~At~g~vs~a 391 (1206)
T KOG2079|consen 317 AQLQPRREGEFAGSILSIHWRRSTGISILDNFSKLAEVDVSKLVIAWDRDIQDA-----KLVKSKYDIKSLATGGLVSPA 391 (1206)
T ss_pred EEEeeccccccccchhheeeeccccccccchhhhhcccchhhhhhhhhchhhhh-----ccCCCchhhhhhhcccccchH
Confidence 3456677899999999999999998888888888777533222221111121 233333 3333 45543
Q ss_pred -----cccccceeeeeC---cEEEEecCCcEEEE-EecCHHHHHHHHHHcCCHHHHHHHHHHhhcCccccccCCCCCHHH
Q 000170 812 -----EKSYHNCVSVRG---ASIYVLGPMHLVVS-RLLPWKERIQVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRTLDA 882 (1950)
Q Consensus 812 -----~~af~nSv~~~~---~~iflLg~~~l~vg-~llsW~drI~~Lv~~gd~~eAL~LA~~~Y~G~~~~ligLP~d~~~ 882 (1950)
..+|+++|..+. |++|+++...+++. +..+|.+|....+....|.+++++++.||..-. +-|+-.-.
T Consensus 392 ~~~i~s~~c~s~Vts~t~~~g~llvl~e~~~~llq~y~~w~ern~f~~~~~~~~dv~ql~~~~y~~~l----k~~~k~~~ 467 (1206)
T KOG2079|consen 392 FGVIGSFACYSVVTSRTGLKGHLLVLTEDGLVLLQPYCPWDERNNFSVAGLSGNDVIQLHTYFYTNSL----KRLRKAYH 467 (1206)
T ss_pred HHHHhhhhheeeeecccccccceeeeehhhHHHhccccchhhhhhhhhcccchhHHHHHHHHHHHHHH----hhHHHhhh
Confidence 456777776555 49999999887654 499999999999999999999999999998632 22211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhHhhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCccchHHHH
Q 000170 883 VQEAIMPYLVELLLSYVDEVFSYISVAFCNQIEKLAQLNNPQSRSSTVHAEIKEQFTRVGGVAVEFCVHINRTDILFDDI 962 (1950)
Q Consensus 883 rr~~l~~~l~eil~~~i~~~fs~lsla~~~~~~k~~~~~~~~~~~~~l~~~~~e~~~~l~~~~iefCl~i~~~D~LF~~i 962 (1950)
.++++.....+ |+ +.. ...++.+.++.|.-|+..+..|+|+++.
T Consensus 468 a~ea~~~~t~~----~l---------------~~v-----------------~~vls~~l~~vi~~~it~~sLdll~~~~ 511 (1206)
T KOG2079|consen 468 ASEAVSGLTVY----YL---------------GVV-----------------HRVLSRLLPTVISKLITERSLDLLREQD 511 (1206)
T ss_pred hhhhHHHHHHH----HH---------------HHH-----------------HHHHHHHHHHHHHHhhhcchhHHHHHhH
Confidence 11222111100 00 000 0123455667888999999999999999
Q ss_pred HHHHHhcCchhhHHHhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhcccchh
Q 000170 963 FSKFEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGAL 1042 (1950)
Q Consensus 963 f~~f~~~~~~~iFle~LEp~IL~g~I~~lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~LydaL 1042 (1950)
|+.+.. ....+|+|.|-.+|+.++|+++||.+.+.+++||.+.. +..+|++|++++++|||.|+++++|++|+|||++
T Consensus 512 we~l~~-~s~~vfle~l~e~V~~~tvtsisPvl~~sL~dy~~e~~-l~~ie~lIv~le~~sLDld~vlki~kq~~lfd~l 589 (1206)
T KOG2079|consen 512 WEGLFN-MSMSVFLEHLHEVVLLKTVTSISPVLAPSLADYLLEEE-LKYIENLIVTLEPSSLDLDVVLKICKQYNLFDGL 589 (1206)
T ss_pred HHhhcc-hhHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-HHHHHhheeecCcccccHHHHHHHHHHhCCcceE
Confidence 998764 45699999999999999999999999999999998876 9999999999999999999999999999999999
Q ss_pred hHHhhcccCCchhHHHHHHHHHhhhhh-hhhhhhhhhHHHHHHHHhccccCCCCCCCCCCCchhHHHHHHHHHhcccccc
Q 000170 1043 VYLFNKGLDDFRAPLEELLVVLRNSER-ESAYALGYRMLVYLKYCFKGLAFPPGHGTLPSTRLPSLRAELVQFLLEESDA 1121 (1950)
Q Consensus 1043 IYI~n~~l~DYvTPL~eLl~~i~~~~~-~~~~~~g~Kll~YLs~~LtGr~yP~g~~~ip~~~~~~aK~~I~~~Lfs~~~~ 1121 (1950)
|||||++||||.|||++||..+++... ......|+++|+|++||||||.||-| .+|.+.+.+++++++.+.|++...
T Consensus 590 iYv~~kafNDY~tplvell~~~~~difs~sEq~~gn~~f~yvs~cLTG~~YP~~--~~~ie~~~~V~~el~r~cfS~v~~ 667 (1206)
T KOG2079|consen 590 IYVNNKAFNDYDTPLVELLSRISNDIFSPSEQRLGNTIFVYVSYCLTGRFYPFG--LHPIEEQGSVSHELLRNCFSSVTT 667 (1206)
T ss_pred EEEeeehhcccccHHHHHHHHhhccccCCccccCCceEEEeeehhhcccccccc--cCchHhhchhhHHHHHHHhhcCCc
Confidence 999999999999999999999987532 23467889999999999999999954 689999999999999999988666
Q ss_pred ccchhhccccccCCChHHHHHHhcCHHHHHHHHHHhhccCCCCCCccccccccCCCCCCCCCCccchhhcccchhHHHHH
Q 000170 1122 QNSQAASSLLLKGSYLNLYHLLELDTEATLDVLRCAFIEVETPKSDFYACDMADTNAEPNNGNKMVAEYQNMLVQNTVNA 1201 (1950)
Q Consensus 1122 ~~~~~~~~~~~e~~yPyLr~LLkfD~~~fL~vL~~aF~Ed~f~n~d~~~~ds~~~~~e~~~~~~~~~~~~~i~RQ~IVd~ 1201 (1950)
.++ .+++++|||||+|||+||..||+||+.||+ .++|+.|. .-++||+||+.
T Consensus 668 k~~-----~e~e~~fPYlrllLk~d~~~flnvls~afd-~~~Fsldn----------------------~lv~rq~iI~~ 719 (1206)
T KOG2079|consen 668 KGN-----PEEEPAFPYLRLLLKSDPSRFLNVLSEAFD-ASLFSLDN----------------------ELVSRQYIIDL 719 (1206)
T ss_pred CCC-----CccCcccHHHHHHHhhCHHHHHHHHHHHhh-hhhhccch----------------------hhhhHHHHHHH
Confidence 442 368899999999999999999999999994 45444221 24579999999
Q ss_pred HHHHhhcccccCCCCCCCCCCCCCCCCCCcccchhhhhhHHhhh--cCCCCCCCHHHHHHHHHHHhcCCCCCccchhhhh
Q 000170 1202 LVHILDEDISSTDGSASKDDSGSVEAWPSTKDIGHIFEFIACYV--ASGRATVSKSVLSQILQYLTSEKNVPQSILSHIE 1279 (1950)
Q Consensus 1202 LLdIm~~~~~~~~g~~~~~~~~d~~f~Ps~~d~~~L~~FIA~~l--ar~~i~Ls~svL~~IL~~L~~~~~~~~~~~~d~~ 1279 (1950)
|+++|+.. + ...+++++|||..+ .||.+.++.+-|++++..||++- +
T Consensus 720 L~~~mk~e-----~----------------s~~~~~lifiaq~~s~yrqli~~s~shlq~~vitlcss~--~-------- 768 (1206)
T KOG2079|consen 720 LLDAMKDE-----G----------------SIRVLVLIFIAQSISKYRQLIKVSNSHLQCVVITLCSSR--V-------- 768 (1206)
T ss_pred HHHHhccc-----c----------------cchhhhHHHHHHHhhhhhHHhhhhHHHHHHHHHhhccCc--c--------
Confidence 99999974 1 13578889999988 45788999999999999999542 2
Q ss_pred hhHHHHH---HHHHHhhcCCCCCCChHHHHHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHhccCC--cchhHHHHHHHHh
Q 000170 1280 TSKRREK---QLLALLEAVPETDWNASEVLHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDE--PICAFSFIHDTLL 1354 (1950)
Q Consensus 1280 ~~e~RE~---aL~~LLs~y~~~d~d~d~lL~L~e~A~FyrVL~~LY~~~~qY~~aL~~yL~D~d~--~~~VF~yI~~~L~ 1354 (1950)
+..||. +++.+|..|...+. +..+..|++++||.|+.+||.+.++|+.+|++||+..++ ...-|-++.+.+.
T Consensus 769 -hs~rEn~~~alesll~lyh~~~d--e~~il~a~~~~~y~Vl~hi~~k~~kyed~l~~iLe~n~ek~~~~~fvs~e~e~l 845 (1206)
T KOG2079|consen 769 -HSIRENSQIALESLLPLYHSRTD--ENFILEAKEKNFYKVLFHIYKKENKYEDALSLILETNDEKEYNTDFVSIEDEIL 845 (1206)
T ss_pred -cchhHHHHHHHHhhccceeccCh--HHHHHHhhhcccceeHHHHHhhhhhHHHHHHHHHHhhhhhccccceEeeehhhh
Confidence 123555 67777777865543 344667899999999999999999999999999994432 2345777765532
Q ss_pred hcChhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcccchHHHHHhhccCChhHHHhhHHHHHhhccccccccccccCC
Q 000170 1355 QLTDNEYTAFHSAVISRIPELICLSREATFFLVIDQFNDEASHILSELRSHPKSLFLYLKTVVEVHLHGTLNLSYLRKDD 1434 (1950)
Q Consensus 1355 ~ls~~q~~~l~~aI~~~i~~Lv~id~~~Ta~Ll~e~f~~~~~~IL~~L~~~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~ 1434 (1950)
......++ -...|.++..++...+++++++|+++.+..+...|.......|..|
T Consensus 846 ---~~~~~~fr--~l~~i~e~fti~~~~~~rlli~hc~d~fa~~~~n~~re~l~v~l~l--------------------- 899 (1206)
T KOG2079|consen 846 ---KKCPPGFR--ELGKITEVFTIFDLLLSRLLIEHCVDIFADFDYNLHREILEVKLEL--------------------- 899 (1206)
T ss_pred ---ccCCcchH--HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------
Confidence 11111222 2345666678899999999999999976666655543222111111
Q ss_pred cccccccccccccccchhhHHHHhhcCcccccCCCccccHHHHHHHHHHHhhcCch--HHHHH---HhhCCCCCHHHHHH
Q 000170 1435 TLDVANCKWVKYQSKGLGAYIERISDLPKFLSSNAVHVTDDMIELYLELLCRYERD--SVLKF---LETFDSYRVEYCLR 1509 (1950)
Q Consensus 1435 ~~d~~~g~~~~~~~~~l~~Yle~L~~~p~~~~~~~~~~~~~l~elYIeLLCqydP~--~Vl~f---Lqt~~~Y~Le~aL~ 1509 (1950)
..+|++++++.|.+. ..++..+.|+-+||+|++.|+ .++.| |+....++ .+|.
T Consensus 900 ----------------~~k~l~Klfs~~si~----neLd~~l~el~~E~~ckwm~sre~Il~f~~~v~~nag~~--~~l~ 957 (1206)
T KOG2079|consen 900 ----------------TQKYLDKLFSTPSIN----NELDKRLRELHIELNCKWMSSREMILWFNGTVLSNAGSL--QILD 957 (1206)
T ss_pred ----------------HHHHHHHHcCCcchh----HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccchH--HHHH
Confidence 125777887777653 156788999999999997765 36777 45444554 4555
Q ss_pred HHHhc--CCchHHHHHHHHhCCHHHHHHHHHHHHhhHHHHHHHhhhccccccccCCCcccccccccchhhhhhhHHHHHH
Q 000170 1510 LCQEY--GITDAAAFLLERVGDVGSALLLTLSELNDKFAALETAVGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILR 1587 (1950)
Q Consensus 1510 iCee~--~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~~L~~~v~~~ls~~~s~~~~~~e~~~~~~~~~e~~~l~~~l~ 1587 (1950)
+...+ -...+.+++++..-++.+|+.+....+...=+. + + + ......
T Consensus 958 ll~~~s~h~~r~vI~e~l~~~~~a~af~l~feel~~nk~~--------------------~--n-------i--~s~~~~ 1006 (1206)
T KOG2079|consen 958 LLNQDSNHEARAVIHERLESFNLAVAFLLSFEELCLNKGK--------------------T--N-------I--SSLLES 1006 (1206)
T ss_pred HHhcChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCc--------------------h--h-------H--HHHHHH
Confidence 55544 455667777788888888888877665431000 0 0 0 011223
Q ss_pred HHHHHhhhcCCC-CCccchhHhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhcCccchhHHHHHHhhccccccchhH
Q 000170 1588 ACIGLCQRNTPR-LNPEESEVLWFKLLDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSHRGSHI 1666 (1950)
Q Consensus 1588 ~AI~lCqr~s~~-L~~ee~e~LWf~LLd~~i~pl~~~l~~k~s~~~~~~~~l~e~~~~~~~~~~~~~~~~i~~s~~~~~~ 1666 (1950)
.-+.+|-+++.. ...+.-+.||+.|++.+-. ++.... +.+. +.
T Consensus 1007 ~tms~~d~~ss~t~ts~r~erl~~~l~t~v~~--fee~~e-----~~~~-----------------------------ks 1050 (1206)
T KOG2079|consen 1007 LTMSFDDCNSSGTETSSRWERLITFLITLVGK--FEEHDE-----DLCN-----------------------------KS 1050 (1206)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHHHhcc--chhhhH-----HHHH-----------------------------HH
Confidence 445555554432 2223346777777776422 111110 0011 23
Q ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHHhc--CCCCcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000170 1667 LRKLFSQFIKEIVEGMIGYVHLPTIMSKLLS--DNGSQEFGDFKLTILGMLGTYSFERRILDTAKSLIEDDTFYTMSVLK 1744 (1950)
Q Consensus 1667 lr~lls~~i~~lLe~m~~~V~lp~IL~kIls--~~~s~~~~dfR~iL~~mL~sY~yE~~IL~~a~~Lle~Dl~~~l~~l~ 1744 (1950)
++..+.+++... . ..-|.+++. ++..++|+|+|+.|.+||++|.+|.++++...+++.........++.
T Consensus 1051 l~~~~lqlv~t~---~------~~~~~~lLe~~~nv~~tf~D~kqlLl~~~~s~~~e~el~~~s~kii~~~~l~l~~~~r 1121 (1206)
T KOG2079|consen 1051 LQEAFLQLVRTK---S------SSQMSSLLEHQDNVLMTFQDLKQLLLNVFNSYKLERELSELSQKIIEDSSLDLVQQYR 1121 (1206)
T ss_pred HHHHHHHHHHhc---c------HHHHHHHHcCCccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 333332322211 1 111344443 35678999999999999999999999999999999776556666665
Q ss_pred HHhc-CccccCCCcccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1745 KEAS-HGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1745 r~~~-rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
.... +||..+...|.+|++++|.. ....+.-.|||.-|..|..
T Consensus 1122 ~~~shr~~~iht~~c~~c~q~~~~h--~~~~~Fl~wgh~qh~qc~~ 1165 (1206)
T KOG2079|consen 1122 KFLSHRGWSIHTDDCEICGQKIWAH--LDPLLFLAWGHVQHHQCMI 1165 (1206)
T ss_pred HHhhccCceecCcchHhhhhhhhcc--CcchheeeccchhhHHHHH
Confidence 5555 89999999999999999932 2334444499999999974
No 2
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=100.00 E-value=9.9e-49 Score=437.91 Aligned_cols=186 Identities=46% Similarity=0.836 Sum_probs=171.3
Q ss_pred hhhHHHhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhcccchhhHHhhcccC
Q 000170 972 RDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGALVYLFNKGLD 1051 (1950)
Q Consensus 972 ~~iFle~LEp~IL~g~I~~lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~LydaLIYI~n~~l~ 1051 (1950)
+++|||+|||||++|+|++|||+|+|++|+||+++|+++++|+||||||+++||+||++++||+|+||||||||||++|+
T Consensus 1 k~vFle~Lep~Il~~~i~~lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~LydalIYv~n~~l~ 80 (196)
T PF12816_consen 1 KGVFLECLEPFILSGKIKSLPPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGLYDALIYVWNRALN 80 (196)
T ss_pred CchHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCCeeeeeeecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhhhhhh------h---hhhhhhhHHHHHHHHhccccCCCCCCCCCCCchhHHHHHHHHHhccccccc
Q 000170 1052 DFRAPLEELLVVLRNSERE------S---AYALGYRMLVYLKYCFKGLAFPPGHGTLPSTRLPSLRAELVQFLLEESDAQ 1122 (1950)
Q Consensus 1052 DYvTPL~eLl~~i~~~~~~------~---~~~~g~Kll~YLs~~LtGr~yP~g~~~ip~~~~~~aK~~I~~~Lfs~~~~~ 1122 (1950)
||+|||++|+..+++..++ . ....|||+|+||+|||+||+||+|+ .||++++.+||++||+|||+++++.
T Consensus 81 DYvTPL~~ll~~i~~~~~~~~~~~~~~~~~~~~~~kil~Yls~~L~Gr~yP~g~-~i~~~~~~~ak~~i~~~Lfs~~~~~ 159 (196)
T PF12816_consen 81 DYVTPLEELLELIRSALNKCQIFDSSSEEDSELGYKILVYLSYCLTGRQYPSGE-IIPEEKAPSAKREIYSFLFSGTSIP 159 (196)
T ss_pred CCcHHHHHHHHHHHHhhhcccccCcchhhhhhhHHHHHHHHHHHHcCCCCCCCC-CCChhHHHHHHHHHHHHHHcCCcCC
Confidence 9999999999999875432 1 2389999999999999999999997 5699999999999999999999998
Q ss_pred cchhh-ccccccCCChHHHHHHhcCHHHHHHHHHHhh
Q 000170 1123 NSQAA-SSLLLKGSYLNLYHLLELDTEATLDVLRCAF 1158 (1950)
Q Consensus 1123 ~~~~~-~~~~~e~~yPyLr~LLkfD~~~fL~vL~~aF 1158 (1950)
|+... .....+++|||||+||+||+++||+||++||
T Consensus 160 ~~~~~~~~~~~e~~yPyL~~LL~~d~~~fL~~L~~aF 196 (196)
T PF12816_consen 160 WPPSSGSKLLTEPPYPYLRLLLKFDAKEFLSVLNEAF 196 (196)
T ss_pred CCCCcCccccCCCCCHHHHHHHhhCHHHHHHHHHHhC
Confidence 76532 2223489999999999999999999999998
No 3
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=426.06 Aligned_cols=384 Identities=21% Similarity=0.376 Sum_probs=312.1
Q ss_pred HHhhhcCCCCCCCHHHHHHHHHHHhcCCCCCccchhhhhhhHHHHHHHHHHhhcCCCCCCChHHHHHHHH--------hh
Q 000170 1241 IACYVASGRATVSKSVLSQILQYLTSEKNVPQSILSHIETSKRREKQLLALLEAVPETDWNASEVLHLCE--------NA 1312 (1950)
Q Consensus 1241 IA~~lar~~i~Ls~svL~~IL~~L~~~~~~~~~~~~d~~~~e~RE~aL~~LLs~y~~~d~d~d~lL~L~e--------~A 1312 (1950)
||-+++++-+++.+++++.||.....+ -+..+..+++.||...++...+++..+ ..
T Consensus 442 Ia~~lPt~~~rL~p~vYemvLve~L~~----------------~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~ 505 (846)
T KOG2066|consen 442 IAPYLPTGPPRLKPLVYEMVLVEFLAS----------------DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSEST 505 (846)
T ss_pred hhccCCCCCcccCchHHHHHHHHHHHH----------------HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccch
Confidence 334455555678888888888766431 235578888888887776655544322 12
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhccCCcchhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc-
Q 000170 1313 HFYQVCGLIHTIRYNYLAALDSYMKDVDEPICAFSFIHDTLLQLTDNEYTAFHSAVISRIPELICLSREATFFLVIDQF- 1391 (1950)
Q Consensus 1313 ~FyrVL~~LY~~~~qY~~aL~~yL~D~d~~~~VF~yI~~~L~~ls~~q~~~l~~aI~~~i~~Lv~id~~~Ta~Ll~e~f- 1391 (1950)
..-++|+.||..+++|.+|+..|++-. ..++|+.|.++ .|.+.+.+.+..||.+|.++++.++.++-
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk--~~~vf~lI~k~----------nL~d~i~~~Iv~Lmll~skka~~lLldn~d 573 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQ--DKDVFDLIKKH----------NLFDQIKDQIVLLMLLDSKKAIDLLLDNRD 573 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhcc--ChHHHHHHHHH----------hhHHHHHHHHHHHHccchhhHHHHHhhccc
Confidence 456889999999999999999999965 45699999875 57788999999999999999999999885
Q ss_pred ccchHHHHHhhccCChhHHHhhHHHHHhhccccccccccccCCcccccccccccccccchhhHHHHhhcCcccccCCCcc
Q 000170 1392 NDEASHILSELRSHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWVKYQSKGLGAYIERISDLPKFLSSNAVH 1471 (1950)
Q Consensus 1392 ~~~~~~IL~~L~~~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~~~d~~~g~~~~~~~~~l~~Yle~L~~~p~~~~~~~~~ 1471 (1950)
......|++++.+.|++||.||..++.... .
T Consensus 574 ~ip~a~Vveql~~~P~~l~~YL~kl~~rd~-------------------------------------------------~ 604 (846)
T KOG2066|consen 574 SISPSEVVEQLEDNPKLLYCYLHKLFKRDH-------------------------------------------------F 604 (846)
T ss_pred cCCHHHHHHHHhcChHHHHHHHHHHhhcCc-------------------------------------------------c
Confidence 668899999999999999999998876420 0
Q ss_pred ccHHHHHHHHHHHhhcCchHHHHHHhhCCCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhhHHHHHHHh
Q 000170 1472 VTDDMIELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELNDKFAALETA 1551 (1950)
Q Consensus 1472 ~~~~l~elYIeLLCqydP~~Vl~fLqt~~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~~L~~~ 1551 (1950)
...+..+.-|+|.|+|+..++++||+.+.+|++++|+++|+++|+++++||||.|+|+..+||.+++..|.+
T Consensus 605 ~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~d-------- 676 (846)
T KOG2066|consen 605 MGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRD-------- 676 (846)
T ss_pred ccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhC--------
Confidence 113456677888899999999999999999999999999999999999999999999999999999877654
Q ss_pred hhccccccccCCCcccccccccchhhhhhhHHHHHHHHHHHhhhcCCCCCccchhHhHHHHHHHhccccccchhhhhhhh
Q 000170 1552 VGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLNPEESEVLWFKLLDSFCEPLMGSFVERASER 1631 (1950)
Q Consensus 1552 v~~~ls~~~s~~~~~~e~~~~~~~~~e~~~l~~~l~~AI~lCqr~s~~L~~ee~e~LWf~LLd~~i~pl~~~l~~k~s~~ 1631 (1950)
++.||++|+.+. +.+||-.||.++..-
T Consensus 677 ----------------------------------ie~AIefvKeq~-------D~eLWe~LI~~~ldk------------ 703 (846)
T KOG2066|consen 677 ----------------------------------IEKAIEFVKEQD-------DSELWEDLINYSLDK------------ 703 (846)
T ss_pred ----------------------------------HHHHHHHHHhcC-------CHHHHHHHHHHhhcC------------
Confidence 467999999975 679999999987541
Q ss_pred hhhhhhhhhhcCccchhHHHHHHhhccccccchhHHHHHHHHHHHHHHHhhccCCChHHHHHHHhcCCCCcchhhHHHHH
Q 000170 1632 ENHSRMLEESFGSQEDAEACIIKWRISKSHRGSHILRKLFSQFIKEIVEGMIGYVHLPTIMSKLLSDNGSQEFGDFKLTI 1711 (1950)
Q Consensus 1632 ~~~~~~l~e~~~~~~~~~~~~~~~~i~~s~~~~~~lr~lls~~i~~lLe~m~~~V~lp~IL~kIls~~~s~~~~dfR~iL 1711 (1950)
.+|++.+++ ...+++|-.|+++| +...++..+|+.|
T Consensus 704 ----------------------------------------Pe~~~~ll~-i~~~~dpl~ii~ki---p~g~~IPnLrdsl 739 (846)
T KOG2066|consen 704 ----------------------------------------PEFIKALLN-IGEHEDPLLIIRKI---PDGLEIPNLRDSL 739 (846)
T ss_pred ----------------------------------------cHHHHHHHH-hhhcccHHHHHhcC---CCCCCCccHHHHH
Confidence 012222222 44568889999998 4578899999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-CCcccccccccccCC-CCCeEEEecCCCcccccccc
Q 000170 1712 LGMLGTYSFERRILDTAKSLIEDDTFYTMSVLKKEASHGYAPR-SLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1712 ~~mL~sY~yE~~IL~~a~~Lle~Dl~~~l~~l~r~~~rG~~p~-s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~ 1789 (1950)
.+||..|+.+.++.+.|.+++.+|++.....+.+.+++|.... ..+|+.|-.+..... ..+.++||.|||.||..|+.
T Consensus 740 ~Kil~dy~~q~el~~~c~~i~~nd~~~l~~k~~~~~~~Gv~v~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~ 819 (846)
T KOG2066|consen 740 VKILQDYNLQLELRQGCYDILKNDSKSLLNKFLKTARRGVLVSVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLM 819 (846)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeEeehhhhhhhcccccccCcccceeeEEEccchhhhcccc
Confidence 9999999999999999999999999999999999999998764 579999999987543 24679999999999999998
Q ss_pred cccccCCCCCCCCCCCcCCCcCc
Q 000170 1790 LENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1790 ~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
.+.+.. .|..|.....+
T Consensus 820 ~~~~~~------~~~~~~~~~~~ 836 (846)
T KOG2066|consen 820 MESLRN------ACNIESGKNRT 836 (846)
T ss_pred cHHHhc------ccChhhceecC
Confidence 765432 28888765544
No 4
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-21 Score=240.48 Aligned_cols=380 Identities=18% Similarity=0.256 Sum_probs=275.6
Q ss_pred CChHHHHHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHhccCCcchhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHhcC
Q 000170 1300 WNASEVLHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDEPICAFSFIHDTLLQLTDNEYTAFHSAVISRIPELICLS 1379 (1950)
Q Consensus 1300 ~d~d~lL~L~e~A~FyrVL~~LY~~~~qY~~aL~~yL~D~d~~~~VF~yI~~~L~~ls~~q~~~l~~aI~~~i~~Lv~id 1379 (1950)
+|.+.+++.|++++|++-..+|..+.+++..+|+..+++......++.||..+ ..+ ++-..+.++-..|++.+
T Consensus 464 fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~sl----p~~---e~l~~l~kyGk~Ll~h~ 536 (933)
T KOG2114|consen 464 FDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSL----PIS---ELLRTLNKYGKILLEHD 536 (933)
T ss_pred eeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcC----CHH---HHHHHHHHHHHHHHhhC
Confidence 35677889999999999999999999999999999999998888999999764 333 34466888999999999
Q ss_pred HHHHHHHHHhhcccch----HHH----------HHhhccCChhHHHhhHHHHHhhccccccccccccCCccccccccccc
Q 000170 1380 REATFFLVIDQFNDEA----SHI----------LSELRSHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWVK 1445 (1950)
Q Consensus 1380 ~~~Ta~Ll~e~f~~~~----~~I----------L~~L~~~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~~~d~~~g~~~~ 1445 (1950)
|++|..++++.+.+.+ .+. +.....+++.++.||..+.+.... + .+ ..+..
T Consensus 537 P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~----s-----~e------~~~i~ 601 (933)
T KOG2114|consen 537 PEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPD----S-----EE------VLEII 601 (933)
T ss_pred hHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCC----c-----hh------hhccc
Confidence 9999999998775532 111 112336778999999987664211 0 00 00111
Q ss_pred ccc--------------------cchhhHHHHhhcCcccccCCCccccHHHHHHHHHHHhhcCchHHHHHHhhC------
Q 000170 1446 YQS--------------------KGLGAYIERISDLPKFLSSNAVHVTDDMIELYLELLCRYERDSVLKFLETF------ 1499 (1950)
Q Consensus 1446 ~~~--------------------~~l~~Yle~L~~~p~~~~~~~~~~~~~l~elYIeLLCqydP~~Vl~fLqt~------ 1499 (1950)
+.+ .++..|.+- ......|..-+..+..+|+++.|+--|++-.-.++..
T Consensus 602 ~t~~~~~l~~~sf~~~~~~~n~~~~l~h~~~~-----~~~~sdpq~kt~~~~~l~~~~~~~~~~~~~~~l~ksn~l~d~~ 676 (933)
T KOG2114|consen 602 YTLLELSLMQKSFVTKPFEFNLEAELAHYQQY-----EGFDSDPQVKTTTLYDLYLELDAEDVPERTIILRKSNKLLDYA 676 (933)
T ss_pred cchhhhhhhhccccccchhhccHHHHHHHHhh-----cccccChhhhhccchhhHHHHHhhhcccccchhhhhcchhhhh
Confidence 110 011111110 0001233334455678999999988676533333321
Q ss_pred -CCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhhHHHHHHHhhhccccccccCCCcccccccccchhhh
Q 000170 1500 -DSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELNDKFAALETAVGSALPIAVSNGSVSVEHFSTVLNMEE 1578 (1950)
Q Consensus 1500 -~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~~L~~~v~~~ls~~~s~~~~~~e~~~~~~~~~e 1578 (1950)
.+|+.+.+|.+|+-++..|+..|++++.+..++-+....+.
T Consensus 677 ~~nvd~d~al~l~qm~df~dg~ly~~~k~k~~~dl~~~~~q~-------------------------------------- 718 (933)
T KOG2114|consen 677 ASNVDEDAALLLSQMSDFTDGLLYSYEKLKEGQDLMLYFQQI-------------------------------------- 718 (933)
T ss_pred hccccchHHHHHHHHhCCCchHHHHHhhccchHHHHHHHHHh--------------------------------------
Confidence 25889999999999999999999999999999888654321
Q ss_pred hhhHHHHHHHHHHHhhhcCCCCCccchhHhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhcCccchhHHHHHHhhcc
Q 000170 1579 VNDVNNILRACIGLCQRNTPRLNPEESEVLWFKLLDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRIS 1658 (1950)
Q Consensus 1579 ~~~l~~~l~~AI~lCqr~s~~L~~ee~e~LWf~LLd~~i~pl~~~l~~k~s~~~~~~~~l~e~~~~~~~~~~~~~~~~i~ 1658 (1950)
.-.+.++.+|++.++ ++++||..+|.+|++- +.+ +++.
T Consensus 719 -----~d~E~~it~~~~~g~-----~~p~l~~~~L~yF~~~--~~i-------~~~~----------------------- 756 (933)
T KOG2114|consen 719 -----SDPETVITLCERLGK-----EDPSLWLHALKYFVSE--ESI-------EDCY----------------------- 756 (933)
T ss_pred -----hChHHHHHHHHHhCc-----cChHHHHHHHHHHhhh--cch-------hhHH-----------------------
Confidence 114677899999875 4789999999999762 000 0110
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhccCCChHHHHHHHhcCCCCcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 000170 1659 KSHRGSHILRKLFSQFIKEIVEGMIGYVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYSFERRILDTAKSLIEDDTFY 1738 (1950)
Q Consensus 1659 ~s~~~~~~lr~lls~~i~~lLe~m~~~V~lp~IL~kIls~~~s~~~~dfR~iL~~mL~sY~yE~~IL~~a~~Lle~Dl~~ 1738 (1950)
. .+.+++..|. |...+| |.++-++|.+++..+|+-+|++|..-|++|+-+.+--+.+-+...+|+-+
T Consensus 757 ------~----~v~~vl~~I~--~~~~ip-pl~VL~~Lakn~~ltls~IkD~ii~~l~~~~~~I~qd~~~Ie~yk~~i~e 823 (933)
T KOG2114|consen 757 ------E----IVYKVLEAIE--MQERIP-PLHVLQILAKNGTLTLSVIKDYIIKWLNKYSTIIEQDEDAIEVYKKDIEE 823 (933)
T ss_pred ------H----HHHHHHHHHH--hcccCC-HHHHHHHHhcCCceEEehhHHHHHHHHHhhhHHHHhhHHHHHHHHHHHHH
Confidence 1 1223333332 334454 66666678889999999999999999999998888888888888899998
Q ss_pred HHHHHHHHhcCccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1739 TMSVLKKEASHGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1739 ~l~~l~r~~~rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
.-+++...+.+.-..+-.+|..|+-.|..| +|+|.|||+||+.|+. + +...||.|....++
T Consensus 824 ~r~~l~~lr~sa~i~q~skCs~C~~~LdlP-----~VhF~CgHsyHqhC~e-~-------~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 824 KRQELETLRTSAQIFQVSKCSACEGTLDLP-----FVHFLCGHSYHQHCLE-D-------KEDKCPKCLPELRG 884 (933)
T ss_pred HHHHHHHhhcccceeeeeeecccCCccccc-----eeeeecccHHHHHhhc-c-------CcccCCccchhhhh
Confidence 888899999988888889999999999988 7999999999999994 1 35799999985544
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.42 E-value=2.2e-11 Score=151.43 Aligned_cols=235 Identities=21% Similarity=0.301 Sum_probs=152.0
Q ss_pred CCcEEEEEc--CCEEEEEeCC-CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 445 GSPQVLAVH--PSFIAVGMSK-GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 445 G~pt~ia~s--~~~IAvGts~-G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
-.++.++++ |++||+|+++ |.++||+++. ...++. .++|...++|+++||||+++|+|.+||.|+
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs----------EsYVlK--QQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS----------ESYVLK--QQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeec----------cceeee--ccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 345677777 8999999988 9999999953 124443 356999999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEE
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLS 601 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla 601 (1950)
+||.++|-|..|++ .|+++|+.+.|+.. ...++|+.-+|.|..|.+. .+++-++|.. +.++ .
T Consensus 376 vWn~~SgfC~vTFt-eHts~Vt~v~f~~~------g~~llssSLDGtVRAwDlk--------RYrNfRTft~--P~p~-Q 437 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFT-EHTSGVTAVQFTAR------GNVLLSSSLDGTVRAWDLK--------RYRNFRTFTS--PEPI-Q 437 (893)
T ss_pred EEeccCceEEEEec-cCCCceEEEEEEec------CCEEEEeecCCeEEeeeec--------ccceeeeecC--CCce-e
Confidence 99999999999997 99999999999974 3466666667766655543 3444455543 1111 1
Q ss_pred eecccccccCCCCCCCCCCCCcccccccccccccccccCCcccccccCCCcccccEEEEEec--cEEEEEEeccC--cee
Q 000170 602 ASPLLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTY--QTALVVRLTPT--LEV 677 (1950)
Q Consensus 602 ~spLp~~~~~gs~~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~T~--~~~~IV~l~P~--~~v 677 (1950)
++.+-.|. + |. +|.-.+. .-++|.++... +.+
T Consensus 438 fscvavD~----------------s-------Ge---------------------lV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 438 FSCVAVDP----------------S-------GE---------------------LVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred eeEEEEcC----------------C-------CC---------------------EEEeeccceEEEEEEEeecCeeeeh
Confidence 11111100 0 00 1111111 12444444333 222
Q ss_pred eeeccCCCCCCCCCCCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeecceeEeeEEeccccceeeee
Q 000170 678 YAQIPRPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAW 757 (1950)
Q Consensus 678 ~~k~~rP~~v~~~slp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~~~~~~~~~~~~~~I~~l~W 757 (1950)
+--. ++-+.+|++.+.. ..+.--+|+++|.+..+..+. ...-...+...+.++.+
T Consensus 474 LsGH-------EgPVs~l~f~~~~-----------------~~LaS~SWDkTVRiW~if~s~-~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 474 LSGH-------EGPVSGLSFSPDG-----------------SLLASGSWDKTVRIWDIFSSS-GTVETLEIRSDVLAVSF 528 (893)
T ss_pred hcCC-------CCcceeeEEcccc-----------------CeEEeccccceEEEEEeeccC-ceeeeEeeccceeEEEE
Confidence 2111 2333444444421 124445799999998874321 12334556788889988
Q ss_pred ccC-CeEEEEeecCeEEEEecC
Q 000170 758 LDD-QMLVVLTLLGQLYLYARD 778 (1950)
Q Consensus 758 Ls~-~iL~vLt~s~~L~l~d~~ 778 (1950)
=.+ .-|+|.|.++++.+||..
T Consensus 529 rPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhh
Confidence 733 568999999999999963
No 6
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.1e-11 Score=155.51 Aligned_cols=319 Identities=22% Similarity=0.295 Sum_probs=198.9
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHhccCCcchhHHHHHHHHhhcChhHHHHHHH
Q 000170 1287 QLLALLEAVPETDWNASEVLHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDEPICAFSFIHDTLLQLTDNEYTAFHS 1366 (1950)
Q Consensus 1287 aL~~LLs~y~~~d~d~d~lL~L~e~A~FyrVL~~LY~~~~qY~~aL~~yL~D~d~~~~VF~yI~~~L~~ls~~q~~~l~~ 1366 (1950)
...+|+..+. +.+.++..+---+=|+.+...+.+++.|.++|+..++..+ + +
T Consensus 509 tv~~l~~~~~----~~e~ll~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~-~-----------------------e 560 (911)
T KOG2034|consen 509 TVYQLLASHG----RQEELLQFANLIKDYEFVVSYWIQQENYEEALEVLLNQRN-P-----------------------E 560 (911)
T ss_pred HHHHHHHHcc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-h-----------------------h
Confidence 3566777663 2345555554445678888888999999999999888521 1 2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHhhc-ccchHHHHHhhc---c-----CChhHHHhhHHHHHhhccccccccccccCCccc
Q 000170 1367 AVISRIPELICLSREATFFLVIDQF-NDEASHILSELR---S-----HPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLD 1437 (1950)
Q Consensus 1367 aI~~~i~~Lv~id~~~Ta~Ll~e~f-~~~~~~IL~~L~---~-----~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~~~d 1437 (1950)
...++.+.|+...|+.|+...+..- ...+..+...|. . .+.....||+-.+++
T Consensus 561 l~yk~ap~Li~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~------------------ 622 (911)
T KOG2034|consen 561 LFYKYAPELITHSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEV------------------ 622 (911)
T ss_pred hHHHhhhHHHhcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHh------------------
Confidence 2455677888888888766554432 122333333221 1 112344444433211
Q ss_pred ccccccccccccchhhHHHHhhcCcccccCCCccccHHHHHHHHHHHhhcCchHHHHHHhhC------CCCCHHHHHHHH
Q 000170 1438 VANCKWVKYQSKGLGAYIERISDLPKFLSSNAVHVTDDMIELYLELLCRYERDSVLKFLETF------DSYRVEYCLRLC 1511 (1950)
Q Consensus 1438 ~~~g~~~~~~~~~l~~Yle~L~~~p~~~~~~~~~~~~~l~elYIeLLCqydP~~Vl~fLqt~------~~Y~Le~aL~iC 1511 (1950)
.-...+.++..++.|+.++.|+.++-+|+.. -.|+++-++++|
T Consensus 623 -------------------------------l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~alRlc 671 (911)
T KOG2034|consen 623 -------------------------------LGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYALRLC 671 (911)
T ss_pred -------------------------------ccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHHHHH
Confidence 1124567888999999999999988777753 249999999999
Q ss_pred HhcCCchHHHHHHHHhCCHHHHHHHHHHHHhhHHHHHHHhhhccccccccCCCcccccccccchhhhhhhHHHHHHHHHH
Q 000170 1512 QEYGITDAAAFLLERVGDVGSALLLTLSELNDKFAALETAVGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIG 1591 (1950)
Q Consensus 1512 ee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~~L~~~v~~~ls~~~s~~~~~~e~~~~~~~~~e~~~l~~~l~~AI~ 1591 (1950)
-+++...|+++|+..++.+.+|+++.++. + ++
T Consensus 672 ~~~~~~ra~V~l~~~l~l~~~aVdlAL~~--d----------------------------------------------~d 703 (911)
T KOG2034|consen 672 LKFKKTRACVFLLCMLNLFEDAVDLALQF--D----------------------------------------------ID 703 (911)
T ss_pred HHhCccceeeeHHHHHHHHHHHHHHHhhc--C----------------------------------------------HH
Confidence 99999999999999999999999977643 0 12
Q ss_pred HhhhcCCC--CCccchhHhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhcCccchhHHHHHHhhccccccchhHHHH
Q 000170 1592 LCQRNTPR--LNPEESEVLWFKLLDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSHRGSHILRK 1669 (1950)
Q Consensus 1592 lCqr~s~~--L~~ee~e~LWf~LLd~~i~pl~~~l~~k~s~~~~~~~~l~e~~~~~~~~~~~~~~~~i~~s~~~~~~lr~ 1669 (1950)
+|+.-... .+.+.+..||...-.+++... .+..
T Consensus 704 lak~~A~~~ee~e~lrKkLWLkIAkh~v~~~-----------~~ik---------------------------------- 738 (911)
T KOG2034|consen 704 LAKVIANDPEEDEDLRKKLWLKIAKHVVKQE-----------NDIK---------------------------------- 738 (911)
T ss_pred HHhhhhcChhhHHHHHHHHHHHHHHHHHHhh-----------ccHH----------------------------------
Confidence 22221110 011124589999999876521 0000
Q ss_pred HHHHHHHHHHHhhccCCChHHHHHHHhcCCCCcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Q 000170 1670 LFSQFIKEIVEGMIGYVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYSFERRILDTAKSLIEDD--TFYTMSVLKKEA 1747 (1950)
Q Consensus 1670 lls~~i~~lLe~m~~~V~lp~IL~kIls~~~s~~~~dfR~iL~~mL~sY~yE~~IL~~a~~Lle~D--l~~~l~~l~r~~ 1747 (1950)
+.+.-+. . .+.+..+.++--+ +.-..+++||..|.+-|+.|+-.. -++...+.+.- ....-..+...+
T Consensus 739 ---k~i~~Lk-~-~~lLkiedlLpff---pdf~~id~~keaic~~L~~~n~ri--eel~~em~eat~~a~~I~~~~~~l~ 808 (911)
T KOG2034|consen 739 ---KAIRFLK-E-NELLTIEDLLPFF---PDFTKIDNLKEAICDFLEDYNKRI--EELQEEMIEATELADEIRTEISKLR 808 (911)
T ss_pred ---HHHHHhc-c-Ccccchhhhhccc---cchhhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 0000000 0 1222333444333 334568899999999999987653 33334444431 112223334444
Q ss_pred cC-ccccCCCcccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1748 SH-GYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1748 ~r-G~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
+| +..-.+..|.+|+++|...+ ++||.|||+||..|+.
T Consensus 809 ~ry~v~ep~d~C~~C~~~ll~~p----F~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 809 QRYRVLEPQDSCDHCGRPLLIKP----FYVFPCGHCFHRDCLI 847 (911)
T ss_pred cceEEecCccchHHhcchhhcCc----ceeeeccchHHHHHHH
Confidence 44 44456899999999999874 9999999999999985
No 7
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=6.4e-11 Score=136.02 Aligned_cols=121 Identities=26% Similarity=0.359 Sum_probs=97.6
Q ss_pred cccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC--EEEEecC
Q 000170 439 AFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD--LLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~--~LasG~~ 516 (1950)
.|-.+.|++||+|+++.|+|+|++|-+|+|||++.. + .++ ..-.|+|.|||+.|.++-+ +|++|++
T Consensus 38 ~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~---------~--qlg-~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR---------K--QLG-ILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred cccccccceeEEEecceeEeccCCCCcEEEEeccch---------h--hhc-ceeccccceEEEEecCCcchhheeeecC
Confidence 345688999999999999999999999999998541 1 111 2234899999999999987 9999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK 586 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~ 586 (1950)
||+|.+|++....+++++. +|...|++|+..|. +..++..++++ +.|+|+-..++
T Consensus 106 DG~i~iw~~~~W~~~~slK-~H~~~Vt~lsiHPS-----~KLALsVg~D~---------~lr~WNLV~Gr 160 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLK-AHKGQVTDLSIHPS-----GKLALSVGGDQ---------VLRTWNLVRGR 160 (362)
T ss_pred CCcEEEEEcCCeEEeeeec-ccccccceeEecCC-----CceEEEEcCCc---------eeeeehhhcCc
Confidence 9999999999999999997 99999999999985 34444444443 26778754443
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=7.3e-12 Score=145.95 Aligned_cols=143 Identities=12% Similarity=0.134 Sum_probs=108.9
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.+-.+.|.+-|++++| .+||+|+-|-+|++||.-. ++.. .+-.+|..+|.||+|||||++||+|+.
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-------eTp~-----~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-------ETPL-----FTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC-------CCcc-----eeecCCccEEEEEEECCCcchhhcccc
Confidence 3445677788988886 7999999999999999842 2211 133679999999999999999999999
Q ss_pred CCcEEEEECCCCcee-eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 517 DGHVTVWDVQRASAA-KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l-~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
||+|++||-++|+++ +++. ||...|++++|-|-.-.+... .+.++..+|. +++|+.-...|..++.| |
T Consensus 178 dg~I~lwdpktg~~~g~~l~-gH~K~It~Lawep~hl~p~~r-~las~skDg~--------vrIWd~~~~~~~~~lsg-H 246 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALR-GHKKWITALAWEPLHLVPPCR-RLASSSKDGS--------VRIWDTKLGTCVRTLSG-H 246 (480)
T ss_pred CCeEEEecCCCCCccccccc-CcccceeEEeecccccCCCcc-ceecccCCCC--------EEEEEccCceEEEEecc-C
Confidence 999999999999875 5665 999999999999743222233 4445544443 45666555668889999 9
Q ss_pred cccEEEeec
Q 000170 596 TGIVLSASP 604 (1950)
Q Consensus 596 ~g~Vla~sp 604 (1950)
+..|-++..
T Consensus 247 T~~VTCvrw 255 (480)
T KOG0271|consen 247 TASVTCVRW 255 (480)
T ss_pred ccceEEEEE
Confidence 988855544
No 9
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.6e-11 Score=155.66 Aligned_cols=353 Identities=18% Similarity=0.234 Sum_probs=246.6
Q ss_pred HHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHhccCCc-------chhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHhc
Q 000170 1306 LHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDEP-------ICAFSFIHDTLLQLTDNEYTAFHSAVISRIPELICL 1378 (1950)
Q Consensus 1306 L~L~e~A~FyrVL~~LY~~~~qY~~aL~~yL~D~d~~-------~~VF~yI~~~L~~ls~~q~~~l~~aI~~~i~~Lv~i 1378 (1950)
-...++++.|+.|..||..+|+|.+||+.|-+-.+.. .+-.+.|.+.|..+..++ ...|+++..++++-
T Consensus 498 e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~----~~Li~~y~~wvl~~ 573 (877)
T KOG2063|consen 498 ETVLKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAEN----LDLILEYADWVLNK 573 (877)
T ss_pred HHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccc----hhHHHHHhhhhhcc
Confidence 3344678999999999999999999999998754422 122333444443333322 15699999999999
Q ss_pred CHHHHHHHHHhhcc-----cchHHHHHhhc-cCChhHHHhhHHHHHhhccccccccccccCCcccccccccccccccchh
Q 000170 1379 SREATFFLVIDQFN-----DEASHILSELR-SHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWVKYQSKGLG 1452 (1950)
Q Consensus 1379 d~~~Ta~Ll~e~f~-----~~~~~IL~~L~-~~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~~~d~~~g~~~~~~~~~l~ 1452 (1950)
+++.+.+++.+.-+ -++.+|++.|. ..|.++..||+.++..+.. + ...+|+..++
T Consensus 574 ~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~---~----------------~~~lht~ll~ 634 (877)
T KOG2063|consen 574 NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL---T----------------STLLHTVLLK 634 (877)
T ss_pred CchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc---c----------------chHHHHHHHH
Confidence 99999998877322 36888998774 6789999999999875311 0 1234666677
Q ss_pred hHHHHhhcCcccccCCCccccHHHHHHHHHHHhhcCchHHHHHHhhCCCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHH
Q 000170 1453 AYIERISDLPKFLSSNAVHVTDDMIELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGS 1532 (1950)
Q Consensus 1453 ~Yle~L~~~p~~~~~~~~~~~~~l~elYIeLLCqydP~~Vl~fLqt~~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~e 1532 (1950)
.|.+++...... ... .++..|.= -.++++.||+..+.|+....|+-....++++..+.++.|+|++++
T Consensus 635 ly~e~v~~~~~~-~~k----g~e~~E~~-------~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~ 702 (877)
T KOG2063|consen 635 LYLEKVLEQAST-DGK----GEEAPETT-------VREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEE 702 (877)
T ss_pred HHHHHHhhccCc-hhc----cccchhhh-------HHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHH
Confidence 777776421100 000 11222220 145677899999999999988888889999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHhhhccccccccCCCcccccccccchhhhhhhHHHHHHHHHHHhhhcCCCCCccchhHhHHHH
Q 000170 1533 ALLLTLSELNDKFAALETAVGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLNPEESEVLWFKL 1612 (1950)
Q Consensus 1533 AL~liL~~L~~~l~~L~~~v~~~ls~~~s~~~~~~e~~~~~~~~~e~~~l~~~l~~AI~lCqr~s~~L~~ee~e~LWf~L 1612 (1950)
|+.++++.|.+ +..|-.+|..+.+ +++-+.+....|
T Consensus 703 aL~Iyv~~L~d------------------------------------------~~~A~~Yc~~~y~--~~~~~~~~y~~l 738 (877)
T KOG2063|consen 703 ALHIYVHELDD------------------------------------------IDAAESYCLPQYE--SDKTNKEIYLTL 738 (877)
T ss_pred HHHHHHHHhcc------------------------------------------hhHHHHHHHHhcc--CCCcccHHHHHH
Confidence 99999877644 3567789988876 444478999999
Q ss_pred HHHhccccccchhhhhhhhhhhhhhhhhhcCccchhHHHHHHhhccccccchhHHHHHHHHHHHHHHHhhccCCChHHHH
Q 000170 1613 LDSFCEPLMGSFVERASERENHSRMLEESFGSQEDAEACIIKWRISKSHRGSHILRKLFSQFIKEIVEGMIGYVHLPTIM 1692 (1950)
Q Consensus 1613 Ld~~i~pl~~~l~~k~s~~~~~~~~l~e~~~~~~~~~~~~~~~~i~~s~~~~~~lr~lls~~i~~lLe~m~~~V~lp~IL 1692 (1950)
|..++.|+ ..+... .+.. ..+|+.-.+.+++-.++
T Consensus 739 L~~~l~~~-~d~~~~-----------------------------------~~~i---------l~~l~~h~~r~d~~~~~ 773 (877)
T KOG2063|consen 739 LRIYLNPI-HDYKSG-----------------------------------PLYI---------LNFLQKHADRLDLAQVL 773 (877)
T ss_pred HHHHhcch-hhcccc-----------------------------------chhh---------hhHHHhhhhhcCHHHHH
Confidence 99988773 111100 0011 11334445667777788
Q ss_pred HHHhcCCCCcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCccccCCCcccccccccccCCCC
Q 000170 1693 SKLLSDNGSQEFGDFKLTILGMLGTYSFERRILDTAKSLIEDDTFYTMSVLKK-EASHGYAPRSLLCCICNCLLTKNSSS 1771 (1950)
Q Consensus 1693 ~kIls~~~s~~~~dfR~iL~~mL~sY~yE~~IL~~a~~Lle~Dl~~~l~~l~r-~~~rG~~p~s~~C~iC~k~L~~~~~~ 1771 (1950)
..+. ...++.++...|.++|..-.-+.+-.+..+.++..........+.. ...++.......|.+|.+++...
T Consensus 774 ~~Lp---~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q~E~~~~~~~l~~~~s~~~~l~~~~~C~~C~k~i~~s--- 847 (877)
T KOG2063|consen 774 KLLP---DDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQAELLPSTEELNKLRSSKIQLNDESLCSICEKRIGTS--- 847 (877)
T ss_pred HhCC---ccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhcchHHHHHHhhcceEEEchhhHhHHHHhhhcCe---
Confidence 8774 4678899999999999876556666677777776654433333333 33446666789999999999854
Q ss_pred CeEEEecCCCcccccccc
Q 000170 1772 FQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1772 ~~ivVF~CGHafH~~CL~ 1789 (1950)
.++.|+=|+..|..|..
T Consensus 848 -~f~ryp~g~lvh~~C~~ 864 (877)
T KOG2063|consen 848 -VFVRYPNGILVHLSCAK 864 (877)
T ss_pred -eEEECCCCcEEEEEeec
Confidence 58999999999999974
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.32 E-value=3.5e-12 Score=160.34 Aligned_cols=97 Identities=23% Similarity=0.403 Sum_probs=84.5
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
....+.+.|+++|| +|+|.|++|.+|++||+..+ .. ..++ .+|.++|+||+|||+|.|||+|++||
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G------~~-VRiF-----~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG------NS-VRIF-----TGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCC------cE-EEEe-----cCCCCceEEEEEcCCCceEeecccCC
Confidence 34566689999998 79999999999999998543 11 1223 45999999999999999999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.|.+||+.+|+.++.+. +|++.|.++.|+.+
T Consensus 600 ~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 600 LIKIWDLANGSLVKQLK-GHTGTIYSLSFSRD 630 (707)
T ss_pred cEEEEEcCCCcchhhhh-cccCceeEEEEecC
Confidence 99999999999998887 99999999999987
No 11
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.25 E-value=1.7e-11 Score=144.91 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=111.1
Q ss_pred cCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+.-.+.+|+.+ |+.+|+|+-|..=+|||++++ .+++ ...+|..+|-+|+|||+|..||+|+.|+++
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg---------r~im---~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG---------RCIM---FLAGHIKEILSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeecccC---------cEEE---EecccccceeeEeECCCceEEeecCCCCcE
Confidence 44557788887 589999999999999999763 4554 235699999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vl 600 (1950)
+|||+...+++.++. +|.+-|+.|+|.++ .+..++.++-+. + +++|...+..+.+.|-| |.++|+
T Consensus 370 kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~----~g~fL~TasyD~--------t-~kiWs~~~~~~~ksLaG-He~kV~ 434 (459)
T KOG0272|consen 370 KVWDLRMRSELYTIP-AHSNLVSQVKYSPQ----EGYFLVTASYDN--------T-VKIWSTRTWSPLKSLAG-HEGKVI 434 (459)
T ss_pred EEeeecccccceecc-cccchhhheEeccc----CCeEEEEcccCc--------c-eeeecCCCcccchhhcC-CccceE
Confidence 999999999999997 99999999999985 356666665443 2 67787667777889999 999996
Q ss_pred Eeec
Q 000170 601 SASP 604 (1950)
Q Consensus 601 a~sp 604 (1950)
++.-
T Consensus 435 s~Di 438 (459)
T KOG0272|consen 435 SLDI 438 (459)
T ss_pred EEEe
Confidence 5544
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=2.3e-11 Score=141.79 Aligned_cols=137 Identities=21% Similarity=0.279 Sum_probs=108.9
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEE-----cCCCCEE
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCF-----NQPGDLL 511 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLaf-----S~DG~~L 511 (1950)
..+.+.-=+.|++-+| +.||+|+.+|.|.+||-+.+ . ..+.+..+|..+|++||| .|.+.+|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg---------~--~~g~~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG---------Q--QIGRALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC---------C--cccccccCcccceeEEeecccccCCCccce
Confidence 3455555688888775 89999999999999998653 1 123356789999999999 5678999
Q ss_pred EEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec
Q 000170 512 LAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL 591 (1950)
Q Consensus 512 asG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll 591 (1950)
|+++.||+|+|||+.-|+|+.++. ||+.+|++|.|=+++ ++-++..++ ++|+|+...+.+-+.|
T Consensus 221 as~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~g-------liySgS~Dr--------tIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEG-------LIYSGSQDR--------TIKVWRALDGKLCREL 284 (480)
T ss_pred ecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCc-------eEEecCCCc--------eEEEEEccchhHHHhh
Confidence 999999999999999999999998 999999999998752 444443332 3778877667778899
Q ss_pred CCCccccE--EEee
Q 000170 592 DGQKTGIV--LSAS 603 (1950)
Q Consensus 592 ~g~~~g~V--la~s 603 (1950)
.| |..+| ++++
T Consensus 285 kG-HahwvN~lals 297 (480)
T KOG0271|consen 285 KG-HAHWVNHLALS 297 (480)
T ss_pred cc-cchheeeeecc
Confidence 99 99998 4444
No 13
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=99.18 E-value=1.7e-10 Score=123.65 Aligned_cols=127 Identities=17% Similarity=0.368 Sum_probs=105.2
Q ss_pred cchHHHHHhhc--cCChhHHHhhHHHHHhhccccccccccccCCcccccccccccccccchhhHHHHhhcCcccccCCCc
Q 000170 1393 DEASHILSELR--SHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWVKYQSKGLGAYIERISDLPKFLSSNAV 1470 (1950)
Q Consensus 1393 ~~~~~IL~~L~--~~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~~~d~~~g~~~~~~~~~l~~Yle~L~~~p~~~~~~~~ 1470 (1950)
..+.+||..+. +.+..++.||+.++...
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-------------------------------------------------- 37 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-------------------------------------------------- 37 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC--------------------------------------------------
Confidence 45677888886 56889999999876421
Q ss_pred cccHHHHHHHHHHHhhcCchHHHHHHh-hCCCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhhHHHHHH
Q 000170 1471 HVTDDMIELYLELLCRYERDSVLKFLE-TFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELNDKFAALE 1549 (1950)
Q Consensus 1471 ~~~~~l~elYIeLLCqydP~~Vl~fLq-t~~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~~L~ 1549 (1950)
..+..++++|++++|+++|.++++||+ +.+.|++++++++|++++.+++++||+.|.|++.+|++++++.+.+
T Consensus 38 ~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d------ 111 (140)
T smart00299 38 SENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGN------ 111 (140)
T ss_pred ccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccC------
Confidence 023467889999999999999999999 7788999999999999999999999999999999999998765322
Q ss_pred HhhhccccccccCCCcccccccccchhhhhhhHHHHHHHHHHHhhhcCCCCCccchhHhHHHHHHHhcc
Q 000170 1550 TAVGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLNPEESEVLWFKLLDSFCE 1618 (1950)
Q Consensus 1550 ~~v~~~ls~~~s~~~~~~e~~~~~~~~~e~~~l~~~l~~AI~lCqr~s~~L~~ee~e~LWf~LLd~~i~ 1618 (1950)
.+.|+++|++.. +.++|..++..++.
T Consensus 112 ------------------------------------~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 112 ------------------------------------YEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred ------------------------------------HHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 357888998853 56899999998754
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.18 E-value=2.2e-09 Score=134.05 Aligned_cols=136 Identities=24% Similarity=0.285 Sum_probs=104.9
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
++-.++|+++++ ++||.|..||+|+|||... +.|+. +.+.|++.||++.|+..|..|++.+.||+|
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S---------gfC~v---TFteHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS---------GFCFV---TFTEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccC---------ceEEE---EeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 367789999997 5999999999999999743 34443 678899999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE-
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV- 599 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V- 599 (1950)
+.||++++.+.+|++..-...-.+|+--+. + -+++.++.+ +|- +.+|.+.+++-.-+|+| |-|+|
T Consensus 417 RAwDlkRYrNfRTft~P~p~QfscvavD~s-----G-elV~AG~~d------~F~-IfvWS~qTGqllDiLsG-HEgPVs 482 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-----G-ELVCAGAQD------SFE-IFVWSVQTGQLLDILSG-HEGPVS 482 (893)
T ss_pred EeeeecccceeeeecCCCceeeeEEEEcCC-----C-CEEEeeccc------eEE-EEEEEeecCeeeehhcC-CCCcce
Confidence 999999999999997333333344443332 2 244444443 222 55788888988899999 99999
Q ss_pred -EEeec
Q 000170 600 -LSASP 604 (1950)
Q Consensus 600 -la~sp 604 (1950)
|+|+|
T Consensus 483 ~l~f~~ 488 (893)
T KOG0291|consen 483 GLSFSP 488 (893)
T ss_pred eeEEcc
Confidence 45666
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.16 E-value=8.6e-11 Score=146.48 Aligned_cols=136 Identities=21% Similarity=0.259 Sum_probs=114.7
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+--.+.|+++++ +.||+|+.|.+..||++.+ . ..+ .+..+|+-.|+|+.|++..+.||+++.|++|
T Consensus 462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~---------~--~l~-~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv 529 (775)
T KOG0319|consen 462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ---------L--RLL-GVLSGHTRGVWCVSFSKNDQLLATCSGDKTV 529 (775)
T ss_pred hcccccceEecCCCceEEecccccceeeecccC---------c--eEE-EEeeCCccceEEEEeccccceeEeccCCceE
Confidence 334478888876 7999999999999999831 1 122 2567899999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vl 600 (1950)
+||.+.+..|++|+. ||+.+|..+.|..+ ...+||++..|. +|+|+.-+.+|.+.|++ |+..|-
T Consensus 530 KIW~is~fSClkT~e-GH~~aVlra~F~~~------~~qliS~~adGl--------iKlWnikt~eC~~tlD~-H~DrvW 593 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFE-GHTSAVLRASFIRN------GKQLISAGADGL--------IKLWNIKTNECEMTLDA-HNDRVW 593 (775)
T ss_pred EEEEeccceeeeeec-CccceeEeeeeeeC------CcEEEeccCCCc--------EEEEeccchhhhhhhhh-ccceeE
Confidence 999999999999997 99999999999964 468999999984 56677778889999999 999996
Q ss_pred Eeeccc
Q 000170 601 SASPLL 606 (1950)
Q Consensus 601 a~spLp 606 (1950)
+++--|
T Consensus 594 aL~~~~ 599 (775)
T KOG0319|consen 594 ALSVSP 599 (775)
T ss_pred EEeecC
Confidence 666544
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.9e-10 Score=146.63 Aligned_cols=122 Identities=19% Similarity=0.299 Sum_probs=95.5
Q ss_pred CcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.+.+++++ +.+++.|+.|++|+|||.+.. .+++. +..+|...|++++|+|+|+.+++|+.||+|+||
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~--------~~~~~---~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD--------GRNLK---TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCC--------CeEEE---EecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 35556655 579999999999999998431 12221 345799999999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee--EEeecCC
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK--TQCLLDG 593 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~--s~~ll~g 593 (1950)
|+.+|++.+++. +|..+|+.++|.++ ++.++.+ +.+| .+++|+..+.. +.+++.+
T Consensus 274 d~~~~~~~~~l~-~hs~~is~~~f~~d-----~~~l~s~-s~d~--------~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 274 DVRTGECVRKLK-GHSDGISGLAFSPD-----GNLLVSA-SYDG--------TIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred eccCCeEEEeee-ccCCceEEEEECCC-----CCEEEEc-CCCc--------cEEEEECCCCceeeeecccC
Confidence 999999999997 99999999999997 3444444 4454 35667666665 4456666
No 17
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.9e-12 Score=163.10 Aligned_cols=446 Identities=28% Similarity=0.403 Sum_probs=272.2
Q ss_pred ccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...|.++|+|++ |..++.|-.+|.|.+||...+ ...+.+. .-+..++|-++..- ..++..+.+++..|.
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------k~l~~i~--e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------KILKVIT--EHGAPVTGVIFVGR-TSQNSKLLTSDTGGS 198 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCC------cceeeee--ecCCccceEEEEEE-eCCCcEEEEccCCCc
Confidence 356778888887 589999999999999998321 1111111 12223444444444 345668999999997
Q ss_pred EEEEECCCCc-eee-------eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec
Q 000170 520 VTVWDVQRAS-AAK-------VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL 591 (1950)
Q Consensus 520 I~lWDl~~g~-~l~-------tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll 591 (1950)
+|.+.=.+ ++. -+..|-.+.|.++.=.++ |.-|+.-.+.|..+ ...
T Consensus 199 --f~~lv~nk~~L~~~~~kskcl~sg~~g~Vis~s~i~~-------------e~l~~~~v~hf~~v---------~L~-- 252 (1206)
T KOG2079|consen 199 --FWKLVFNKALLNMNTDKSKCLLSGKNGEVISASPISD-------------ENLGSLLVSHFGFV---------SLV-- 252 (1206)
T ss_pred --eEEEEechhhhcccchHHHHhhcCCCCceEecccCCc-------------chhhhhheeeeeEE---------Eee--
Confidence 77764222 221 112244456665543332 34333333333210 001
Q ss_pred CCCccccEEEeecccccccCCCCCCCCCCCCcccccccccccccccccCCcccccccCCCcccccEE-EEEeccEEEEEE
Q 000170 592 DGQKTGIVLSASPLLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVV-IFVTYQTALVVR 670 (1950)
Q Consensus 592 ~g~~~g~Vla~spLp~~~~~gs~~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glV-Al~T~~~~~IV~ 670 (1950)
..+.|+.+-|+-... ++ || +|+++..+-|+.+|..++..+.+.+ |..-..+++|.+
T Consensus 253 ---p~~sIvt~fPi~f~~-q~--pP-----------------a~v~~~~~~s~~ins~~ts~e~~~~ia~s~nNkL~v~s 309 (1206)
T KOG2079|consen 253 ---PLSSIVTLFPIKFMY-QK--PP-----------------AGVVGSGSHSKLINSDSTSVEEDVVIAASYNNKLVVKS 309 (1206)
T ss_pred ---cccceeeecceEEEE-ec--CC-----------------CceeccccceeeeeccccccccceEEEEEeCCeEEEEE
Confidence 112244444433211 00 00 3566666667888887777766654 555556677776
Q ss_pred eccCceeeeec-cCCCCCCCCCCCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeec--ceeEeeEEe
Q 000170 671 LTPTLEVYAQI-PRPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKS--ELKVYGKWS 747 (1950)
Q Consensus 671 l~P~~~v~~k~-~rP~~v~~~slp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~--~~~~~~~~~ 747 (1950)
+. ..+.+.+. +++...-++++++++|..-..- +...+....+..+...+.++|...++.+.++++ .++....|-
T Consensus 310 I~-~sn~~~ql~~~~~~efa~Silsi~W~~s~~i--~~ld~~~~l~~vd~~kl~i~~~~~I~d~~Lv~~~~~~ks~At~g 386 (1206)
T KOG2079|consen 310 IP-NSNFYAQLQPRREGEFAGSILSIHWRRSTGI--SILDNFSKLAEVDVSKLVIAWDRDIQDAKLVKSKYDIKSLATGG 386 (1206)
T ss_pred Ee-cccceEEEeeccccccccchhheeeeccccc--cccchhhhhcccchhhhhhhhhchhhhhccCCCchhhhhhhccc
Confidence 54 33444444 5565566789999999753111 111222233334455788899999998888876 567788898
Q ss_pred ccccceeeeeccCCeEEEEeecC---eEEEEecCCeEEEE--------eccccCCCCcccccccccc-cccccCCCcccc
Q 000170 748 LDSAAIGVAWLDDQMLVVLTLLG---QLYLYARDGTVIHQ--------TSFAVDGSQGYDLVGYRSY-FTNVFGNPEKSY 815 (1950)
Q Consensus 748 ~~~~I~~l~WLs~~iL~vLt~s~---~L~l~d~~~~~i~~--------t~~~~D~s~~~Dll~~~~~-f~~~~~n~~~af 815 (1950)
...+..++-|......+|-+... +++++..++..+.+ +.|.+++....|.+..+.+ |.+.++++.++|
T Consensus 387 ~vs~a~~~i~s~~c~s~Vts~t~~~g~llvl~e~~~~llq~y~~w~ern~f~~~~~~~~dv~ql~~~~y~~~lk~~~k~~ 466 (1206)
T KOG2079|consen 387 LVSPAFGVIGSFACYSVVTSRTGLKGHLLVLTEDGLVLLQPYCPWDERNNFSVAGLSGNDVIQLHTYFYTNSLKRLRKAY 466 (1206)
T ss_pred ccchHHHHHhhhhheeeeecccccccceeeeehhhHHHhccccchhhhhhhhhcccchhHHHHHHHHHHHHHHhhHHHhh
Confidence 89999888888887666554444 89999888777666 6678888888888888888 456888999999
Q ss_pred cceeeeeCcEEEEecCCcEEEEEecC------HHHHHHHHHHcCCHHHHHHHHHHhhcCccccccCCCCCHHHHHHHHHH
Q 000170 816 HNCVSVRGASIYVLGPMHLVVSRLLP------WKERIQVLRKAGDWMGALNMAMTLYDGQAHGVIDLPRTLDAVQEAIMP 889 (1950)
Q Consensus 816 ~nSv~~~~~~iflLg~~~l~vg~lls------W~drI~~Lv~~gd~~eAL~LA~~~Y~G~~~~ligLP~d~~~rr~~l~~ 889 (1950)
+++-++++-..+++|.-.-....++. |..|.+.+.-.+.|..+...+++.|.+.+.+++.+ ...+....+|.+
T Consensus 467 ~a~ea~~~~t~~~l~~v~~vls~~l~~vi~~~it~~sLdll~~~~we~l~~~s~~vfle~l~e~V~~-~tvtsisPvl~~ 545 (1206)
T KOG2079|consen 467 HASEAVSGLTVYYLGVVHRVLSRLLPTVISKLITERSLDLLREQDWEGLFNMSMSVFLEHLHEVVLL-KTVTSISPVLAP 545 (1206)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHhHHHhhcchhHHHHHHHHHHHHHh-cccCCCChHHHH
Confidence 98877777666666665555555666 88999999999999999999999999987766544 333334555655
Q ss_pred HHHHHHHH----HHHHHhhhhhHHHhhhHhhhhhcCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHH
Q 000170 890 YLVELLLS----YVDEVFSYISVAFCNQIEKLAQLNNPQSRSSTVHAEIKEQFTRVGGVAVEFCVHINRTDILFDDIFS 964 (1950)
Q Consensus 890 ~l~eil~~----~i~~~fs~lsla~~~~~~k~~~~~~~~~~~~~l~~~~~e~~~~l~~~~iefCl~i~~~D~LF~~if~ 964 (1950)
.+.+.+.. +++.. ..--+|.+.+-++.-..-+++...-++|..+|.++++++..+.+++.
T Consensus 546 sL~dy~~e~~l~~ie~l---------------Iv~le~~sLDld~vlki~kq~~lfd~liYv~~kafNDY~tplvell~ 609 (1206)
T KOG2079|consen 546 SLADYLLEEELKYIENL---------------IVTLEPSSLDLDVVLKICKQYNLFDGLIYVNNKAFNDYDTPLVELLS 609 (1206)
T ss_pred HHHHHHHhcCHHHHHhh---------------eeecCcccccHHHHHHHHHHhCCcceEEEEeeehhcccccHHHHHHH
Confidence 55544332 22211 11112322222221122234444444555566666666666666655
No 18
>PTZ00421 coronin; Provisional
Probab=99.12 E-value=8.3e-09 Score=132.18 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=99.5
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCC-CEEEEe
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPG-DLLLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG-~~LasG 514 (1950)
.+..+.|.+++++.++ ++||+|+.||+|++||+..+.- .......+. ...+|..+|++|+|+|++ .+||+|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~--~~~~~~~l~---~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL--TQNISDPIV---HLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc--ccccCcceE---EecCCCCcEEEEEeCcCCCCEEEEE
Confidence 4566788899999975 6899999999999999843100 000001111 235689999999999986 699999
Q ss_pred cCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 515 YADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
+.||+|+|||+.+++.+..+. +|...|.+++|+++ +..++.++. +|. +++|+..+.+....+.+
T Consensus 145 s~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~spd-----G~lLatgs~-Dg~--------IrIwD~rsg~~v~tl~~- 208 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEVIK-CHSDQITSLEWNLD-----GSLLCTTSK-DKK--------LNIIDPRDGTIVSSVEA- 208 (493)
T ss_pred eCCCEEEEEECCCCeEEEEEc-CCCCceEEEEEECC-----CCEEEEecC-CCE--------EEEEECCCCcEEEEEec-
Confidence 999999999999999988886 89999999999987 344444444 443 45666544444444445
Q ss_pred ccc
Q 000170 595 KTG 597 (1950)
Q Consensus 595 ~~g 597 (1950)
|.+
T Consensus 209 H~~ 211 (493)
T PTZ00421 209 HAS 211 (493)
T ss_pred CCC
Confidence 443
No 19
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.9e-11 Score=136.66 Aligned_cols=130 Identities=19% Similarity=0.272 Sum_probs=97.9
Q ss_pred cEEEEE--cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC----CCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 447 PQVLAV--HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD----RSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 447 pt~ia~--s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~----~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
|.|..+ +++|+++|+.||.|-|||+-.+--. | -+..+.. -+..+|.||+||.|..+||+|+.||.|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr------K--DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR------K--DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhh------h--hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 555444 4699999999999999997332100 0 0111111 157899999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
++|-+.+|.|++.+..+|+..|+++.|+.|+ ..++|+..+-.|..|.. -++++.+=|.| |.+.|
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~------SqiLS~sfD~tvRiHGl--------KSGK~LKEfrG-HsSyv 351 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDN------SQILSASFDQTVRIHGL--------KSGKCLKEFRG-HSSYV 351 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCc------chhhcccccceEEEecc--------ccchhHHHhcC-ccccc
Confidence 9999999999999988999999999999873 34555555545555553 46777788888 77666
No 20
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.09 E-value=3.2e-10 Score=129.36 Aligned_cols=139 Identities=19% Similarity=0.339 Sum_probs=107.0
Q ss_pred HHHhhhccccc--cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC
Q 000170 432 TQTIASQAFRR--DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP 507 (1950)
Q Consensus 432 S~~i~s~~f~~--~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D 507 (1950)
|+.-...+||. +.-.+.||.++| .||++||.+-++++||+.+ ..|+.-.++.++|.++|+++.+|+.
T Consensus 202 sK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T---------~QcfvsanPd~qht~ai~~V~Ys~t 272 (430)
T KOG0640|consen 202 SKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT---------YQCFVSANPDDQHTGAITQVRYSST 272 (430)
T ss_pred ccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc---------eeEeeecCcccccccceeEEEecCC
Confidence 33333445544 555678988885 8999999999999999843 2355555567789999999999999
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeeccCcC-CCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee
Q 000170 508 GDLLLAGYADGHVTVWDVQRASAAKVITGEHT-SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK 586 (1950)
Q Consensus 508 G~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~-~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~ 586 (1950)
|++-++|+.||.|+|||-.+++|++++..+|. +.|+++.|+.+ +..++.|+-++ .++||-.-+++
T Consensus 273 ~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn-----~kyiLsSG~DS---------~vkLWEi~t~R 338 (430)
T KOG0640|consen 273 GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN-----GKYILSSGKDS---------TVKLWEISTGR 338 (430)
T ss_pred ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC-----CeEEeecCCcc---------eeeeeeecCCc
Confidence 99999999999999999999999999998995 78999999987 34556655443 25566544555
Q ss_pred EEeecCC
Q 000170 587 TQCLLDG 593 (1950)
Q Consensus 587 s~~ll~g 593 (1950)
+.+.+.|
T Consensus 339 ~l~~YtG 345 (430)
T KOG0640|consen 339 MLKEYTG 345 (430)
T ss_pred eEEEEec
Confidence 5554544
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.08 E-value=3.2e-08 Score=113.17 Aligned_cols=116 Identities=19% Similarity=0.339 Sum_probs=90.6
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
++.+.+.++|++.++ ++|++|+.+|.|.+||...+ . ... ....|..+|+++.|++++++|++|+.+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-------~--~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-------E--LLR---TLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-------C--cEE---EEecCCcceeEEEECCCCCEEEEEcCC
Confidence 445567789999987 79999999999999998431 1 111 123477889999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|.|++||+.+++....+. +|...|.++.|.++ + ..++++..+|.+..+..
T Consensus 73 ~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~-~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 73 KTIRLWDLETGECVRTLT-GHTSYVSSVAFSPD-----G-RILSSSSRDKTIKVWDV 122 (289)
T ss_pred CeEEEEEcCcccceEEEe-ccCCcEEEEEEcCC-----C-CEEEEecCCCeEEEEEC
Confidence 999999999988887776 89899999999975 2 35555555566655553
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.08 E-value=1e-08 Score=120.10 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=95.4
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|..+.+++-|++.+| +++|+|+.|-.-.+|+...+ ...+ ...+|..+|+|+.||.||++||+|..
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g---------e~~~---eltgHKDSVt~~~FshdgtlLATGdm 126 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG---------EFAG---ELTGHKDSVTCCSFSHDGTLLATGDM 126 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC---------ccee---EecCCCCceEEEEEccCceEEEecCC
Confidence 5667788888888876 78999999999999998432 1122 44679999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+|.|+||++.+|....++. .--..|.=+.|.|- --.+..++.+|.||.++..
T Consensus 127 sG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~------a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 127 SGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPR------AHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred CccEEEEEcccCceEEEee-cccCceEEEEeccc------ccEEEeecCCCcEEEEECC
Confidence 9999999999999877774 44567777888873 3456667788999999875
No 23
>PTZ00420 coronin; Provisional
Probab=99.07 E-value=1.2e-08 Score=131.79 Aligned_cols=140 Identities=12% Similarity=0.068 Sum_probs=98.8
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE-EEEe
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL-LLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~-LasG 514 (1950)
.++.+.+.+++++.++ .+||+|+.||+|+|||+..+..... .....+. ...+|.+.|++++|+|++.. ||+|
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-~i~~p~~---~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-EIKDPQC---ILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-ccccceE---EeecCCCcEEEEEECCCCCeEEEEE
Confidence 4556678899999985 5899999999999999853100000 0000011 23468899999999999986 5799
Q ss_pred cCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 515 YADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
+.||+|+|||+.+++....+. |...|.+++|+++ +..++.++.++ .+++|+..+.+....+.|
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~--~~~~V~Slswspd-----G~lLat~s~D~---------~IrIwD~Rsg~~i~tl~g- 207 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIK-----GNLLSGTCVGK---------HMHIIDPRKQEIASSFHI- 207 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCC-----CCEEEEEecCC---------EEEEEECCCCcEEEEEec-
Confidence 999999999999999877763 6678999999987 34555555443 256666555554455666
Q ss_pred ccccE
Q 000170 595 KTGIV 599 (1950)
Q Consensus 595 ~~g~V 599 (1950)
|.+.+
T Consensus 208 H~g~~ 212 (568)
T PTZ00420 208 HDGGK 212 (568)
T ss_pred ccCCc
Confidence 66544
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1e-09 Score=140.13 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=104.3
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.-+++|+.++ +.++|.++.++.|++|+.... +...+ ....+|+..|+.++|||||+++++|+.|++|+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~---------~~~~~-~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI---------KSNLL-RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccc---------cchhh-ccccccccceeeeEECCCCcEEEEecCCceEE
Confidence 3456776666 489999999999999987211 10011 13357999999999999999999999999999
Q ss_pred EEEC-CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEE
Q 000170 522 VWDV-QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 522 lWDl-~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vl 600 (1950)
+||+ ..+.+++++. ||...|++++|.++ ++ .++|+..+| + +|+|++.++++.+.|.| |.+.|.
T Consensus 229 iwd~~~~~~~~~~l~-gH~~~v~~~~f~p~-----g~-~i~Sgs~D~-------t-vriWd~~~~~~~~~l~~-hs~~is 292 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLK-GHSTYVTSVAFSPD-----GN-LLVSGSDDG-------T-VRIWDVRTGECVRKLKG-HSDGIS 292 (456)
T ss_pred EeeccCCCeEEEEec-CCCCceEEEEecCC-----CC-EEEEecCCC-------c-EEEEeccCCeEEEeeec-cCCceE
Confidence 9999 6678999998 99999999999997 44 444444443 3 67787777889999999 888874
Q ss_pred Eee
Q 000170 601 SAS 603 (1950)
Q Consensus 601 a~s 603 (1950)
+++
T Consensus 293 ~~~ 295 (456)
T KOG0266|consen 293 GLA 295 (456)
T ss_pred EEE
Confidence 443
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2.6e-08 Score=122.51 Aligned_cols=134 Identities=19% Similarity=0.265 Sum_probs=105.4
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
-..++-+..|+..=+..+ .|..+.-.+.+++++| +..|+++=|++|+||.+.++ . +. .+.
T Consensus 117 DDm~iKlW~we~~wa~~q-----tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-------~--~n---fTl 179 (794)
T KOG0276|consen 117 DDMTIKLWDWENEWACEQ-----TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-------H--PN---FTL 179 (794)
T ss_pred CccEEEEeeccCceeeee-----EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-------C--Cc---eee
Confidence 455666777755444333 4666666789999997 68999999999999998542 1 11 245
Q ss_pred CCCCCCeEEEEEcCCCC--EEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 493 DRSPAPVTAMCFNQPGD--LLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~--~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
++|...|.||+|=+-|. ||++|+.|-+|++||.++.+|++|+. ||+.-|..+.|.|. -.+++++.++|.|-
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~------lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPE------LPIIISGSEDGTVR 252 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCC------CcEEEEecCCccEE
Confidence 67999999999987664 99999999999999999999999997 99999999999984 45788888887554
Q ss_pred EEc
Q 000170 571 LHS 573 (1950)
Q Consensus 571 ~h~ 573 (1950)
+++
T Consensus 253 iWh 255 (794)
T KOG0276|consen 253 IWN 255 (794)
T ss_pred Eec
Confidence 443
No 26
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.01 E-value=1.5e-09 Score=128.79 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=113.8
Q ss_pred ccccccCCCcEEEEEcCC----EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE
Q 000170 438 QAFRRDHGSPQVLAVHPS----FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 438 ~~f~~~~G~pt~ia~s~~----~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las 513 (1950)
+.|+.+.+.+.++.++|. -+|+|+.||+|++|++.. .. .++ +.++|...|..++|.|+|++|++
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~-------e~----~l~-~l~gH~~RVs~VafHPsG~~L~T 278 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ-------ET----PLQ-DLEGHLARVSRVAFHPSGKFLGT 278 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC-------Cc----chh-hhhcchhhheeeeecCCCceeee
Confidence 367888999999999873 699999999999998732 11 122 45678999999999999999999
Q ss_pred ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 514 GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
|+-|-+=+|||+.+++.+.-. .||...|.+++|.+||+ .++.+|-+. ..|+|+.++++|--.|.|
T Consensus 279 asfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS-----L~~tGGlD~---------~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS-----LAATGGLDS---------LGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred cccccchhhcccccchhhHhh-cccccccceeEecCCCc-----eeeccCccc---------hhheeecccCcEEEEecc
Confidence 999999999999999876544 49999999999999842 344444332 357899999999999999
Q ss_pred CccccEEEeeccc
Q 000170 594 QKTGIVLSASPLL 606 (1950)
Q Consensus 594 ~~~g~Vla~spLp 606 (1950)
|..+|++++--|
T Consensus 344 -H~k~I~~V~fsP 355 (459)
T KOG0272|consen 344 -HIKEILSVAFSP 355 (459)
T ss_pred -cccceeeEeECC
Confidence 999996554433
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.99 E-value=4.3e-08 Score=117.85 Aligned_cols=132 Identities=16% Similarity=0.253 Sum_probs=106.6
Q ss_pred CCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
-.+||++=+ |+.||+|..+|.+++|+.-. ..+ .+...|.|||.+|.|+.+|+||++|+.||++.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G----------~l~---~tl~~HkgPI~slKWnk~G~yilS~~vD~ttil 302 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG----------NLI---STLGQHKGPIFSLKWNKKGTYILSGGVDGTTIL 302 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc----------hhh---hhhhccCCceEEEEEcCCCCEEEeccCCccEEE
Confidence 357999998 79999999999999998622 111 144569999999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEe
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSA 602 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~ 602 (1950)
||..+|++.+.+. -|..+-..|.|..+ ...++++.+|.++..... .-+-.+.|.| |.|+|.++
T Consensus 303 wd~~~g~~~q~f~-~~s~~~lDVdW~~~-------~~F~ts~td~~i~V~kv~--------~~~P~~t~~G-H~g~V~al 365 (524)
T KOG0273|consen 303 WDAHTGTVKQQFE-FHSAPALDVDWQSN-------DEFATSSTDGCIHVCKVG--------EDRPVKTFIG-HHGEVNAL 365 (524)
T ss_pred EeccCceEEEeee-eccCCccceEEecC-------ceEeecCCCceEEEEEec--------CCCcceeeec-ccCceEEE
Confidence 9999999988886 88888789999964 478888888877776543 1123567889 99999766
Q ss_pred eccc
Q 000170 603 SPLL 606 (1950)
Q Consensus 603 spLp 606 (1950)
.--|
T Consensus 366 k~n~ 369 (524)
T KOG0273|consen 366 KWNP 369 (524)
T ss_pred EECC
Confidence 5544
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.99 E-value=1.3e-09 Score=137.65 Aligned_cols=136 Identities=17% Similarity=0.240 Sum_probs=113.6
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
..+.|.|-.+.++| +||.+++.|++|++|.+.. . .+++ .-.+|..||+.+.|+|-|-|.|+|+.|+
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-------~--s~~V---~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-------W--SCLV---IYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeeccc-------c--eeEE---EecCCCcceeeEEecCCceEEEecCCCc
Confidence 34566665555554 8999999999999999843 1 2333 2246999999999999999999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcccc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGI 598 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~ 598 (1950)
+-+||....-+.++.+. ||.+-|.++.|.|+ ++.++-+++++ | +|+|++.++.+.++|.| |.++
T Consensus 516 tArLWs~d~~~PlRifa-ghlsDV~cv~FHPN-----s~Y~aTGSsD~--------t-VRlWDv~~G~~VRiF~G-H~~~ 579 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFA-GHLSDVDCVSFHPN-----SNYVATGSSDR--------T-VRLWDVSTGNSVRIFTG-HKGP 579 (707)
T ss_pred eeeeeecccCCchhhhc-ccccccceEEECCc-----ccccccCCCCc--------e-EEEEEcCCCcEEEEecC-CCCc
Confidence 99999999999999887 99999999999996 66777777776 4 89999999999999999 9999
Q ss_pred E--EEeec
Q 000170 599 V--LSASP 604 (1950)
Q Consensus 599 V--la~sp 604 (1950)
| ++++|
T Consensus 580 V~al~~Sp 587 (707)
T KOG0263|consen 580 VTALAFSP 587 (707)
T ss_pred eEEEEEcC
Confidence 8 56666
No 29
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.98 E-value=1.2e-09 Score=122.28 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=96.8
Q ss_pred EecCChhH-HHHhhhccccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEE
Q 000170 424 DVDANNTI-TQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAM 502 (1950)
Q Consensus 424 ~~~~~~~i-S~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsL 502 (1950)
.|+...++ +++|..++-.++. .+|.+.+.+||+|. ..+|++||+.++ +...+. +.++|+..|+++
T Consensus 24 fWqa~tG~C~rTiqh~dsqVNr---LeiTpdk~~LAaa~-~qhvRlyD~~S~-----np~Pv~-----t~e~h~kNVtaV 89 (311)
T KOG0315|consen 24 FWQALTGICSRTIQHPDSQVNR---LEITPDKKDLAAAG-NQHVRLYDLNSN-----NPNPVA-----TFEGHTKNVTAV 89 (311)
T ss_pred eeehhcCeEEEEEecCccceee---EEEcCCcchhhhcc-CCeeEEEEccCC-----CCCcee-----EEeccCCceEEE
Confidence 45444444 5555544332222 44555568899885 568999999753 122222 235689999999
Q ss_pred EEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 503 CFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 503 afS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.|-.||+|+.+|++||+++|||+....|.+.+ .|.++|+.|...|. ++.++++|.+|.|+.+.+
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpn------QteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPN------QTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCC------cceEEeecCCCcEEEEEc
Confidence 99999999999999999999999999998888 58899999999974 789999999996665543
No 30
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.9e-09 Score=123.67 Aligned_cols=94 Identities=22% Similarity=0.395 Sum_probs=80.4
Q ss_pred cCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+.+..+|+.++ |.++|+|..+|.|+|||+-+. ..+....+|..||+|||||+||..|++++.|..|
T Consensus 22 d~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 22 DNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cCCccceEEeccCcceeeeeccCCcEEEEEcccc------------chhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 45557899888 489999999999999998431 1122345699999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.+||+.+|.+++.+ ...++|+.+.|.|-
T Consensus 90 ~lwDl~~gs~l~ri--rf~spv~~~q~hp~ 117 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRI--RFDSPVWGAQWHPR 117 (405)
T ss_pred EEEeccCCCceeEE--EccCccceeeeccc
Confidence 99999999999888 47899999999985
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.95 E-value=3.7e-09 Score=120.29 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=98.4
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS 529 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~ 529 (1950)
+...++|..+|+.||++++||+..+ ++.. ...+|..-|.+++||+|.+.+++|+.|.+|++||+. |.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g---------~~t~---~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ 137 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATG---------ESTR---RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GV 137 (315)
T ss_pred EccCCceEEeccccceEEEEEecCC---------cEEE---EEEecCCceEEEEecCCCceeecCCCcceeeeeeec-cc
Confidence 4445689999999999999998542 1121 223588999999999999999999999999999987 55
Q ss_pred eeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE--EEeec
Q 000170 530 AAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV--LSASP 604 (1950)
Q Consensus 530 ~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V--la~sp 604 (1950)
|..++.+ .|...|++|.|+|. +.+..++++-.++ .+|+|+-..++-...+-| |.+.| ++++|
T Consensus 138 ck~t~~~~~~~~WVscvrfsP~----~~~p~Ivs~s~Dk--------tvKvWnl~~~~l~~~~~g-h~~~v~t~~vSp 202 (315)
T KOG0279|consen 138 CKYTIHEDSHREWVSCVRFSPN----ESNPIIVSASWDK--------TVKVWNLRNCQLRTTFIG-HSGYVNTVTVSP 202 (315)
T ss_pred EEEEEecCCCcCcEEEEEEcCC----CCCcEEEEccCCc--------eEEEEccCCcchhhcccc-ccccEEEEEECC
Confidence 6566653 45899999999997 3355566655543 367787777777778888 99988 55555
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.94 E-value=8.9e-09 Score=119.88 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=119.6
Q ss_pred EecCChhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEE
Q 000170 424 DVDANNTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTA 501 (1950)
Q Consensus 424 ~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~Vts 501 (1950)
+|..--++++-|+ ..-|=+.|+++.| .++|+|+.|++|.|||+.++ ++. .+.++|-..|..
T Consensus 136 eWHapwKl~rVi~-----gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----------~Lk--ltltGhi~~vr~ 198 (460)
T KOG0285|consen 136 EWHAPWKLYRVIS-----GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----------QLK--LTLTGHIETVRG 198 (460)
T ss_pred cccCcceehhhhh-----hccceEEEEeeCCCceeEEecCCCceeEEEEcccC----------eEE--Eeecchhheeee
Confidence 4555555666554 4578899999997 79999999999999999653 122 255679999999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccc
Q 000170 502 MCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 502 LafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~ 581 (1950)
++||+-+.||.+++.|+.|+-||+...+.++.+. ||-++|.++...|- -..++.++-+. ..|+|+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPT-----ldvl~t~grDs---------t~RvWD 263 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPT-----LDVLVTGGRDS---------TIRVWD 263 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEecccc-----ceeEEecCCcc---------eEEEee
Confidence 9999999999999999999999999999999887 99999999999873 22333333332 478999
Q ss_pred ceeeeEEeecCCCccccEEEeeccc
Q 000170 582 RFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 582 ~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
.++-..-.+|.| |++.|.....-|
T Consensus 264 iRtr~~V~~l~G-H~~~V~~V~~~~ 287 (460)
T KOG0285|consen 264 IRTRASVHVLSG-HTNPVASVMCQP 287 (460)
T ss_pred ecccceEEEecC-CCCcceeEEeec
Confidence 888778889999 999996555544
No 33
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.94 E-value=2.5e-08 Score=115.15 Aligned_cols=233 Identities=16% Similarity=0.197 Sum_probs=142.9
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeec--ccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG--LLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~--~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
|++||....|+-|++.-.+... ....+..+. .....|.++|||||. +|.|+|+|+.|.+|+|||+.+.+.+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~--~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGC--TDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCcccc--ccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce
Confidence 7899999999999885432111 111112111 133579999999997 8999999999999999999999988888
Q ss_pred ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecccccccCCCC
Q 000170 535 TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLLFDESCGGA 614 (1950)
Q Consensus 535 ~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp~~~~~gs~ 614 (1950)
. .|.+.|+.+.|.+.- ....++++-++|.+..+.. +-| ++.+.|.+ |.+.|-.++..|
T Consensus 80 l-~HagsitaL~F~~~~----S~shLlS~sdDG~i~iw~~---~~W-----~~~~slK~-H~~~Vt~lsiHP-------- 137 (362)
T KOG0294|consen 80 L-SHAGSITALKFYPPL----SKSHLLSGSDDGHIIIWRV---GSW-----ELLKSLKA-HKGQVTDLSIHP-------- 137 (362)
T ss_pred e-ccccceEEEEecCCc----chhheeeecCCCcEEEEEc---CCe-----EEeeeecc-cccccceeEecC--------
Confidence 6 899999999999862 1125666666676666542 334 35566777 888884444433
Q ss_pred CCCCCCCCcccccccccccccccccCCcccccccCCCcccccEEEEEeccEEEEEEeccCceeeeeccCCCCCCCCCCCc
Q 000170 615 PLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTYQTALVVRLTPTLEVYAQIPRPDGVREGAMPY 694 (1950)
Q Consensus 615 ~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~T~~~~~IV~l~P~~~v~~k~~rP~~v~~~slp~ 694 (1950)
++.++.- ||+|-.-- +--|++....+|..++..+. .
T Consensus 138 -----------S~KLALs----Vg~D~~lr------------~WNLV~Gr~a~v~~L~~~at-----------------~ 173 (362)
T KOG0294|consen 138 -----------SGKLALS----VGGDQVLR------------TWNLVRGRVAFVLNLKNKAT-----------------L 173 (362)
T ss_pred -----------CCceEEE----EcCCceee------------eehhhcCccceeeccCCcce-----------------e
Confidence 2333311 23331100 11122223233333222211 1
Q ss_pred cccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeecceeEeeEEeccccceeeeeccCCeEEEEeecCeEEE
Q 000170 695 TAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYL 774 (1950)
Q Consensus 695 laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~~~~~~~~~~~~~~I~~l~WLs~~iL~vLt~s~~L~l 774 (1950)
+.|.... --.++.--|.|-++++.. -...++...+-.|..+.|++.+.|.|=-.++.+.+
T Consensus 174 v~w~~~G------------------d~F~v~~~~~i~i~q~d~--A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 174 VSWSPQG------------------DHFVVSGRNKIDIYQLDN--ASVFREIENPKRILCATFLDGSELLVGGDNEWISL 233 (362)
T ss_pred eEEcCCC------------------CEEEEEeccEEEEEeccc--HhHhhhhhccccceeeeecCCceEEEecCCceEEE
Confidence 4564310 124455556666665411 12233444456689999999999988887888888
Q ss_pred EecCC
Q 000170 775 YARDG 779 (1950)
Q Consensus 775 ~d~~~ 779 (1950)
+|.+.
T Consensus 234 ~D~ds 238 (362)
T KOG0294|consen 234 KDTDS 238 (362)
T ss_pred eccCC
Confidence 88653
No 34
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.94 E-value=4.9e-09 Score=119.29 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCcEEEEEcCC----EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 444 HGSPQVLAVHPS----FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 444 ~G~pt~ia~s~~----~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
.+=++|+.++|+ +|+.++.|++|++||++. .+.+ ....+|++-|+.+++||||+..|+|+.||.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-------~~l~-----~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-------CQLR-----TTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-------cchh-----hccccccccEEEEEECCCCCEEecCCCCce
Confidence 344899999884 799999999999999842 2222 233569999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+.|||+..++++.++ +|...|.+++|+|. |..+....+.+
T Consensus 216 ~~LwdL~~~k~lysl--~a~~~v~sl~fspn-----rywL~~at~~s 255 (315)
T KOG0279|consen 216 AMLWDLNEGKNLYSL--EAFDIVNSLCFSPN-----RYWLCAATATS 255 (315)
T ss_pred EEEEEccCCceeEec--cCCCeEeeEEecCC-----ceeEeeccCCc
Confidence 999999999998888 79999999999985 66666666665
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=3.5e-09 Score=133.58 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=119.9
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
....+..+++|| -+|.++--.|.|.+||++.+ .++ ...+.|.|||+.|+|.|++-..+||+.|-.|
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-----------tli-~rFdeHdGpVRgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-----------TLI-DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhh-----------hHH-hhhhccCCccceeeecCCCCeEEecCCccEE
Confidence 344566788887 58999999999999998632 222 2456799999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vl 600 (1950)
++|+..+.+|+.++. ||-.-|..+.|.+. -...+.++|++ | +|+|+..+.+|-++|.| |...|.
T Consensus 76 kVWnYk~rrclftL~-GHlDYVRt~~FHhe-----yPWIlSASDDQ--------T-IrIWNwqsr~~iavltG-HnHYVM 139 (1202)
T KOG0292|consen 76 KVWNYKTRRCLFTLL-GHLDYVRTVFFHHE-----YPWILSASDDQ--------T-IRIWNWQSRKCIAVLTG-HNHYVM 139 (1202)
T ss_pred EEEecccceehhhhc-cccceeEEeeccCC-----CceEEEccCCC--------e-EEEEeccCCceEEEEec-CceEEE
Confidence 999999999999997 99999999999984 56788888987 5 89999888999999999 999998
Q ss_pred EeecccccccC
Q 000170 601 SASPLLFDESC 611 (1950)
Q Consensus 601 a~spLp~~~~~ 611 (1950)
+..-+|.++.+
T Consensus 140 cAqFhptEDlI 150 (1202)
T KOG0292|consen 140 CAQFHPTEDLI 150 (1202)
T ss_pred eeccCCccceE
Confidence 77777755543
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.5e-09 Score=131.09 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=115.8
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~ 515 (1950)
.|..+.-.+.||++|| -|+.+++.|-+|++||+.. ...|.. +.++|..-|-+|+|+| |-.+.|+|+
T Consensus 92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~--------~wa~~q---tfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN--------EWACEQ---TFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EeeccccceeeeeecCCCCeEEecCCccEEEEeeccC--------ceeeee---EEcCcceEEEEEEecCCCccceeeee
Confidence 4555666689999998 5899999999999999832 112111 3467999999999998 677999999
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
.|++|++|.+....+..|+. ||...|.+|.|.+.+ .+..++.++|+. + +++|+..+-.|-.+|.| |
T Consensus 161 LDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~g---dkpylIsgaDD~--------t-iKvWDyQtk~CV~TLeG-H 226 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGG---DKPYLISGADDL--------T-IKVWDYQTKSCVQTLEG-H 226 (794)
T ss_pred ccccEEEEEcCCCCCceeee-ccccCcceEEeccCC---CcceEEecCCCc--------e-EEEeecchHHHHHHhhc-c
Confidence 99999999999999999997 999999999998763 345666666775 3 78999777778889999 9
Q ss_pred cccEEEeeccc
Q 000170 596 TGIVLSASPLL 606 (1950)
Q Consensus 596 ~g~Vla~spLp 606 (1950)
+..|-..+++|
T Consensus 227 t~Nvs~v~fhp 237 (794)
T KOG0276|consen 227 TNNVSFVFFHP 237 (794)
T ss_pred cccceEEEecC
Confidence 99986666665
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.93 E-value=3.9e-09 Score=127.83 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=85.2
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
++|+|+++ +++|||..||.|+||.+... ....+ .....|.++||+|+|||||+|||+|.+.+.|.+||
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~-----~l~ee-----~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd 515 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGD-----ELKEE-----AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYD 515 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCC-----cccce-----eeeecccCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence 57888886 89999999999999998431 11001 12245999999999999999999999999999999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
+++++.....+.-|+++|.+++|+|+. .+.+.-|.|..-.||.
T Consensus 516 ~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 516 VASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYS 558 (603)
T ss_pred cccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEE
Confidence 999998666666799999999999972 3333334465533333
No 38
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.90 E-value=1.8e-08 Score=131.22 Aligned_cols=118 Identities=16% Similarity=0.230 Sum_probs=94.3
Q ss_pred ccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCC-CC-----C---ccCcccceeeeecccCCCCCCCeEEEEEcCCC
Q 000170 440 FRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKY-SA-----H---HRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPG 508 (1950)
Q Consensus 440 f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~-~~-----~---~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG 508 (1950)
...+.|+++|+-.+ |.|+|+|+.|+.|.||.... +. . +.+-..-++.+ ...+|.+-|.-++||||+
T Consensus 65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~---~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVS---ILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEE---EEecCCCccceeccCCCc
Confidence 35689999998665 58999999999999999862 00 0 00001111111 234699999999999999
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 509 DLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 509 ~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
.+||+++.|++|.|||..+.++++++. +|.+.|-.|.|-|- +++.+.-+||+
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~-----Gky~ASqsdDr 193 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPI-----GKYFASQSDDR 193 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeee-cccccccceEECCc-----cCeeeeecCCc
Confidence 999999999999999999999999996 99999999999985 67888888887
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.88 E-value=3.3e-07 Score=104.86 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=86.2
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..+.++++...+ ++|++|+.+|.|.+||...+ .. .. ....|.+.|++++|++++.++++|+.+|.|
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------~~---~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 117 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------EC---VR---TLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------cc---eE---EEeccCCcEEEEEEcCCCCEEEEecCCCeE
Confidence 344556777765 58999999999999998431 11 11 123467799999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.+||+.+++....+. .|...|.++.|.++ + ..++++..+|.|..+..
T Consensus 118 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~-~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 118 KVWDVETGKCLTTLR-GHTDWVNSVAFSPD-----G-TFVASSSQDGTIKLWDL 164 (289)
T ss_pred EEEECCCcEEEEEec-cCCCcEEEEEEcCc-----C-CEEEEEcCCCcEEEEEc
Confidence 999999999888886 89999999999985 2 35555555565555543
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.88 E-value=3.7e-08 Score=114.82 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=112.1
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
.-..+.-++++. -|+.++..++.|..||+.++ +.+. .-.+|-+.|.||+.-|--..|++|+.|-+|
T Consensus 192 hi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n---------kvIR---~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 192 HIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN---------KVIR---HYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred hhheeeeeeecccCceEEEecCCCeeEEEechhh---------hhHH---HhccccceeEEEeccccceeEEecCCcceE
Confidence 444567788886 69999999999999999542 2222 124688999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vl 600 (1950)
++||+.+...+.++. ||..+|.+|.|.+-++ .++++.-++ | +|||+...+++-+.+.. |.-.|.
T Consensus 260 RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp------qvit~S~D~-------t-vrlWDl~agkt~~tlt~-hkksvr 323 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLS-GHTNPVASVMCQPTDP------QVITGSHDS-------T-VRLWDLRAGKTMITLTH-HKKSVR 323 (460)
T ss_pred EEeeecccceEEEec-CCCCcceeEEeecCCC------ceEEecCCc-------e-EEEeeeccCceeEeeec-ccceee
Confidence 999999999999997 9999999999997543 344443332 3 78898888888888887 877887
Q ss_pred EeecccccccCCCC
Q 000170 601 SASPLLFDESCGGA 614 (1950)
Q Consensus 601 a~spLp~~~~~gs~ 614 (1950)
+++-.|-...+.|+
T Consensus 324 al~lhP~e~~fASa 337 (460)
T KOG0285|consen 324 ALCLHPKENLFASA 337 (460)
T ss_pred EEecCCchhhhhcc
Confidence 77766643334443
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.88 E-value=3.9e-07 Score=124.38 Aligned_cols=121 Identities=19% Similarity=0.257 Sum_probs=86.2
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCC
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADG 518 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG 518 (1950)
...+.++++++++ +++|+|+.+|.|+|||...... +......... . -.+.++|++++|++ ++.+||+|+.||
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~--~~~~~~~~~~--~-~~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIK--DGRDIHYPVV--E-LASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccc--cccccccceE--E-ecccCceeeEEeccCCCCEEEEEeCCC
Confidence 3566688898875 8999999999999999742100 0000000000 0 12357899999987 589999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+|++||+.+++.+..+. +|...|++++|++. ....++++..+|.|.++.
T Consensus 556 ~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~-----~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 556 VVQVWDVARSQLVTEMK-EHEKRVWSIDYSSA-----DPTLLASGSDDGSVKLWS 604 (793)
T ss_pred eEEEEECCCCeEEEEec-CCCCCEEEEEEcCC-----CCCEEEEEcCCCEEEEEE
Confidence 99999999999988886 99999999999963 123555555555554444
No 42
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=6.2e-08 Score=117.30 Aligned_cols=222 Identities=18% Similarity=0.193 Sum_probs=141.0
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEEEECCCC
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g 528 (1950)
+--+|.++|.|...|+|.|||.+. +.+.. +..+|+.||..+-|+|+ +++|++|+.|+.+++||+.++
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~----------r~iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKS----------RVILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred eecCCeEEEccCCcCcEEEecccc----------HHHHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 344589999999999999999743 12221 44679999999999985 678999999999999999999
Q ss_pred ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeeccccc
Q 000170 529 SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLLFD 608 (1950)
Q Consensus 529 ~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp~~ 608 (1950)
.+...+. +|+..|.+..|++. ++|.++.++-++ ++|+|+..+-. ..+..=+|--+|=++.+||
T Consensus 144 ~v~~~l~-~htDYVR~g~~~~~----~~hivvtGsYDg---------~vrl~DtR~~~-~~v~elnhg~pVe~vl~lp-- 206 (487)
T KOG0310|consen 144 YVQAELS-GHTDYVRCGDISPA----NDHIVVTGSYDG---------KVRLWDTRSLT-SRVVELNHGCPVESVLALP-- 206 (487)
T ss_pred EEEEEec-CCcceeEeeccccC----CCeEEEecCCCc---------eEEEEEeccCC-ceeEEecCCCceeeEEEcC--
Confidence 9855665 99999999999986 466666666554 36777643321 1211111222333333443
Q ss_pred ccCCCCCCCCCCCCcccccccccccccccccCCcccccccCCCcccccEEEEEeccEEEEEEeccCceeeeeccCCCCCC
Q 000170 609 ESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTYQTALVVRLTPTLEVYAQIPRPDGVR 688 (1950)
Q Consensus 609 ~~~gs~~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~T~~~~~IV~l~P~~~v~~k~~rP~~v~ 688 (1950)
+. ..++-+--|.++||=-+..-..+.
T Consensus 207 -----------------------------------------------------sg-s~iasAgGn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 207 -----------------------------------------------------SG-SLIASAGGNSVKVWDLTTGGQLLT 232 (487)
T ss_pred -----------------------------------------------------CC-CEEEEcCCCeEEEEEecCCceehh
Confidence 00 111222234555553221100000
Q ss_pred --C---CCCCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeecceeEeeEEeccccceeeeeccCCeE
Q 000170 689 --E---GAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQML 763 (1950)
Q Consensus 689 --~---~slp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~~~~~~~~~~~~~~I~~l~WLs~~iL 763 (1950)
. -++.||.... +...+|.-+-+..|.++.. ++++....|..+.+|+++.=-.++--
T Consensus 233 ~~~~H~KtVTcL~l~s-----------------~~~rLlS~sLD~~VKVfd~--t~~Kvv~s~~~~~pvLsiavs~dd~t 293 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLAS-----------------DSTRLLSGSLDRHVKVFDT--TNYKVVHSWKYPGPVLSIAVSPDDQT 293 (487)
T ss_pred hhhcccceEEEEEeec-----------------CCceEeecccccceEEEEc--cceEEEEeeecccceeeEEecCCCce
Confidence 0 0122221111 1235788888999988874 67899999999999999987776555
Q ss_pred EEEeecCeEE
Q 000170 764 VVLTLLGQLY 773 (1950)
Q Consensus 764 ~vLt~s~~L~ 773 (1950)
+|+--++-+.
T Consensus 294 ~viGmsnGlv 303 (487)
T KOG0310|consen 294 VVIGMSNGLV 303 (487)
T ss_pred EEEeccccee
Confidence 5555444343
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.86 E-value=4e-09 Score=120.59 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=105.4
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|...-..+.||.++. ..+|+|+.||.|.||.+.++ . |+.--...|+..|||+.||.|+..+++|+-
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG---------~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sf 326 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG---------Q--CLRRFDRAHTKGVTCLSFSRDNSQILSASF 326 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc---------h--HHHHhhhhhccCeeEEEEccCcchhhcccc
Confidence 4556677789999986 68999999999999988543 2 332123468889999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC-c
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ-K 595 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~-~ 595 (1950)
|.+|++--+++|++++.+. ||++-|+++.|+.|+ + .++++.++| + +++|..-+.+|..+|.-- .
T Consensus 327 D~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~dG-----~-~iisaSsDg-------t-vkvW~~KtteC~~Tfk~~~~ 391 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDDG-----H-HIISASSDG-------T-VKVWHGKTTECLSTFKPLGT 391 (508)
T ss_pred cceEEEeccccchhHHHhc-CccccccceEEcCCC-----C-eEEEecCCc-------c-EEEecCcchhhhhhccCCCC
Confidence 9999999999999999997 999999999999873 3 344554554 2 566765555554444320 2
Q ss_pred cccEEEeeccc
Q 000170 596 TGIVLSASPLL 606 (1950)
Q Consensus 596 ~g~Vla~spLp 606 (1950)
.-.|.++-++|
T Consensus 392 d~~vnsv~~~P 402 (508)
T KOG0275|consen 392 DYPVNSVILLP 402 (508)
T ss_pred cccceeEEEcC
Confidence 22344455554
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.86 E-value=3.3e-07 Score=125.02 Aligned_cols=131 Identities=17% Similarity=0.211 Sum_probs=92.7
Q ss_pred CCcEEEEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcE
Q 000170 445 GSPQVLAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHV 520 (1950)
Q Consensus 445 G~pt~ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I 520 (1950)
+.+++++.+ +.+||+|+.+|+|++||...+ +.+. ...+|.++|++|+|+| ||.+|++|+.||+|
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---------~~~~---~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v 600 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---------QLVT---EMKEHEKRVWSIDYSSADPTLLASGSDDGSV 600 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCC---------eEEE---EecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence 445677765 378999999999999998431 1111 2356899999999996 89999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee-EEeecCCCccccE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK-TQCLLDGQKTGIV 599 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~-s~~ll~g~~~g~V 599 (1950)
++||+.++.++.++. .| ..|+++.|.+++ ++ .++++..+|.|..+.. ...+ ..+.+.| |.+.|
T Consensus 601 ~iWd~~~~~~~~~~~-~~-~~v~~v~~~~~~----g~-~latgs~dg~I~iwD~--------~~~~~~~~~~~~-h~~~V 664 (793)
T PLN00181 601 KLWSINQGVSIGTIK-TK-ANICCVQFPSES----GR-SLAFGSADHKVYYYDL--------RNPKLPLCTMIG-HSKTV 664 (793)
T ss_pred EEEECCCCcEEEEEe-cC-CCeEEEEEeCCC----CC-EEEEEeCCCeEEEEEC--------CCCCccceEecC-CCCCE
Confidence 999999999988885 44 689999997542 33 4455556665555543 2221 2344556 76666
Q ss_pred EEee
Q 000170 600 LSAS 603 (1950)
Q Consensus 600 la~s 603 (1950)
.++.
T Consensus 665 ~~v~ 668 (793)
T PLN00181 665 SYVR 668 (793)
T ss_pred EEEE
Confidence 4443
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.85 E-value=1.5e-08 Score=126.90 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=114.5
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec--ccCCCCCCCeEEEEEcCCCCEEEE
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG--LLGDRSPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~--~~~~~h~~~VtsLafS~DG~~Las 513 (1950)
......++++|++.+. .++|+|++|+++.+|++..+- +. ...+.+. .+...|...|.|++++|+.+.+|+
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~---~~--~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSK---ET--AFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcc---cc--cccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 3345677788888763 799999999999999985311 11 1112221 122348888999999999999999
Q ss_pred ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 514 GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
|+.|.+.+||++..+..+.+++ ||+-+|++|.|++. .|.++.++-+. | +|+|.--+..|.++|.|
T Consensus 481 ~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~-----dq~laT~SgD~--------T-vKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKN-----DQLLATCSGDK--------T-VKIWSISTFSCLKTFEG 545 (775)
T ss_pred cccccceeeecccCceEEEEee-CCccceEEEEeccc-----cceeEeccCCc--------e-EEEEEeccceeeeeecC
Confidence 9999999999999999999998 99999999999986 45565555443 3 78888777889999999
Q ss_pred CccccEEEeeccc
Q 000170 594 QKTGIVLSASPLL 606 (1950)
Q Consensus 594 ~~~g~Vla~spLp 606 (1950)
|+..|+.++-+.
T Consensus 546 -H~~aVlra~F~~ 557 (775)
T KOG0319|consen 546 -HTSAVLRASFIR 557 (775)
T ss_pred -ccceeEeeeeee
Confidence 999998766643
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.83 E-value=1.1e-08 Score=128.08 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=97.5
Q ss_pred CCcEEEEEcCC--EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVHPS--FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s~~--~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
..+||+.++++ +||||..||.|++|+... .+ ... +..+|..+||+|.|+.+|+.||+|+.||.|.+
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s-------~~---~~~--tfngHK~AVt~l~fd~~G~rlaSGskDt~IIv 133 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLES-------EE---ILI--TFNGHKAAVTTLKFDKIGTRLASGSKDTDIIV 133 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCC-------Cc---eee--eecccccceEEEEEcccCceEeecCCCccEEE
Confidence 46799999874 569999999999998732 11 111 45679999999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEe
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSA 602 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~ 602 (1950)
||+-.-.-+..+. ||+..|+...|..+ .. .+|+.-.++ .+|+|+--+-.|-.+-=+ |++.|-++
T Consensus 134 wDlV~E~Gl~rL~-GHkd~iT~~~F~~~-----~~-~lvS~sKDs--------~iK~WdL~tqhCf~Thvd-~r~Eiw~l 197 (888)
T KOG0306|consen 134 WDLVGEEGLFRLR-GHKDSITQALFLNG-----DS-FLVSVSKDS--------MIKFWDLETQHCFETHVD-HRGEIWAL 197 (888)
T ss_pred EEeccceeeEEee-cchHHHhHHhccCC-----Ce-EEEEeccCc--------eEEEEecccceeeeEEec-ccceEEEE
Confidence 9999777777776 99999999999974 22 344443332 367776544444444444 77777544
Q ss_pred ec
Q 000170 603 SP 604 (1950)
Q Consensus 603 sp 604 (1950)
+.
T Consensus 198 ~~ 199 (888)
T KOG0306|consen 198 VL 199 (888)
T ss_pred EE
Confidence 44
No 47
>PTZ00421 coronin; Provisional
Probab=98.83 E-value=1.8e-06 Score=111.04 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCCCc-------eeeeeccCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 493 DRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQRAS-------AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 493 ~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~g~-------~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
.+|.++|++++|+| |+.+||+|+.||+|++||+.++. .+.++. +|..+|.+|+|++++ .+.++.++
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~----~~iLaSgs- 145 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSA----MNVLASAG- 145 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCC----CCEEEEEe-
Confidence 46899999999999 89999999999999999998763 455665 899999999999862 23444444
Q ss_pred CCceEEEEcccccccccceeeeEEeecCCCccccEEEeec
Q 000170 565 TKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 565 ~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
.+|. +++|+..+.+....+.+ |.+.|.+++-
T Consensus 146 ~Dgt--------VrIWDl~tg~~~~~l~~-h~~~V~sla~ 176 (493)
T PTZ00421 146 ADMV--------VNVWDVERGKAVEVIKC-HSDQITSLEW 176 (493)
T ss_pred CCCE--------EEEEECCCCeEEEEEcC-CCCceEEEEE
Confidence 4443 45666555555666777 7777744443
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.82 E-value=5.1e-07 Score=110.03 Aligned_cols=141 Identities=18% Similarity=0.338 Sum_probs=104.8
Q ss_pred CCccccccCccccccccccCcceee-eEEecCChhH------HHHhhhccccccCCCcEEEEEcCCEEEEEeCCCcEEEE
Q 000170 397 LHWKEGAAAQPMRLEGVRRGSTTLG-YFDVDANNTI------TQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVV 469 (1950)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i------S~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~G~I~vf 469 (1950)
+-|-... +|+--++-|.-..| .|.||.-+.+ |+.|++-+||... |=.||+|+.|+.|-+|
T Consensus 109 i~Wd~ds----~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsR---------PfRi~T~sdDn~v~ff 175 (603)
T KOG0318|consen 109 ISWDFDS----KRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSR---------PFRIATGSDDNTVAFF 175 (603)
T ss_pred ceeCCCC----cEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCC---------ceEEEeccCCCeEEEe
Confidence 4455554 23322333333355 8999887766 4556665555422 2359999999999999
Q ss_pred eCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec--cCcCCCeEEEEE
Q 000170 470 PGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT--GEHTSPVVHTLF 547 (1950)
Q Consensus 470 d~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~--~~H~~~I~~v~F 547 (1950)
.- + .+.+......|..-|.|+.|||||+++|+.+.||.|.+||-.+|+.+..+. .+|.+.|..+.|
T Consensus 176 eG---P---------PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW 243 (603)
T KOG0318|consen 176 EG---P---------PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW 243 (603)
T ss_pred eC---C---------CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE
Confidence 63 1 112222445688899999999999999999999999999999999988885 389999999999
Q ss_pred ecCCCccCCceEEEEecCC
Q 000170 548 LGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 548 ~~d~~~~~~~~~~vssD~~ 566 (1950)
+|| +.+.+.+|+|..
T Consensus 244 sPD----s~~~~T~SaDkt 258 (603)
T KOG0318|consen 244 SPD----STQFLTVSADKT 258 (603)
T ss_pred CCC----CceEEEecCCce
Confidence 999 467888888886
No 49
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=98.81 E-value=2e-08 Score=103.00 Aligned_cols=104 Identities=21% Similarity=0.308 Sum_probs=91.2
Q ss_pred HHHhhccCCChHHHHHHHhcCCCCcchhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-CC
Q 000170 1678 IVEGMIGYVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYSFERRILDTAKSLIEDDTFYTMSVLKKEASHGYAPR-SL 1756 (1950)
Q Consensus 1678 lLe~m~~~V~lp~IL~kIls~~~s~~~~dfR~iL~~mL~sY~yE~~IL~~a~~Lle~Dl~~~l~~l~r~~~rG~~p~-s~ 1756 (1950)
+|+...+.|++..+|..| +.+.++.+|++.|...|..|..+....+....+...+....-.++.+.+++.+.+. ..
T Consensus 3 lL~~~~~~ld~~~vL~~L---P~~~~l~~l~~fl~~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~v~i~~~~ 79 (109)
T PF10367_consen 3 LLNEHGSRLDPIDVLKLL---PDDWPLSDLSDFLCKSLRKYSNRKRESQIEKNLLKSENLQLKYELVKLRSRSVVITEST 79 (109)
T ss_pred hHHhccccCCHHHHHHhC---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCceEEECCCC
Confidence 456677899999999998 55788999999999999999999999999999999888887788888777776654 78
Q ss_pred cccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
.|.+|+++|... .+++|+|||+||..|.
T Consensus 80 ~C~vC~k~l~~~----~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 80 KCSVCGKPLGNS----VFVVFPCGHVVHYSCI 107 (109)
T ss_pred CccCcCCcCCCc----eEEEeCCCeEEecccc
Confidence 999999999874 5999999999999997
No 50
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.80 E-value=5.1e-08 Score=111.65 Aligned_cols=139 Identities=14% Similarity=0.192 Sum_probs=111.7
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.|..+.|.+.++++.| +..++|..|+..++||++.+. .++ +..+|.+-|.+|+|-|+|.-+|+|+
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-------c~q-----tF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-------CVQ-----TFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-------eeE-----eecccccccceEEEccCCCeeeecC
Confidence 6778899999888876 789999999999999997531 111 3356999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 516 ADGHVTVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
.||+.++||+...+.+..+.. ....+|++|+|+.. +..+..+.++. + .-+|+...++...+|.|
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S-----GRlLfagy~d~--------~-c~vWDtlk~e~vg~L~G- 313 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS-----GRLLFAGYDDF--------T-CNVWDTLKGERVGVLAG- 313 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----ccEEEeeecCC--------c-eeEeeccccceEEEeec-
Confidence 999999999999888877752 22589999999974 56666666665 2 45788777777888999
Q ss_pred ccccE--EEeec
Q 000170 595 KTGIV--LSASP 604 (1950)
Q Consensus 595 ~~g~V--la~sp 604 (1950)
|.+.| |..+|
T Consensus 314 HeNRvScl~~s~ 325 (343)
T KOG0286|consen 314 HENRVSCLGVSP 325 (343)
T ss_pred cCCeeEEEEECC
Confidence 99998 44444
No 51
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=98.79 E-value=5.9e-10 Score=119.78 Aligned_cols=96 Identities=30% Similarity=0.604 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHhhcCc-hHHHHHHhhCCCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhhHHHHHHHh
Q 000170 1473 TDDMIELYLELLCRYER-DSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELNDKFAALETA 1551 (1950)
Q Consensus 1473 ~~~l~elYIeLLCqydP-~~Vl~fLqt~~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~~L~~~ 1551 (1950)
++.++++++.|+|+++| +++.+||++.+.|+++.++++|++++.+++++|||+|.|++.+|+++ +..+++
T Consensus 41 ~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i-~~~~~~-------- 111 (143)
T PF00637_consen 41 NPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEI-LHKLKD-------- 111 (143)
T ss_dssp SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSST-SSSTHC--------
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHH-HHHHcc--------
Confidence 46788999999999998 99999999998999999999999999999999999999999999975 322111
Q ss_pred hhccccccccCCCcccccccccchhhhhhhHHHHHHHHHHHhhhcCCCCCccchhHhHHHHHHHhcc
Q 000170 1552 VGSALPIAVSNGSVSVEHFSTVLNMEEVNDVNNILRACIGLCQRNTPRLNPEESEVLWFKLLDSFCE 1618 (1950)
Q Consensus 1552 v~~~ls~~~s~~~~~~e~~~~~~~~~e~~~l~~~l~~AI~lCqr~s~~L~~ee~e~LWf~LLd~~i~ 1618 (1950)
...|+++|.+.. ++++|..|++.++.
T Consensus 112 ----------------------------------~~~a~e~~~~~~-------~~~l~~~l~~~~l~ 137 (143)
T PF00637_consen 112 ----------------------------------YEEAIEYAKKVD-------DPELWEQLLKYCLD 137 (143)
T ss_dssp ----------------------------------SCCCTTTGGGCS-------SSHHHHHHHHHHCT
T ss_pred ----------------------------------HHHHHHHHHhcC-------cHHHHHHHHHHHHh
Confidence 123457887764 47999999999765
No 52
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.79 E-value=1.1e-08 Score=121.04 Aligned_cols=152 Identities=16% Similarity=0.212 Sum_probs=115.8
Q ss_pred eEEecCChhHHHHhhhccccccCC-CcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCC
Q 000170 422 YFDVDANNTITQTIASQAFRRDHG-SPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAP 498 (1950)
Q Consensus 422 ~~~~~~~~~iS~~i~s~~f~~~~G-~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~ 498 (1950)
+..|+-..=..+.|. +.+- .++++..+ +.++++|..+|.|++|+... +..+ +. + ..|..+
T Consensus 120 FtLWNg~~fnFEtil-----QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-------nnVk-~~---~-ahh~ea 182 (464)
T KOG0284|consen 120 FTLWNGTSFNFETIL-----QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-------NNVK-II---Q-AHHAEA 182 (464)
T ss_pred EEEecCceeeHHHHh-----hhhcccceeEEEccCCCEEEEcCCCceEEecccch-------hhhH-Hh---h-Hhhhhh
Confidence 556644333334443 3233 35666665 58999999999999998632 1222 11 1 235589
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccc
Q 000170 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVP 578 (1950)
Q Consensus 499 VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~r 578 (1950)
|++++|||.-...++++.||+|+|||...++..+.+. ||..-|.+|.|.|. ...+++++++. .++
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~-----kgLiasgskDn---------lVK 247 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPT-----KGLIASGSKDN---------LVK 247 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCc-----cceeEEccCCc---------eeE
Confidence 9999999999999999999999999999999888886 99999999999984 55667777775 478
Q ss_pred cccceeeeEEeecCCCccccEEEeeccc
Q 000170 579 LLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 579 l~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
+|+-.++.|.+.|.+ |.+.|++..--|
T Consensus 248 lWDprSg~cl~tlh~-HKntVl~~~f~~ 274 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHG-HKNTVLAVKFNP 274 (464)
T ss_pred eecCCCcchhhhhhh-ccceEEEEEEcC
Confidence 999999999999999 999997765533
No 53
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.78 E-value=7.3e-08 Score=115.98 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=118.4
Q ss_pred EecCChhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCC-cc-----Cc-ccc-------e---
Q 000170 424 DVDANNTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAH-HR-----DS-MDS-------K--- 484 (1950)
Q Consensus 424 ~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~-~~-----d~-~~~-------k--- 484 (1950)
.|+........+. .+-|.+.++.=++ +||++|+.||++.+||...+.- +. .. -+. .
T Consensus 261 iw~~~G~l~~tl~-----~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts 335 (524)
T KOG0273|consen 261 IWNKDGNLISTLG-----QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATS 335 (524)
T ss_pred EEecCchhhhhhh-----ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeec
Confidence 4555555544443 5678889999985 8999999999999999743210 00 00 000 0
Q ss_pred ----ee--e-ecc-----cCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCC
Q 000170 485 ----MM--M-LGL-----LGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDS 552 (1950)
Q Consensus 485 ----~~--~-l~~-----~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~ 552 (1950)
++ | ++. +..+|+++|.+|.|+|-|..||+++.||+++||.+..+.+.+.+. +|+..|..+.|+|.++
T Consensus 336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGP 414 (524)
T ss_pred CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCC
Confidence 11 0 000 113599999999999999999999999999999999999988886 9999999999999765
Q ss_pred ccCC---ceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 553 QVTR---QFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 553 ~~~~---~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
-... +..++++-.++ .+++|++..+.+.+.|-+ |+-+|.+++-.|
T Consensus 415 v~~n~~~~~~l~sas~ds--------tV~lwdv~~gv~i~~f~k-H~~pVysvafS~ 462 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDS--------TVKLWDVESGVPIHTLMK-HQEPVYSVAFSP 462 (524)
T ss_pred ccCCCcCCceEEEeecCC--------eEEEEEccCCceeEeecc-CCCceEEEEecC
Confidence 3211 12344443332 478898877888888877 888896555544
No 54
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.74 E-value=6.6e-08 Score=113.45 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=101.5
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC---------------C
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP---------------G 508 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D---------------G 508 (1950)
=+..+++++ ..+|+|+.+.+|++|-+.. .+ |.. .+..|..+|-|++|-|. |
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t-------~~----~k~-~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVAT-------KQ----CKA-ELREHEHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEecc-------ch----hhh-hhhccccceEEEEecccccCcchhhccCCCCCc
Confidence 357788875 6799999999999998732 11 211 34568899999999654 4
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEE
Q 000170 509 DLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQ 588 (1950)
Q Consensus 509 ~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~ 588 (1950)
.+|++|+.|++|++||+.+|.|+.++. ||...|..++|+|. +..++.++|++ + +|+|+....+|-
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~-----Gkyi~ScaDDk--------t-lrvwdl~~~~cm 369 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPG-----GKYILSCADDK--------T-LRVWDLKNLQCM 369 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcCC-----CeEEEEEecCC--------c-EEEEEeccceee
Confidence 699999999999999999999999996 99999999999986 67888888987 4 788887666777
Q ss_pred eecCCCccccE
Q 000170 589 CLLDGQKTGIV 599 (1950)
Q Consensus 589 ~ll~g~~~g~V 599 (1950)
+.+.- |.+.|
T Consensus 370 k~~~a-h~hfv 379 (406)
T KOG0295|consen 370 KTLEA-HEHFV 379 (406)
T ss_pred eccCC-Cccee
Confidence 77765 66655
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.71 E-value=1.1e-07 Score=122.67 Aligned_cols=142 Identities=21% Similarity=0.203 Sum_probs=114.9
Q ss_pred hhHHHHhhhccccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC
Q 000170 429 NTITQTIASQAFRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ 506 (1950)
Q Consensus 429 ~~iS~~i~s~~f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~ 506 (1950)
+.+........+..++|.+.+++.. +.++++|+.|.+++|||.+.+ .|+. ...+|++.|.+|..
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---------~C~~---~l~gh~stv~~~~~-- 299 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---------ECTH---SLQGHTSSVRCLTI-- 299 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---------cEEE---EecCCCceEEEEEc--
Confidence 3344444555678899999999998 799999999999999998542 3443 34569999999976
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee
Q 000170 507 PGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK 586 (1950)
Q Consensus 507 DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~ 586 (1950)
++.++++|+.|.+|++||+.+|++++++. ||+.+|.+|....+ .++++-.+|. +++|+..+++
T Consensus 300 ~~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~~~--------~lvsgs~d~~--------v~VW~~~~~~ 362 (537)
T KOG0274|consen 300 DPFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLDEP--------LLVSGSYDGT--------VKVWDPRTGK 362 (537)
T ss_pred cCceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEecCC--------EEEEEecCce--------EEEEEhhhce
Confidence 78889999999999999999999999997 69999999999953 4555544442 5667777888
Q ss_pred EEeecCCCccccEEEe
Q 000170 587 TQCLLDGQKTGIVLSA 602 (1950)
Q Consensus 587 s~~ll~g~~~g~Vla~ 602 (1950)
+.+.|.| |.+.|.++
T Consensus 363 cl~sl~g-H~~~V~sl 377 (537)
T KOG0274|consen 363 CLKSLSG-HTGRVYSL 377 (537)
T ss_pred eeeeecC-CcceEEEE
Confidence 9999999 99999776
No 56
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.70 E-value=1.1e-08 Score=118.38 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=104.3
Q ss_pred cccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCC------CccCcc------cceee---------eec--c-------
Q 000170 441 RRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSA------HHRDSM------DSKMM---------MLG--L------- 490 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~------~~~d~~------~~k~~---------~l~--~------- 490 (1950)
....|++.|+......|++|++|.+|+|||+..+- ||.+.- ++-++ +|. .
T Consensus 234 ~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~r 313 (499)
T KOG0281|consen 234 TGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLR 313 (499)
T ss_pred hcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHH
Confidence 46789999999999999999999999999986432 121110 00000 010 0
Q ss_pred -cCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 491 -LGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 491 -~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
..-+|.++|..+.| |.+|+++++.|.+|++|++.++.+++++. ||.-.|-++.+.+. ++|||.++
T Consensus 314 rVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr~r--------lvVSGSSD--- 379 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYRDR--------LVVSGSSD--- 379 (499)
T ss_pred HHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhh-cccccceehhccCe--------EEEecCCC---
Confidence 01258899999999 66799999999999999999999999997 99999999999852 55555444
Q ss_pred EEEcccccccccceeeeEEeecCCCccccE
Q 000170 570 QLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 570 ~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
..+|+|+.-.+.|.++|.| |---|
T Consensus 380 -----ntIRlwdi~~G~cLRvLeG-HEeLv 403 (499)
T KOG0281|consen 380 -----NTIRLWDIECGACLRVLEG-HEELV 403 (499)
T ss_pred -----ceEEEEeccccHHHHHHhc-hHHhh
Confidence 2378998877778888988 65433
No 57
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=1.4e-08 Score=126.61 Aligned_cols=150 Identities=17% Similarity=0.233 Sum_probs=119.8
Q ss_pred CChhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEE
Q 000170 427 ANNTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCF 504 (1950)
Q Consensus 427 ~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLaf 504 (1950)
++.+|++-...-.|+.+-+.+.|+..+. .+||.|+.+|+|++||+. +++.+. ++.+|...+++|+|
T Consensus 53 ~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle---------eAk~vr---tLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 53 NLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE---------EAKIVR---TLTGHLLNITSVDF 120 (825)
T ss_pred ccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh---------hhhhhh---hhhccccCcceeee
Confidence 4555554444445888888899999986 579999999999999983 233222 56679999999999
Q ss_pred cCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccccee
Q 000170 505 NQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFS 584 (1950)
Q Consensus 505 S~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t 584 (1950)
+|-|.|.|+|+.|+++++||+.+..|.+++. +|...|..+.|+|+ +...+.++|+. + +++|+.-.
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~-----Gr~v~~g~ed~--------t-vki~d~~a 185 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPD-----GRWVASGGEDN--------T-VKIWDLTA 185 (825)
T ss_pred ccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecCC-----CceeeccCCcc--------e-eeeecccc
Confidence 9999999999999999999999999999986 69999999999998 56888888865 3 77888655
Q ss_pred eeEEeecCCCccccEEEeec
Q 000170 585 IKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 585 ~~s~~ll~g~~~g~Vla~sp 604 (1950)
++-.+-|.+ |.+.|.+..-
T Consensus 186 gk~~~ef~~-~e~~v~sle~ 204 (825)
T KOG0267|consen 186 GKLSKEFKS-HEGKVQSLEF 204 (825)
T ss_pred ccccccccc-cccccccccc
Confidence 555566777 7788755443
No 58
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.69 E-value=1.2e-07 Score=114.34 Aligned_cols=245 Identities=20% Similarity=0.217 Sum_probs=153.8
Q ss_pred CCccccccccccccccccccccccccCCCCCCCCCccccCCCCCCChhhhHHHHHHHHhhhhhhhhhHhhhhccCCCCCh
Q 000170 302 LNESDRTGLMEENLEIPTLEMESSDKSMSTSQDDEVGVDGSNDASSIDDISELVEERIGQLESEITSRRAEKKVQPSLKP 381 (1950)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1950)
+.+-.|.-.|.+|-.++. ....++++.||+----.++...+. |-+|.-.++=
T Consensus 124 ~gEVnRaRymPQnp~iVA----------t~t~~~dv~Vfd~tk~~s~~~~~~------------------~~~Pdl~L~g 175 (422)
T KOG0264|consen 124 DGEVNRARYMPQNPNIVA----------TKTSSGDVYVFDYTKHPSKPKASG------------------ECRPDLRLKG 175 (422)
T ss_pred CccchhhhhCCCCCcEEE----------ecCCCCCEEEEEeccCCCcccccc------------------cCCCceEEEe
Confidence 344567777888777776 667778888876544444411110 1122221111
Q ss_pred hhHHHHHHHhhhccCCCccccccCccccccccccCcceeeeEEecCChhHHHHhhhc-cccccCCCcEEEEEcC---CEE
Q 000170 382 LELAEELEKKQASTGLHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQ-AFRRDHGSPQVLAVHP---SFI 457 (1950)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~-~f~~~~G~pt~ia~s~---~~I 457 (1950)
=+ .| -+|+.|..-. +.+|-+=+ -...+++..++.....+..+.-. .|...-..+.-++.+. +.+
T Consensus 176 H~-~e-------g~glsWn~~~---~g~Lls~~-~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 176 HE-KE-------GYGLSWNRQQ---EGTLLSGS-DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred ec-cc-------cccccccccc---ceeEeecc-CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhh
Confidence 11 01 4567776554 44443322 44567788886666654444432 3344444455566654 668
Q ss_pred EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEEEECCCC-ceeeeec
Q 000170 458 AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDVQRA-SAAKVIT 535 (1950)
Q Consensus 458 AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g-~~l~tl~ 535 (1950)
++.+.+|.+.|||.|.+ .+ +. .....+|.++|.|++|||- +..||+|++||+|.|||+.+- ++++++.
T Consensus 244 ~sv~dd~~L~iwD~R~~-~~------~~---~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e 313 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSN-TS------KP---SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE 313 (422)
T ss_pred eeecCCCeEEEEEcCCC-CC------CC---cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc
Confidence 88889999999999852 11 11 1134679999999999985 668999999999999999985 5778886
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccce-e--------eeEEeecCCCccccEEEeeccc
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRF-S--------IKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~-t--------~~s~~ll~g~~~g~Vla~spLp 606 (1950)
+|...|..|.|+|. ..+++.|+-.+|++..+..++ |+.- + .+-..+=+| |++.|..|+--|
T Consensus 314 -~H~dev~~V~WSPh-----~etvLASSg~D~rl~vWDls~---ig~eq~~eda~dgppEllF~HgG-H~~kV~DfsWnp 383 (422)
T KOG0264|consen 314 -GHEDEVFQVEWSPH-----NETVLASSGTDRRLNVWDLSR---IGEEQSPEDAEDGPPELLFIHGG-HTAKVSDFSWNP 383 (422)
T ss_pred -CCCcceEEEEeCCC-----CCceeEecccCCcEEEEeccc---cccccChhhhccCCcceeEEecC-cccccccccCCC
Confidence 99999999999996 445666665777777777652 2211 0 001134566 888886666654
No 59
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=108.71 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=90.9
Q ss_pred cccccCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~ 516 (1950)
.+..+.|...|+.+-. ..|..|+-|.+.-+||+.++ +.+. ...+|.|-|-+|+++| ++.+.++|+.
T Consensus 140 ~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g---------~~~~---~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG---------QQTQ---VFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred eecCccceeEEEEEcCCCceEecCCCceEEEEEcccc---------eEEE---EecCCcccEEEEecCCCCCCeEEeccc
Confidence 3455677788887765 78999999999999999542 2221 2356999999999999 9999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
|++.+|||+..|.|.+++. ||.+-|..|+|.|+ +...+.++|+.
T Consensus 208 D~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~-----G~afatGSDD~ 251 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPS-----GDAFATGSDDA 251 (343)
T ss_pred ccceeeeeccCcceeEeec-ccccccceEEEccC-----CCeeeecCCCc
Confidence 9999999999999999997 99999999999997 44455555664
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.67 E-value=3.5e-07 Score=105.47 Aligned_cols=115 Identities=18% Similarity=0.339 Sum_probs=86.1
Q ss_pred CCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 445 GSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 445 G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
-++.+|++++ .++|.|+-||+|++|++.. .+. .. ......|.+||-+++||.||+.+++|+.||.++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~--------~g~-~~-~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQN--------SGQ-LV-PKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEec--------CCc-cc-chhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 3467888887 5788999999999999832 011 11 111235899999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccce
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRF 583 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~ 583 (1950)
+||+.+++..+.- .|..+|..+.|.+.. .-+.++-++-++ | +|+|+.+
T Consensus 98 ~wDL~S~Q~~~v~--~Hd~pvkt~~wv~~~---~~~cl~TGSWDK--------T-lKfWD~R 145 (347)
T KOG0647|consen 98 LWDLASGQVSQVA--AHDAPVKTCHWVPGM---NYQCLVTGSWDK--------T-LKFWDTR 145 (347)
T ss_pred EEEccCCCeeeee--ecccceeEEEEecCC---CcceeEeccccc--------c-eeecccC
Confidence 9999999775443 899999999999752 112334444554 3 7888753
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.67 E-value=4.7e-08 Score=113.23 Aligned_cols=92 Identities=18% Similarity=0.313 Sum_probs=79.1
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
+...+-|+......|++|.-|.+|.|||... .. |+. ...+|+|+|-|+.| |...+++|+.|.+|++
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~---------~~--c~~-~L~GHtGSVLCLqy--d~rviisGSSDsTvrv 261 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS---------LE--CLK-ILTGHTGSVLCLQY--DERVIVSGSSDSTVRV 261 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEecccc---------HH--HHH-hhhcCCCcEEeeec--cceEEEecCCCceEEE
Confidence 4556789999888899999999999999732 11 222 45679999999998 7779999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEec
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
||+++|++++++- +|..+|.++.|+.
T Consensus 262 WDv~tge~l~tli-hHceaVLhlrf~n 287 (499)
T KOG0281|consen 262 WDVNTGEPLNTLI-HHCEAVLHLRFSN 287 (499)
T ss_pred EeccCCchhhHHh-hhcceeEEEEEeC
Confidence 9999999999996 8999999999995
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=3.8e-07 Score=103.90 Aligned_cols=133 Identities=17% Similarity=0.262 Sum_probs=101.3
Q ss_pred CcEEEEE--cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAV--HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~--s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
+++.+|- +++|||+|+-|+++.||.-. + .+-++ . .+.++|-..|.|++||++|.+||+++.|..|=||
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~------~-~efec--v-~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKE------D-GEFEC--V-ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecC------C-CceeE--E-eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 4566666 56999999999999999531 1 12222 2 2567899999999999999999999999999999
Q ss_pred ECCCC---ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccccee---eeEEeecCCCccc
Q 000170 524 DVQRA---SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFS---IKTQCLLDGQKTG 597 (1950)
Q Consensus 524 Dl~~g---~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t---~~s~~ll~g~~~g 597 (1950)
.+..+ .|..++. +|+.-|-+|.|.|- ...++.++-++ | +|+|+.+. -.|.+.|+| |.+
T Consensus 133 e~deddEfec~aVL~-~HtqDVK~V~WHPt-----~dlL~S~SYDn--------T-Ik~~~~~~dddW~c~~tl~g-~~~ 196 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQ-EHTQDVKHVIWHPT-----EDLLFSCSYDN--------T-IKVYRDEDDDDWECVQTLDG-HEN 196 (312)
T ss_pred EecCCCcEEEEeeec-cccccccEEEEcCC-----cceeEEeccCC--------e-EEEEeecCCCCeeEEEEecC-ccc
Confidence 99855 4777776 99999999999983 34555555554 3 67777652 247889999 888
Q ss_pred cE--EEeec
Q 000170 598 IV--LSASP 604 (1950)
Q Consensus 598 ~V--la~sp 604 (1950)
+| ++|.+
T Consensus 197 TVW~~~F~~ 205 (312)
T KOG0645|consen 197 TVWSLAFDN 205 (312)
T ss_pred eEEEEEecC
Confidence 88 55555
No 63
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.64 E-value=1.7e-07 Score=111.89 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=81.3
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.||.++|+ ..++.|+.||.|+|||++.. +. .- ..++|.++|++|+||.+|-|||++..||.|++||
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~-------~~---~a--~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-------TN---VA--KFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCc-------cc---cc--cCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 68888886 57889999999999999752 11 11 2345999999999999999999999999999999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEE
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVT 562 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vs 562 (1950)
+.+-+..+++...-...|.++.|... +..++++
T Consensus 418 LRKl~n~kt~~l~~~~~v~s~~fD~S-----Gt~L~~~ 450 (506)
T KOG0289|consen 418 LRKLKNFKTIQLDEKKEVNSLSFDQS-----GTYLGIA 450 (506)
T ss_pred ehhhcccceeeccccccceeEEEcCC-----CCeEEee
Confidence 99999888887555668999999864 4555555
No 64
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.61 E-value=5e-07 Score=104.20 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=88.7
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
.-|.+.++.++| .++|+|++|..|++|+.-. |..+ .+ ...+|.|+|.-+.|++||..|++++.|.+|
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-----dceN----~~--~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-----DCEN----FW--VLKGHSGAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEeccc-----cccc----ee--eeccccceeEeeeeccCCCEEEEecCCceE
Confidence 456678888876 7999999999999999732 2111 11 235699999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+.||+++|++.+... +|+.-|..+.=+.- +..++.|+.++|.+-+|.
T Consensus 115 ~~wD~~tG~~~rk~k-~h~~~vNs~~p~rr-----g~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 115 RGWDAETGKRIRKHK-GHTSFVNSLDPSRR-----GPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred EEEecccceeeehhc-cccceeeecCcccc-----CCeEEEecCCCceEEEEe
Confidence 999999999999987 99988888872221 335666666666555554
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=121.60 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=105.4
Q ss_pred cccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 441 RRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+..-+.|.|+..++.++++|+.||+|.|||... .+ |+. ...+|.++|+++.|.+. .++.+|+.|++|
T Consensus 328 ~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~---------~~--cl~-sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 328 RGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRT---------GK--CLK-SLSGHTGRVYSLIVDSE-NRLLSGSLDTTI 394 (537)
T ss_pred ccccccEEEEEecCCEEEEEecCceEEEEEhhh---------ce--eee-eecCCcceEEEEEecCc-ceEEeeeeccce
Confidence 346777899999999999999999999999843 23 332 55679999999988554 999999999999
Q ss_pred EEEECCCC-ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE
Q 000170 521 TVWDVQRA-SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 521 ~lWDl~~g-~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
++||+.++ +|++++. +|..-|..+.+.+. .++++-.+| .+++|+.-.+++.+.+.|++.+.|
T Consensus 395 kvWdl~~~~~c~~tl~-~h~~~v~~l~~~~~--------~Lvs~~aD~--------~Ik~WD~~~~~~~~~~~~~~~~~v 457 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQ-GHTSLVSSLLLRDN--------FLVSSSADG--------TIKLWDAEEGECLRTLEGRHVGGV 457 (537)
T ss_pred EeecCCchhhhhhhhc-CCcccccccccccc--------eeEeccccc--------cEEEeecccCceeeeeccCCcccE
Confidence 99999999 9999997 99999988887742 566665554 367888778888898888444555
Q ss_pred EEe
Q 000170 600 LSA 602 (1950)
Q Consensus 600 la~ 602 (1950)
-++
T Consensus 458 ~~l 460 (537)
T KOG0274|consen 458 SAL 460 (537)
T ss_pred EEe
Confidence 333
No 66
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.60 E-value=5.5e-08 Score=115.28 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=99.8
Q ss_pred CCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
-+++|+|+++ +..++.+.||+|+|||..-. .++ . ...+|.--|+|++|.|.-..+|+|+.|..|++
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-----kee-~------vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-----KEE-R------VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCC-----chh-h------eeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 5678999887 67999999999999998421 011 1 22458888999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEe
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSA 602 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~ 602 (1950)
||.++|.|+.++. +|...|+.+.|.++ ++.++..+-++ . .++++-.+-+....+.| |.-.|.++
T Consensus 249 WDprSg~cl~tlh-~HKntVl~~~f~~n-----~N~Llt~skD~-~--------~kv~DiR~mkEl~~~r~-Hkkdv~~~ 312 (464)
T KOG0284|consen 249 WDPRSGSCLATLH-GHKNTVLAVKFNPN-----GNWLLTGSKDQ-S--------CKVFDIRTMKELFTYRG-HKKDVTSL 312 (464)
T ss_pred ecCCCcchhhhhh-hccceEEEEEEcCC-----CCeeEEccCCc-e--------EEEEehhHhHHHHHhhc-chhhheee
Confidence 9999999999997 99999999999987 45665555443 1 22232222222344566 77778655
Q ss_pred ecccc
Q 000170 603 SPLLF 607 (1950)
Q Consensus 603 spLp~ 607 (1950)
.-.|+
T Consensus 313 ~WhP~ 317 (464)
T KOG0284|consen 313 TWHPL 317 (464)
T ss_pred ccccc
Confidence 44444
No 67
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.59 E-value=2e-07 Score=109.60 Aligned_cols=140 Identities=18% Similarity=0.124 Sum_probs=106.0
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
++-+.+++|++.+-|.+|..|++..+ -++ . +..+|..+|..++.+.||+.+|+|+.|.++++|=+.++
T Consensus 200 ~f~P~gd~ilS~srD~tik~We~~tg---------~cv--~-t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 200 FFLPLGDHILSCSRDNTIKAWECDTG---------YCV--K-TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred EEEecCCeeeecccccceeEEecccc---------eeE--E-eccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 34455699999999999999998432 222 2 55678889999999999999999999999999999999
Q ss_pred ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc---ccccccceeeeEEeecCCCccccE--EEee
Q 000170 529 SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS---VVPLLNRFSIKTQCLLDGQKTGIV--LSAS 603 (1950)
Q Consensus 529 ~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft---~~rl~~~~t~~s~~ll~g~~~g~V--la~s 603 (1950)
+|...+. +|..+|-+++|.+..+.++- .-+-+++++| -+.-..+ .+|+|++-++.|.-+|.| |.++| ++|+
T Consensus 268 ~~k~~lR-~hEh~vEci~wap~~~~~~i-~~at~~~~~~-~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~ 343 (406)
T KOG0295|consen 268 QCKAELR-EHEHPVECIAWAPESSYPSI-SEATGSTNGG-QVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFS 343 (406)
T ss_pred hhhhhhh-ccccceEEEEecccccCcch-hhccCCCCCc-cEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEc
Confidence 9988886 99999999999876432111 1122222222 2222222 388999999999999999 99999 5555
Q ss_pred c
Q 000170 604 P 604 (1950)
Q Consensus 604 p 604 (1950)
|
T Consensus 344 p 344 (406)
T KOG0295|consen 344 P 344 (406)
T ss_pred C
Confidence 5
No 68
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.59 E-value=1.4e-07 Score=113.48 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=107.9
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCc--c-Cccc-ce--eeeecccC-CCCCCCeEEEEEcCCCCEE
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHH--R-DSMD-SK--MMMLGLLG-DRSPAPVTAMCFNQPGDLL 511 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~--~-d~~~-~k--~~~l~~~~-~~h~~~VtsLafS~DG~~L 511 (1950)
+.+.-+++|++.++ .++..++.+|+|.=|+..++..- . .... .+ -.-+. .. ..|...|.++|.|+||+||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k-~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLK-ESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCC-cccccccceeEEEEEcCCCcEE
Confidence 44677889999987 59999999999999998544210 0 0000 00 00000 11 2688999999999999999
Q ss_pred EEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec
Q 000170 512 LAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL 591 (1950)
Q Consensus 512 asG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll 591 (1950)
|+|..|.+|.|||..+++.++++. +|..+|.+++|-.+ +.+....|.|-+ +++|+.-...-..+|
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~g----t~~lys~s~Drs----------vkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKG----TSELYSASADRS----------VKVWSIDQLSYVETL 282 (479)
T ss_pred EecCCCceEEEecCcccchhhccc-ccccceeeeeeecC----ccceeeeecCCc----------eEEEehhHhHHHHHH
Confidence 999999999999999999999987 99999999999965 445555565665 455543222223456
Q ss_pred CCCccccEEEeecccc
Q 000170 592 DGQKTGIVLSASPLLF 607 (1950)
Q Consensus 592 ~g~~~g~Vla~spLp~ 607 (1950)
-| |.+.|+++..|-.
T Consensus 283 yG-Hqd~v~~IdaL~r 297 (479)
T KOG0299|consen 283 YG-HQDGVLGIDALSR 297 (479)
T ss_pred hC-Cccceeeechhcc
Confidence 67 8888888877764
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.58 E-value=2.2e-07 Score=116.62 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=103.6
Q ss_pred CcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.+.|++++ +.|+|||-=|.+|.||-+ | +.+ +.+ ..=+|.-||.||.+|||++.+++|++|.+|++|
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyfl-------D--tlK-Ffl--sLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFL-------D--TLK-FFL--SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEe-------c--cee-eee--eecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 46788888 589999999999999976 2 222 333 344699999999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEee
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSAS 603 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~s 603 (1950)
-+.=|.|.+.+- +|...|.+|.|.|+ .|.-..+| .+|. +|-|+.-..+.-..|.| |.+.|-+.+
T Consensus 578 GLdFGDCHKS~f-AHdDSvm~V~F~P~-----~~~FFt~g-KD~k--------vKqWDg~kFe~iq~L~~-H~~ev~cLa 641 (888)
T KOG0306|consen 578 GLDFGDCHKSFF-AHDDSVMSVQFLPK-----THLFFTCG-KDGK--------VKQWDGEKFEEIQKLDG-HHSEVWCLA 641 (888)
T ss_pred ccccchhhhhhh-cccCceeEEEEccc-----ceeEEEec-Ccce--------EEeechhhhhhheeecc-chheeeeeE
Confidence 999999999997 99999999999996 34444444 4443 45564434455567888 999996665
Q ss_pred ccc
Q 000170 604 PLL 606 (1950)
Q Consensus 604 pLp 606 (1950)
.-|
T Consensus 642 v~~ 644 (888)
T KOG0306|consen 642 VSP 644 (888)
T ss_pred EcC
Confidence 544
No 70
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.58 E-value=2.2e-07 Score=109.46 Aligned_cols=135 Identities=16% Similarity=0.290 Sum_probs=92.9
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
|.-.-++..|++-. =+=+....-|..+--++.-|.-++ ..+|+++-||.|+|||+|.++ .+ .+++ .
T Consensus 230 GDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~-----~~-~~~~----~ 298 (440)
T KOG0302|consen 230 GDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP-----KK-AAVS----T 298 (440)
T ss_pred CccccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC-----cc-ceeE----e
Confidence 33334445554333 122223334444445555555544 689999999999999998643 11 1232 1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC---CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR---ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~---g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
..|.+-|..|+||.+-.+||+|+.||+++|||+.. ++.+.++. .|..+|++|.|.|.+ ....++++++.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e----~s~iaasg~D~ 370 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHE----DSVIAASGEDN 370 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEecccc----CceEEeccCCC
Confidence 56899999999999999999999999999999985 45566675 899999999999863 33455555443
No 71
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.58 E-value=7.1e-07 Score=102.95 Aligned_cols=126 Identities=13% Similarity=0.244 Sum_probs=94.3
Q ss_pred ccccCCCcEEEEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 440 FRRDHGSPQVLAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 440 f~~~~G~pt~ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
||.+.+-+.++.|. +..|++|+.||++++||++.- . ++. .-...-++|+++|+.+++-+.+|.-
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-------~--~~~----t~~~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-------E--AIK----TFENKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeeccc-------c--hhh----ccccceeEEEEEecccccceeeccc
Confidence 44556666777665 378999999999999999741 1 111 1113567999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccccee----eeEEeecC
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFS----IKTQCLLD 592 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t----~~s~~ll~ 592 (1950)
|+.|++||+.++.++++++ ||..+|+++.-++++ ...+--+-|.. +|+|++.. .+|-+++.
T Consensus 195 dn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~g----s~llsnsMd~t----------vrvwd~rp~~p~~R~v~if~ 259 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYG----SFLLSNSMDNT----------VRVWDVRPFAPSQRCVKIFQ 259 (338)
T ss_pred cCceeeeccccCcceEEee-cccCceeeEEeccCC----Cccccccccce----------EEEEEecccCCCCceEEEee
Confidence 9999999999999999997 999999999999874 23344444554 45565432 23566777
Q ss_pred C
Q 000170 593 G 593 (1950)
Q Consensus 593 g 593 (1950)
|
T Consensus 260 g 260 (338)
T KOG0265|consen 260 G 260 (338)
T ss_pred c
Confidence 7
No 72
>PTZ00420 coronin; Provisional
Probab=98.56 E-value=7.3e-07 Score=115.47 Aligned_cols=91 Identities=11% Similarity=0.163 Sum_probs=71.2
Q ss_pred ccCCCcEEEEEcC--C-EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 442 RDHGSPQVLAVHP--S-FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~-~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
.+.+.+++++.++ . ++|+|+.||+|++||++.+ + ....+ . +.+.|++++|++||++||+|+.||
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg------~--~~~~i----~-~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENE------K--RAFQI----N-MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCC------c--EEEEE----e-cCCcEEEEEECCCCCEEEEEecCC
Confidence 3456788999986 3 4688999999999998542 1 11111 1 457899999999999999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEE
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTL 546 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~ 546 (1950)
.|+|||+.+++++.++. +|.+.+....
T Consensus 190 ~IrIwD~Rsg~~i~tl~-gH~g~~~s~~ 216 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFH-IHDGGKNTKN 216 (568)
T ss_pred EEEEEECCCCcEEEEEe-cccCCceeEE
Confidence 99999999999998886 8877654433
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.55 E-value=1.4e-07 Score=111.77 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=92.4
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS 529 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~ 529 (1950)
...+|+|+|+|++|.+..+|++-+ |. + +.+..+..+|..+|..|.||||.++|++++.+..+.+||+.+|.
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~-----d~---~-~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd 302 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVY-----DV---H-FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD 302 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEec-----Cc---c-eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch
Confidence 334469999999999999998743 11 1 22334667799999999999999999999999999999999999
Q ss_pred eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccc
Q 000170 530 AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 530 ~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~ 581 (1950)
+.+.+..+|...+.+++|.||+ .+.++-+.|..-..|-|.+....-|.
T Consensus 303 ~~~~y~~~~~~S~~sc~W~pDg----~~~V~Gs~dr~i~~wdlDgn~~~~W~ 350 (519)
T KOG0293|consen 303 LRHLYPSGLGFSVSSCAWCPDG----FRFVTGSPDRTIIMWDLDGNILGNWE 350 (519)
T ss_pred hhhhcccCcCCCcceeEEccCC----ceeEecCCCCcEEEecCCcchhhccc
Confidence 9988877788999999999995 23444444655555666665555564
No 74
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.55 E-value=9.1e-07 Score=99.73 Aligned_cols=134 Identities=19% Similarity=0.110 Sum_probs=98.0
Q ss_pred CCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
-+++++++. |++++.++++|...+|++-. + +....+.-......|.+-++..-||||++|||++++|.+++|
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~---~---~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLN---H---QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccC---C---CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEE
Confidence 345666665 58999999999999999832 1 111112211234568999999999999999999999999999
Q ss_pred EECCCC-ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE
Q 000170 523 WDVQRA-SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 523 WDl~~g-~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
|++.+- +.-..+. +|+..|+..+|+.|+ ..++++..++ ..|+|.....+.-+...|.+...|
T Consensus 242 wn~~~~~kle~~l~-gh~rWvWdc~FS~dg------~YlvTassd~--------~~rlW~~~~~k~v~qy~gh~K~~v 304 (311)
T KOG0315|consen 242 WNTDDFFKLELVLT-GHQRWVWDCAFSADG------EYLVTASSDH--------TARLWDLSAGKEVRQYQGHHKAAV 304 (311)
T ss_pred EecCCceeeEEEee-cCCceEEeeeeccCc------cEEEecCCCC--------ceeecccccCceeeecCCcccccE
Confidence 999987 5556665 999999999999873 2444444443 367888767777777888444444
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.54 E-value=7.8e-07 Score=114.08 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC--------------------------------Cc------------
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR--------------------------------AS------------ 529 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~--------------------------------g~------------ 529 (1950)
.|.|+|+||.||+||+|||+|++||-|+||.+.. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6999999999999999999999999999999976 00
Q ss_pred --e--------------eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 530 --A--------------AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 530 --~--------------l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
+ ++.+. ||+..|+.|.|+.+ +.++.++-|+ | +|||..-.-+|.|+|.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWSKn------~fLLSSSMDK--------T-VRLWh~~~~~CL~~F~- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFK-GHTADILDLSWSKN------NFLLSSSMDK--------T-VRLWHPGRKECLKVFS- 407 (712)
T ss_pred CccccCCCccccccccchhhhh-ccchhheecccccC------CeeEeccccc--------c-EEeecCCCcceeeEEe-
Confidence 0 01222 89999999999975 4566666555 4 8999865556899997
Q ss_pred CccccEEEeecccccc
Q 000170 594 QKTGIVLSASPLLFDE 609 (1950)
Q Consensus 594 ~~~g~Vla~spLp~~~ 609 (1950)
|...|-++.-.|.|+
T Consensus 408 -HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDD 422 (712)
T ss_pred -cCCeeEEEEecccCC
Confidence 777785555555543
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.5e-06 Score=109.07 Aligned_cols=132 Identities=20% Similarity=0.201 Sum_probs=94.8
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCC-CCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 444 HGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDR-SPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 444 ~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~-h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
-..+|++..+ |++||||+.+|.|.|||.+. .+.+. .... |.+.|.||+|+ +..+.+|+.+|.|
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~---------~k~~~---~~~~~h~~rvg~laW~--~~~lssGsr~~~I 282 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE---------QKKTR---TLRGSHASRVGSLAWN--SSVLSSGSRDGKI 282 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhh---------ccccc---cccCCcCceeEEEecc--CceEEEecCCCcE
Confidence 5778999988 58999999999999999853 12222 2233 88999999998 8899999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE-
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV- 599 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V- 599 (1950)
..||+..++.......+|...|+.++|++| +..++.++ .+..|+ +|+...-+-...+.+ |.+-|
T Consensus 283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~d-----~~~lASGg-nDN~~~--------Iwd~~~~~p~~~~~~-H~aAVK 347 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTLQGHRQEVCGLKWSPD-----GNQLASGG-NDNVVF--------IWDGLSPEPKFTFTE-HTAAVK 347 (484)
T ss_pred EEEEEecchhhhhhhhcccceeeeeEECCC-----CCeeccCC-CccceE--------eccCCCccccEEEec-cceeee
Confidence 999999988665533499999999999998 33344444 433333 343222222333445 77777
Q ss_pred -EEeec
Q 000170 600 -LSASP 604 (1950)
Q Consensus 600 -la~sp 604 (1950)
+++||
T Consensus 348 A~awcP 353 (484)
T KOG0305|consen 348 ALAWCP 353 (484)
T ss_pred EeeeCC
Confidence 56666
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.54 E-value=2.3e-07 Score=121.28 Aligned_cols=139 Identities=22% Similarity=0.331 Sum_probs=97.0
Q ss_pred cEEEEEcC--CEEEEEe--CCCcEEEEeCCCCCC-ccC-ccc-ceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 447 PQVLAVHP--SFIAVGM--SKGAIVVVPGKYSAH-HRD-SMD-SKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGt--s~G~I~vfd~k~~~~-~~d-~~~-~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+-+|.+++ ..+|+|+ .||.++||+...-.+ ..+ +.+ .+.+| +-..|.++|+|+.||+||++||+|+.|+.
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~---~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLC---TMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhe---eeccccCceeEEEECCCCCeEeeccCcce
Confidence 56777876 5788898 899999998743221 000 011 11112 34679999999999999999999999999
Q ss_pred EEEEECCC----------C--------ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccc
Q 000170 520 VTVWDVQR----------A--------SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 520 I~lWDl~~----------g--------~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~ 581 (1950)
|.+|+... | ++..++. +|.+-|..|+|+|++ .-.+.++.|.. |. +|+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Wsp~~----~~lvS~s~Dns--Vi--------iwn 157 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWSPDD----SLLVSVSLDNS--VI--------IWN 157 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccCCCc----cEEEEecccce--EE--------EEc
Confidence 99999883 1 2445665 899999999999974 22233333443 33 344
Q ss_pred ceeeeEEeecCCCccccE--EEeec
Q 000170 582 RFSIKTQCLLDGQKTGIV--LSASP 604 (1950)
Q Consensus 582 ~~t~~s~~ll~g~~~g~V--la~sp 604 (1950)
..+.+..+++.| |.+.| +++.|
T Consensus 158 ~~tF~~~~vl~~-H~s~VKGvs~DP 181 (942)
T KOG0973|consen 158 AKTFELLKVLRG-HQSLVKGVSWDP 181 (942)
T ss_pred cccceeeeeeec-ccccccceEECC
Confidence 445577888999 99998 56655
No 78
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=3.6e-07 Score=110.34 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=104.6
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcc-cceeeeecccCCCCCCCeEEEEEcCCC--CEEEEe
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSM-DSKMMMLGLLGDRSPAPVTAMCFNQPG--DLLLAG 514 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~-~~k~~~l~~~~~~h~~~VtsLafS~DG--~~LasG 514 (1950)
+..+|-++|||.+++ .+|.+|+.||.|++|++-. .-.+++. ..+.++ ....|+-+||.+-..+.| .+|++.
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-lv~a~~~~~~~p~~---~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-LVSADNDHSVKPLH---IFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-ecccccCCCcccee---eeccCcceeEEEEecCCCccceEEEe
Confidence 456889999999985 7999999999999998621 1111111 222221 235689999999887764 589999
Q ss_pred cCCCcEEEEECCCCceeeee--------------------------------------------------------ccCc
Q 000170 515 YADGHVTVWDVQRASAAKVI--------------------------------------------------------TGEH 538 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl--------------------------------------------------------~~~H 538 (1950)
++|.+|++||+..|.++.++ ..||
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 99999999999998754211 1267
Q ss_pred CC--CeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE--EEeecc
Q 000170 539 TS--PVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV--LSASPL 605 (1950)
Q Consensus 539 ~~--~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V--la~spL 605 (1950)
.. +|++++.+-| .++++|||.+|. +++|+.++-+|-+.+.. ..|+| +.+.||
T Consensus 275 ~~~~~ITcLais~D------gtlLlSGd~dg~--------VcvWdi~S~Q~iRtl~~-~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 275 ENESAITCLAISTD------GTLLLSGDEDGK--------VCVWDIYSKQCIRTLQT-SKGPVTNLQINPL 330 (476)
T ss_pred cCCcceeEEEEecC------ccEEEeeCCCCC--------EEEEecchHHHHHHHhh-hccccceeEeecc
Confidence 65 9999999976 379999999984 45566666666565553 45677 555554
No 79
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=6.7e-07 Score=113.66 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=101.5
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|-.+-|.+..+++|+ .+.++|+.|-+|+||+++. .+|++ +..+|-.-|+.+.|.+.--|++|++.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~---------rrclf---tL~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT---------RRCLF---TLLGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEeccc---------ceehh---hhccccceeEEeeccCCCceEEEccC
Confidence 5777899999999997 6899999999999999864 13443 66779999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSV 576 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~ 576 (1950)
|.+|+||+.++++|+.+++ ||+.-|.+..|.|-+ .-.+-.|.|..-+||-.++-+
T Consensus 114 DQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptE----DlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTE----DLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred CCeEEEEeccCCceEEEEe-cCceEEEeeccCCcc----ceEEEecccceEEEEeecchh
Confidence 9999999999999999998 999999999999841 223344448877777777643
No 80
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.50 E-value=4.7e-06 Score=107.41 Aligned_cols=113 Identities=18% Similarity=0.304 Sum_probs=92.2
Q ss_pred CCC-cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 444 HGS-PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 444 ~G~-pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
.|. ++||+...+++++|+.+++|.+|.+-.+ +...+. ...+-|+++++||.+|+++|+|+.|-.|++
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~-------~~~~iL-----~Rftlp~r~~~v~g~g~~iaagsdD~~vK~ 122 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG-------EEDTIL-----ARFTLPIRDLAVSGSGKMIAAGSDDTAVKL 122 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCC-------Ccccee-----eeeeccceEEEEecCCcEEEeecCceeEEE
Confidence 444 6899999999999999999999987332 111111 235679999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
-++..+...+++. +|..+|++|.|.|. + ..+.+++.+|.|..+.+.
T Consensus 123 ~~~~D~s~~~~lr-gh~apVl~l~~~p~-----~-~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 123 LNLDDSSQEKVLR-GHDAPVLQLSYDPK-----G-NFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred Eeccccchheeec-ccCCceeeeeEcCC-----C-CEEEEEecCceEEEEEcc
Confidence 9999999888886 99999999999986 3 455556788888877765
No 81
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.50 E-value=8.3e-08 Score=115.99 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=100.5
Q ss_pred ccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 440 FRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
+..+.-.++|+...+ .++++|+.||.|.||++.. +.+++. +-.+|..+|.+++||.+|+.+++++-
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------~~~~lr---tf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------DRRCLR---TFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------Ccceeh---hhhcchhhhhhhhccccCCeeeeeec
Confidence 444445566665554 6799999999999999842 123332 44569999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKT 596 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~ 596 (1950)
|+.|++||+.||+|+..+.. ...+++|.|.|++ .++.++++- +| +++.|+.++.+-..-++. |.
T Consensus 279 D~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~----~n~fl~G~s-d~--------ki~~wDiRs~kvvqeYd~-hL 342 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDN----QNIFLVGGS-DK--------KIRQWDIRSGKVVQEYDR-HL 342 (503)
T ss_pred ceeeeeeccccceEEEEEec--CCCceeeecCCCC----CcEEEEecC-CC--------cEEEEeccchHHHHHHHh-hh
Confidence 99999999999999887743 3478899999983 344444443 33 345565555543333444 77
Q ss_pred ccEEEeeccc
Q 000170 597 GIVLSASPLL 606 (1950)
Q Consensus 597 g~Vla~spLp 606 (1950)
|.|+++.-++
T Consensus 343 g~i~~i~F~~ 352 (503)
T KOG0282|consen 343 GAILDITFVD 352 (503)
T ss_pred hheeeeEEcc
Confidence 7787777766
No 82
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=9.7e-07 Score=110.50 Aligned_cols=116 Identities=22% Similarity=0.387 Sum_probs=88.5
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+.|.+-++|+++ ..++||+.+|.+..|+... + .+..........+.|-+|+|+++|+.||+|+.||-|
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p-----~-----~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGP-----D-----KITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCC-----c-----eEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 567777777775 7899999999777776521 1 122111234457899999999999999999999999
Q ss_pred EEEECCCCceeeee-------ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 521 TVWDVQRASAAKVI-------TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl-------~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
++||+.+|..++.+ ..+-..-||+|.|..+ ..++|+|+.|.|-++++-
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-------~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-------STIASGDSAGTVTFWDSI 233 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-------CcEEEecCCceEEEEccc
Confidence 99999999877622 1123456999999955 589999999988887764
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.48 E-value=5.4e-07 Score=114.54 Aligned_cols=100 Identities=23% Similarity=0.486 Sum_probs=83.0
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEec
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~ 515 (1950)
.|+.-+..+|||..+| +.+|||+.+|.|.+||+|.+ +.++ ......|+||+++|..||. .||+|.
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---------kil~---sFk~d~g~VtslSFrtDG~p~las~~ 264 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---------KILM---SFKQDWGRVTSLSFRTDGNPLLASGR 264 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccC---------cEEE---EEEccccceeEEEeccCCCeeEEecc
Confidence 4555567789999998 78999999999999999752 2222 1122369999999999998 677788
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
..|++.+||+.+.+.+..+.++|.+.|+.+.|.+.
T Consensus 265 ~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ 299 (910)
T KOG1539|consen 265 SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG 299 (910)
T ss_pred CCceEEEEEcCCCeeeeeeeccccCCcccceecCC
Confidence 88999999999999988888899999999999985
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.47 E-value=1.3e-06 Score=104.44 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=89.9
Q ss_pred cCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..+.++.+..+ +.|+...+++|+.-..|++.+ .+++.. ..+...-.+|+.+|.|||-.+++|..||.|
T Consensus 302 h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g---------~~lt~v-s~~~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 302 HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG---------SQLTVV-SDETSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred ccccceeeeeccCCcEEEEecCCceEEEEEccCC---------cEEEEE-eeccccceeEEeeEcCCceEEeccCCCceE
Confidence 44556666665 489999999999999998542 233321 222233469999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
++||+.++.....+. ||+++|..|+|..+ +..+++.+|++- |+++.+
T Consensus 372 kiwdlks~~~~a~Fp-ght~~vk~i~FsEN-----GY~Lat~add~~-V~lwDL 418 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFP-GHTGPVKAISFSEN-----GYWLATAADDGS-VKLWDL 418 (506)
T ss_pred EEEEcCCccccccCC-CCCCceeEEEeccC-----ceEEEEEecCCe-EEEEEe
Confidence 999999999887886 89999999999975 788888888863 555554
No 85
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=1.7e-06 Score=111.05 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=85.2
Q ss_pred ccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCC---------------------------Cc-----cCcc--c---
Q 000170 442 RDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSA---------------------------HH-----RDSM--D--- 482 (1950)
Q Consensus 442 ~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~---------------------------~~-----~d~~--~--- 482 (1950)
..-|++-|+.++ |.|+|+|+.||.|+||.+.... .+ .... +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 567999998887 5899999999999999875400 00 0000 0
Q ss_pred ceeeee-------cc----cCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCC
Q 000170 483 SKMMML-------GL----LGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQD 551 (1950)
Q Consensus 483 ~k~~~l-------~~----~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~ 551 (1950)
..+..+ .. ...+|.+.|-.|+||.+ .+|++.+.|.+|+||++.+.+|++++ .|+.-||+|+|.|-|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccC
Confidence 000000 00 01359999999999875 57899999999999999999999999 699999999999964
Q ss_pred CccCCceEEEEecCC
Q 000170 552 SQVTRQFKAVTGDTK 566 (1950)
Q Consensus 552 ~~~~~~~~~vssD~~ 566 (1950)
.|.++--|.|.+
T Consensus 422 ---DryFiSGSLD~K 433 (712)
T KOG0283|consen 422 ---DRYFISGSLDGK 433 (712)
T ss_pred ---CCcEeecccccc
Confidence 244444444443
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=1.1e-06 Score=109.39 Aligned_cols=110 Identities=19% Similarity=0.232 Sum_probs=93.4
Q ss_pred CcEEEEEcCC--EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAVHPS--FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~s~~--~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
++-++|.++. .|+.|+..+.+++||-++. .+.+. ..+|+..|.+|-.++||+.+++|+.||+|+||
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~--------~kimk----LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--------KKIMK----LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccc--------cceee----eeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 4577888864 8999999999999998763 12222 24699999999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|+.-..|+.++. .|...||.+.-.++ -..+.+||.+|.|+.-..
T Consensus 241 dLgqQrCl~T~~-vH~e~VWaL~~~~s------f~~vYsG~rd~~i~~Tdl 284 (735)
T KOG0308|consen 241 DLGQQRCLATYI-VHKEGVWALQSSPS------FTHVYSGGRDGNIYRTDL 284 (735)
T ss_pred eccccceeeeEE-eccCceEEEeeCCC------cceEEecCCCCcEEeccc
Confidence 999999999997 99988999988853 568999999999988765
No 87
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.45 E-value=4.3e-06 Score=101.15 Aligned_cols=134 Identities=18% Similarity=0.235 Sum_probs=103.8
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...+.+.|+|+++ .|||.|.-+.+|.|||..+. ..+. ...+|.++|.+++|-..-.-|.+++.|+.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~---------ehv~---~~~ghr~~V~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL---------EHVK---VFKGHRGAVSSLAFRKGTSELYSASADRS 267 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCccc---------chhh---cccccccceeeeeeecCccceeeeecCCc
Confidence 4566678888885 89999999999999998431 1111 23569999999999988889999999999
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
|++|++.--..+.++- ||.+.|..|.-+.- ...+.|++=++ | +|+|.. +-+++-+|.| +.+.+
T Consensus 268 vkvw~~~~~s~vetly-GHqd~v~~IdaL~r-----eR~vtVGgrDr--------T-~rlwKi-~eesqlifrg-~~~si 330 (479)
T KOG0299|consen 268 VKVWSIDQLSYVETLY-GHQDGVLGIDALSR-----ERCVTVGGRDR--------T-VRLWKI-PEESQLIFRG-GEGSI 330 (479)
T ss_pred eEEEehhHhHHHHHHh-CCccceeeechhcc-----cceEEeccccc--------e-eEEEec-cccceeeeeC-CCCCe
Confidence 9999999888888887 99999999987753 33455554333 3 788875 6778999999 77666
Q ss_pred EEeec
Q 000170 600 LSASP 604 (1950)
Q Consensus 600 la~sp 604 (1950)
-+++.
T Consensus 331 dcv~~ 335 (479)
T KOG0299|consen 331 DCVAF 335 (479)
T ss_pred eeEEE
Confidence 44333
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.44 E-value=1e-06 Score=104.98 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=84.7
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..|.+|++..+. ..|.+.+-|.++.++|.+.. +. +.++...+-...+-+|.+.|||||.|+|+|+.||.|
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-------eI-~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-------EI-RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSV 411 (459)
T ss_pred cCcceeeEeeccCCeEEeeecCCCceeeeecccc-------cE-EEEeeccccccccccceeEECCCCceeeeccCCCcE
Confidence 466788877763 55666688999999999752 11 112211222233459999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCC-CeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 521 TVWDVQRASAAKVITGEHTS-PVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~-~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
+||++.+|++.+.+...|.. +|+++.|.+.| ..++++|.++.|
T Consensus 412 ~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG------~~Llsadk~~~v 455 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG------SGLLSADKQKAV 455 (459)
T ss_pred EEEEccCceEEEEeccCCCCcceEEEEEcCCC------chhhcccCCcce
Confidence 99999999999999877754 89999999853 357777777543
No 89
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.44 E-value=8.3e-07 Score=99.28 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=89.6
Q ss_pred CcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 446 SPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
.+.+|.++...|+.|+.||+++.||++.+ . + ..+-...||+|++||+||..+++|+.|++|+|.|-
T Consensus 147 ~V~Si~v~~heIvaGS~DGtvRtydiR~G---------~-l----~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSVDGTVRTYDIRKG---------T-L----SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDK 212 (307)
T ss_pred ceeEEEecccEEEeeccCCcEEEEEeecc---------e-e----ehhhcCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence 46788888888999999999999999743 1 1 12334679999999999999999999999999999
Q ss_pred CCCceeeeeccCcCCCe--EEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 526 QRASAAKVITGEHTSPV--VHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 526 ~~g~~l~tl~~~H~~~I--~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.+|+.++... ||...= +..+|+ ++.+.++++.++|.||++.+
T Consensus 213 ~tGklL~sYk-Ghkn~eykldc~l~------qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 213 ETGKLLKSYK-GHKNMEYKLDCCLN------QSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred chhHHHHHhc-ccccceeeeeeeec------ccceeEEeccCCceEEEEEe
Confidence 9999999997 886543 444566 35689999999999999875
No 90
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.39 E-value=8.2e-07 Score=104.95 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=79.2
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCCcEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADGHVTVW 523 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG~I~lW 523 (1950)
.+|++.++ .+||.|+++-.|++||-|.+ ..+... .+..+|.+.|+++.+||-.. +|++|+-||+++||
T Consensus 303 l~~i~~~~~~~Ll~~gssdr~irl~DPR~~-------~gs~v~--~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 303 LNCISYSPLSKLLASGSSDRHIRLWDPRTG-------DGSVVS--QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eeEeecccccceeeecCCCCceeecCCCCC-------CCceeE--EeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 48898887 78999999999999998753 122222 24567999999999999765 78999999999999
Q ss_pred ECCCCc-eeeeeccCcCCCeEEEEEecC
Q 000170 524 DVQRAS-AAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 524 Dl~~g~-~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|+.+.+ .+.++. +|...|.++.|...
T Consensus 374 DvRS~k~plydI~-~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 374 DVRSTKAPLYDIA-GHNDKVLSVDWNEG 400 (423)
T ss_pred EeccCCCcceeec-cCCceEEEEeccCC
Confidence 999887 889997 99999999999953
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.37 E-value=8e-07 Score=101.81 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=87.0
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE-EEEecCCCcEEEEECCCC
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL-LLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~-LasG~~dG~I~lWDl~~g 528 (1950)
+|.+..+||+||-+-.|++-|++.+. + ..++.+|++.|-++.|||-..| ||+|++||.|++||+.+.
T Consensus 154 ~a~sHcLiA~gtr~~~VrLCDi~SGs-----------~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 154 MAMSHCLIAAGTRDVQVRLCDIASGS-----------F-SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred hhhcceEEEEecCCCcEEEEeccCCc-----------c-eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence 34444789999999999999997641 1 2245679999999999999885 789999999999999987
Q ss_pred -ceeeee-------------ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee
Q 000170 529 -SAAKVI-------------TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK 586 (1950)
Q Consensus 529 -~~l~tl-------------~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~ 586 (1950)
.|..++ ..+|.+.|.+++|+.| .++....+.|++ +|+|+...++
T Consensus 222 sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd----~~~l~~~gtd~r----------~r~wn~~~G~ 279 (397)
T KOG4283|consen 222 SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD----ARYLASCGTDDR----------IRVWNMESGR 279 (397)
T ss_pred cceeEEeecccCccCccccccccccceeeeeeeccc----chhhhhccCccc----------eEEeecccCc
Confidence 454433 1267889999999988 477888888885 6778765554
No 92
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.36 E-value=2.8e-06 Score=108.25 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=93.7
Q ss_pred cccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|+..-+.++|++++ |++..+|++.|+|-+||++++.|+. . + + ....|.++|+.|+...-++.+++++.
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~------s-f-~-~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK------S-F-G-DSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec------c-c-c-cCccccCceeEEEecCCCceEEEccC
Confidence 466677788888887 5899999999999999997765431 1 1 1 23568999999999777888999999
Q ss_pred CCcEEEEECCCCcee-----------------------------------------eeeccCcCCCeEEEEEecCCCccC
Q 000170 517 DGHVTVWDVQRASAA-----------------------------------------KVITGEHTSPVVHTLFLGQDSQVT 555 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l-----------------------------------------~tl~~~H~~~I~~v~F~~d~~~~~ 555 (1950)
+|.++.||.+++..+ +.++ ||+.+|+..+|++|
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~-gh~nritd~~FS~D----- 587 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFW-GHGNRITDMTFSPD----- 587 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhh-ccccceeeeEeCCC-----
Confidence 999999999987532 1223 79999999999998
Q ss_pred CceEEEEecCCceEEEEcccccccccceee
Q 000170 556 RQFKAVTGDTKGLVQLHSLSVVPLLNRFSI 585 (1950)
Q Consensus 556 ~~~~~vssD~~G~V~~h~ft~~rl~~~~t~ 585 (1950)
+..+++++-++ + +|+|+.-+.
T Consensus 588 grWlisasmD~--------t-Ir~wDlpt~ 608 (910)
T KOG1539|consen 588 GRWLISASMDS--------T-IRTWDLPTG 608 (910)
T ss_pred CcEEEEeecCC--------c-EEEEeccCc
Confidence 45666655443 2 677775443
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.35 E-value=1.7e-06 Score=98.34 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=86.6
Q ss_pred CCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
...-||++++ .|+|+|+.|-.|-+||.. ++ +|+. ....+.=||+.|+||.||++||+|++|--|-|
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~---------EL--iC~R-~isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVD---------EL--ICER-CISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChh---------Hh--hhhe-eeccccCceEEEEeccCcceeeccCccceEEe
Confidence 3446777775 899999999999999982 22 3432 34567789999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
=++++|..+..+ .|.++-..|+|.|. ++.++-++|+.
T Consensus 258 A~vetGd~~~eI--~~~~~t~tVAWHPk-----~~LLAyA~ddk 294 (313)
T KOG1407|consen 258 AEVETGDRVWEI--PCEGPTFTVAWHPK-----RPLLAYACDDK 294 (313)
T ss_pred EecccCCeEEEe--eccCCceeEEecCC-----CceeeEEecCC
Confidence 999999988777 58899999999996 88888888886
No 94
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5.7e-06 Score=93.35 Aligned_cols=164 Identities=20% Similarity=0.255 Sum_probs=109.7
Q ss_pred ceeeeEEecCChhHHHHhhhccccccCCCcEEEEEc----CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC
Q 000170 418 TTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVH----PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD 493 (1950)
Q Consensus 418 ~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s----~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~ 493 (1950)
-++.+|.+.+-.. |..|. +.+.+.|.+.-++-. |.+||+.+.||+|+||.-.. + +......-.
T Consensus 33 ~tVkIf~v~~n~~-s~ll~--~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~---------g-~w~k~~e~~ 99 (299)
T KOG1332|consen 33 GTVKIFEVRNNGQ-SKLLA--ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN---------G-RWTKAYEHA 99 (299)
T ss_pred ccEEEEEEcCCCC-ceeee--EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC---------C-chhhhhhhh
Confidence 3566777766554 33333 677889998776653 37899999999999997521 1 111001224
Q ss_pred CCCCCeEEEEEcCC--CCEEEEecCCCcEEEEECCCC--ceeeeeccCcCCCeEEEEEecCCCc---c-----CCceEEE
Q 000170 494 RSPAPVTAMCFNQP--GDLLLAGYADGHVTVWDVQRA--SAAKVITGEHTSPVVHTLFLGQDSQ---V-----TRQFKAV 561 (1950)
Q Consensus 494 ~h~~~VtsLafS~D--G~~LasG~~dG~I~lWDl~~g--~~l~tl~~~H~~~I~~v~F~~d~~~---~-----~~~~~~v 561 (1950)
.|.++|++|+|-|. |-.||+|+.||+|.+.+...- -....+...|...|++|.|.|..-. . .+-..++
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv 179 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV 179 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceee
Confidence 58999999999886 679999999999999988753 3445566699999999999985111 0 1112355
Q ss_pred EecCCceEEEEcccccccccceee---eEEeecCCCccccE--EEeec
Q 000170 562 TGDTKGLVQLHSLSVVPLLNRFSI---KTQCLLDGQKTGIV--LSASP 604 (1950)
Q Consensus 562 ssD~~G~V~~h~ft~~rl~~~~t~---~s~~ll~g~~~g~V--la~sp 604 (1950)
|+-.+-. +++|. +.- .-.+.|.| |..+| +|.+|
T Consensus 180 SgGcDn~--------VkiW~-~~~~~w~~e~~l~~-H~dwVRDVAwaP 217 (299)
T KOG1332|consen 180 SGGCDNL--------VKIWK-FDSDSWKLERTLEG-HKDWVRDVAWAP 217 (299)
T ss_pred ccCCccc--------eeeee-cCCcchhhhhhhhh-cchhhhhhhhcc
Confidence 5544433 44453 222 23466888 99999 67777
No 95
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.33 E-value=4.2e-06 Score=95.35 Aligned_cols=141 Identities=13% Similarity=0.207 Sum_probs=99.8
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCcc--C-cccce--------eeee----------------c
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHR--D-SMDSK--------MMML----------------G 489 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~--d-~~~~k--------~~~l----------------~ 489 (1950)
..+.+.|++-||.++- +++..|+.|.++++||++++---+ . +...+ .+++ .
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fd 126 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFD 126 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEE
Confidence 4467899999999985 789999999999999997642000 0 00000 0000 0
Q ss_pred cc-------C-------CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccC
Q 000170 490 LL-------G-------DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVT 555 (1950)
Q Consensus 490 ~~-------~-------~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~ 555 (1950)
.. . ..+.+.+|+.-|+|-|++|++|+.||.|..||+.+|+.+..-...|+..|+.++|++|
T Consensus 127 i~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d----- 201 (327)
T KOG0643|consen 127 IRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD----- 201 (327)
T ss_pred ccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCC-----
Confidence 00 0 1134789999999999999999999999999999997665444589999999999997
Q ss_pred CceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 556 RQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 556 ~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
.+..|++..+ +.-++|++.+.+.++++.-
T Consensus 202 -~T~FiT~s~D--------ttakl~D~~tl~v~Kty~t 230 (327)
T KOG0643|consen 202 -RTYFITGSKD--------TTAKLVDVRTLEVLKTYTT 230 (327)
T ss_pred -cceEEecccC--------ccceeeeccceeeEEEeee
Confidence 3455555333 2357788777777777754
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.32 E-value=1e-06 Score=111.35 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=76.2
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.|+.+.-++.-+++++ .+.|.+...|.+++||+++- .++. .+...|+|+|.|+.|+|++.|||+|+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp--------~r~~---~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP--------DRCE---KKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCc--------hhHH---HHhhcccCceEEEeecCCCceeeecC
Confidence 3444555555555554 78999999999999999741 1121 14567999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeccCc-CCCeEEEEEecC
Q 000170 516 ADGHVTVWDVQRASAAKVITGEH-TSPVVHTLFLGQ 550 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H-~~~I~~v~F~~d 550 (1950)
.|+.|+|||+.+++...... .| ..+|..|+|-|.
T Consensus 240 RDK~vkiWd~t~~~~~~~~t-InTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHT-INTIAPVGRVKWRPA 274 (839)
T ss_pred CCccEEEEeccCCCccceeE-EeecceeeeeeeccC
Confidence 99999999998765332222 33 479999999997
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.31 E-value=3.6e-06 Score=102.41 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=76.0
Q ss_pred CCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 445 GSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 445 G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...||-.-++ ..+.+.+.||++++||+.-. ....+.+.-. ...+..-+||+-+||+||+++|+|..||.|.
T Consensus 269 a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~-----k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT-----KSQLQVIKTK-PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred eeeeccccccCcccceEEecCCCcEEEEecCCc-----hhheeEEeec-cCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 3357766666 45777789999999998311 0111222211 2224566899999999999999999999999
Q ss_pred EEECCCCc--eeeeeccCcCC--CeEEEEEecCCCccCCceEEE-EecCC
Q 000170 522 VWDVQRAS--AAKVITGEHTS--PVVHTLFLGQDSQVTRQFKAV-TGDTK 566 (1950)
Q Consensus 522 lWDl~~g~--~l~tl~~~H~~--~I~~v~F~~d~~~~~~~~~~v-ssD~~ 566 (1950)
+||..+.. ....+.++|.. .|++|+|+.| ++.++. +.|+.
T Consensus 343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d-----g~~LlSRg~D~t 387 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD-----GNYLLSRGFDDT 387 (641)
T ss_pred eeecCCcccccceEeeeccCCCCceeEEEeccc-----cchhhhccCCCc
Confidence 99985443 23345569975 9999999998 344444 44554
No 98
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=9.2e-06 Score=92.94 Aligned_cols=142 Identities=17% Similarity=0.226 Sum_probs=102.4
Q ss_pred ccCCCcEEEEEcCC---EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 442 RDHGSPQVLAVHPS---FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 442 ~~~G~pt~ia~s~~---~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
..-|.+-.+|.++. .||+|+.|..|++|+... + +.-. |.....++|.-.|+++||||.|++||+|+-|+
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~---~s~~----ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-G---DSWT----CKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-C---CcEE----EEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 34566777888875 799999999999999752 1 1111 21112357999999999999999999999999
Q ss_pred cEEEEECCCC--ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcc
Q 000170 519 HVTVWDVQRA--SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKT 596 (1950)
Q Consensus 519 ~I~lWDl~~g--~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~ 596 (1950)
++.||.=..+ +|+.++. ||.+.|-+|+|+.+ +..++.++=++ .||.+... .--.++|.-+|.+ |+
T Consensus 84 t~~Iw~k~~~efecv~~lE-GHEnEVK~Vaws~s-----G~~LATCSRDK-SVWiWe~d-----eddEfec~aVL~~-Ht 150 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLE-GHENEVKCVAWSAS-----GNYLATCSRDK-SVWIWEID-----EDDEFECIAVLQE-HT 150 (312)
T ss_pred eEEEeecCCCceeEEeeee-ccccceeEEEEcCC-----CCEEEEeeCCC-eEEEEEec-----CCCcEEEEeeecc-cc
Confidence 9999987755 5888886 99999999999987 45566655333 46655431 1012456677777 66
Q ss_pred ccE--EEeec
Q 000170 597 GIV--LSASP 604 (1950)
Q Consensus 597 g~V--la~sp 604 (1950)
--| +.++|
T Consensus 151 qDVK~V~WHP 160 (312)
T KOG0645|consen 151 QDVKHVIWHP 160 (312)
T ss_pred ccccEEEEcC
Confidence 555 55555
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=5.1e-06 Score=93.73 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=95.8
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEecCCCcEEEEECCCCc
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGYADGHVTVWDVQRAS 529 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~~dG~I~lWDl~~g~ 529 (1950)
+-++.||+.++||+|+||..+.+. + .+ .. .++.+|.|||+-++|-+ -|+.||+++-||.|.||.-.+|.
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~-----~-s~-ll--~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~ 91 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNG-----Q-SK-LL--AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR 91 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCC-----C-ce-ee--eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence 346789999999999999986421 1 12 11 25678999999999988 89999999999999999999884
Q ss_pred ee--eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE--EEeec
Q 000170 530 AA--KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV--LSASP 604 (1950)
Q Consensus 530 ~l--~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V--la~sp 604 (1950)
=. .... +|.+.|++|+|-|.+ -...+.++.++|.|-...+.--+.|. +.++..- |.--| ++.+|
T Consensus 92 w~k~~e~~-~h~~SVNsV~waphe----ygl~LacasSDG~vsvl~~~~~g~w~-----t~ki~~a-H~~GvnsVswap 159 (299)
T KOG1332|consen 92 WTKAYEHA-AHSASVNSVAWAPHE----YGLLLACASSDGKVSVLTYDSSGGWT-----TSKIVFA-HEIGVNSVSWAP 159 (299)
T ss_pred hhhhhhhh-hhcccceeecccccc----cceEEEEeeCCCcEEEEEEcCCCCcc-----chhhhhc-cccccceeeecC
Confidence 22 2233 889999999999863 23567777788888877764222342 3444444 55445 44444
No 100
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.29 E-value=7.8e-05 Score=94.65 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=89.1
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
-||++.+.+|||+|++.|.|.+|+...+ +...+ +..+..+.++++++|++..++|+|.++|.|.++-++
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~---------~~~~~--~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTG---------EMRKL--KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCch---------hhhcc--cccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 4999999999999999999999997432 11111 223356889999999999999999999999999998
Q ss_pred CCcee--e---eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 527 RASAA--K---VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 527 ~g~~l--~---tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
++..- . ....-|...|+.++|+.++ ..+-+||+.|.|.+|.++
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~------~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNG------MKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccc------cEEeecCCCceEEEEEec
Confidence 85421 1 1122467899999999873 679999999999999986
No 101
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.29 E-value=3.2e-06 Score=94.72 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=90.8
Q ss_pred cccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
....|.+.++.++ |+|.....++.+|++|+...+ . ++. +-.+|...|.-++.+.|.+.+|+|+.|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---------~--lik-tYsghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---------A--LIK-TYSGHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeeccccc---------c--eee-eecCCCceeeeccccccccccccCCCCc
Confidence 3467888888877 589999889999999987432 2 221 3356788999999999999999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~ 581 (1950)
.|.+||+++|++.+.+. +|...|+.|+|..+ ..+++|+.-+ ..+|+|+
T Consensus 82 ~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNee------sSVv~SgsfD--------~s~r~wD 129 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEE------SSVVASGSFD--------SSVRLWD 129 (307)
T ss_pred eEEEEEcccCeeeeecc-cccceeeEEEecCc------ceEEEecccc--------ceeEEEE
Confidence 99999999999999996 99999999999965 3455555332 1377886
No 102
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.28 E-value=5e-06 Score=98.47 Aligned_cols=104 Identities=17% Similarity=0.273 Sum_probs=81.9
Q ss_pred CcEEEEEcC--CEEEE--EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc-E
Q 000170 446 SPQVLAVHP--SFIAV--GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH-V 520 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAv--Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~-I 520 (1950)
...+++++. .|+|. .+..|-|++||.- +.+... ....|.++|.|||||+||++||++++.|+ |
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~---------nl~~v~---~I~aH~~~lAalafs~~G~llATASeKGTVI 198 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTI---------NLQPVN---TINAHKGPLAALAFSPDGTLLATASEKGTVI 198 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcc---------cceeee---EEEecCCceeEEEECCCCCEEEEeccCceEE
Confidence 356677765 58887 3567999999972 222222 23469999999999999999999999999 7
Q ss_pred EEEECCCCceeeeeccCc-CCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 521 TVWDVQRASAAKVITGEH-TSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H-~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
|++.+.+|+.+.-+..|- ...|.+++|+++ .+.+.++++..
T Consensus 199 RVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d-----s~~L~~sS~Te 240 (391)
T KOG2110|consen 199 RVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD-----SQFLAASSNTE 240 (391)
T ss_pred EEEEcCCccEeeeeeCCceeeEEEEEEECCC-----CCeEEEecCCC
Confidence 999999999988886555 478999999997 56777777765
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=108.52 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=86.1
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
++++++++ +++|.|++|-.|++-+..- ...+. ...+|.++|.+|.|+|.|.+||+...||.|++||
T Consensus 99 ~r~~~v~g~g~~iaagsdD~~vK~~~~~D-------~s~~~-----~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDTAVKLLNLDD-------SSQEK-----VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ceEEEEecCCcEEEeecCceeEEEEeccc-------cchhe-----eecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 36777765 6999999999999998732 11111 2356999999999999999999999999999999
Q ss_pred CCCCceeeeeccCc-------CCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 525 VQRASAAKVITGEH-------TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 525 l~~g~~l~tl~~~H-------~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
++++.+.+++.+.- +..++.++|.|+ +++.++.+.|..-.||
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk----~g~la~~~~d~~Vkvy 215 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPK----GGTLAVPPVDNTVKVY 215 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCC----CCeEEeeccCCeEEEE
Confidence 99999988886422 356778899998 4888999998874443
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.28 E-value=1.8e-06 Score=99.39 Aligned_cols=133 Identities=17% Similarity=0.261 Sum_probs=97.6
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...-.++++.++| ..+++|+.|++|++||+.. ...|..+-. -....+|.||+|.|.|.+|++|-.--+
T Consensus 170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK-------~saKrA~K~---~qd~~~vrsiSfHPsGefllvgTdHp~ 239 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSK-------TSAKRAFKV---FQDTEPVRSISFHPSGEFLLVGTDHPT 239 (430)
T ss_pred hccCcccceeecchhheEEeccCCCeEEEEeccc-------HHHHHHHHH---hhccceeeeEeecCCCceEEEecCCCc
Confidence 3445578899998 6899999999999999842 112211100 124679999999999999999999999
Q ss_pred EEEEECCCCceeeee--ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 520 VTVWDVQRASAAKVI--TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl--~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
++|||+++.+|...- .++|+.+|++|.+++. +. +-+++..+| -+|+|+..+.+|-..++.-|.|
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t-----~~-lYvTaSkDG--------~IklwDGVS~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSST-----GS-LYVTASKDG--------AIKLWDGVSNRCVRTIGNAHGG 305 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCC-----cc-EEEEeccCC--------cEEeeccccHHHHHHHHhhcCC
Confidence 999999999986432 3589999999999975 33 444444444 2678877777777766653444
Q ss_pred c
Q 000170 598 I 598 (1950)
Q Consensus 598 ~ 598 (1950)
.
T Consensus 306 s 306 (430)
T KOG0640|consen 306 S 306 (430)
T ss_pred c
Confidence 3
No 105
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=3.5e-06 Score=103.64 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=93.5
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeeccc-----CCCCCCCeEEEEEcCCCCEEE
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLL-----GDRSPAPVTAMCFNQPGDLLL 512 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~-----~~~h~~~VtsLafS~DG~~La 512 (1950)
|..+.|.+.||.+++ .+||+||.+|.|-.||.+. ......+-.... +......||+|+|+.||-.+|
T Consensus 171 ~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~------ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 171 FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD------KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred cccccccceeeeecCccceEEecccCceEEEecchh------hhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence 455678889999987 7899999999999999753 122221211111 112334599999999999999
Q ss_pred EecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccce
Q 000170 513 AGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRF 583 (1950)
Q Consensus 513 sG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~ 583 (1950)
+|..+|.|.|||+.+.+.+..-..+-..+|..+.|... ..+..++|.|.. .+|||+.-
T Consensus 245 VGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~----~~q~~v~S~Dk~---------~~kiWd~~ 302 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT----DQQNKVVSMDKR---------ILKIWDEC 302 (703)
T ss_pred eeccCCcEEEEEcccCCceeecccCCccceeeeccccc----CCCceEEecchH---------Hhhhcccc
Confidence 99999999999999988875542233579999999865 356789999996 58999854
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=1.5e-06 Score=104.70 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=81.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec--------------ccCCCCCCCeEEEEEcCC-CCEEEEecCCC
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG--------------LLGDRSPAPVTAMCFNQP-GDLLLAGYADG 518 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~--------------~~~~~h~~~VtsLafS~D-G~~LasG~~dG 518 (1950)
|+|+||||-+-.|.|||+-- .|... -++.|+ ....+|+.+|-+|+|+.. ...||||++|.
T Consensus 192 gNyvAiGtmdp~IeIWDLDI----~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~ 266 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDI----VDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK 266 (463)
T ss_pred cceEEEeccCceeEEecccc----ccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence 48999999999999999721 01100 012222 112358889999999877 55899999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+|++||+.+|+|..++. .|+..|..+.|.+.. ...+++|--+|.|-+-.
T Consensus 267 TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 267 TVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKD 315 (463)
T ss_pred eEEEEEcCCCCcceehh-hcCCceeEEEecCCC-----ceEEEeccccceEEeee
Confidence 99999999999999997 899999999999873 34666666555555544
No 107
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.26 E-value=3.5e-06 Score=105.76 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=113.3
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDR 494 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~ 494 (1950)
-...+.+|..+.... ...++++.+.++|++... ..+.+|+-|.++++|-.. .+. ....+
T Consensus 79 ~D~~i~v~~~~~~~P------~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~-----------~l~---~~l~g 138 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEP------LYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG-----------ELV---YSLQG 138 (745)
T ss_pred ccceEEEEecCCCCc------hhhhhccccceeeeecCCcCceEecccccceEEecch-----------hhh---cccCC
Confidence 444555555533332 335677888899998765 447999999999999652 111 13467
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|+++|+++++=|++ .+++|++|.+|++|.- |++++++. ||+.-|.++++.++ ..++|++.+|.
T Consensus 139 H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~-------~~flScsNDg~------ 201 (745)
T KOG0301|consen 139 HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDD-------SHFLSCSNDGS------ 201 (745)
T ss_pred cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecC-------CCeEeecCCce------
Confidence 99999999999988 7899999999999986 89999998 89999999999976 35677777764
Q ss_pred cccccccceeeeEEeecCCCccccEEEeecc
Q 000170 575 SVVPLLNRFSIKTQCLLDGQKTGIVLSASPL 605 (1950)
Q Consensus 575 t~~rl~~~~t~~s~~ll~g~~~g~Vla~spL 605 (1950)
+|+|+. ++++..-+.| |++.|.+++..
T Consensus 202 --Ir~w~~-~ge~l~~~~g-htn~vYsis~~ 228 (745)
T KOG0301|consen 202 --IRLWDL-DGEVLLEMHG-HTNFVYSISMA 228 (745)
T ss_pred --EEEEec-cCceeeeeec-cceEEEEEEec
Confidence 455663 6777777788 99999888843
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.23 E-value=7.9e-06 Score=93.17 Aligned_cols=101 Identities=17% Similarity=0.187 Sum_probs=83.9
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.|.|..+ |++|.+...|.++-||-. .++. .++ +-.+|+|+|+|++++-+.++|++|++|.+++|||
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s---------~nGe--rlG-ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYS---------LNGE--RLG-TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEe---------cCCc--eee-eecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 4677776 589999999999999943 1122 233 4578999999999999999999999999999999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+.+|+++.++. -+.+|..+.|..+ ++..+++.|..
T Consensus 81 v~tGk~la~~k--~~~~Vk~~~F~~~-----gn~~l~~tD~~ 115 (327)
T KOG0643|consen 81 VETGKQLATWK--TNSPVKRVDFSFG-----GNLILASTDKQ 115 (327)
T ss_pred cCCCcEEEEee--cCCeeEEEeeccC-----CcEEEEEehhh
Confidence 99999998774 5689999999987 57788888774
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.23 E-value=9.7e-06 Score=98.81 Aligned_cols=113 Identities=15% Similarity=0.199 Sum_probs=83.1
Q ss_pred eeeEEecCChhHHHHhhhccccccCCCcEEEEEc-CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCC
Q 000170 420 LGYFDVDANNTITQTIASQAFRRDHGSPQVLAVH-PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAP 498 (1950)
Q Consensus 420 ~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s-~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~ 498 (1950)
+.+|.. .-+.|-+++..+++..+. +-..+. ...+++|+.|+.+++||... +- .. ....+|...
T Consensus 92 V~vfD~-k~r~iLR~~~ah~apv~~---~~f~~~d~t~l~s~sDd~v~k~~d~s~---------a~-v~--~~l~~htDY 155 (487)
T KOG0310|consen 92 VKVFDM-KSRVILRQLYAHQAPVHV---TKFSPQDNTMLVSGSDDKVVKYWDLST---------AY-VQ--AELSGHTDY 155 (487)
T ss_pred EEEecc-ccHHHHHHHhhccCceeE---EEecccCCeEEEecCCCceEEEEEcCC---------cE-EE--EEecCCcce
Confidence 345552 235588998877664432 222232 36788899999999999842 11 11 134679999
Q ss_pred eEEEEEcCC-CCEEEEecCCCcEEEEECCCC-ceeeeeccCcCCCeEEEEEecC
Q 000170 499 VTAMCFNQP-GDLLLAGYADGHVTVWDVQRA-SAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 499 VtsLafS~D-G~~LasG~~dG~I~lWDl~~g-~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|.|.+|+|. +.++++|+-||.|++||+... ..+..+ .|..||-+|.|.|.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lps 207 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPS 207 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCC
Confidence 999999997 558999999999999999887 555555 69999999999985
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.21 E-value=5.1e-06 Score=101.18 Aligned_cols=96 Identities=23% Similarity=0.297 Sum_probs=73.9
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC--CeEEEEEcCCCCEEEEecCCCcEE
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA--PVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~--~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.||+++.++ ..||.|..||.|.+|+.+. ......+. ..+.|.+ .||||+||.||.+|++-+.|++++
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~-------~~v~p~~~--vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGS-------RTVRPVMK--VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCC-------cccccceE--eeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 478888885 7899999999999999632 11111111 2244665 899999999999999999999999
Q ss_pred EEECCCC-ceeeeeccCc-CCCeEEEEEecC
Q 000170 522 VWDVQRA-SAAKVITGEH-TSPVVHTLFLGQ 550 (1950)
Q Consensus 522 lWDl~~g-~~l~tl~~~H-~~~I~~v~F~~d 550 (1950)
+||+... +++++..+-- .-+-+.++|+|+
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCC
Confidence 9999875 5777666433 357899999997
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.21 E-value=7.7e-06 Score=99.09 Aligned_cols=112 Identities=15% Similarity=0.232 Sum_probs=87.4
Q ss_pred ccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEec
Q 000170 440 FRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~ 515 (1950)
.+...|.+.|+++++ ..||+|++||+|.+||+|- ... ++ ....+|...|.+|.|||. .+.||+++
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn-------L~~---~l-h~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN-------LNK---PL-HTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh-------ccc---Cc-eeccCCCcceEEEEeCCCCCceeEecc
Confidence 345677789999997 6799999999999999962 111 22 145679999999999998 56899999
Q ss_pred CCCcEEEEECCCCce-------------eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 516 ADGHVTVWDVQRASA-------------AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~-------------l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
.||.+.+||+.+-.. +.-+.+||+..|....|.|. +...+.|..+++
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~-----ePW~I~SvaeDN 396 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN-----EPWTIASVAEDN 396 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC-----CCeEEEEecCCc
Confidence 999999999986322 22557899999999999997 455666665554
No 112
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.20 E-value=4.7e-06 Score=101.29 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCC-cEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 444 HGS-PQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 444 ~G~-pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
.|. |+|+.+++ +.+.+|+++|.|+-||++.+ + ++ . .-+.|-++|..|.|-++|.+.++.+.|++
T Consensus 298 ~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---------k-vv-q-eYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 298 LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---------K-VV-Q-EYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch---------H-HH-H-HHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 344 68999886 67899999999999999753 2 22 1 22458899999999999999999999999
Q ss_pred EEEEECCCCceeeee---------------------------------------------ccCcC--CCeEEEEEecCCC
Q 000170 520 VTVWDVQRASAAKVI---------------------------------------------TGEHT--SPVVHTLFLGQDS 552 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl---------------------------------------------~~~H~--~~I~~v~F~~d~~ 552 (1950)
|++|+...+..++.+ -.||. +--+.|.|+||+
T Consensus 366 ~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG- 444 (503)
T KOG0282|consen 366 VRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG- 444 (503)
T ss_pred EEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-
Confidence 999999987543211 12664 345678899984
Q ss_pred ccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 553 QVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 553 ~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
-.+++||..|.||.+... +++--+.+.+ |.+.++.+.-.|
T Consensus 445 -----~~l~SGdsdG~v~~wdwk--------t~kl~~~lka-h~~~ci~v~wHP 484 (503)
T KOG0282|consen 445 -----RTLCSGDSDGKVNFWDWK--------TTKLVSKLKA-HDQPCIGVDWHP 484 (503)
T ss_pred -----CeEEeecCCccEEEeech--------hhhhhhcccc-CCcceEEEEecC
Confidence 378999999999998854 3333344555 777776666655
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=7.9e-06 Score=99.11 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=79.4
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+-.|.+.|++.++ .|++.||-.|.|.+|.+++| + .+ ....+|.-+||||.||.||.++.+|+.||.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---------~--LL-~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---------I--LL-NVLSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccc---------c--HH-HHHHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4678899999885 78999999999999998653 2 12 134679999999999999999999999999
Q ss_pred EEEEECCC---------CceeeeeccCcCCCeEEEEEecC
Q 000170 520 VTVWDVQR---------ASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 520 I~lWDl~~---------g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|.+|++.+ .+.++.+. .|+-+|+.+....+
T Consensus 147 V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSG 185 (476)
T ss_pred EEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCC
Confidence 99999863 24456665 89999999988765
No 114
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.2e-06 Score=103.63 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=103.5
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
..+.+.|++=++..+.+|+-+|.|+.||++... ... . ...+|...|.-|+|++||.+||+|+.|+.+.|
T Consensus 259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~---------~~~-~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ---------HVV-S-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI 327 (484)
T ss_pred cCceeEEEeccCceEEEecCCCcEEEEEEecch---------hhh-h-hhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence 677789999999999999999999999997521 111 1 24568999999999999999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeE-EeecCCCccccEEE
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKT-QCLLDGQKTGIVLS 601 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s-~~ll~g~~~g~Vla 601 (1950)
||........++. .|+++|-.++|+|= .+..+|+++-..- ..+++|+..++.. +++..| +.|++
T Consensus 328 wd~~~~~p~~~~~-~H~aAVKA~awcP~----q~~lLAsGGGs~D-------~~i~fwn~~~g~~i~~vdtg---sQVcs 392 (484)
T KOG0305|consen 328 WDGLSPEPKFTFT-EHTAAVKALAWCPW----QSGLLATGGGSAD-------RCIKFWNTNTGARIDSVDTG---SQVCS 392 (484)
T ss_pred ccCCCccccEEEe-ccceeeeEeeeCCC----ccCceEEcCCCcc-------cEEEEEEcCCCcEecccccC---Cceee
Confidence 9998888888886 99999999999985 2445565542210 1256677666553 344444 55765
Q ss_pred eeccc
Q 000170 602 ASPLL 606 (1950)
Q Consensus 602 ~spLp 606 (1950)
+.-.+
T Consensus 393 L~Wsk 397 (484)
T KOG0305|consen 393 LIWSK 397 (484)
T ss_pred EEEcC
Confidence 55544
No 115
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.17 E-value=1.1e-05 Score=96.62 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=94.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCccc-ceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC-------
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMD-SKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ------- 526 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~-~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~------- 526 (1950)
+.+|+|+.|..|++|-+..+.. ... .+...+ ..+..|+.+|+++.|||+|..||+|+.+|.|.+|-..
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~---~~~~~~V~y~-s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEP---GGGDMKVEYL-SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred cceecccCccceeeeeeeecCC---CCCceeEEEe-ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccc
Confidence 4899999999999997743321 111 122232 3567899999999999999999999999999999877
Q ss_pred -C--------CceeeeeccCcCCCeEEEEEecCCCccCCceEEE-EecCCceEEEEcccccccccceeeeEEeecCCCcc
Q 000170 527 -R--------ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAV-TGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKT 596 (1950)
Q Consensus 527 -~--------g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~v-ssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~ 596 (1950)
+ ..+.+++. +|..-|..++|.++ ++.++. +.|.. .++|++..+...+++++ |.
T Consensus 103 d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d-----~~~l~s~s~dns----------~~l~Dv~~G~l~~~~~d-h~ 165 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPD-----SNFLVSGSVDNS----------VRLWDVHAGQLLAILDD-HE 165 (434)
T ss_pred cchhhhCccceEEEEEec-ccccchhhhhccCC-----Cceeeeeeccce----------EEEEEeccceeEeeccc-cc
Confidence 3 23445554 89999999999987 333333 33554 45677666777788888 77
Q ss_pred ccE--EEeeccc
Q 000170 597 GIV--LSASPLL 606 (1950)
Q Consensus 597 g~V--la~spLp 606 (1950)
+-| +++.||-
T Consensus 166 ~yvqgvawDpl~ 177 (434)
T KOG1009|consen 166 HYVQGVAWDPLN 177 (434)
T ss_pred cccceeecchhh
Confidence 776 5665643
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.15 E-value=7.9e-06 Score=103.71 Aligned_cols=111 Identities=19% Similarity=0.345 Sum_probs=88.3
Q ss_pred ccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEE
Q 000170 438 QAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLA 513 (1950)
Q Consensus 438 ~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~Las 513 (1950)
..|..+--+++++.++. .+|.+|+.||+|++||+|.. +.+... -+...+|+-|.||| ++.+.++
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-------~S~~t~-----~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-------KSKSTF-----RSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-------cccccc-----cccchhhhceeeccCCCceEEE
Confidence 36777788889998884 89999999999999999752 112122 12466899999998 4889999
Q ss_pred ecCCCcEEEEECCCCc-eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 514 GYADGHVTVWDVQRAS-AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~-~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
++.+|.+.+||+..+. +.+.+. +|+++|.++-|.|+ |..++.+| -++
T Consensus 195 ~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPn-----r~~lATGG-RDK 242 (839)
T KOG0269|consen 195 IHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPN-----REWLATGG-RDK 242 (839)
T ss_pred ecCCceEEEeeccCchhHHHHhh-cccCceEEEeecCC-----CceeeecC-CCc
Confidence 9999999999998875 555565 99999999999995 67777777 443
No 117
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=5.7e-05 Score=100.02 Aligned_cols=108 Identities=19% Similarity=0.290 Sum_probs=74.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
..||-|+.||.|.+||-.... .+.. .. .+. +...|+|+|..|.||+.+. +||+|..||.|.|||+++.+.-.+
T Consensus 81 GlIaGG~edG~I~ly~p~~~~---~~~~-~~-~la-~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~ 154 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASII---ANAS-EE-VLA-TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT 154 (1049)
T ss_pred ceeeccccCCceEEecchhhc---cCcc-hH-HHh-hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC
Confidence 369999999999999974210 0111 11 111 3467999999999999977 999999999999999999776544
Q ss_pred ec-cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 534 IT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 534 l~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.. ..-..-|.+++|.... .|.++.++ ..|.+.++.
T Consensus 155 ~~~~~~~~eI~~lsWNrkv----qhILAS~s-~sg~~~iWD 190 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKV----SHILASGS-PSGRAVIWD 190 (1049)
T ss_pred CCCCCCcccceEeccchhh----hHHhhccC-CCCCceecc
Confidence 42 1235789999999752 34444444 444444433
No 118
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.10 E-value=9.5e-05 Score=84.49 Aligned_cols=198 Identities=18% Similarity=0.156 Sum_probs=127.6
Q ss_pred HHhhhccccccCCCcEEEEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC
Q 000170 433 QTIASQAFRRDHGSPQVLAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD 509 (1950)
Q Consensus 433 ~~i~s~~f~~~~G~pt~ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~ 509 (1950)
+...+-..+...+++-.+.-+ ++.+|+.+.+.+|++||.+.+ |++.. ....+.=--+++||||+
T Consensus 53 r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~---------k~~~~----i~~~~eni~i~wsp~g~ 119 (313)
T KOG1407|consen 53 RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG---------KCTAR----IETKGENINITWSPDGE 119 (313)
T ss_pred hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC---------cEEEE----eeccCcceEEEEcCCCC
Confidence 444455566667777544444 478999999999999999752 33321 11233334578999999
Q ss_pred EEEEecCCCcEEEEECCCCcee-----------------------------------------eeeccCcCCCeEEEEEe
Q 000170 510 LLLAGYADGHVTVWDVQRASAA-----------------------------------------KVITGEHTSPVVHTLFL 548 (1950)
Q Consensus 510 ~LasG~~dG~I~lWDl~~g~~l-----------------------------------------~tl~~~H~~~I~~v~F~ 548 (1950)
++|+|..|..|.+.|..+.+.. .++. +|++.-.+|.|.
T Consensus 120 ~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~ 198 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFD 198 (313)
T ss_pred EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEEEC
Confidence 9999999999999999876542 2333 788888889999
Q ss_pred cCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecccccccCCCCCCCCCCCCcccccc
Q 000170 549 GQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLLFDESCGGAPLSSQGNSTASASS 628 (1950)
Q Consensus 549 ~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp~~~~~gs~~~~~~gn~~~~t~~ 628 (1950)
|+ +|+.++-++|.. +.||+.-..-|.+.+.+ +.-+|-.++--
T Consensus 199 p~----GryfA~GsADAl----------vSLWD~~ELiC~R~isR-ldwpVRTlSFS----------------------- 240 (313)
T KOG1407|consen 199 PD----GRYFATGSADAL----------VSLWDVDELICERCISR-LDWPVRTLSFS----------------------- 240 (313)
T ss_pred CC----CceEeeccccce----------eeccChhHhhhheeecc-ccCceEEEEec-----------------------
Confidence 98 366666666764 56787644446565655 33333222210
Q ss_pred cccccccccccCCcccccccCCCcccccEEEEEeccEEEEEEeccCceeeeeccCCCCCCCCCCCccccceeecccCCCC
Q 000170 629 IGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTYQTALVVRLTPTLEVYAQIPRPDGVREGAMPYTAWKCMTTCRSSTT 708 (1950)
Q Consensus 629 ~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~T~~~~~IV~l~P~~~v~~k~~rP~~v~~~slp~laW~~~~~~~~~~~ 708 (1950)
.+..++|.++..+++=++-.++-..+++++-. +.+-..+|.+.
T Consensus 241 ------------------------~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-----~~t~tVAWHPk-------- 283 (313)
T KOG1407|consen 241 ------------------------HDGRMLASASEDHFIDIAEVETGDRVWEIPCE-----GPTFTVAWHPK-------- 283 (313)
T ss_pred ------------------------cCcceeeccCccceEEeEecccCCeEEEeecc-----CCceeEEecCC--------
Confidence 01135666777776666666665555565332 33446699884
Q ss_pred CCCcccccccceeEEEEEcCe
Q 000170 709 ESIPTEAAERVSLLAIAWDRK 729 (1950)
Q Consensus 709 ~~~~~~~~~~~~~LA~aWgn~ 729 (1950)
.++|||+-+..
T Consensus 284 ----------~~LLAyA~ddk 294 (313)
T KOG1407|consen 284 ----------RPLLAYACDDK 294 (313)
T ss_pred ----------CceeeEEecCC
Confidence 26899987754
No 119
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.10 E-value=2.3e-05 Score=92.74 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=93.5
Q ss_pred cCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
.--+++|+.++ +.|||+|.-+|.|+||....+ . ..+ ......+-+.-|.|.|-+..|++|+.||.|
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg---------~-~~~--~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG---------G-EQW--KLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEEEcccC---------c-eEE--EeecccCceEEEEecccccEEEeecCCCcE
Confidence 44468999887 589999999999999997432 1 111 122346779999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecC
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLD 592 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~ 592 (1950)
-+|.+.++...+++. ||+.++++=.|+|++ -.+++++++|. +++|+-.++.-.+.+.
T Consensus 173 Wmw~ip~~~~~kv~~-Gh~~~ct~G~f~pdG------Kr~~tgy~dgt--------i~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMS-GHNSPCTCGEFIPDG------KRILTGYDDGT--------IIVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEECCCcceeeEec-CCCCCcccccccCCC------ceEEEEecCce--------EEEEecCCCceeEEec
Confidence 999999988788887 899999999999984 24666666664 4556555554333333
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.09 E-value=0.0001 Score=93.18 Aligned_cols=135 Identities=18% Similarity=0.233 Sum_probs=99.8
Q ss_pred ccccccCCCcEE-EEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE
Q 000170 438 QAFRRDHGSPQV-LAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 438 ~~f~~~~G~pt~-ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las 513 (1950)
..|....|-+.+ +..- +-.|++|..|++|.+|...+. .. + .+..+|.+.|.|++...+++ |++
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~-------~P--~---~~LkgH~snVC~ls~~~~~~-~iS 117 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA-------EP--L---YTLKGHKSNVCSLSIGEDGT-LIS 117 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCC-------Cc--h---hhhhccccceeeeecCCcCc-eEe
Confidence 445445555433 3332 234999999999999986321 11 1 14567999999999999999 999
Q ss_pred ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 514 GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
|+-|.++++|-. +++..++. ||+.+|+.|++.+. .-.+.-|+|. + +|+|. ..++.++|.|
T Consensus 118 gSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e-----~~~vTgsaDK---------t-IklWk--~~~~l~tf~g 177 (745)
T KOG0301|consen 118 GSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPE-----NTYVTGSADK---------T-IKLWK--GGTLLKTFSG 177 (745)
T ss_pred cccccceEEecc--hhhhcccC-CcchheeeeeecCC-----CcEEeccCcc---------e-eeecc--CCchhhhhcc
Confidence 999999999976 56666665 99999999999986 2233333344 2 78996 4778899999
Q ss_pred CccccEEEeeccc
Q 000170 594 QKTGIVLSASPLL 606 (1950)
Q Consensus 594 ~~~g~Vla~spLp 606 (1950)
|+..|..++.|+
T Consensus 178 -HtD~VRgL~vl~ 189 (745)
T KOG0301|consen 178 -HTDCVRGLAVLD 189 (745)
T ss_pred -chhheeeeEEec
Confidence 999998888877
No 121
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.07 E-value=7e-06 Score=100.55 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=74.7
Q ss_pred CCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.|.+.-++++ ++|+|+-+.||.++|||+ +.+.+.. ....--|...|+||||||+|+|+|++|-.|.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~f-------dt~eLlg-----~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDF-------DTQELLG-----VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeec-------cHHHHHH-----HHHhhccceEEEEEcCCccEEEecCCcceEE
Confidence 4456555555 589999999999999998 2233211 2233467899999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEec
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
+|.+.-++++..=. ||.+.|..|+|.+
T Consensus 358 VwSf~erRVVARGq-GHkSWVs~VaFDp 384 (636)
T KOG2394|consen 358 VWSFEERRVVARGQ-GHKSWVSVVAFDP 384 (636)
T ss_pred EEEeccceEEEecc-ccccceeeEeecc
Confidence 99999988876554 9999999999985
No 122
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=7.3e-06 Score=101.24 Aligned_cols=132 Identities=16% Similarity=0.266 Sum_probs=91.9
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
.++-.++.+++++ ..|+.++.+|++.+|++.....+ +....+.+. +..+|.|||-|+++++.|.++.+|+.||+
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s-~~~~~epi~---tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS-AEKDVEPIL---TFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc-cccceeeeE---EEecccCceEEEEecCCceEEEeeccCce
Confidence 3444556666665 57999999999999998321111 111222221 45679999999999999999999999999
Q ss_pred EEEEECCCC---------cee-eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEe
Q 000170 520 VTVWDVQRA---------SAA-KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQC 589 (1950)
Q Consensus 520 I~lWDl~~g---------~~l-~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ 589 (1950)
|+.|++.-. ..+ .++. ||+.+||.++++.. + ..+++++.+|. +|+|. ++....|
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~-----~-~~Llscs~DgT--------vr~w~-~~~~~~~ 431 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSST-----K-DRLLSCSSDGT--------VRLWE-PTEESPC 431 (577)
T ss_pred eeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccc-----c-cceeeecCCce--------EEeec-cCCcCcc
Confidence 999977521 122 2343 99999999999963 3 34666666663 55665 3455557
Q ss_pred ecCC
Q 000170 590 LLDG 593 (1950)
Q Consensus 590 ll~g 593 (1950)
+|+.
T Consensus 432 ~f~~ 435 (577)
T KOG0642|consen 432 TFGE 435 (577)
T ss_pred ccCC
Confidence 7776
No 123
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.06 E-value=2e-05 Score=93.60 Aligned_cols=122 Identities=19% Similarity=0.231 Sum_probs=91.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc---ee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS---AA 531 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~---~l 531 (1950)
..+.+++-|.+|++||+..+ .... . -....+.+|+++++....||+|+.|.+|+|||-.+|. +.
T Consensus 272 ~v~yS~SwDHTIk~WDletg---------~~~~---~-~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETG---------GLKS---T-LTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS 338 (423)
T ss_pred CceEeecccceEEEEEeecc---------ccee---e-eecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence 56888999999999998542 1111 0 0124679999999999999999999999999999874 34
Q ss_pred eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee-EEeecCCCccccEEEeec
Q 000170 532 KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK-TQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 532 ~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~-s~~ll~g~~~g~Vla~sp 604 (1950)
+++. ||++.|..|.|+|- ....++|+.-+| .+++|++++.. ..-.+.| |.-.|+++.-
T Consensus 339 ~s~~-gH~nwVssvkwsp~-----~~~~~~S~S~D~--------t~klWDvRS~k~plydI~~-h~DKvl~vdW 397 (423)
T KOG0313|consen 339 QSLI-GHKNWVSSVKWSPT-----NEFQLVSGSYDN--------TVKLWDVRSTKAPLYDIAG-HNDKVLSVDW 397 (423)
T ss_pred Eeee-cchhhhhheecCCC-----CceEEEEEecCC--------eEEEEEeccCCCcceeecc-CCceEEEEec
Confidence 5665 99999999999985 345555554442 37889877666 4556677 8778877655
No 124
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.05 E-value=3.3e-05 Score=90.30 Aligned_cols=105 Identities=14% Similarity=0.276 Sum_probs=80.3
Q ss_pred cEEEEEcC--CEEEE-EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc-EEE
Q 000170 447 PQVLAVHP--SFIAV-GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH-VTV 522 (1950)
Q Consensus 447 pt~ia~s~--~~IAv-Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~-I~l 522 (1950)
..|+.++. .+||- |...|.|.|-|+... ....-.++ ..|.+.|.||+++.||+.||+++..|+ |||
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~-----~~~~p~~I-----~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRI 208 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLAST-----KPNAPSII-----NAHDSDIACVALNLQGTLVATASTKGTLIRI 208 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhc-----CcCCceEE-----EcccCceeEEEEcCCccEEEEeccCcEEEEE
Confidence 45555543 45655 788899999998531 11000111 459999999999999999999999999 899
Q ss_pred EECCCCceeeeeccCc-CCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 523 WDVQRASAAKVITGEH-TSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H-~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
||..+|+.++-+..|- ...|.+++|+++ ...+++++|.+
T Consensus 209 Fdt~~g~~l~E~RRG~d~A~iy~iaFSp~-----~s~LavsSdKg 248 (346)
T KOG2111|consen 209 FDTEDGTLLQELRRGVDRADIYCIAFSPN-----SSWLAVSSDKG 248 (346)
T ss_pred EEcCCCcEeeeeecCCchheEEEEEeCCC-----ccEEEEEcCCC
Confidence 9999999988886554 478999999997 56788888775
No 125
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00049 Score=80.87 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=78.7
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
..+.|++|.|+++|.+|++.++|-+|+|||..+|+.++++. -+.-.|-.++|+.. . ..++.+-.. +..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~-----~-~~~i~sStk-----~d~ 80 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHH-----S-NTVIHSSTK-----EDD 80 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecC-----C-ceEEEccCC-----CCC
Confidence 47899999999999999999999999999999999999996 66689999999974 2 334443332 233
Q ss_pred cccccccceeeeEEeecCCCccccEEEeecccc
Q 000170 575 SVVPLLNRFSIKTQCLLDGQKTGIVLSASPLLF 607 (1950)
Q Consensus 575 t~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp~ 607 (1950)
+ +|.+..++-+..+-|.| |.-.|.+++.-|.
T Consensus 81 t-IryLsl~dNkylRYF~G-H~~~V~sL~~sP~ 111 (311)
T KOG1446|consen 81 T-IRYLSLHDNKYLRYFPG-HKKRVNSLSVSPK 111 (311)
T ss_pred c-eEEEEeecCceEEEcCC-CCceEEEEEecCC
Confidence 3 66777777778899999 9999976666553
No 126
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.04 E-value=3e-05 Score=87.68 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=43.6
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccc
Q 000170 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVP 578 (1950)
Q Consensus 499 VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~r 578 (1950)
|++-+++|+...+++|.+|+.++-||..+|..+.....+|-++|.+|.|+|| +-..++++.++ | +|
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPd-----GE~yAsGSEDG--------T-ir 292 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPD-----GELYASGSEDG--------T-IR 292 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCC-----CceeeccCCCc--------e-EE
Confidence 4444444444455555555555555555555444443489999999999998 45677776664 3 67
Q ss_pred cccc
Q 000170 579 LLNR 582 (1950)
Q Consensus 579 l~~~ 582 (1950)
||..
T Consensus 293 lWQt 296 (334)
T KOG0278|consen 293 LWQT 296 (334)
T ss_pred EEEe
Confidence 7764
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=4.5e-05 Score=84.80 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred cccCCCcEEEEE-cCCEEEEEeCCCcEEEEeCCCCCCccCcccceee-eecccCC---CCCCCeEEEEEcCCCCEEEEec
Q 000170 441 RRDHGSPQVLAV-HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMM-MLGLLGD---RSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 441 ~~~~G~pt~ia~-s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~-~l~~~~~---~h~~~VtsLafS~DG~~LasG~ 515 (1950)
-...|.+.++.. ++-.+|+|+.|.+|+.||++.+. ++ .+..... -..++|+++|..|.|..||+|+
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~---------~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS---------CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc---------eeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 345677766654 45789999999999999997531 11 1221111 1357899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
+|....+||+..|..++.+. .|+..|.+|.|+|. .+.++.++-
T Consensus 251 ~dssc~lydirg~r~iq~f~-phsadir~vrfsp~-----a~yllt~sy 293 (350)
T KOG0641|consen 251 ADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPG-----AHYLLTCSY 293 (350)
T ss_pred CCCceEEEEeeCCceeeeeC-CCccceeEEEeCCC-----ceEEEEecc
Confidence 99999999999999999887 89999999999985 455555553
No 128
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=1.2e-05 Score=98.27 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=69.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 492 GDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 492 ~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
+.+|+|-|.||+|+.||.+||+|+.|-.|.|||.-..|.++.+..||+.-|.+++|.|- +.+-+++++-.+-.|.+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~----tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY----TNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc----CCCeEEEeccCcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999986 45566676666656666
Q ss_pred Eccc
Q 000170 572 HSLS 575 (1950)
Q Consensus 572 h~ft 575 (1950)
|..+
T Consensus 122 fdl~ 125 (758)
T KOG1310|consen 122 FDLD 125 (758)
T ss_pred Eecc
Confidence 6654
No 129
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.99 E-value=3.8e-05 Score=96.14 Aligned_cols=119 Identities=17% Similarity=0.263 Sum_probs=88.0
Q ss_pred cccCCCcEEEEE-c--CCEEEEEeCCCcEEEEeCCCCCCcc-CcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 441 RRDHGSPQVLAV-H--PSFIAVGMSKGAIVVVPGKYSAHHR-DSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 441 ~~~~G~pt~ia~-s--~~~IAvGts~G~I~vfd~k~~~~~~-d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
|.+.-.++|+|+ . ...+|+|+=|+.|.+||+..++.+. ...+..+.+ ..+.++..+|-++|-++.|+.+++|+.
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~--sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN--SLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc--cCCCCCccceeeeecCCcceEEEecCc
Confidence 344555789988 2 3679999999999999996542100 000001111 112367889999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
.+.|++||-.+++.+..+. ||+.-|..+.-..|| +.++|+.++|.
T Consensus 192 ek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDG------t~~ls~sSDgt 236 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDG------TRLLSASSDGT 236 (735)
T ss_pred ccceEEeccccccceeeee-ccccceEEEEEcCCC------CeEeecCCCce
Confidence 9999999999999998887 999999999998763 45666666653
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=1.2e-05 Score=101.51 Aligned_cols=113 Identities=16% Similarity=0.239 Sum_probs=88.1
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.++.+++++ .|.|.|+.++.+.+||.|.. . |.. .-.+|...|.++.|+|||.|+++|.+|.+|+||
T Consensus 114 ~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~-------G--c~~---~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~ 181 (825)
T KOG0267|consen 114 NITSVDFHPYGEFFASGSTDTDLKIWDIRKK-------G--CSH---TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIW 181 (825)
T ss_pred CcceeeeccceEEeccccccccceehhhhcc-------C--cee---eecCCcceeEEEeecCCCceeeccCCcceeeee
Confidence 456677776 78899999999999998631 1 222 223488899999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI 585 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~ 585 (1950)
|+..|+..+.+. .|...|.++-|.+. ..++.++-.++ + +++|+..+.
T Consensus 182 d~~agk~~~ef~-~~e~~v~sle~hp~------e~Lla~Gs~d~-------t-v~f~dletf 228 (825)
T KOG0267|consen 182 DLTAGKLSKEFK-SHEGKVQSLEFHPL------EVLLAPGSSDR-------T-VRFWDLETF 228 (825)
T ss_pred cccccccccccc-cccccccccccCch------hhhhccCCCCc-------e-eeeecccee
Confidence 999999999997 99999999999975 34444444443 2 566764433
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.00013 Score=92.20 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=104.1
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...++|+|.+. +-+|+|=.+|.|-+|+...+.++ +... .+ ...++|.+|||+ +|..|-+.+.+|.|.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~------~~vi---~g-~~drsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL------EPVI---HG-PEDRSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCcee------eEEE---ec-CCCCceeeEEEc-cCCeEEeecCCceEE
Confidence 34578999985 67999999999999998654321 1112 22 356789999999 777889999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEE
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLS 601 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla 601 (1950)
-||+.+++..+.+. .-.++||+++-.+. ...++|++|++ .++....+ -++ .+..+.|.. ..|.||+
T Consensus 94 EwDl~~lk~~~~~d-~~gg~IWsiai~p~-----~~~l~IgcddG-vl~~~s~~----p~~--I~~~r~l~r-q~sRvLs 159 (691)
T KOG2048|consen 94 EWDLHTLKQKYNID-SNGGAIWSIAINPE-----NTILAIGCDDG-VLYDFSIG----PDK--ITYKRSLMR-QKSRVLS 159 (691)
T ss_pred EEecccCceeEEec-CCCcceeEEEeCCc-----cceEEeecCCc-eEEEEecC----Cce--EEEEeeccc-ccceEEE
Confidence 99999999988885 77899999999975 46788888886 66666654 122 233566766 6788887
Q ss_pred eeccc
Q 000170 602 ASPLL 606 (1950)
Q Consensus 602 ~spLp 606 (1950)
++.-|
T Consensus 160 lsw~~ 164 (691)
T KOG2048|consen 160 LSWNP 164 (691)
T ss_pred EEecC
Confidence 77755
No 132
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.95 E-value=1.4e-05 Score=95.25 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce---eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA---AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~---l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
..|+..|+-+.||++|+|||+|+.|.+..+|++..-.. .+|+. +|..+|..|.|+||+ |..++.+.|+.
T Consensus 221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDd----ryLlaCg~~e~--- 292 (519)
T KOG0293|consen 221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDD----RYLLACGFDEV--- 292 (519)
T ss_pred hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCC----CeEEecCchHh---
Confidence 56899999999999999999999999999999976544 67776 999999999999994 55555555664
Q ss_pred EEEcccccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 570 QLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 570 ~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
.++|++.++++..++...+...+.+++-.|
T Consensus 293 -------~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 293 -------LSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred -------eeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 578999999888777653334453444443
No 133
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.94 E-value=1.4e-05 Score=96.76 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=81.6
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
+|+...|...++..+| ..|-+|.++|+|-+|.-..- . .-.+ + -.|.|+|++||+.++|.|+|+.+.
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk----e-PLvK--i-----LcH~g~V~siAv~~~G~YMaTtG~ 313 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK----E-PLVK--I-----LCHRGPVSSIAVDRGGRYMATTGL 313 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc----c-hHHH--H-----HhcCCCcceEEECCCCcEEeeccc
Confidence 4677889999998887 67999999999999975320 0 0111 1 238999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
|..|+|||+.+-..++++.. ..+...+.|+- +..++++--+
T Consensus 314 Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sq------kglLA~~~G~ 354 (545)
T KOG1272|consen 314 DRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQ------KGLLALSYGD 354 (545)
T ss_pred ccceeEeeeccccccceeec--CCCcccccccc------ccceeeecCC
Confidence 99999999998887776643 35777888883 4455555433
No 134
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.94 E-value=0.00059 Score=82.22 Aligned_cols=155 Identities=15% Similarity=0.245 Sum_probs=112.3
Q ss_pred ccccccccccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCC-CCCCccCc--
Q 000170 406 QPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGK-YSAHHRDS-- 480 (1950)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k-~~~~~~d~-- 480 (1950)
.-+|+-++-|+.+--+-..|+-+..+ .++.++++|+-.++ ..+|+|..+|.|.+|--. ..++-++.
T Consensus 36 ~~iriW~v~r~~~~~~~~~V~y~s~L---------s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~ 106 (434)
T KOG1009|consen 36 KDIRIWKVNRSEPGGGDMKVEYLSSL---------SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEA 106 (434)
T ss_pred cceeeeeeeecCCCCCceeEEEeecc---------cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchh
Confidence 45677777776666655555444433 34678889999987 599999999999999643 00100000
Q ss_pred -ccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceE
Q 000170 481 -MDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFK 559 (1950)
Q Consensus 481 -~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~ 559 (1950)
.....+...-...+|...|--++|++|+.++++|+.|..+++||+.+|..+..+ ++|..-|..++|-+- +.+..
T Consensus 107 ~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~-~dh~~yvqgvawDpl----~qyv~ 181 (434)
T KOG1009|consen 107 DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL-DDHEHYVQGVAWDPL----NQYVA 181 (434)
T ss_pred hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec-cccccccceeecchh----hhhhh
Confidence 000001111123458889999999999999999999999999999999998777 599999999999986 46677
Q ss_pred EEEecCCceEEEEcc
Q 000170 560 AVTGDTKGLVQLHSL 574 (1950)
Q Consensus 560 ~vssD~~G~V~~h~f 574 (1950)
..++|-.+.++..+.
T Consensus 182 s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 182 SKSSDRHPEGFSAKL 196 (434)
T ss_pred hhccCcccceeeeee
Confidence 888888787777764
No 135
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.93 E-value=0.00029 Score=82.29 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=105.8
Q ss_pred HHHhhhccccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCcc----------Ccc-------cce--------
Q 000170 432 TQTIASQAFRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHR----------DSM-------DSK-------- 484 (1950)
Q Consensus 432 S~~i~s~~f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~----------d~~-------~~k-------- 484 (1950)
..-++-.+.+..-+.+||++++ |+++|+.+.||.|++|+.+-+..++ |.. +.+
T Consensus 74 ~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 74 VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence 3344555677888889999887 4899999999999999975332000 000 000
Q ss_pred --eeee-c----ccC---------------CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCe
Q 000170 485 --MMML-G----LLG---------------DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPV 542 (1950)
Q Consensus 485 --~~~l-~----~~~---------------~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I 542 (1950)
.++. + ..+ ..|.-+|-.+-.-..+.++++++.|.+|.|||++ |+.+.++. .-...-
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n 231 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSN 231 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccc
Confidence 0000 0 000 1245566777777889999999999999999999 99988874 444556
Q ss_pred EEEEEecCCCccCCceEEEEe-cCCceEEEEcccccccccceeeeEEeecCCCccccEEEeec
Q 000170 543 VHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 543 ~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
.+.+.+|+ +.++++++ --+-.||..-|++-+-+. .+.--.-|.| |.+-|++++-
T Consensus 232 ~~aavSP~-----GRFia~~gFTpDVkVwE~~f~kdG~fq--ev~rvf~LkG-H~saV~~~aF 286 (420)
T KOG2096|consen 232 YDAAVSPD-----GRFIAVSGFTPDVKVWEPIFTKDGTFQ--EVKRVFSLKG-HQSAVLAAAF 286 (420)
T ss_pred cceeeCCC-----CcEEEEecCCCCceEEEEEeccCcchh--hhhhhheecc-chhheeeeee
Confidence 67778887 56677766 334458888877543222 1111234678 8888866555
No 136
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.92 E-value=5.8e-05 Score=97.72 Aligned_cols=106 Identities=24% Similarity=0.409 Sum_probs=80.1
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.||.+.++ .|+|+|.++|.|++|.--+. ..+..+..++-| |..+|++++||+||.+|.+|+.-|...+|-
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~--~~~~~t~t~lHW------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGS--SDDSETCTLLHW------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccc--ccccccceEEEe------cccccceeEEecCCceEeecccceEEEEEe
Confidence 57777775 89999999999999953110 012222222222 788999999999999999999999999999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+.+++ +.+-..-+++|.++.+++|+ ....++.+|.+
T Consensus 280 ~~T~~--kqfLPRLgs~I~~i~vS~ds----~~~sl~~~DNq 315 (792)
T KOG1963|consen 280 LETGK--KQFLPRLGSPILHIVVSPDS----DLYSLVLEDNQ 315 (792)
T ss_pred ecCCC--cccccccCCeeEEEEEcCCC----CeEEEEecCce
Confidence 99998 33333668999999999983 45567777776
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.90 E-value=0.00011 Score=84.81 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=87.7
Q ss_pred cccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCc-ccce--eeeecccCCCCCCCeEEEEE----------
Q 000170 441 RRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDS-MDSK--MMMLGLLGDRSPAPVTAMCF---------- 504 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~-~~~k--~~~l~~~~~~h~~~VtsLaf---------- 504 (1950)
+.+-|++.++.+.+ .|+.+|.+||.|.|||++-..+.++. -..+ |++-..-.++|.-+|+++-|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 34668899988874 89999999999999999532111110 1111 21111001223333433333
Q ss_pred --------------------------------cCC---CCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEec
Q 000170 505 --------------------------------NQP---GDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 505 --------------------------------S~D---G~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
||- +..+|+|+.+-.|+|-|+++|.+-++++ ||...|..|.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEecc
Confidence 332 4466666666667777777777777887 9999999999998
Q ss_pred CCCccCCceEEEEecCCceEEEEcccccccccceee-eEEeecCCCccc
Q 000170 550 QDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI-KTQCLLDGQKTG 597 (1950)
Q Consensus 550 d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~-~s~~ll~g~~~g 597 (1950)
. ...++.++..+| .+|+|+.+.. -|-..|+- |++
T Consensus 199 ~-----~e~vLatgsaDg--------~irlWDiRrasgcf~~lD~-hn~ 233 (397)
T KOG4283|consen 199 S-----SEWVLATGSADG--------AIRLWDIRRASGCFRVLDQ-HNT 233 (397)
T ss_pred C-----ceeEEEecCCCc--------eEEEEEeecccceeEEeec-ccC
Confidence 5 456777777775 3567765443 35566665 543
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=2.1e-05 Score=103.90 Aligned_cols=146 Identities=16% Similarity=0.266 Sum_probs=103.5
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEe
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG 514 (1950)
.+..+.|.|..+.+++ +.+|+|.++|.|.|||++. + .. .... ......+.|++|+||.. ...||+|
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn-~-----~t--P~~~--~~~~~~~eI~~lsWNrkvqhILAS~ 180 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNK-P-----ET--PFTP--GSQAPPSEIKCLSWNRKVSHILASG 180 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCC-c-----CC--CCCC--CCCCCcccceEeccchhhhHHhhcc
Confidence 4567899999999985 6999999999999999952 1 11 1111 12235678999999865 6689999
Q ss_pred cCCCcEEEEECCCCceeeeeccCcC--CCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccc-eeeeEEeec
Q 000170 515 YADGHVTVWDVQRASAAKVITGEHT--SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNR-FSIKTQCLL 591 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~~H~--~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~-~t~~s~~ll 591 (1950)
+.+|.+.|||+++.+.+-.++ .|. ..+..|.|.|++. . .+++++|+++. ..+.+|+. |.-...++|
T Consensus 181 s~sg~~~iWDlr~~~pii~ls-~~~~~~~~S~l~WhP~~a---T-ql~~As~dd~~------PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKKPIIKLS-DTPGRMHCSVLAWHPDHA---T-QLLVASGDDSA------PVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred CCCCCceeccccCCCcccccc-cCCCccceeeeeeCCCCc---e-eeeeecCCCCC------ceeEeecccccCCchhhh
Confidence 999999999999987766665 343 4578899999853 2 34555555532 23456763 333356788
Q ss_pred CCCccccEEEeeccc
Q 000170 592 DGQKTGIVLSASPLL 606 (1950)
Q Consensus 592 ~g~~~g~Vla~spLp 606 (1950)
.| |.--|++++.=+
T Consensus 250 ~~-H~~GilslsWc~ 263 (1049)
T KOG0307|consen 250 EG-HQRGILSLSWCP 263 (1049)
T ss_pred cc-cccceeeeccCC
Confidence 77 777787777755
No 139
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.00018 Score=87.02 Aligned_cols=96 Identities=25% Similarity=0.257 Sum_probs=72.4
Q ss_pred cCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
++|.=.++|++ +..+|+|..||+++||++-. + .+ .+ ....|.+.|..|+|||||+.||+=+.| .-
T Consensus 143 ~~g~~k~vaf~~~gs~latgg~dg~lRv~~~Ps-------~--~t-~l--~e~~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 143 DFGQQKVVAFNGDGSKLATGGTDGTLRVWEWPS-------M--LT-IL--EEIAHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred hcCcceEEEEcCCCCEeeeccccceEEEEecCc-------c--hh-hh--hhHhhcCccccceeCCCCcEEEEecCC-ce
Confidence 34443566665 47999999999999999721 1 11 11 234588999999999999999999999 89
Q ss_pred EEEECCCCceeeeecc-CcCCCeEEEEEecCC
Q 000170 521 TVWDVQRASAAKVITG-EHTSPVVHTLFLGQD 551 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~ 551 (1950)
++||+++|.++...++ .-.-..-.+.|..|+
T Consensus 210 ~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 210 RVWSVNTGAALARKTPFSKDEMFSSCRFSVDN 241 (398)
T ss_pred EEEEeccCchhhhcCCcccchhhhhceecccC
Confidence 9999999987766653 223466777898774
No 140
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.85 E-value=0.00024 Score=83.28 Aligned_cols=107 Identities=12% Similarity=0.243 Sum_probs=76.3
Q ss_pred CccccccccccCcceeeeEEecCChhHHHHhhhccc-cccCCCcEEEEEc--CCEEEEEeCCCc-EEEEeCCCCCCccCc
Q 000170 405 AQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAF-RRDHGSPQVLAVH--PSFIAVGMSKGA-IVVVPGKYSAHHRDS 480 (1950)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f-~~~~G~pt~ia~s--~~~IAvGts~G~-I~vfd~k~~~~~~d~ 480 (1950)
++-..-+|.+.|+--+--+-++..+ .+.+ ..+-..+.|++.+ |..||+++.+|+ |+|||-..+
T Consensus 148 k~~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g------ 214 (346)
T KOG2111|consen 148 KSLLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG------ 214 (346)
T ss_pred ceEEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC------
Confidence 4677788888776555544444333 3333 3355668999998 589999999998 789997432
Q ss_pred ccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 481 MDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 481 ~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
..++.---| ...+.|-||+||||++|||+.+..|++.|+.+...
T Consensus 215 ---~~l~E~RRG-~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 215 ---TLLQELRRG-VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ---cEeeeeecC-CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 112210012 24577999999999999999999999999998753
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.84 E-value=0.012 Score=69.63 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCcEEEEEcC--CEE-EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE-ecCCCcE
Q 000170 445 GSPQVLAVHP--SFI-AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA-GYADGHV 520 (1950)
Q Consensus 445 G~pt~ia~s~--~~I-AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las-G~~dG~I 520 (1950)
+.|.++++++ .++ ++++.++.|.+||.+.+ +... ....+ ..+..++|+|||+.+++ +..+|.|
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~---~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG---------EVIG---TLPSG-PDPELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCC---------cEEE---eccCC-CCccEEEECCCCCEEEEEcCCCCeE
Confidence 3466677664 555 66788999999998531 1111 11112 33578899999998765 4668999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
++||+.+++++..+. +...+.+++|+++ ++.+++++++...+
T Consensus 98 ~~~d~~~~~~~~~~~--~~~~~~~~~~~~d-----g~~l~~~~~~~~~~ 139 (300)
T TIGR03866 98 TVIDIETRKVLAEIP--VGVEPEGMAVSPD-----GKIVVNTSETTNMA 139 (300)
T ss_pred EEEECCCCeEEeEee--CCCCcceEEECCC-----CCEEEEEecCCCeE
Confidence 999999988877774 2335688999987 45666666554333
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.83 E-value=3.7e-05 Score=90.04 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=75.3
Q ss_pred eeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCC
Q 000170 419 TLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRS 495 (1950)
Q Consensus 419 ~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h 495 (1950)
..|+..+ ++.++.++... .+..=+++..|..++ ++|.+|+.|..|++||++. ..|++.-....+|
T Consensus 113 ~~GvIrV--id~~~~~~~~~-~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 113 YLGVIRV--IDVVSGQCSKN-YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------DVCVAVFGGVEGH 180 (385)
T ss_pred ceeEEEE--Eecchhhhccc-eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------CeEEEEecccccc
Confidence 4455544 45567776543 445555678888876 6999999999999999943 2444321234679
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS 529 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~ 529 (1950)
++.|-+++||.||.++|+|+.|-+|++|++.+.+
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 9999999999999999999999999999999654
No 143
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.83 E-value=8.3e-05 Score=85.75 Aligned_cols=141 Identities=18% Similarity=0.199 Sum_probs=98.9
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEecCC
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGYAD 517 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~~d 517 (1950)
...|.+.|+...| ..+|.= .+..|.+|++..+.. ....++......++...|+=+||| ||+.+|+.+ |
T Consensus 121 eavg~i~cvew~Pns~klasm-~dn~i~l~~l~ess~------~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d 192 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASM-DDNNIVLWSLDESSK------IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D 192 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEe-ccCceEEEEcccCcc------hheeecccccccccceecccccCCCCccceEEEeC-C
Confidence 3577888887776 445544 388999999854321 001122211233677889999998 899888876 7
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee-EEeecCCCcc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK-TQCLLDGQKT 596 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~-s~~ll~g~~~ 596 (1950)
+++..||+.+.++...|.++|...|..+.|.|+ ++..+++++++|. +|+|+.+..+ --.-|.| |.
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn-----kq~~lvt~gDdgy--------vriWD~R~tk~pv~el~~-Hs 258 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN-----KQHILVTCGDDGY--------VRIWDTRKTKFPVQELPG-HS 258 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCC-----ceEEEEEcCCCcc--------EEEEeccCCCccccccCC-Cc
Confidence 999999999999999999999999999999996 7777777777764 4555533222 2345667 88
Q ss_pred ccE--EEeec
Q 000170 597 GIV--LSASP 604 (1950)
Q Consensus 597 g~V--la~sp 604 (1950)
.+| +.|.|
T Consensus 259 HWvW~VRfn~ 268 (370)
T KOG1007|consen 259 HWVWAVRFNP 268 (370)
T ss_pred eEEEEEEecC
Confidence 888 44544
No 144
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=7e-05 Score=85.23 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=74.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
+.+++..-||.+++||... ..+.+. ....|...|-++.+++ ++..+++++-||+|+|||..++.-++|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~--------~s~Pi~---~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTM--------PSKPIH---KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred ceEEEEecCceEEEeccCC--------CCcchh---HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe
Confidence 5577788899999999631 112121 2245888999999986 678899999999999999999999999
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+. ||+.-|..++|+|.. ..++.++..+|
T Consensus 143 f~-gh~~~Iy~a~~sp~~-----~nlfas~Sgd~ 170 (311)
T KOG0277|consen 143 FN-GHNSCIYQAAFSPHI-----PNLFASASGDG 170 (311)
T ss_pred ec-CCccEEEEEecCCCC-----CCeEEEccCCc
Confidence 97 899999999999863 34555544444
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.82 E-value=4.7e-05 Score=89.12 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=78.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCC-CEEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPG-DLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG-~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
-++|+|+..|.|+|.|.-.+ + +- .-.-+|.++|..|.|-|+- ++|++|+.|..|+|||+++..|+-.
T Consensus 106 p~la~~G~~GvIrVid~~~~---------~--~~-~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V 173 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSG---------Q--CS-KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV 173 (385)
T ss_pred eeEEeecceeEEEEEecchh---------h--hc-cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE
Confidence 58999999999999998431 1 11 1224588999999999985 7999999999999999999999988
Q ss_pred ecc--CcCCCeEEEEEecCCCccCCceEEEEe-cCCceEEEEc
Q 000170 534 ITG--EHTSPVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHS 573 (1950)
Q Consensus 534 l~~--~H~~~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ 573 (1950)
+-+ ||...|++|.|++++ ...+.+| |.+-++|-.+
T Consensus 174 fGG~egHrdeVLSvD~~~~g-----d~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 174 FGGVEGHRDEVLSVDFSLDG-----DRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ecccccccCcEEEEEEcCCC-----CeeeccCCcceEEEEecC
Confidence 844 899999999999983 3444444 5544444433
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=2.7e-05 Score=90.43 Aligned_cols=73 Identities=21% Similarity=0.383 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccc
Q 000170 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVP 578 (1950)
Q Consensus 499 VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~r 578 (1950)
-+|+.||+.|++||+|..||.|.|||+.|....+++. +|..||++++|++|| |..+..|.|-. ++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dg----r~LltsS~D~s----------i~ 90 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDG----RKLLTSSRDWS----------IK 90 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCC----CEeeeecCCce----------eE
Confidence 8899999999999999999999999999999888886 999999999999983 43333333432 56
Q ss_pred cccceeee
Q 000170 579 LLNRFSIK 586 (1950)
Q Consensus 579 l~~~~t~~ 586 (1950)
+|+...+.
T Consensus 91 lwDl~~gs 98 (405)
T KOG1273|consen 91 LWDLLKGS 98 (405)
T ss_pred EEeccCCC
Confidence 77765544
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.0014 Score=76.82 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=59.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc----eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS----AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~----~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
.+|..-|+++.|..-|.++|+|+.|++|+|||..++. |.-.. ..|.+.|+.|.|.+-.+ ++.++.++-+++.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEf---GqvvA~cS~Drtv 85 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEF---GQVVATCSYDRTV 85 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccc---cceEEEEecCCce
Confidence 4577889999999999999999999999999986554 33333 38999999999998654 7888888866654
No 148
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.81 E-value=0.00013 Score=89.19 Aligned_cols=110 Identities=19% Similarity=0.359 Sum_probs=80.8
Q ss_pred ccccCCCc-EEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSP-QVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~p-t~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+.+..+.| .|.++++ ..||+||..|.-+|.|... +.. +.+ ...+.++++|+|||||.+||+|+.|
T Consensus 402 wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~-------~~l--v~~----~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 402 WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTET-------QDL--VTI----HTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred EEEEecCceeEeeccCcceEEEeeccceEEEEeccc-------cee--EEE----EecCCceEEEEEcCCCCEEEEecCC
Confidence 33444443 7888876 6899999999999999732 221 111 1237899999999999999999999
Q ss_pred CcEEEEECCCCceeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 518 GHVTVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
++|.||-+.......+..+ .|.++|+|+.|+.|+ ......|+|-.
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~e 514 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYE 514 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceE
Confidence 9999999987654433333 345999999999882 44556666665
No 149
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.80 E-value=0.00014 Score=87.45 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=86.7
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
-|..++.-+++|..|++|+.||.+.. .+.. .-+ ..|.||+|..|+||..|.+.+.|.++.+.|+.+.
T Consensus 307 DI~~~~~~~~SgH~DkkvRfwD~Rs~---------~~~~-sv~---~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 307 DIVCSISDVISGHFDKKVRFWDIRSA---------DKTR-SVP---LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred ceEecceeeeecccccceEEEeccCC---------ceee-Eee---cCcceeeEeeccCCeEEeeecCCCceeeeecccc
Confidence 35555677899999999999998642 1111 101 3579999999999999999999999999999998
Q ss_pred ceeeeecc-Cc--CCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 529 SAAKVITG-EH--TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 529 ~~l~tl~~-~H--~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
...++++- +- .+-++.+.|+|++ + .+.+|..+|.| .+|+++++++.+.+.++
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~----~--YvaAGS~dgsv--------~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDG----S--YVAAGSADGSV--------YIWSVFTGKLEKVLSLS 428 (459)
T ss_pred cEEEEeeccccccccccceeEECCCC----c--eeeeccCCCcE--------EEEEccCceEEEEeccC
Confidence 87777641 11 2448999999973 2 33334444544 45666788888888884
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=5.4e-05 Score=88.08 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred eeEEecCChhHHHHhhhccccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCc--ccceeeeecccCCCCCCC
Q 000170 421 GYFDVDANNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDS--MDSKMMMLGLLGDRSPAP 498 (1950)
Q Consensus 421 ~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~--~~~k~~~l~~~~~~h~~~ 498 (1950)
.+..|+--+.+-..|.-.+..... .++.|+|.|||+..-.--|.||..-+. .|. ++.+..+ ++.+|.++
T Consensus 210 ~i~lw~lkGq~L~~idtnq~~n~~---aavSP~GRFia~~gFTpDVkVwE~~f~---kdG~fqev~rvf---~LkGH~sa 280 (420)
T KOG2096|consen 210 KICLWDLKGQLLQSIDTNQSSNYD---AAVSPDGRFIAVSGFTPDVKVWEPIFT---KDGTFQEVKRVF---SLKGHQSA 280 (420)
T ss_pred cEEEEecCCceeeeeccccccccc---eeeCCCCcEEEEecCCCCceEEEEEec---cCcchhhhhhhh---eeccchhh
Confidence 455665445544444432222211 356677899999988888999976221 111 1222222 45789999
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 499 VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
|++.|||++++.+++.+.||+++|||+.
T Consensus 281 V~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 281 VLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9999999999999999999999999986
No 151
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.79 E-value=9.1e-05 Score=92.97 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=89.0
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.--+++.+ +++++|+.|..|+|||+.. +|+...-....+|.|..--+...|.|-|||+.+.|.++.++|
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~s---------gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIES---------GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccc---------cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 33456655 7999999999999999843 222211012345667777788899999999999999999999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
..+|+|..+.. ||.-.|+.+.|++| =+|..-+++|...-||....+
T Consensus 670 f~sgEcvA~m~-GHsE~VTG~kF~nD----CkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 670 FVSGECVAQMT-GHSEAVTGVKFLND----CKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred eccchhhhhhc-Ccchheeeeeeccc----chhheeecCCceEEEEECchh
Confidence 99999998886 99999999999998 578777777776555554443
No 152
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.79 E-value=5.9e-05 Score=89.18 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=80.4
Q ss_pred cCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCC-ccC--cccceeeeeccc-------------------------
Q 000170 443 DHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAH-HRD--SMDSKMMMLGLL------------------------- 491 (1950)
Q Consensus 443 ~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~-~~d--~~~~k~~~l~~~------------------------- 491 (1950)
.+-++.|+.+++ +.||+|.+|+.|.+||.+++.. +.- .+....++|.+.
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccc
Confidence 344458899987 6799999999999999976421 000 000012233211
Q ss_pred --CCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcC---CCeEEEEEecCCCccCCceEEEEecCC
Q 000170 492 --GDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHT---SPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 492 --~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~---~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
-.+|.++|..++|||-|+-+++|+-|.+|+||.+..|.---+ -|+ ..|.+|+|+.| .+.++.++|+.
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi---YhtkRMq~V~~Vk~S~D-----skyi~SGSdd~ 337 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI---YHTKRMQHVFCVKYSMD-----SKYIISGSDDG 337 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh---hhHhhhheeeEEEEecc-----ccEEEecCCCc
Confidence 124778999999999999999999999999999998764222 343 68999999987 34444444543
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=8.7e-05 Score=87.50 Aligned_cols=106 Identities=19% Similarity=0.307 Sum_probs=84.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCC-CCCeEEEEEcCCCCEEEEe----cCCCcEEEEECCCC
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRS-PAPVTAMCFNQPGDLLLAG----YADGHVTVWDVQRA 528 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h-~~~VtsLafS~DG~~LasG----~~dG~I~lWDl~~g 528 (1950)
+..|.+|++||+|++||+|... +. .++.+ +.+ ..+-+|++.+..+..+++| ..+-.|.+||+...
T Consensus 84 ~h~v~s~ssDG~Vr~wD~Rs~~-----e~-a~~~~----~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~ 153 (376)
T KOG1188|consen 84 PHGVISCSSDGTVRLWDIRSQA-----ES-ARISW----TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE 153 (376)
T ss_pred CCeeEEeccCCeEEEEEeecch-----hh-hheec----cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc
Confidence 4679999999999999998631 11 12222 122 3588999999999999999 45777999999987
Q ss_pred ce-eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 529 SA-AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 529 ~~-l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+. ++.+.+.|..-||+|+|.|. ...+++++..+|+|.+...
T Consensus 154 qq~l~~~~eSH~DDVT~lrFHP~-----~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 154 QQLLRQLNESHNDDVTQLRFHPS-----DPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred cchhhhhhhhccCcceeEEecCC-----CCCeEEeecccceEEeeec
Confidence 65 78888899999999999997 4578999999998887764
No 154
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00021 Score=81.47 Aligned_cols=155 Identities=16% Similarity=0.241 Sum_probs=110.8
Q ss_pred hccCCCccccccCccccccccccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEE
Q 000170 393 ASTGLHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVV 469 (1950)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vf 469 (1950)
+=++..|-|..+-|.+...| .-.+.+|...+-.. -| +.|+.+.-.+.++--+. ..+.+++-||+|++|
T Consensus 62 ~LfdV~Wse~~e~~~~~a~G----DGSLrl~d~~~~s~---Pi--~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASG----DGSLRLFDLTMPSK---PI--HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred ceeEeeecCCCcceEEEEec----CceEEEeccCCCCc---ch--hHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 55788999999888877655 33555555322111 11 13455555566665553 457778999999999
Q ss_pred eCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEe
Q 000170 470 PGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFL 548 (1950)
Q Consensus 470 d~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~ 548 (1950)
+.-- .+ .++ +..+|..-|-..+||| ++..+|+.+.||+.++||+........|. +|+..|+++.|+
T Consensus 133 ~~~r-------~~--Sv~---Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 133 DPNR-------PN--SVQ---TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWS 199 (311)
T ss_pred cCCC-------Cc--ceE---eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeeccc
Confidence 8621 11 122 3456999999999998 57899999999999999998755444575 999999999999
Q ss_pred cCCCccCCceEEEEecCCceEEEEcc
Q 000170 549 GQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 549 ~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.- ++.++++++.++.|..+..
T Consensus 200 ky-----~~~vl~Tg~vd~~vr~wDi 220 (311)
T KOG0277|consen 200 KY-----NHNVLATGGVDNLVRGWDI 220 (311)
T ss_pred cc-----CCcEEEecCCCceEEEEeh
Confidence 74 6788999999877766654
No 155
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.77 E-value=2e-05 Score=100.25 Aligned_cols=121 Identities=14% Similarity=0.269 Sum_probs=94.9
Q ss_pred Ccceee--eEEecCChhHHHHhhh-ccccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecc
Q 000170 416 GSTTLG--YFDVDANNTITQTIAS-QAFRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL 490 (1950)
Q Consensus 416 ~~~~~~--~~~~~~~~~iS~~i~s-~~f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~ 490 (1950)
+.+.|+ .+-+..-.++-+.|.. ...+.++..+-|.+.+ +.||..|+.+-.|+||... ++. |++
T Consensus 159 ~a~~i~~at~~~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e---------t~~--~lA- 226 (1113)
T KOG0644|consen 159 RAPSIGCATFSIAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME---------TAR--CLA- 226 (1113)
T ss_pred cCcccccceeeecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeecc---------chh--hhc-
Confidence 344444 4555444555555543 2445567778888887 4799999999999999862 122 433
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEec
Q 000170 491 LGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 491 ~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
...+|.+.||-++.|....++|+|+.|--|++|-+..|..+.++. ||+++||.|+|+|
T Consensus 227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP 284 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSP 284 (1113)
T ss_pred cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh-ccccceeeeccCc
Confidence 446799999999999999999999999999999999999998887 9999999999998
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.77 E-value=3.3e-05 Score=95.54 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=79.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
..+|||+.+|.|.+|-+-.+.-....++... ..+.|...|++|.|.|= ...||+++.|-+|+|||+.+++....
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~-----~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~ 715 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEK-----ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSR 715 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcce-----eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhe
Confidence 4699999999999998743210000011111 12458889999999985 66899999999999999999998777
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+. ||+..|.+++|++++ |..+.|+-|. .++.|.
T Consensus 716 l~-gHtdqIf~~AWSpdG----r~~AtVcKDg--~~rVy~ 748 (1012)
T KOG1445|consen 716 LV-GHTDQIFGIAWSPDG----RRIATVCKDG--TLRVYE 748 (1012)
T ss_pred ec-cCcCceeEEEECCCC----cceeeeecCc--eEEEeC
Confidence 86 999999999999983 6666776554 444444
No 157
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.0005 Score=76.73 Aligned_cols=145 Identities=15% Similarity=0.223 Sum_probs=89.1
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeC------CCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPG------KYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~------k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
.+.++++++ .+-|||++..+.+|.-+ +.. |+...+-....| .-...|.|+|.|.||||+|..+|+|+.|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~-hea~~~pp~v~~--kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA-HEAAKQPPSVLC--KRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccc-cccccCCCeEEe--eeccccCccEEEEEecCccCeEEecCCC
Confidence 345666664 78999999999887643 211 111111111112 1234589999999999999999999999
Q ss_pred CcEEEEECCCCceeeeec----cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 518 GHVTVWDVQRASAAKVIT----GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~----~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
.+|++.-.+.-+|..+-. .-|.+.|..++|..+.. ..+..++.++--+-.+|.-... ++.--.-++|
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~-s~~~il~s~gagdc~iy~tdc~--------~g~~~~a~sg 181 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE-SGGAILASAGAGDCKIYITDCG--------RGQGFHALSG 181 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-cCceEEEecCCCcceEEEeecC--------CCCcceeecC
Confidence 999998887666532211 25789999999996633 2233333333222223333321 1222345778
Q ss_pred CccccEEEee
Q 000170 594 QKTGIVLSAS 603 (1950)
Q Consensus 594 ~~~g~Vla~s 603 (1950)
|+|-||++-
T Consensus 182 -htghilaly 190 (350)
T KOG0641|consen 182 -HTGHILALY 190 (350)
T ss_pred -CcccEEEEE
Confidence 888887643
No 158
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.0001 Score=86.04 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCC--ccCcccc----eeeeecccCC-------------------------
Q 000170 445 GSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAH--HRDSMDS----KMMMLGLLGD------------------------- 493 (1950)
Q Consensus 445 G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~--~~d~~~~----k~~~l~~~~~------------------------- 493 (1950)
+.+-|+.+.++.|+|||++-.|++||++.--. |.-.... .++.+-+..+
T Consensus 136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred ceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 36889999999999999999999999863210 0000011 1121111000
Q ss_pred -----CC---------CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceE
Q 000170 494 -----RS---------PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFK 559 (1950)
Q Consensus 494 -----~h---------~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~ 559 (1950)
-| --||.+|+|+|=..++|+|+.||-|.+||+.+.+.++.+. .-...|.+++|+.+ +-.+
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~slsfs~d-----G~~L 289 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSLSFSMD-----GSLL 289 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEEEeccC-----CCeE
Confidence 01 1389999999999999999999999999999999988886 44678999999987 4466
Q ss_pred EEEec
Q 000170 560 AVTGD 564 (1950)
Q Consensus 560 ~vssD 564 (1950)
||+++
T Consensus 290 Aia~s 294 (323)
T KOG1036|consen 290 AIASS 294 (323)
T ss_pred EEEec
Confidence 77654
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00029 Score=85.34 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=106.4
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCcc---------------
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHR--------------- 478 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~--------------- 478 (1950)
.+-.++++.|..|.++-.-+ ..++.+.++.+++ ++||+=+.+ .-+||+...+.+-+
T Consensus 164 ~dg~lRv~~~Ps~~t~l~e~------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cR 236 (398)
T KOG0771|consen 164 TDGTLRVWEWPSMLTILEEI------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCR 236 (398)
T ss_pred ccceEEEEecCcchhhhhhH------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhce
Confidence 45567888888888776543 4677788887775 688887777 89999986652100
Q ss_pred ---Ccccceeeee-ccc--CCC----------------------CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 000170 479 ---DSMDSKMMML-GLL--GDR----------------------SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 479 ---d~~~~k~~~l-~~~--~~~----------------------h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~ 530 (1950)
|+.. ..+.+ ..+ +.. ....|+||+.|.||+++|.|..||.|-|+++.+-++
T Consensus 237 F~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 237 FSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR 315 (398)
T ss_pred ecccCCC-ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee
Confidence 0000 00111 000 000 123799999999999999999999999999999999
Q ss_pred eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 531 AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 531 l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
++-+..+|...||.|.|+|| +|...-+++|..-.|+....
T Consensus 316 ~~~vk~aH~~~VT~ltF~Pd----sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 316 LQYVKEAHLGFVTGLTFSPD----SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEeehhhheeeeeeEEEcCC----cCcccccccCCceeEEEEee
Confidence 99998899999999999998 56666788888766655543
No 160
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.73 E-value=0.0013 Score=85.19 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=79.8
Q ss_pred CCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEEecCCCc
Q 000170 445 GSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLAGYADGH 519 (1950)
Q Consensus 445 G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~LasG~~dG~ 519 (1950)
-.++|+.+++ +++|.|+.+|.|.+||.+.+. + .. ...+......|..+|+++.|-.+ ++-+++++.||.
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~---~--~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGS---D--TP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCC---C--CC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence 3468888875 899999999999999997532 1 00 12222344568999999999655 455999999999
Q ss_pred EEEEECCCCcee-e-----eec----cCc-CCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 520 VTVWDVQRASAA-K-----VIT----GEH-TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 520 I~lWDl~~g~~l-~-----tl~----~~H-~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|..|++..-... . ... ..+ ...++.++|.+.++ ...+.|=+.|.|+.-+
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-----~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-----NHFIVGTEEGKVYKGC 376 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-----ceEEEEcCCcEEEEEe
Confidence 999998754321 1 110 011 36899999998643 3444444557777643
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=97.72 E-value=0.0001 Score=84.29 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=79.3
Q ss_pred hhhccccccCCCcEEEEEcC-----CEEEEEeCCCcEEEEeCCCCC-------------C---ccCc-c-----------
Q 000170 435 IASQAFRRDHGSPQVLAVHP-----SFIAVGMSKGAIVVVPGKYSA-------------H---HRDS-M----------- 481 (1950)
Q Consensus 435 i~s~~f~~~~G~pt~ia~s~-----~~IAvGts~G~I~vfd~k~~~-------------~---~~d~-~----------- 481 (1950)
|....-+..-|+|+|....- -+++.|..+|.|++||+..+- . +.+. .
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence 33344566789999987431 358889999999999986520 0 0000 0
Q ss_pred -----cceeeeecccCC-----------CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEE
Q 000170 482 -----DSKMMMLGLLGD-----------RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHT 545 (1950)
Q Consensus 482 -----~~k~~~l~~~~~-----------~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v 545 (1950)
..+.+.+..... -.+-.|.-+.+-||++.+|+++-||.||+|.-++...+.++. -|..+|.+|
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~v 299 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAV 299 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEE
Confidence 000000000000 012346777788999999999999999999999999998887 999999999
Q ss_pred EEecC
Q 000170 546 LFLGQ 550 (1950)
Q Consensus 546 ~F~~d 550 (1950)
+|++|
T Consensus 300 Afspd 304 (323)
T KOG0322|consen 300 AFSPD 304 (323)
T ss_pred EeCCC
Confidence 99997
No 162
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00046 Score=81.13 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=101.4
Q ss_pred hccccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe
Q 000170 437 SQAFRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514 (1950)
Q Consensus 437 s~~f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG 514 (1950)
+..|+..-|.++++.++ |.++++.+.|-.+++||... +++.. +...+.--|..++|-...+.+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~---------g~~~~---ti~skkyG~~~~~Fth~~~~~i~s 74 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS---------GKQVK---TINSKKYGVDLACFTHHSNTVIHS 74 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC---------Cceee---EeecccccccEEEEecCCceEEEc
Confidence 34677778889999998 47888889999999999842 23222 111122348899999999999999
Q ss_pred cC--CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecC
Q 000170 515 YA--DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLD 592 (1950)
Q Consensus 515 ~~--dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~ 592 (1950)
+. |-+|+.-++.+.+.++.+. ||...|+++.-+|.+ .+-+.++-++ + +|+|+.++-+|+-++.
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~-----d~FlS~S~D~--------t-vrLWDlR~~~cqg~l~ 139 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKD-----DTFLSSSLDK--------T-VRLWDLRVKKCQGLLN 139 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCC-----CeEEecccCC--------e-EEeeEecCCCCceEEe
Confidence 88 8899999999999999997 999999999999862 3333333232 3 7889877666665554
Q ss_pred CCccccEEEeec
Q 000170 593 GQKTGIVLSASP 604 (1950)
Q Consensus 593 g~~~g~Vla~sp 604 (1950)
- ..-.|.|+.|
T Consensus 140 ~-~~~pi~AfDp 150 (311)
T KOG1446|consen 140 L-SGRPIAAFDP 150 (311)
T ss_pred c-CCCcceeECC
Confidence 3 2223555555
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0036 Score=73.47 Aligned_cols=115 Identities=12% Similarity=0.169 Sum_probs=79.5
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEEecCCCcEEE
Q 000170 447 PQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLAGYADGHVTV 522 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~LasG~~dG~I~l 522 (1950)
+.|+.++ |..+|.+++|++|.|||...+ ..+ .-....-..|.|+|..|.|-+- |+.+|+++.|++|.|
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~-----s~~---W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSD-----SGT---WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCC-----CCc---eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 4666554 689999999999999997431 111 1111112458999999999654 999999999999999
Q ss_pred EECCCC---------ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 523 WDVQRA---------SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 523 WDl~~g---------~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|+=+.. ....++. .-.+.|+.|+|.|. .-...+.++..+|++.+.-.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~----hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPK----HLGLKLAAASADGILRIYEA 143 (361)
T ss_pred eeecccccccccceeEEEEEee-cCCcceeEEEecch----hcceEEEEeccCcEEEEEec
Confidence 987421 1223443 34589999999985 12356777777776665543
No 164
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.66 E-value=8.6e-05 Score=84.11 Aligned_cols=69 Identities=16% Similarity=0.282 Sum_probs=54.6
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 000170 451 AVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 451 a~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~ 530 (1950)
.|...+.+.|..++.+..||+.++ .-+.. --.+|.|||-|+.|||||..-|+|++||+|+||-+.-++.
T Consensus 233 ~P~k~~fVaGged~~~~kfDy~Tg---------eEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 233 HPKKEFFVAGGEDFKVYKFDYNTG---------EEIGS--YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCCCceEEecCcceEEEEEeccCC---------ceeee--cccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 344467788999999999998542 11211 1256999999999999999999999999999999987664
No 165
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.66 E-value=0.00068 Score=77.37 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=71.3
Q ss_pred cCCCcEEEEEcC--CEEEE--EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec---
Q 000170 443 DHGSPQVLAVHP--SFIAV--GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY--- 515 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAv--Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~--- 515 (1950)
..|.+.+++-+| +.+|+ |...+.|.+||.+. +.+. .. +.+++..|+|||+|++||.|+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------~~i~---~~--~~~~~n~i~wsP~G~~l~~~g~~n 122 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------KKIF---SF--GTQPRNTISWSPDGRFLVLAGFGN 122 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------cEeE---ee--cCCCceEEEECCCCCEEEEEEccC
Confidence 356788888775 55443 66778999999842 1222 11 356789999999999999985
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
..|.|.+||+.+.+.+.+. .|. .++.+.|+|++ ++.+..++
T Consensus 123 ~~G~l~~wd~~~~~~i~~~--~~~-~~t~~~WsPdG----r~~~ta~t 163 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTF--EHS-DATDVEWSPDG----RYLATATT 163 (194)
T ss_pred CCcEEEEEECCCCEEeecc--ccC-cEEEEEEcCCC----CEEEEEEe
Confidence 3578999999998887665 343 57899999983 55444443
No 166
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.66 E-value=0.001 Score=83.99 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=79.6
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC---CCEEEEecCCCcEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP---GDLLLAGYADGHVT 521 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D---G~~LasG~~dG~I~ 521 (1950)
+.|+++++ +++|.|.--|.++|||+.. ...++ .-+.|.+.|-||.||.- .+.||+|+.|..|.
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~---------l~~~~---~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQE---------LEYTC---FMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehh---------hhhhh---heecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 46777765 8999999999999999832 22122 33568999999999854 57999999999999
Q ss_pred EEECCCC-ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 522 VWDVQRA-SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 522 lWDl~~g-~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
++|+.+. ..++++ ++|.+.|++|+|.+.| .+...+++-.+
T Consensus 530 V~Dv~rny~l~qtl-d~HSssITsvKFa~~g----ln~~MiscGAD 570 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTL-DGHSSSITSVKFACNG----LNRKMISCGAD 570 (1080)
T ss_pred EEecccccchhhhh-cccccceeEEEEeecC----CceEEEeccCc
Confidence 9999865 466777 5999999999999874 44555554333
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.64 E-value=0.0012 Score=82.56 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=70.6
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC
Q 000170 448 QVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR 527 (1950)
Q Consensus 448 t~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~ 527 (1950)
-|.+|+|+-+.++. +..+++||...| . .+ .+..+|..-|.|+|||.||+..|+|++|..|.+|.-+-
T Consensus 18 ~afkPDGsqL~lAA-g~rlliyD~ndG---------~--ll-qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA-GSRLLVYDTSDG---------T--LL-QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred eEECCCCceEEEec-CCEEEEEeCCCc---------c--cc-cccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 45667776666553 347999997321 1 11 25677999999999999999999999999999998653
Q ss_pred CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 528 ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 528 g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
-. ++.--|+..|-+..|.|- .|.++.++=
T Consensus 85 EG---~LkYSH~D~IQCMsFNP~-----~h~LasCsL 113 (1081)
T KOG1538|consen 85 EG---ILKYSHNDAIQCMSFNPI-----THQLASCSL 113 (1081)
T ss_pred cc---eeeeccCCeeeEeecCch-----HHHhhhcch
Confidence 22 233369999999999985 455555553
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00013 Score=90.70 Aligned_cols=74 Identities=16% Similarity=0.286 Sum_probs=60.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.+|.|.|+||+..+-|.|||+|+.||+|+||.+.+|.|++++. -.+.|.+|+|++.. ..-.++++-+.+ +++.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~---~~~vLAvA~~~~--~~iv 469 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLS---DLCVLAVAVGEC--VLIV 469 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCC---CceeEEEEecCc--eEEe
Confidence 4699999999999999999999999999999999999999884 44689999999973 233445554444 5554
Q ss_pred c
Q 000170 573 S 573 (1950)
Q Consensus 573 ~ 573 (1950)
+
T Consensus 470 n 470 (733)
T KOG0650|consen 470 N 470 (733)
T ss_pred C
Confidence 4
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.63 E-value=0.00018 Score=85.69 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=86.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCC-CEEEEecCCCcEEEEECCCC---cee
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPG-DLLLAGYADGHVTVWDVQRA---SAA 531 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG-~~LasG~~dG~I~lWDl~~g---~~l 531 (1950)
.+++|.-.+.|++|....+. -+ +=..+..+|+.+|--|+|||-. ..+|+|+.||+|+|||+..+ .++
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~-------W~--vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGS-------WK--VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ccccCccccceEeeeeccCc-------ee--ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 47888888899999764321 01 0011334599999999999974 58999999999999999988 344
Q ss_pred eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeE---EeecCCCccccEEEeecccc
Q 000170 532 KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKT---QCLLDGQKTGIVLSASPLLF 607 (1950)
Q Consensus 532 ~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s---~~ll~g~~~g~Vla~spLp~ 607 (1950)
-+ .+|++-|+-|.|+.. ..++.++++.|.. ++|+.+..+. --.|.- |++.|-++.-.|.
T Consensus 297 ~~--kAh~sDVNVISWnr~------~~lLasG~DdGt~--------~iwDLR~~~~~~pVA~fk~-Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 297 ST--KAHNSDVNVISWNRR------EPLLASGGDDGTL--------SIWDLRQFKSGQPVATFKY-HKAPITSIEWHPH 358 (440)
T ss_pred Ee--eccCCceeeEEccCC------cceeeecCCCceE--------EEEEhhhccCCCcceeEEe-ccCCeeEEEeccc
Confidence 33 599999999999964 3477777777744 4444332221 123444 8888855555553
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00013 Score=90.66 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=108.4
Q ss_pred hhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC
Q 000170 429 NTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ 506 (1950)
Q Consensus 429 ~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~ 506 (1950)
..+|++-....|+...|.|+++.++| .++.|+|.+ .|+|||+.. +.+ + . .+....-+|++|+++|
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~k-------qel---v-K-kL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSK-------QEL---V-K-KLLTGSKWISSMSIHP 617 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhH-------HHH---H-H-HHhcCCeeeeeeeecC
Confidence 45667766678999999999999998 689999876 799999832 111 0 0 1122356899999999
Q ss_pred CCCEEEEecCCCcEEEEECCCC-ceeeeeccCcCCCeEEEEEecCCCccCCceE-EEEecCCceEEEEccccccccccee
Q 000170 507 PGDLLLAGYADGHVTVWDVQRA-SAAKVITGEHTSPVVHTLFLGQDSQVTRQFK-AVTGDTKGLVQLHSLSVVPLLNRFS 584 (1950)
Q Consensus 507 DG~~LasG~~dG~I~lWDl~~g-~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~-~vssD~~G~V~~h~ft~~rl~~~~t 584 (1950)
.|.-|+.|+-|+.+..+|+.-+ +..+++. .|..+|++|+|.+. ..+ ++++|++-++.+|.---.-++..--
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr-~H~~avr~Va~H~r------yPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLR-LHEKAVRSVAFHKR------YPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhh-hhhhhhhhhhhccc------cceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 9999999999999999999865 5677776 89999999999973 444 5555666555666521111111100
Q ss_pred eeEEeecCCCcccc----EEEeeccc
Q 000170 585 IKTQCLLDGQKTGI----VLSASPLL 606 (1950)
Q Consensus 585 ~~s~~ll~g~~~g~----Vla~spLp 606 (1950)
+=-.+.|.| |... ||...-.|
T Consensus 691 iVPlK~L~g-H~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 691 IVPLKRLRG-HEKTNDLGVLDTIWHP 715 (733)
T ss_pred eEeeeeccC-ceeecccceEeecccC
Confidence 112355666 5444 66655555
No 171
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.59 E-value=0.0001 Score=89.72 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=80.9
Q ss_pred EEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 448 QVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 448 t~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
+|++... -|++.|+..|.|.|||++. + .+.. -..+|++.||+|.++....|||+++..|.|.|-.+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~----------k-l~hr-~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA----------K-LIHR-FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH----------H-HHhh-hccCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 3444432 7999999999999999852 2 1211 34668999999999999999999999999999999
Q ss_pred CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 526 QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 526 ~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
.++....++..+.+..|..+.|++. ...+++++.++|.|.+
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~s-----kr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPS-----KRFLLSIASDKGAVTL 191 (673)
T ss_pred ccCccccceecCCCCeEEEeecccc-----cceeeEeeccCCeEEE
Confidence 9999888885444566779999985 4445555555554433
No 172
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.57 E-value=0.0001 Score=89.62 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=82.7
Q ss_pred EEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 448 QVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 448 t~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
.++|+++ +......++|.|.|||++- + .++ .+..+|+..++||.+|+||+.|=+|+.|.+||-||+
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhn-------q---~~V--rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHN-------Q---TLV--RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEccc-------c---eee--ecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 3455555 6777889999999999841 2 122 256779999999999999999999999999999999
Q ss_pred CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 526 QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 526 ~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
..|..+... ..++.|.++.++|. +..++|+- +++.|+..+-+
T Consensus 581 regrqlqqh--dF~SQIfSLg~cP~-----~dWlavGM-ens~vevlh~s 622 (705)
T KOG0639|consen 581 REGRQLQQH--DFSSQIFSLGYCPT-----GDWLAVGM-ENSNVEVLHTS 622 (705)
T ss_pred hhhhhhhhh--hhhhhheecccCCC-----ccceeeec-ccCcEEEEecC
Confidence 998764221 22589999999985 56777775 55677766643
No 173
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.56 E-value=0.00011 Score=61.02 Aligned_cols=32 Identities=25% Similarity=0.713 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.+|.++|++|+|+|++.+||+|+.||+|++||
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45899999999999999999999999999998
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.54 E-value=0.0016 Score=80.22 Aligned_cols=257 Identities=19% Similarity=0.239 Sum_probs=139.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
..+++.++||.+.+-+.. ++ +. ..-+.|.++|.|-.||+||+-|++.++||.|++|. .+|-.--++
T Consensus 76 d~~~i~s~DGkf~il~k~----------~r--VE-~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS----------AR--VE-RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTV 141 (737)
T ss_pred ceEEEEcCCceEEEeccc----------ch--hh-hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHH
Confidence 579999999999998641 11 10 12256999999999999999999999999999998 446543344
Q ss_pred ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecccccccCCCC
Q 000170 535 TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLLFDESCGGA 614 (1950)
Q Consensus 535 ~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp~~~~~gs~ 614 (1950)
. ....+|.+++|-|+ ...++.+.- |.++.-.+. ++.-.. -.+ . |.|.||+++--+....+-+
T Consensus 142 ~-Q~~~~v~c~~W~p~-----S~~vl~c~g--~h~~IKpL~----~n~k~i-~Wk---A-HDGiiL~~~W~~~s~lI~s- 203 (737)
T KOG1524|consen 142 V-QNEESIRCARWAPN-----SNSIVFCQG--GHISIKPLA----ANSKII-RWR---A-HDGLVLSLSWSTQSNIIAS- 203 (737)
T ss_pred h-hcCceeEEEEECCC-----CCceEEecC--CeEEEeecc----ccccee-EEe---c-cCcEEEEeecCccccceee-
Confidence 2 44579999999987 334444432 333333321 111111 111 2 8888987776553111100
Q ss_pred CCCCCCCCcccccccccccccccccC-CcccccccCCCcccccE--EEEEeccEEEEEEeccCceeeeeccCCCCCCCCC
Q 000170 615 PLSSQGNSTASASSIGSMMGGVVGSD-TGWKLFNEGSSLVEEGV--VIFVTYQTALVVRLTPTLEVYAQIPRPDGVREGA 691 (1950)
Q Consensus 615 ~~~~~gn~~~~t~~~~~~~~~vv~~~-s~~k~~~~~~s~~~~gl--VAl~T~~~~~IV~l~P~~~v~~k~~rP~~v~~~s 691 (1950)
|..... +. -+| -|..+|| ++..++.+ ||+.+. +.+.|.-..+++ +.+|. .|+
T Consensus 204 -----gGED~k---fK-------vWD~~G~~Lf~--S~~~ey~ITSva~npd-~~~~v~S~nt~R----~~~p~---~GS 258 (737)
T KOG1524|consen 204 -----GGEDFR---FK-------IWDAQGANLFT--SAAEEYAITSVAFNPE-KDYLLWSYNTAR----FSSPR---VGS 258 (737)
T ss_pred -----cCCcee---EE-------eecccCccccc--CChhccceeeeeeccc-cceeeeeeeeee----ecCCC---ccc
Confidence 000000 00 011 1335565 34444443 455444 444444333333 45554 688
Q ss_pred CCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEE--Ee-eec--ceeE-------eeEEeccccceeeeecc
Q 000170 692 MPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVA--KL-VKS--ELKV-------YGKWSLDSAAIGVAWLD 759 (1950)
Q Consensus 692 lp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl--~~-~k~--~~~~-------~~~~~~~~~I~~l~WLs 759 (1950)
+-.|+|..-.++-...+.+ ...+.|++-..++..- +. .++ .+.. .--.++++.|++.. |+
T Consensus 259 ifnlsWS~DGTQ~a~gt~~-------G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~s-L~ 330 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTST-------GQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFS-LG 330 (737)
T ss_pred eEEEEEcCCCceeeccccC-------ceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeee-ec
Confidence 8899998754441111111 2246677655544321 11 011 0110 01223456677766 55
Q ss_pred CCeEEEEeecCeEEEEec
Q 000170 760 DQMLVVLTLLGQLYLYAR 777 (1950)
Q Consensus 760 ~~iL~vLt~s~~L~l~d~ 777 (1950)
=--|+|.|.. ++++|..
T Consensus 331 Y~hLvvaTs~-qvyiys~ 347 (737)
T KOG1524|consen 331 YGHLVVATSL-QVYIYSE 347 (737)
T ss_pred eeEEEEEecc-EEEEEec
Confidence 5556666754 6888874
No 175
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.53 E-value=0.00013 Score=88.76 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=72.8
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS 529 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~ 529 (1950)
+.+++..|.||..-.++-|||+... + ..+ ....+...-+..+|++|||.+...++..||.|.|||+.+..
T Consensus 473 L~pdgrtLivGGeastlsiWDLAap-------T-pri--kaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 473 LLPDGRTLIVGGEASTLSIWDLAAP-------T-PRI--KAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred ecCCCceEEeccccceeeeeeccCC-------C-cch--hhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce
Confidence 4556678999999999999999531 1 111 11233334567889999999999999999999999999999
Q ss_pred eeeeeccCcCCCeEEEEEecC
Q 000170 530 AAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 530 ~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.++.+. ||+..+.+|..+.|
T Consensus 543 ~Vrqfq-GhtDGascIdis~d 562 (705)
T KOG0639|consen 543 LVRQFQ-GHTDGASCIDISKD 562 (705)
T ss_pred eeeccc-CCCCCceeEEecCC
Confidence 999997 99999999999987
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.00028 Score=83.60 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=94.0
Q ss_pred HHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE
Q 000170 433 QTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL 510 (1950)
Q Consensus 433 ~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~ 510 (1950)
+-+-....+..+|-+.+|.++. .++|+|..+-.+++|++.+-.+. ...|.+.+ .+..|.+.|-||+|+...+.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~---k~~KPI~~--~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR---KTPKPIGV--MEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh---cCCCCcee--ccCccccceEEEEEccCCee
Confidence 3344456678899999999874 79999999999999997432111 11122222 23557799999999999999
Q ss_pred EEEecCCCcEEEEECCCCceeeeeccCcC---CCeEEEEEecCCCccCCceEEEEecCC
Q 000170 511 LLAGYADGHVTVWDVQRASAAKVITGEHT---SPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 511 LasG~~dG~I~lWDl~~g~~l~tl~~~H~---~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
|-+|..+|+|.+-|+.+.+.+.+. .|+ ++|.++.-+|- .++.++++|++
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~--~~~~~~~~VY~m~~~P~-----DN~~~~~t~~~ 171 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVA--NENNNRGDVYHMDQHPT-----DNTLIVVTRAK 171 (609)
T ss_pred EecCCCcceeEeeecccceeeeee--cccCcccceeecccCCC-----CceEEEEecCc
Confidence 999999999999999999988777 464 59999988873 57888888775
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.50 E-value=0.00031 Score=84.05 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=87.1
Q ss_pred EEecCChhHHHHhhh-ccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccce-eeeecccCCCCCC
Q 000170 423 FDVDANNTITQTIAS-QAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSK-MMMLGLLGDRSPA 497 (1950)
Q Consensus 423 ~~~~~~~~iS~~i~s-~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k-~~~l~~~~~~h~~ 497 (1950)
|.|=+++++-+.=.+ +-+..+.|.+.-++-++ +.||+|+.|.+|.||.+-.+. -..+.. .+. .+.+|+-
T Consensus 59 f~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~---l~~~ltepvv---~L~gH~r 132 (472)
T KOG0303|consen 59 FLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG---LTRDLTEPVV---ELYGHQR 132 (472)
T ss_pred eeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcc---cccCcccceE---EEeecce
Confidence 444455655544332 45566677776666554 689999999999999873211 001100 011 2356999
Q ss_pred CeEEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCC
Q 000170 498 PVTAMCFNQP-GDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQD 551 (1950)
Q Consensus 498 ~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~ 551 (1950)
.|-.|+|.|- -..|++++.|.+|.|||+.+|+.+-++. |..-|+++.|+.|+
T Consensus 133 rVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDG 185 (472)
T ss_pred eEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCC
Confidence 9999999886 4588999999999999999999988874 99999999999884
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.48 E-value=0.00079 Score=76.37 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=51.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
|..+.-||.+.-||+..+ + +.. ...+|+.-|.|++--.-..-+.+|++||++++||++++++++++.
T Consensus 129 i~~AgGD~~~y~~dlE~G---------~-i~r--~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 129 ILFAGGDGVIYQVDLEDG---------R-IQR--EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred EEEecCCeEEEEEEecCC---------E-EEE--EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 444448999999998432 2 211 335699999999984445558999999999999999999998884
No 179
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0008 Score=84.49 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=81.9
Q ss_pred hhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC
Q 000170 429 NTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ 506 (1950)
Q Consensus 429 ~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~ 506 (1950)
+.|+..+... ..+|.++|+.-+. .-|-++..++.|..|+.+.. ..++. .......|.+++++|
T Consensus 90 g~it~~~st~---~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------~~~~~---~~~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 90 GEITAKLSTD---KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------VIIRI---WKEQKPLVSSLCISP 154 (541)
T ss_pred CeEEEEEecC---CCCCcceeeecccccCceEecCCceeEEEEecccc---------eeeee---eccCCCccceEEEcC
Confidence 4455555433 3688889887664 46889999999999998531 22221 123466799999999
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 507 PGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 507 DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
||..|++|| +.|++||+++++.+.+++ ||.++|..+.|.-+
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTL 195 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEe
Confidence 999999987 899999999999999998 99999999999964
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.44 E-value=0.00054 Score=79.28 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=63.5
Q ss_pred EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCCcEEEEECCCCc-eeeeec
Q 000170 458 AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADGHVTVWDVQRAS-AAKVIT 535 (1950)
Q Consensus 458 AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG~I~lWDl~~g~-~l~tl~ 535 (1950)
+..|+++++..||.++- ++.. . .-+.|...|..|.|+|.-+ +||+|+.||-|+|||..+.+ .++.+.
T Consensus 187 v~tt~d~tl~~~D~RT~---------~~~~-s-I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 187 VATTSDSTLQFWDLRTM---------KKNN-S-IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred EEEeCCCcEEEEEccch---------hhhc-c-hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC
Confidence 33468999999999741 1111 1 2245777899999999966 78999999999999998765 567776
Q ss_pred cCcCCCeEEEEEecC
Q 000170 536 GEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d 550 (1950)
+|+..|++|.|.+-
T Consensus 256 -~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 256 -GHSHWVWAVRFNPE 269 (370)
T ss_pred -CCceEEEEEEecCc
Confidence 99999999999985
No 181
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.0019 Score=75.77 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=76.0
Q ss_pred cCCCc-EEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSP-QVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~p-t~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+++.| +++++.+ ..+++|+.+|.|+.+|+..+ .... ...|..+|+||.+++--..+++|+-|++|
T Consensus 52 ~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~---------~~~~----igth~~~i~ci~~~~~~~~vIsgsWD~~i 118 (323)
T KOG1036|consen 52 KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG---------NEDQ----IGTHDEGIRCIEYSYEVGCVISGSWDKTI 118 (323)
T ss_pred ecCCceeeeeccCCceEEEeccCceEEEEEecCC---------ccee----eccCCCceEEEEeeccCCeEEEcccCccE
Confidence 45554 7777765 68999999999999998432 1112 23488999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEE-EecCCc
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAV-TGDTKG 567 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~v-ssD~~G 567 (1950)
++||.....+..++. -..+|.++.-.+ +.++| +.|.+-
T Consensus 119 k~wD~R~~~~~~~~d--~~kkVy~~~v~g-------~~LvVg~~~r~v 157 (323)
T KOG1036|consen 119 KFWDPRNKVVVGTFD--QGKKVYCMDVSG-------NRLVVGTSDRKV 157 (323)
T ss_pred EEEeccccccccccc--cCceEEEEeccC-------CEEEEeecCceE
Confidence 999998755554443 234777776664 46777 556553
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.41 E-value=0.0015 Score=87.08 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=88.6
Q ss_pred ecCChhHHHHhhhccccccCCCcEEEEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEE
Q 000170 425 VDANNTITQTIASQAFRRDHGSPQVLAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTA 501 (1950)
Q Consensus 425 ~~~~~~iS~~i~s~~f~~~~G~pt~ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~Vts 501 (1950)
|.+-+.+-.+|..+ .+.+..+|++ +.++++|+.||+|++||.+.-.-.. ...++.+ +-....++|++
T Consensus 1034 W~p~G~lVAhL~Eh-----s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--~s~rS~l---tys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEH-----SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--GSARSEL---TYSPEGSRVEK 1103 (1431)
T ss_pred CCccceEeehhhhc-----cccccceeecCCCCceEEEecCCceEEEeeehhhhcCc--ceeeeeE---EEeccCCceEE
Confidence 77767766666633 3333445554 4899999999999999986421000 0111111 11224678999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEECCCC--c-----eeeeeccCc-CCCeEEE-EEecCCCccCCceEEEEecCCceEEEE
Q 000170 502 MCFNQPGDLLLAGYADGHVTVWDVQRA--S-----AAKVITGEH-TSPVVHT-LFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 502 LafS~DG~~LasG~~dG~I~lWDl~~g--~-----~l~tl~~~H-~~~I~~v-~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
+.+-+.|+.+|+|..||.|.+.++... + +.+.. +.| .+.|+++ +|.... ..+.++.+.+-+|.|.+-
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~-n~~~~g~vv~m~a~~~~~---~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP-NLKKDGVVVSMHAFTAIV---QSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc-cccCCCceEEeecccccc---cceeEEEEEeccceEEec
Confidence 999999999999999999999999762 1 22222 233 3556666 566542 124666677777766665
Q ss_pred cccccccc
Q 000170 573 SLSVVPLL 580 (1950)
Q Consensus 573 ~ft~~rl~ 580 (1950)
..+...+|
T Consensus 1180 ~r~~~~~w 1187 (1431)
T KOG1240|consen 1180 TRMRHDAW 1187 (1431)
T ss_pred chhhhhHH
Confidence 54434455
No 183
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.00062 Score=83.01 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=75.5
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAA 531 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l 531 (1950)
..+++||+.+..|.|.+-..+++ +. . ..-+-.|.|+.++||.||+.|.+.+.+|.|.+||+....|+
T Consensus 313 hd~~fia~~G~~G~I~lLhakT~-------el---i---~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 313 HDSNFIAIAGNNGHIHLLHAKTK-------EL---I---TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCL 379 (514)
T ss_pred CCCCeEEEcccCceEEeehhhhh-------hh---h---heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceE
Confidence 33589999999999999876432 11 1 11234688999999999999999999999999999999999
Q ss_pred eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 532 KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 532 ~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+.+.+.=...=++++-+.+ +. .+.+|.+.|+|-+...
T Consensus 380 ~rf~D~G~v~gts~~~S~n-----g~-ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 380 HRFVDDGSVHGTSLCISLN-----GS-YLATGSDSGIVNIYDG 416 (514)
T ss_pred EEEeecCccceeeeeecCC-----Cc-eEEeccCcceEEEecc
Confidence 9886433333456665654 33 4444555677777663
No 184
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.36 E-value=0.0016 Score=76.97 Aligned_cols=100 Identities=9% Similarity=0.087 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG~~dG~I~lWDl~~g~~l~t 533 (1950)
..++++..+|.|.+||...+ +.... .. ....+++++|++||++| +++..++.|++||+.+++.++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~---------~~~~~---~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 68 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL---------EVTRT---FP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT 68 (300)
T ss_pred cEEEEecCCCEEEEEECCCC---------ceEEE---EE-CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe
Confidence 46788899999999998431 11111 11 12347789999999987 6788899999999999998877
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+. .|. .+..++|+++ ++.+++++...|.++.+..
T Consensus 69 ~~-~~~-~~~~~~~~~~-----g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 69 LP-SGP-DPELFALHPN-----GKILYIANEDDNLVTVIDI 102 (300)
T ss_pred cc-CCC-CccEEEECCC-----CCEEEEEcCCCCeEEEEEC
Confidence 75 332 3567889987 4556666655566666554
No 185
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.32 Score=64.85 Aligned_cols=111 Identities=17% Similarity=0.299 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhhcCCccchHHHHHHHHHhcCchhhHHHhhHHHHhcCCCCCC--CHHHHHHHHHHHHhcCcHHHHH
Q 000170 936 EQFTRVGGVAVEFCVHINRTDILFDDIFSKFEAVQHRDTFLELLEPYILKDMLGSL--PPEIMQALVEHYSSKGWLQRVE 1013 (1950)
Q Consensus 936 e~~~~l~~~~iefCl~i~~~D~LF~~if~~f~~~~~~~iFle~LEp~IL~g~I~~l--PP~I~q~lv~~y~~~g~l~~lE 1013 (1950)
..++.++.+|-+||-.+|..-++ ++|+.|.. .++.|+- =|.|-.+ .|+|.-+.|+--...|....+|
T Consensus 676 qNlQi~VQvatky~eqlg~~~li--~lFE~fks--~eGL~yf-------LgSivn~seDpevh~KYIqAA~kt~QikEvE 744 (1666)
T KOG0985|consen 676 QNLQIVVQVATKYHEQLGAQALI--ELFESFKS--YEGLYYF-------LGSIVNFSEDPEVHFKYIQAACKTGQIKEVE 744 (1666)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHH--HHHHhhcc--chhHHHH-------HHHHhccccCchHHHHHHHHHHhhccHHHHH
Confidence 35677889999999888765443 45666553 4555431 1444444 4899889999999999999999
Q ss_pred HHHhccCCCCCCHHHHHHHHHHhcccc--hhhHHhhcccCCchhHHHHHH
Q 000170 1014 QCVLHMDISSLDFNQVVRLCREHGLHG--ALVYLFNKGLDDFRAPLEELL 1061 (1950)
Q Consensus 1014 ~~Il~LD~~sLDidqvi~LC~e~~Lyd--aLIYI~n~~l~DYvTPL~eLl 1061 (1950)
++.- |-.|.|..-|-.+-++-+|-| +||-||-| -||+--|+-.|
T Consensus 745 Ricr--esn~YdpErvKNfLkeAkL~DqlPLiiVCDR--f~fVhdlvlYL 790 (1666)
T KOG0985|consen 745 RICR--ESNCYDPERVKNFLKEAKLTDQLPLIIVCDR--FDFVHDLVLYL 790 (1666)
T ss_pred HHHh--ccccCCHHHHHHHHHhccccccCceEEEecc--cccHHHHHHHH
Confidence 9854 889999999999999999999 57899999 49988776544
No 186
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.31 E-value=0.00049 Score=80.22 Aligned_cols=94 Identities=21% Similarity=0.321 Sum_probs=66.0
Q ss_pred CCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCC-CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 495 SPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQR-ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 495 h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~-g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
....|++|+||| +.-++++|+-||+||+|+++. |...-.....|.++|.+++|+.|+ +.+.+++.+|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg------skVf~g~~Dk~---- 95 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG------SKVFSGGCDKQ---- 95 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC------ceEEeeccCCc----
Confidence 456799999999 666777999999999999987 454433334789999999999873 45555555542
Q ss_pred cccccccccceeeeEEeecCCCccccEEEeec
Q 000170 573 SLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 573 ~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
.++|+..+.+... +.. |.+.|-.+.-
T Consensus 96 ----~k~wDL~S~Q~~~-v~~-Hd~pvkt~~w 121 (347)
T KOG0647|consen 96 ----AKLWDLASGQVSQ-VAA-HDAPVKTCHW 121 (347)
T ss_pred ----eEEEEccCCCeee-eee-cccceeEEEE
Confidence 4567655554333 233 7777744444
No 187
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.30 E-value=0.00059 Score=86.42 Aligned_cols=111 Identities=19% Similarity=0.179 Sum_probs=80.7
Q ss_pred cEEEEEc--CCEEEEEeCC-----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 447 PQVLAVH--PSFIAVGMSK-----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~-----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+.|++++ +++||+.+.. -.|++|+... -++.. ....|.--||-|+|||||++|++.+.|.+
T Consensus 528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---------W~~~~---~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---------WLQVQ---ELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred EEEEEecCCCCEEeehhhhCCccceEEEEEeccc---------hhhhh---eecccceEEEEEEECCCCcEEEEeecCce
Confidence 7888888 5899988643 5589998621 11110 13558889999999999999999999999
Q ss_pred EEEEECCCCcee----eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQRASAA----KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~g~~l----~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+.||..++.... ..+ ..|+--|+.+.|+|++ ......|-|..-.||.+.-
T Consensus 596 ~sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde----~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDE----KYFATASRDKKVKVWEEPD 649 (764)
T ss_pred EEeeeeecccchhhhhccc-cccceEEEEcccCccc----ceeEEecCCceEEEEeccC
Confidence 999999765322 123 3899999999999983 3455555577655666553
No 188
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.27 E-value=0.00085 Score=82.01 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=67.4
Q ss_pred EEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC
Q 000170 449 VLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR 527 (1950)
Q Consensus 449 ~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~ 527 (1950)
|+.++. ..||+-+-|..|.+||.+.. ...+ ++. -..|.++++|+++|++|++|...|.|..||+..
T Consensus 215 cfspsne~l~vsVG~Dkki~~yD~~s~------~s~~--~l~-----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKKINIYDIRSQ------ASTD--RLT-----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred eecCCccceEEEecccceEEEeecccc------cccc--eee-----ecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 444443 56666667889999998531 1112 221 356899999999999999999999999999985
Q ss_pred -CceeeeeccCcCCCeEEEEEecC
Q 000170 528 -ASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 528 -g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
...+.+++ +|...|++|+|.+.
T Consensus 282 ~k~Pv~v~s-ah~~sVt~vafq~s 304 (673)
T KOG4378|consen 282 TKAPVAVRS-AHDASVTRVAFQPS 304 (673)
T ss_pred CCCCceEee-ecccceeEEEeeec
Confidence 45677776 99999999999973
No 189
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.0068 Score=74.29 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=104.2
Q ss_pred cceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcCC-EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCC
Q 000170 417 STTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHPS-FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRS 495 (1950)
Q Consensus 417 ~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~~-~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h 495 (1950)
.-++.+|||+ ++.-..|.|.-|+.-.-.-.+++++|. .|++++-+-....||+.. ++...+.......
T Consensus 234 d~~lrifqvD--Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~---------ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 234 DGTLRIFQVD--GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET---------AKVTKLKPPYGVE 302 (514)
T ss_pred CCcEEEEEec--CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc---------cccccccCCCCcc
Confidence 4467788885 445557777777665555577888886 899999999999999832 2322222222222
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
.-.+....+|+||.+||..+..|+|.|--..+++.+.++. -.+.|..++|+.| ++. ++.+-..|-||.++..
T Consensus 303 ~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSd----sk~--l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 303 EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSD----SKE--LLASGGTGEVYVWNLR 374 (514)
T ss_pred cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecC----CcE--EEEEcCCceEEEEecC
Confidence 4568888999999999999999999999999999887774 5688999999976 233 3333345678888875
Q ss_pred ccccccc
Q 000170 576 VVPLLNR 582 (1950)
Q Consensus 576 ~~rl~~~ 582 (1950)
......+
T Consensus 375 ~~~~~~r 381 (514)
T KOG2055|consen 375 QNSCLHR 381 (514)
T ss_pred CcceEEE
Confidence 4433333
No 190
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.47 Score=62.47 Aligned_cols=99 Identities=11% Similarity=0.135 Sum_probs=65.6
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-----CCEEEEecCCCcEEEEECC
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-----GDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-----G~~LasG~~dG~I~lWDl~ 526 (1950)
-.|.|+|+++.||+|.|..+-.+ ++ .+. -.-.-|+.+|+++|| .++.++|+..| +.|+.-+
T Consensus 81 ~~Gey~asCS~DGkv~I~sl~~~------~~-~~~------~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 81 LEGEYVASCSDDGKVVIGSLFTD------DE-ITQ------YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred cCCceEEEecCCCcEEEeeccCC------cc-cee------EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 34789999999999999976321 11 111 113578999999999 77899999999 8887643
Q ss_pred CCceeeeeccCc--CCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 527 RASAAKVITGEH--TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 527 ~g~~l~tl~~~H--~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
=-.-..... .| .++|.+|+|.++ ..+-+.|.+-.||-.
T Consensus 147 wlgnk~~v~-l~~~eG~I~~i~W~g~-------lIAWand~Gv~vyd~ 186 (846)
T KOG2066|consen 147 WLGNKDSVV-LSEGEGPIHSIKWRGN-------LIAWANDDGVKVYDT 186 (846)
T ss_pred hhcCcccee-eecCccceEEEEecCc-------EEEEecCCCcEEEec
Confidence 111111111 34 589999999964 566666665444443
No 191
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.20 E-value=0.001 Score=77.37 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=104.0
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCC----------Ccc-------Cc----------ccceeeeec-
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSA----------HHR-------DS----------MDSKMMMLG- 489 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~----------~~~-------d~----------~~~k~~~l~- 489 (1950)
+....|++.||++++ .+++.|+.|++-.||....+. |.. |. .++.++...
T Consensus 186 Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl 265 (481)
T KOG0300|consen 186 YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL 265 (481)
T ss_pred ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence 456889999999996 688999999999999621110 000 00 000011100
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 490 LLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 490 ~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
....+|.+.|.|-.|=..|+.+++|+-|.+-.+||+.+|.+++.++ ||....+|++=.|. +-+++++..+
T Consensus 266 ~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHpt------QrLVvTsSrD--- 335 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPT------QRLVVTSSRD--- 335 (481)
T ss_pred eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCc------ceEEEEeccC---
Confidence 0235689999999999999999999999999999999999999997 99999999988863 4455555444
Q ss_pred EEEcccccccccce-eeeEEeecCCCccccEEE
Q 000170 570 QLHSLSVVPLLNRF-SIKTQCLLDGQKTGIVLS 601 (1950)
Q Consensus 570 ~~h~ft~~rl~~~~-t~~s~~ll~g~~~g~Vla 601 (1950)
+.-|||+-+ ...+-.+|.| |+-.|-+
T Consensus 336 -----tTFRLWDFReaI~sV~VFQG-HtdtVTS 362 (481)
T KOG0300|consen 336 -----TTFRLWDFREAIQSVAVFQG-HTDTVTS 362 (481)
T ss_pred -----ceeEeccchhhcceeeeecc-cccceeE
Confidence 234788743 2346678888 8777743
No 192
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.19 E-value=0.0014 Score=79.90 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=81.6
Q ss_pred cccccCCCcEEEEEcC----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEE
Q 000170 439 AFRRDHGSPQVLAVHP----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLA 513 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~Las 513 (1950)
..|...|.++|++.+| +.||+|...|.|=+||+.. ++...+. +.+ +..|.++|++|.|+|-.+ ++.+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~---~~~d~d~--v~~---f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGT---QEKDKDG--VYL---FTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCC---CCCccCc--eEE---eccCCccccceEecCCChhheee
Confidence 5577899999999997 6899999999999999952 1111121 222 356899999999999654 7788
Q ss_pred ecCCCcEEEEECCCCceeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 514 GYADGHVTVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
.+-||+|++=|++++.---.+.. --...+.+..|+.+ ...++.+|.-|
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e------~~~vl~~~~~G 301 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAE------SRSVLFGDNVG 301 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCC------CccEEEeeccc
Confidence 88899999999998863222221 12345556667654 23566677777
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.18 E-value=0.0029 Score=79.48 Aligned_cols=119 Identities=15% Similarity=0.271 Sum_probs=78.1
Q ss_pred ccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCC----CccCcccceeeeecc-----------------cCC---
Q 000170 440 FRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSA----HHRDSMDSKMMMLGL-----------------LGD--- 493 (1950)
Q Consensus 440 f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~----~~~d~~~~k~~~l~~-----------------~~~--- 493 (1950)
.|.+--.+.|+|.+ |...|+|++|..|.+|+-+... -|.|.. .|+.+.+ +.+
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~I--QCMsFNP~~h~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAI--QCMSFNPITHQLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCee--eEeecCchHHHhhhcchhhccccChhhhhH
Confidence 34555567898887 5899999999999999864211 122211 1221110 000
Q ss_pred ---CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee--ccCcCCCeEEEEEecCCCccCCceEEE
Q 000170 494 ---RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI--TGEHTSPVVHTLFLGQDSQVTRQFKAV 561 (1950)
Q Consensus 494 ---~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl--~~~H~~~I~~v~F~~d~~~~~~~~~~v 561 (1950)
.....|.+-+|+.||++||-|..||+|.|-+- +|+....+ .+|-+++|++|+|++....|...+.+|
T Consensus 127 ~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 127 SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 12456788899999999999999999999864 44433233 457889999999998754433333333
No 194
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.17 E-value=0.0021 Score=76.47 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=78.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC------CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR------ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~------g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
.+|.|.|.+|-||.+|+|||+|+.|-++++|++.. ++.+......|.+-|.+++|.. +++.+.++...
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~------~N~~~~SG~~~ 126 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL------ENRFLYSGERW 126 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc------CCeeEecCCCc
Confidence 46999999999999999999999999999999863 3555544435679999999995 57899999999
Q ss_pred ceEEEEcccccccccceeeeEEeecCC-CccccEEEeecccc
Q 000170 567 GLVQLHSLSVVPLLNRFSIKTQCLLDG-QKTGIVLSASPLLF 607 (1950)
Q Consensus 567 G~V~~h~ft~~rl~~~~t~~s~~ll~g-~~~g~Vla~spLp~ 607 (1950)
|.|..|..- +.++.-++.. +.+|-|..++..|.
T Consensus 127 ~~VI~HDiE--------t~qsi~V~~~~~~~~~VY~m~~~P~ 160 (609)
T KOG4227|consen 127 GTVIKHDIE--------TKQSIYVANENNNRGDVYHMDQHPT 160 (609)
T ss_pred ceeEeeecc--------cceeeeeecccCcccceeecccCCC
Confidence 999999853 3333333333 24567877777664
No 195
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.15 E-value=0.0015 Score=86.40 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=70.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceee-
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAK- 532 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~- 532 (1950)
.-|||.|+.-|.|++|+..+ ++ +... ..+|-|.|-++.+|.||+++|+.+.|.+|++|++.+++.+.
T Consensus 145 ~~~i~~gsv~~~iivW~~~~-----dn---~p~~----l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHE-----DN---KPIR----LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEEEeccccccEEEEeccc-----cC---Ccce----ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence 36899999999999999853 22 1122 24599999999999999999999999999999999998776
Q ss_pred eeccCcCCCeEEEEEecC
Q 000170 533 VITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 533 tl~~~H~~~I~~v~F~~d 550 (1950)
+.. +|+.+|+.++|.+.
T Consensus 213 ~~f-gHsaRvw~~~~~~n 229 (967)
T KOG0974|consen 213 TGF-GHSARVWACCFLPN 229 (967)
T ss_pred ccc-cccceeEEEEeccc
Confidence 443 99999999999973
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.12 E-value=0.002 Score=77.44 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=81.8
Q ss_pred ceeeeEEecCChhHHHHhhhccc--cccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 418 TTLGYFDVDANNTITQTIASQAF--RRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 418 ~~~~~~~~~~~~~iS~~i~s~~f--~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
+.+.+-++ +-+.+++.+..+.. ..+.-.+--++-|+ +.+++.+.|.+|.+||+.++ ..++ +.
T Consensus 104 ~~v~vW~I-Pe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tg---------eali---~l 170 (472)
T KOG0303|consen 104 TKVMVWQI-PENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTG---------EALI---TL 170 (472)
T ss_pred ceEEEEEC-CCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCC---------ceee---ec
Confidence 33334444 55666666654422 22333344455554 67888889999999998543 1122 22
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcC-CCeEEEEEecC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHT-SPVVHTLFLGQ 550 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~-~~I~~v~F~~d 550 (1950)
+ |..-|.+++||.||++|++...|..|+|||..+|+++..-. +|. .+=..+.|.++
T Consensus 171 ~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 171 D-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLAS 227 (472)
T ss_pred C-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEecc
Confidence 2 88899999999999999999999999999999999886663 774 45556677765
No 197
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.005 Score=75.25 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=111.0
Q ss_pred hhhHHHHHHHhhhccCCCccccccCccccccccccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEE
Q 000170 381 PLELAEELEKKQASTGLHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFI 457 (1950)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~I 457 (1950)
.|-|+..++-=.|| |+|-+.+-|=.+..|.+...+ .-.-|.+++++.++ .+|
T Consensus 248 ~Ls~n~~~~nVLaS-------gsaD~TV~lWD~~~g~p~~s~------------------~~~~k~Vq~l~wh~~~p~~L 302 (463)
T KOG0270|consen 248 ALSWNRNFRNVLAS-------GSADKTVKLWDVDTGKPKSSI------------------THHGKKVQTLEWHPYEPSVL 302 (463)
T ss_pred HHHhccccceeEEe-------cCCCceEEEEEcCCCCcceeh------------------hhcCCceeEEEecCCCceEE
Confidence 56677776666666 777888888777777665322 12345678999885 799
Q ss_pred EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCCcEEEEECCCC-ceeeeec
Q 000170 458 AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADGHVTVWDVQRA-SAAKVIT 535 (1950)
Q Consensus 458 AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG~I~lWDl~~g-~~l~tl~ 535 (1950)
.+|+.||+|.++|.|.. +..++ .|. ..|.|-.++|.+-.. ...+|..||+++=+|+++. +++.++.
T Consensus 303 LsGs~D~~V~l~D~R~~-----~~s~~--~wk-----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~ 370 (463)
T KOG0270|consen 303 LSGSYDGTVALKDCRDP-----SNSGK--EWK-----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK 370 (463)
T ss_pred EeccccceEEeeeccCc-----cccCc--eEE-----eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE
Confidence 99999999999999741 11222 222 357899999988765 6778899999999999875 8888887
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+|..+|.+|.+.+. ...+++++-..+.|.+++|
T Consensus 371 -AHd~~ISgl~~n~~-----~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 371 -AHDDEISGLSVNIQ-----TPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred -eccCCcceEEecCC-----CCcceeeccccceEEEEee
Confidence 99999999999975 2345555666666655554
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.02 E-value=0.0011 Score=82.20 Aligned_cols=95 Identities=15% Similarity=0.301 Sum_probs=68.5
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
.++|...|||+||++||+-+.||.+||+|..+.+++-... --=++.++|+|+||+ ..+++++.|+ +|-.++|.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDG-----KyIvtGGEDD-LVtVwSf~ 362 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDG-----KYIVTGGEDD-LVTVWSFE 362 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCc-----cEEEecCCcc-eEEEEEec
Confidence 4689999999999999999999999999999887654332 123799999999993 4555555443 56666665
Q ss_pred ccccccceeeeEEeecCCCccccE--EEeeccc
Q 000170 576 VVPLLNRFSIKTQCLLDGQKTGIV--LSASPLL 606 (1950)
Q Consensus 576 ~~rl~~~~t~~s~~ll~g~~~g~V--la~spLp 606 (1950)
-.|+. .+. .| |++|| ++|.|..
T Consensus 363 erRVV----ARG----qG-HkSWVs~VaFDpyt 386 (636)
T KOG2394|consen 363 ERRVV----ARG----QG-HKSWVSVVAFDPYT 386 (636)
T ss_pred cceEE----Eec----cc-cccceeeEeecccc
Confidence 22222 221 35 99998 7888743
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.0041 Score=73.86 Aligned_cols=100 Identities=24% Similarity=0.413 Sum_probs=75.3
Q ss_pred cccccCCCc-EEEEEc--CCEEEEEeC----CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCE
Q 000170 439 AFRRDHGSP-QVLAVH--PSFIAVGMS----KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDL 510 (1950)
Q Consensus 439 ~f~~~~G~p-t~ia~s--~~~IAvGts----~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~ 510 (1950)
.+.++.|.| .|++.+ ...||.||. +-.|++||+|.. ++... + -.+.|..-||+|+|-| |-.+
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~-----qq~l~--~---~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE-----QQLLR--Q---LNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc-----cchhh--h---hhhhccCcceeEEecCCCCCe
Confidence 445556666 888885 578999974 567999999752 11111 1 1256899999999987 4779
Q ss_pred EEEecCCCcEEEEECCCCc----eeeeeccCcCCCeEEEEEecC
Q 000170 511 LLAGYADGHVTVWDVQRAS----AAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 511 LasG~~dG~I~lWDl~~g~----~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|++|+.||-|.|+|++... .+.++ .|.+.|-.++|+++
T Consensus 181 LlSGSvDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGWLSK 222 (376)
T ss_pred EEeecccceEEeeecCCCcchhhHHHhh--cccceeeeeeeecC
Confidence 9999999999999998763 34455 57788999999986
No 200
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.01 E-value=0.00098 Score=83.85 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=91.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeee-
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKV- 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~t- 533 (1950)
..+|+|..+|.|.+||.+...++-+ ++.+ . ....|.++|--+.|-|-...|++.+.|.+|++||++.+++...
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~e----e~~l-k-~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLE----ERQL-K-KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchh----hhhh-c-ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce
Confidence 4699999999999999865322201 1111 1 1235999999999999667899999999999999999988755
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
+--||...|-+++|.+.+ ..++++|-.+|-+.++... ...++.+.-.+.++.++ |++
T Consensus 139 ~~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R-~n~~d~~e~~~~~~~~~-~n~ 195 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCR-CNGVDALEEFDNRIYGR-HNT 195 (720)
T ss_pred eecccccccchhhhccCC-----CcceeeccCCCcEEEEEEe-ccchhhHHHHhhhhhcc-ccC
Confidence 223999999999999974 4677777666666555542 22233222235566666 554
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=96.96 E-value=0.0009 Score=76.84 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=58.2
Q ss_pred cCCCc-EEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 443 DHGSP-QVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 443 ~~G~p-t~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
+.|-- ..|-++++.+|++.-||.|+||++++. .. |+ ....|.+.|.++||+||...+|+|+.|+.|-
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-------~p----LA-VLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-------NP----LA-VLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccC-------Cc----hh-hhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 44442 568888899999999999999999652 11 11 2356899999999999999999999999999
Q ss_pred EEEC
Q 000170 522 VWDV 525 (1950)
Q Consensus 522 lWDl 525 (1950)
||++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=96.92 E-value=0.014 Score=70.01 Aligned_cols=97 Identities=24% Similarity=0.431 Sum_probs=71.5
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEec
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~ 515 (1950)
+..+...++++++++ .+++++.. +|.+.+|+...+ +.+. ....|...|++++|+|+|. .+++++
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---------KPLS---TLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---------ceEE---eeccCCCceEEEEEcCCcceEEEEec
Confidence 334555566777775 57888876 999999998421 1111 2234889999999999998 555559
Q ss_pred CCCcEEEEECCCCceee-eeccCcCCCeEEEEEecC
Q 000170 516 ADGHVTVWDVQRASAAK-VITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~-tl~~~H~~~I~~v~F~~d 550 (1950)
.||.|++||..++.+.. .+. +|...+ -..|.++
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~~ 252 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSPD 252 (466)
T ss_pred CCCcEEEEECCCCcEEeeecC-CCCcce-eEeECCC
Confidence 99999999999888887 454 887665 3388876
No 203
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.90 E-value=0.0024 Score=79.73 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=82.6
Q ss_pred hhHHHHhhhccc--cccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEE
Q 000170 429 NTITQTIASQAF--RRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMC 503 (1950)
Q Consensus 429 ~~iS~~i~s~~f--~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLa 503 (1950)
+.+++-.+-++= +..--.+++|-+|+ +.+|+.+.|-+|.+||++. ...+ + ...+|++.|-.+|
T Consensus 660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~-------~~~~--~---~l~gHtdqIf~~A 727 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN-------AKLY--S---RLVGHTDQIFGIA 727 (1012)
T ss_pred CCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh-------hhhh--h---eeccCcCceeEEE
Confidence 444444444322 33334478888887 7899999999999999953 1111 1 2356999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEECCCCce-eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 504 FNQPGDLLLAGYADGHVTVWDVQRASA-AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 504 fS~DG~~LasG~~dG~I~lWDl~~g~~-l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
|||||..+|+-..||+|++|+-.++.. ++.-.+.-.++--.|.|.-| ++.+++++-++
T Consensus 728 WSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd-----gr~viv~Gfdk 786 (1012)
T KOG1445|consen 728 WSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD-----GRIVIVVGFDK 786 (1012)
T ss_pred ECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEec-----CcEEEEecccc
Confidence 999999999999999999999987753 22222112244445667766 46666666443
No 204
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.0054 Score=69.89 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=88.9
Q ss_pred cccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCC-----CCCCeEEEEEcCCCCEEEE
Q 000170 439 AFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDR-----SPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~-----h~~~VtsLafS~DG~~Las 513 (1950)
.|+.+-|.+-.++++..++.+|.. |.|+-|.++..... ...|.+ |.-..+. .-..|.+|...|...-+..
T Consensus 57 ~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es---~~~K~l-we~~~P~~~~~~evPeINam~ldP~enSi~~ 131 (325)
T KOG0649|consen 57 PEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEES---LATKRL-WEVKIPMQVDAVEVPEINAMWLDPSENSILF 131 (325)
T ss_pred eccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhh---ccchhh-hhhcCccccCcccCCccceeEeccCCCcEEE
Confidence 346678888999999888888865 99999998643210 011111 1111111 2346899999866544444
Q ss_pred ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEe
Q 000170 514 GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQC 589 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ 589 (1950)
+..||.|.-||+.+|+..+++. ||+.-|-+|+--. +...++++-++| + +|+|+..+.++.+
T Consensus 132 AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~------~~~qilsG~EDG-------t-vRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRN------ANGQILSGAEDG-------T-VRVWDTKTQKHVS 192 (325)
T ss_pred ecCCeEEEEEEecCCEEEEEEc-CCcceeeeeeecc------cCcceeecCCCc-------c-EEEEeccccceeE
Confidence 4489999999999999999997 9999999998653 345677777776 3 6778654444333
No 205
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.1 Score=63.67 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 493 DRSPAPVTAMCFNQPGD-LLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~-~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
..+...|..|+|||... .|..++.+..|+|.|+.+..+..... +| .+||+++|.-|+ ...+-+||.+|+|+.
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde-----~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDE-----RHVIYAGLQNGMVLV 262 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCC-----cceeEEeccCceEEE
Confidence 34677899999999988 78999999999999999998887775 67 899999999872 457888999999999
Q ss_pred EcccccccccceeeeEEeecCCC-ccccEEEeeccc
Q 000170 572 HSLSVVPLLNRFSIKTQCLLDGQ-KTGIVLSASPLL 606 (1950)
Q Consensus 572 h~ft~~rl~~~~t~~s~~ll~g~-~~g~Vla~spLp 606 (1950)
.... .+-.-.+.+-++ ..++|+.++|++
T Consensus 263 yD~R-------~~~~~~~e~~a~~t~~pv~~i~~~~ 291 (463)
T KOG1645|consen 263 YDMR-------QPEGPLMELVANVTINPVHKIAPVQ 291 (463)
T ss_pred EEcc-------CCCchHhhhhhhhccCcceeecccC
Confidence 8753 111112222232 455678888876
No 206
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.83 E-value=0.0069 Score=81.24 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=84.1
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.++.+|..|.|+.||.+.. .. .|..+..-.+|.||+++.+|-|.|++.|...|.+.+||+.=+..+....
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~------~~----~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMR------HD----AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred eEEEEEeccceEEecchhh------hh----HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc
Confidence 7999999999999998641 01 1111233357999999999999999999999999999999888877776
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecC
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLD 592 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~ 592 (1950)
-+|..+|.++.-.+-- .+....|++-.. .|++ +-+|+..++.++.+|-
T Consensus 1235 ~P~~~~i~~v~~~~~~---~~~S~~vs~~~~----~~ne--vs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTY---PQESVSVSAGSS----SNNE--VSTWNMETGLRQTVLW 1282 (1431)
T ss_pred CcccCCcceEEeeccC---CCCceEEEeccc----CCCc--eeeeecccCcceEEEE
Confidence 5666899999766531 233455554443 2333 5667766665555553
No 207
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.83 E-value=0.12 Score=64.40 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=53.5
Q ss_pred CCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 445 GSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 445 G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
..++|+++.+ .-++.|.|+|.|.||+.... . +.. +...|.|.|-+|+.-.||+.|- |..|..|.+|
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~------~----~~k--~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~W 313 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTN------R----ISK--QVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILW 313 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCc------e----EEe--EeeecCCceEEEEEecCccEee-cCccceEEec
Confidence 5688988876 45899999999999987431 1 111 2226899999999999999766 9999999999
Q ss_pred E
Q 000170 524 D 524 (1950)
Q Consensus 524 D 524 (1950)
|
T Consensus 314 d 314 (626)
T KOG2106|consen 314 D 314 (626)
T ss_pred c
Confidence 9
No 208
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.0023 Score=74.62 Aligned_cols=124 Identities=15% Similarity=0.148 Sum_probs=87.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE------CCCC
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD------VQRA 528 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD------l~~g 528 (1950)
..++.++.|.+-+||.+.. ++|+. +-.+|.|+|.||+|++.|..+++|+.|++-.||- +.+.
T Consensus 161 pi~gtASADhTA~iWs~Es---------g~CL~---~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~ 228 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLES---------GACLA---TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN 228 (481)
T ss_pred cceeecccccceeEEeecc---------cccee---eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence 3577788889999998743 34443 3456999999999999999999999999999998 3221
Q ss_pred c----------------------------------eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 529 S----------------------------------AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 529 ~----------------------------------~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
. .+..++ ||.+.|....|... ++..+.++-+.
T Consensus 229 ~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~g-----g~Q~vTaSWDR-------- 294 (481)
T KOG0300|consen 229 NAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAG-----GQQMVTASWDR-------- 294 (481)
T ss_pred CCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcC-----cceeeeeeccc--------
Confidence 0 012223 56666777777754 22333333333
Q ss_pred cccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 575 SVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 575 t~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
| --+|++.+++-..+|.| |..+.-.++..|
T Consensus 295 T-AnlwDVEtge~v~~LtG-Hd~ELtHcstHp 324 (481)
T KOG0300|consen 295 T-ANLWDVETGEVVNILTG-HDSELTHCSTHP 324 (481)
T ss_pred c-ceeeeeccCceeccccC-cchhccccccCC
Confidence 2 45798888888889999 888876666666
No 209
>KOG4328 consensus WD40 protein [Function unknown]
Probab=96.81 E-value=0.0031 Score=77.11 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=69.2
Q ss_pred CcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceee-eecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 446 SPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMM-MLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 446 ~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~-~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.++.++++| .++|+|+.|++..|||.+. ...|.. ++. .-.|.-+|.+..|||+|-.|++-+.|..|+
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~-------l~~K~sp~ls--t~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQ-------LRGKASPFLS--TLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhh-------hcCCCCccee--cccccceeeeeEEcCCCCceEeeccCCceE
Confidence 567888886 6899999999999999964 222321 221 235899999999999988899999999999
Q ss_pred EEEC----CCCceeeeeccCcC------CCeEEEEEecC
Q 000170 522 VWDV----QRASAAKVITGEHT------SPVVHTLFLGQ 550 (1950)
Q Consensus 522 lWDl----~~g~~l~tl~~~H~------~~I~~v~F~~d 550 (1950)
|||. ++-..+.+| .|+ -....+.|-|+
T Consensus 395 v~dss~~sa~~~p~~~I--~Hn~~t~RwlT~fKA~W~P~ 431 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTI--PHNNRTGRWLTPFKAAWDPD 431 (498)
T ss_pred EeecccccccCCcccee--eccCcccccccchhheeCCC
Confidence 9999 444455555 342 13445678875
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.81 E-value=0.025 Score=66.13 Aligned_cols=103 Identities=20% Similarity=0.230 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec-ccCCCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCCCce--
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG-LLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQRASA-- 530 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~-~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~g~~-- 530 (1950)
+.|| |+.-.+++|.+... ++.-....++. .....+.+|+|+..|+. |-.++.+.+-|.+..|||+++|..
T Consensus 114 dlLA--Ts~D~LRlWri~~e----e~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 114 DLLA--TSSDFLRLWRIGDE----ESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred chhh--cccCeEEEEeccCc----CCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 4444 45568999987420 11100011121 12234788999999985 788999999999999999999844
Q ss_pred eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 531 AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 531 l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
++|---+|...|..|+|..++ .+.++.|++|-+
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s---~~~FASvgaDGS 220 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGS---RDVFASVGADGS 220 (364)
T ss_pred eeeEEEecCcceeEEEeccCc---cceEEEecCCCc
Confidence 455445999999999999852 233455555544
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.77 E-value=0.57 Score=57.57 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCcEEEEEc--CCEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-cCCCc
Q 000170 444 HGSPQVLAVH--PSFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG-YADGH 519 (1950)
Q Consensus 444 ~G~pt~ia~s--~~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG-~~dG~ 519 (1950)
.|.|..++++ +++|++|+ .++.|.+|++.. +++..... .. ...+....|+|+|||++|.++ +.+|.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~--------~g~l~~~~-~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD--------DGALTFAA-ES-PLPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECC--------CCceEEee-ee-cCCCCceEEEECCCCCEEEEEEcCCCe
Confidence 3667777776 47887764 578899998731 11111111 11 123457789999999987776 46899
Q ss_pred EEEEECCC-Cce---eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQR-ASA---AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~-g~~---l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|.+||+.+ |.. +..+ .+.....+++|+++ ++.++++....+.|+.+..
T Consensus 104 v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~p~-----g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQII--EGLEGCHSANIDPD-----NRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred EEEEEECCCCCCCCceeec--cCCCcccEeEeCCC-----CCEEEEeeCCCCEEEEEEE
Confidence 99999974 432 2222 23345667889986 4566666666666666554
No 212
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=96.76 E-value=0.0099 Score=71.36 Aligned_cols=98 Identities=21% Similarity=0.430 Sum_probs=73.4
Q ss_pred EEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC-CCcEEEEECCCCceeee
Q 000170 456 FIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA-DGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 456 ~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~-dG~I~lWDl~~g~~l~t 533 (1950)
+++..+. +|.|.+||.... ..... ....|...|++++|++++.+++++.. +|.+++||+.++..+.+
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~--------~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTP--------GKLIR---TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193 (466)
T ss_pred EEeccCCCCccEEEEEecCC--------CeEEE---EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe
Confidence 4444444 899999998420 01111 22458889999999999999999986 99999999999888888
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
+. +|...|..++|.++ +...++++..+|.+.
T Consensus 194 ~~-~~~~~v~~~~~~~~-----~~~~~~~~~~d~~i~ 224 (466)
T COG2319 194 LA-GHTDPVSSLAFSPD-----GGLLIASGSSDGTIR 224 (466)
T ss_pred ec-cCCCceEEEEEcCC-----cceEEEEecCCCcEE
Confidence 87 69999999999976 234555545555554
No 213
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.0035 Score=78.36 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=69.7
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.||..-|.+-|+++.. .++.+|+-||+|+.|++-.+.+--|..+. ..+..+..+|+++|+.+++|+-...|++++.
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp--~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP--SVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc--chhccceeccccceeeeeecccccceeeecC
Confidence 7899999999988874 78999999999999976322111111111 1223344679999999999999999999999
Q ss_pred CCcEEEEECCCCce
Q 000170 517 DGHVTVWDVQRASA 530 (1950)
Q Consensus 517 dG~I~lWDl~~g~~ 530 (1950)
||++++|+......
T Consensus 417 DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP 430 (577)
T ss_pred CceEEeeccCCcCc
Confidence 99999999987665
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0088 Score=79.05 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=66.0
Q ss_pred cEEEEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCC--eEEEEEcCCCCE-EEEecCCCcE
Q 000170 447 PQVLAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAP--VTAMCFNQPGDL-LLAGYADGHV 520 (1950)
Q Consensus 447 pt~ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~--VtsLafS~DG~~-LasG~~dG~I 520 (1950)
||++..+ |+.||.|..||.|++||.+.. ..+.. ++ .-..|+.. |--+.+.+.|-- |++|+.+|.|
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a-----~~ds~-v~---~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMA-----PPDSL-VC---VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccC-----Ccccc-ce---eecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 5555554 588999999999999999752 12211 22 22346665 999999998776 9999999999
Q ss_pred EEEECCCCceeeeec-cCc---CCCeEEEEEecC
Q 000170 521 TVWDVQRASAAKVIT-GEH---TSPVVHTLFLGQ 550 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~-~~H---~~~I~~v~F~~d 550 (1950)
.+||+........++ ..| .++.+++.-...
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccC
Confidence 999998743222221 134 346888887754
No 215
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.0022 Score=78.76 Aligned_cols=144 Identities=20% Similarity=0.277 Sum_probs=96.3
Q ss_pred EEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCccc-ceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 448 QVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMD-SKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 448 t~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~-~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
..||+++ .++|||.++..+++||.+. ++.+.+.. ++..|...-.....--||+++||++|+-|++.|.|-.|.|+
T Consensus 285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~-~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF 363 (559)
T KOG1334|consen 285 YTIAVDPRNTNEFAVGGSDQFARVYDQRR-IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF 363 (559)
T ss_pred eeEecCCCCccccccCChhhhhhhhcccc-hhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence 5677776 5799999999999999753 21111111 11222110011223459999999999999999999999999
Q ss_pred ECCCCc------------eeee-eccCcC--CCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEE
Q 000170 524 DVQRAS------------AAKV-ITGEHT--SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQ 588 (1950)
Q Consensus 524 Dl~~g~------------~l~t-l~~~H~--~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~ 588 (1950)
.-.-+. ..+. +. ||. ..|-.|-|.|- +.-.++||.++|.||+| .+-+++-.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYK-GHrN~~TVKgVNFfGP-----rsEyVvSGSDCGhIFiW--------~K~t~eii 429 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYK-GHRNSRTVKGVNFFGP-----RSEYVVSGSDCGHIFIW--------DKKTGEII 429 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhc-ccccccccceeeeccC-----ccceEEecCccceEEEE--------ecchhHHH
Confidence 544321 1222 44 884 46889999973 56678888888888764 44566666
Q ss_pred eecCCCccccEEEeecccc
Q 000170 589 CLLDGQKTGIVLSASPLLF 607 (1950)
Q Consensus 589 ~ll~g~~~g~Vla~spLp~ 607 (1950)
..+.| .+..|-++.|.|.
T Consensus 430 ~~Meg-Dr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 430 RFMEG-DRHVVNCLEPHPH 447 (559)
T ss_pred HHhhc-ccceEeccCCCCC
Confidence 67778 5555667888885
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.014 Score=69.94 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcc---ccee-eeecccCCCCCCCeEEEEEcCCCCEEEEe-c
Q 000170 444 HGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSM---DSKM-MMLGLLGDRSPAPVTAMCFNQPGDLLLAG-Y 515 (1950)
Q Consensus 444 ~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~---~~k~-~~l~~~~~~h~~~VtsLafS~DG~~LasG-~ 515 (1950)
.-.++|+|--+ +-+|||..-| |.+|...+-.+..-+. ...+ .++ ...+| -+||+|.+++||+.|+++ +
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl--~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVL--QDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhe--eCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 34478888865 6899998665 8899753321110000 0000 011 12233 799999999999988876 6
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
.|.+|.|||+.+|+++.-.. --.+.++-+.|+||+ ....+.+.|..=.+|
T Consensus 216 gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdg----d~lfaAt~davfrlw 265 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDG----DVLFAATCDAVFRLW 265 (445)
T ss_pred CcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCC----CEEEEecccceeeee
Confidence 78899999999998765443 234789999999983 334445555543333
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.69 E-value=0.019 Score=65.70 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=51.2
Q ss_pred CCCCeEEEEEcCCCCEEEE--ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe--cCCceEE
Q 000170 495 SPAPVTAMCFNQPGDLLLA--GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG--DTKGLVQ 570 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~Las--G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss--D~~G~V~ 570 (1950)
..++|.+++|||+|+.+|+ |..++.|.|||++ ++.+..+ +...+..|.|+|+ ++.+++++ +..|.+.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPD-----GRFLVLAGFGNLNGDLE 128 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCC-----CCEEEEEEccCCCcEEE
Confidence 3578999999999999655 5577899999996 6665555 3568889999997 45666655 4455444
Q ss_pred EEc
Q 000170 571 LHS 573 (1950)
Q Consensus 571 ~h~ 573 (1950)
++.
T Consensus 129 ~wd 131 (194)
T PF08662_consen 129 FWD 131 (194)
T ss_pred EEE
Confidence 433
No 218
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.68 E-value=0.0012 Score=78.54 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=60.3
Q ss_pred CCCCCCCeEEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 492 GDRSPAPVTAMCFNQPG-DLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 492 ~~~h~~~VtsLafS~DG-~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
+.+|...|.|||=.|.- ..+|+|+.||.|+|||+....|.+++. +|.+.|..|++.- ...+.+||++
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~-------~~~~tvgdDK---- 129 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ-------TSFFTVGDDK---- 129 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc-------cceEEecCCc----
Confidence 35577778888888876 789999999999999999999999997 9999999999984 2456666776
Q ss_pred EEccccccccc
Q 000170 571 LHSLSVVPLLN 581 (1950)
Q Consensus 571 ~h~ft~~rl~~ 581 (1950)
+ ++.|.
T Consensus 130 ----t-vK~wk 135 (433)
T KOG0268|consen 130 ----T-VKQWK 135 (433)
T ss_pred ----c-eeeee
Confidence 3 66775
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.66 E-value=0.021 Score=68.68 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=74.4
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecc--cCCCCCCCeEEEEEcCCCCEEEEe--cCCCcEEE
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL--LGDRSPAPVTAMCFNQPGDLLLAG--YADGHVTV 522 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~--~~~~h~~~VtsLafS~DG~~LasG--~~dG~I~l 522 (1950)
+.++..+.+.++|--.. .|.|||++. + + .+.. +.+.+...+-++++|+.+.|||-- -..|.|.|
T Consensus 90 IL~VrmNr~RLvV~Lee-~IyIydI~~-------M--k--lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEE-SIYIYDIKD-------M--K--LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred eEEEEEccceEEEEEcc-cEEEEeccc-------c--e--eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 45666777777777655 499999952 2 2 1211 112344558999999999999854 45799999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
||+.+-+...++. +|.++|-.++|+++ + +++.++.++|
T Consensus 158 ~d~~nl~~v~~I~-aH~~~lAalafs~~-----G-~llATASeKG 195 (391)
T KOG2110|consen 158 FDTINLQPVNTIN-AHKGPLAALAFSPD-----G-TLLATASEKG 195 (391)
T ss_pred EEcccceeeeEEE-ecCCceeEEEECCC-----C-CEEEEeccCc
Confidence 9999999999997 99999999999987 3 4555555555
No 220
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.62 E-value=0.014 Score=73.70 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=93.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
..||.||..|.|++|+...+ + +.+....+.|.+.|+++-.+.+-.++-++++|+.|..|+.+.+...+..
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g---------~-it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG---------E-ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred eEEEeecCCccEEEEEecCC---------e-EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 56999999999999998432 1 2222345679999999999999999999999999999999999887776
Q ss_pred ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeec
Q 000170 535 TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 535 ~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
+ +-+..+.+++.++|+ .++++++ .. +++|+--+.+--..|.| |.|.|-.++.
T Consensus 141 ~-~~~~~~~sl~is~D~-----~~l~~as-~~----------ik~~~~~~kevv~~ftg-h~s~v~t~~f 192 (541)
T KOG4547|consen 141 K-EQKPLVSSLCISPDG-----KILLTAS-RQ----------IKVLDIETKEVVITFTG-HGSPVRTLSF 192 (541)
T ss_pred c-cCCCccceEEEcCCC-----CEEEecc-ce----------EEEEEccCceEEEEecC-CCcceEEEEE
Confidence 5 777889999999873 3344332 22 45666555666677889 9988844443
No 221
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0042 Score=78.74 Aligned_cols=82 Identities=18% Similarity=0.349 Sum_probs=60.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeE-EEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVT-AMCFNQPGDLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~Vt-sLafS~DG~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
..||++|.+|.|++.-+.. + + .|. -+-+.-+|| ++||.|||+.||+|+.||+|+|-|+.+|..+..
T Consensus 33 dLiA~~t~~gelli~R~n~-------q--R--lwt--ip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 33 DLIATRTEKGELLIHRLNW-------Q--R--LWT--IPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred chhheeccCCcEEEEEecc-------c--e--eEe--ccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 6799999999999986521 2 1 222 222445566 999999999999999999999999999988655
Q ss_pred eccCcCCCeEEEEEec
Q 000170 534 ITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~ 549 (1950)
..-.-..+|..+.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3212246777777763
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=96.57 E-value=0.00088 Score=86.04 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=77.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+|..+|.|.+|..-|.++.+||.|-.|+||.+.++.|+.+.. ||.+.|+.++-... ++.+.++..+
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~------n~~iaaaS~D------- 253 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSN------NTMIAAASND------- 253 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchh------hhhhhhcccC-------
Confidence 589999999999999999999999999999999999999987 99999999988743 3333333222
Q ss_pred ccccccccceeeeEEeecCCCccccE--EEeeccc
Q 000170 574 LSVVPLLNRFSIKTQCLLDGQKTGIV--LSASPLL 606 (1950)
Q Consensus 574 ft~~rl~~~~t~~s~~ll~g~~~g~V--la~spLp 606 (1950)
.++|+|....+.--.+|.| |+|.| ++|+|.+
T Consensus 254 -~vIrvWrl~~~~pvsvLrg-htgavtaiafsP~~ 286 (1113)
T KOG0644|consen 254 -KVIRVWRLPDGAPVSVLRG-HTGAVTAIAFSPRA 286 (1113)
T ss_pred -ceEEEEecCCCchHHHHhc-cccceeeeccCccc
Confidence 1467787666666678888 99999 6777765
No 223
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.49 E-value=0.016 Score=68.50 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=83.0
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEeC-CCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEEEEC
Q 000170 448 QVLAVHPSFIAVGMSKGAIVVVPG-KYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 448 t~ia~s~~~IAvGts~G~I~vfd~-k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl 525 (1950)
.|+.+.|.+|..|. +..|++||. +.+- +-. ....+.. .-.+..|-|+|++|||- .+++|+|+-..++-|+.-
T Consensus 164 L~Fs~DGeqlfaGy-krcirvFdt~RpGr---~c~-vy~t~~~-~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 164 LQFSPDGEQLFAGY-KRCIRVFDTSRPGR---DCP-VYTTVTK-GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred EEecCCCCeEeecc-cceEEEeeccCCCC---CCc-chhhhhc-ccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 34445568888885 568999998 3221 000 0001100 00124678999999985 559999999999999999
Q ss_pred CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe--cCCceEEEEcccccccc
Q 000170 526 QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG--DTKGLVQLHSLSVVPLL 580 (1950)
Q Consensus 526 ~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss--D~~G~V~~h~ft~~rl~ 580 (1950)
.++..+.++- ||.+.|||+.|.+++ +-+.+++ |+...+|-..-++-.+|
T Consensus 238 ~~~~pl~llg-gh~gGvThL~~~edG-----n~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 238 DGRRPLQLLG-GHGGGVTHLQWCEDG-----NKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred CCCCceeeec-ccCCCeeeEEeccCc-----CeecccccCCCeEEEEeehhccchhh
Confidence 9999888884 999999999999983 4455554 77777776665544444
No 224
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.45 E-value=0.00077 Score=58.24 Aligned_cols=44 Identities=27% Similarity=0.514 Sum_probs=32.1
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
+.|.+|...+... ..++.+.|||.||..|+. +-+.. ...||+|.
T Consensus 1 d~C~IC~~~~~~~---~~~~~l~C~H~fh~~Ci~-~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDG---EKVVKLPCGHVFHRSCIK-EWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTT---SCEEEETTSEEEEHHHHH-HHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCC---CeEEEccCCCeeCHHHHH-HHHHh----CCcCCccC
Confidence 3699999998763 358899999999999995 22222 35899994
No 225
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.015 Score=73.88 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=94.6
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCccc---ceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMD---SKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~---~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+.+...|++-+. .|||+|+.+|.++|-.+.+..+...... ...+....+.++|.+.|.-+.|+...+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 456668888874 7999999999999998754322111100 00111112457899999999999999999999999
Q ss_pred CcEEEEECCCCce-eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccc
Q 000170 518 GHVTVWDVQRASA-AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNR 582 (1950)
Q Consensus 518 G~I~lWDl~~g~~-l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~ 582 (1950)
|.|.+|=+=+|+- -..+.+...+-|.++.|..|| ....++-.|-.-+|=...+ .|+||+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG----~kIcIvYeDGavIVGsvdG--NRIwgK 152 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG----TKICIVYEDGAVIVGSVDG--NRIWGK 152 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC----cEEEEEEccCCEEEEeecc--ceecch
Confidence 9999999999873 223333556889999999873 3455665555555555555 688986
No 226
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.39 E-value=0.0019 Score=62.21 Aligned_cols=52 Identities=27% Similarity=0.479 Sum_probs=35.2
Q ss_pred cccCCCcccccccccccC-------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1751 YAPRSLLCCICNCLLTKN-------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~-------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
|......|.||..+|... .....++.-.|||.||..|+. +=+.. ...||+|.
T Consensus 15 ~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~-~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 15 WDIADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCIS-QWLKQ----NNTCPLCR 73 (73)
T ss_dssp ESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHH-HHHTT----SSB-TTSS
T ss_pred ecCcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHH-HHHhc----CCcCCCCC
Confidence 444567899999999543 123457777899999999995 22222 35899995
No 227
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.36 E-value=1.1 Score=56.67 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=88.9
Q ss_pred hhhccCCCccccccCccccccccccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC-CEEEEEeCCCcEEEE
Q 000170 391 KQASTGLHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP-SFIAVGMSKGAIVVV 469 (1950)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~-~~IAvGts~G~I~vf 469 (1950)
-.+++|--..+|++.-..-=+|+=+==++.|++ .| ...++.-++.|.+-.+ +-=++=+.-|++.|=
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML------------RS-tl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK 171 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML------------RS-TVVQNEESIRCARWAPNSNSIVFCQGGHISIK 171 (737)
T ss_pred hhhhhcccCCCCceeeeecCCceEEEEeccchH------------HH-HHhhcCceeEEEEECCCCCceEEecCCeEEEe
Confidence 346677777888866555545533222222222 11 1223444567877765 222334456777777
Q ss_pred eCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEec
Q 000170 470 PGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 470 d~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
.++. +.+.+.| ..|.|-|-|++||+....+++|++|=..++||-. |..+.+-. .|..+|++|+|.|
T Consensus 172 pL~~--------n~k~i~W----kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~-~~ey~ITSva~np 237 (737)
T KOG1524|consen 172 PLAA--------NSKIIRW----RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA-AEEYAITSVAFNP 237 (737)
T ss_pred eccc--------ccceeEE----eccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC-hhccceeeeeecc
Confidence 7642 3344544 4589999999999999999999999999999976 55555443 8999999999998
Q ss_pred C
Q 000170 550 Q 550 (1950)
Q Consensus 550 d 550 (1950)
+
T Consensus 238 d 238 (737)
T KOG1524|consen 238 E 238 (737)
T ss_pred c
Confidence 6
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.26 E-value=1.1 Score=57.68 Aligned_cols=134 Identities=12% Similarity=0.095 Sum_probs=79.2
Q ss_pred ccccccCcceeee-EEe--cCChhHHHHhhhccccccCCCc----EEEEEcCCEEEEEeC----CCcEEEEeCCCCCCcc
Q 000170 410 LEGVRRGSTTLGY-FDV--DANNTITQTIASQAFRRDHGSP----QVLAVHPSFIAVGMS----KGAIVVVPGKYSAHHR 478 (1950)
Q Consensus 410 ~~~~~~~~~~~~~-~~~--~~~~~iS~~i~s~~f~~~~G~p----t~ia~s~~~IAvGts----~G~I~vfd~k~~~~~~ 478 (1950)
|=.+.+|....+. +.+ +.++.+.+.|...-+..-.|.. +.|++- ...+. ...|.++|...
T Consensus 121 l~dv~~~~~~~~~~~~~~~~~~r~~ah~~~d~i~~~ltg~~g~f~~~iafv----~~~~~~~~~~~~l~~~d~dg----- 191 (435)
T PRK05137 121 LWDVFAGQQLTGQQFVTPPENWRRAAHKIADAIYERLTGEKGYFDTRIVYV----AESGPKNKRIKRLAIMDQDG----- 191 (435)
T ss_pred EEEcCCCcEeeeeEEEcCHHHHHHHHHHHHHHHHHHHhCCCCcCCCeEEEE----EeeCCCCCcceEEEEECCCC-----
Confidence 3344445544442 222 3355666777665554444433 223321 11111 23688888632
Q ss_pred CcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccC
Q 000170 479 DSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA---DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVT 555 (1950)
Q Consensus 479 d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~---dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~ 555 (1950)
...+.+ ..+.++|.+.+|||||++||..+. ++.|.+||+.+|+.. .+. .+...+....|++|
T Consensus 192 --~~~~~l------t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-~~~g~~~~~~~SPD----- 256 (435)
T PRK05137 192 --ANVRYL------TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-NFPGMTFAPRFSPD----- 256 (435)
T ss_pred --CCcEEE------ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-cCCCcccCcEECCC-----
Confidence 222222 235678999999999999988653 468999999998764 343 45667888999998
Q ss_pred CceEEEEecCCc
Q 000170 556 RQFKAVTGDTKG 567 (1950)
Q Consensus 556 ~~~~~vssD~~G 567 (1950)
+..++++.+.+|
T Consensus 257 G~~la~~~~~~g 268 (435)
T PRK05137 257 GRKVVMSLSQGG 268 (435)
T ss_pred CCEEEEEEecCC
Confidence 344555555444
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.0064 Score=74.93 Aligned_cols=105 Identities=23% Similarity=0.297 Sum_probs=74.7
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 492 GDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 492 ~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
+..|.|.|..|-|+..|+.|++|+.|-.|.+||..+++....+..||..-|...+|.|.. +..+ ++++-..|.|-.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s---~d~t-i~~~s~dgqvr~ 213 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS---GDRT-IVTSSRDGQVRV 213 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC---CCcC-ceeccccCceee
Confidence 466999999999999999999999999999999999998888888999999999999862 2333 444444455544
Q ss_pred EcccccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 572 HSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 572 h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
-..- -..| ++-.+.+.. |.|.|--+...|
T Consensus 214 s~i~----~t~~-~e~t~rl~~-h~g~vhklav~p 242 (559)
T KOG1334|consen 214 SEIL----ETGY-VENTKRLAP-HEGPVHKLAVEP 242 (559)
T ss_pred eeec----cccc-eecceeccc-ccCccceeeecC
Confidence 3321 1112 332333444 888874333333
No 230
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.12 E-value=0.038 Score=65.59 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=80.5
Q ss_pred ccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 438 QAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 438 ~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
..|..-.+.+||-|-+. ..||++.++.-|.||.... .+ ......+...|...||.|+|+|-+..+++|+
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~-------~~--~w~~~htls~Hd~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLG-------AD--LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecC-------CC--CceeceehhhhCcceeEEeecCCCCceeEcc
Confidence 34556677889999986 6799999999999997632 11 1222345667999999999999999999999
Q ss_pred CCCcEEEEECCC-Cc--eeeeeccCcCCCeEEEEEecC
Q 000170 516 ADGHVTVWDVQR-AS--AAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 516 ~dG~I~lWDl~~-g~--~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.|..-.+|.... |+ ..-++. .|+.++++|.|+|.
T Consensus 75 ~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~ 111 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPK 111 (361)
T ss_pred CCCCccccccCCCCeeccceeEE-EeccceeeEeecCc
Confidence 999999999943 33 223333 78999999999997
No 231
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.08 E-value=0.096 Score=66.28 Aligned_cols=154 Identities=20% Similarity=0.238 Sum_probs=82.9
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCcc--C---cc------------cceeeeecc---c-----------CC
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHR--D---SM------------DSKMMMLGL---L-----------GD 493 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~--d---~~------------~~k~~~l~~---~-----------~~ 493 (1950)
++++.+.+ .-+|||+..|-|+||-+..+.... + .. ..+.+-... + .+
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 45555554 679999999999999875432111 0 00 000000000 0 01
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee--cc-----CcCCCeEEEEEe----cCCCccCCceEEEE
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI--TG-----EHTSPVVHTLFL----GQDSQVTRQFKAVT 562 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl--~~-----~H~~~I~~v~F~----~d~~~~~~~~~~vs 562 (1950)
..+|+||+++.| |=-++|+||++|.+.|.|+..+.++..- .+ .....|+++.|. ++|. .....++.
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~--ySSi~L~v 160 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG--YSSICLLV 160 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS--SEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc--ccceEEEE
Confidence 247999999997 6668999999999999999777776542 21 224678899887 3322 12245555
Q ss_pred ecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecc
Q 000170 563 GDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPL 605 (1950)
Q Consensus 563 sD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spL 605 (1950)
+-+.|.+....+.. .--++|++...-.... +.+.|+++.|+
T Consensus 161 GTn~G~v~~fkIlp-~~~g~f~v~~~~~~~~-~~~~i~~I~~i 201 (395)
T PF08596_consen 161 GTNSGNVLTFKILP-SSNGRFSVQFAGATTN-HDSPILSIIPI 201 (395)
T ss_dssp EETTSEEEEEEEEE--GGG-EEEEEEEEE---SS----EEEEE
T ss_pred EeCCCCEEEEEEec-CCCCceEEEEeecccc-CCCceEEEEEE
Confidence 55669988876531 1224556554333333 66789988887
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.016 Score=72.03 Aligned_cols=121 Identities=13% Similarity=0.174 Sum_probs=89.4
Q ss_pred ccccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEE
Q 000170 438 QAFRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLA 513 (1950)
Q Consensus 438 ~~f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~Las 513 (1950)
++...+.|-|.|++-+ |.++|+|+.|-.|.|||.-. -|.+. ...++|.+.|-|+.|=|- ...+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~---------~Kllh--sI~TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE---------YKLLH--SISTGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchh---------cceee--eeecccccceeEEeeeccCCCeEEEe
Confidence 4556788999999887 58999999999999999731 12121 234679999999999774 669999
Q ss_pred ecCCCcEEEEECCCCc---------eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 514 GYADGHVTVWDVQRAS---------AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~---------~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|..|..|+|+|+.+-+ ..-....-|+.+|-.|+-.+++ ...+-++.++|.+.-|.+
T Consensus 113 gAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----PhtfwsasEDGtirQyDi 177 (758)
T KOG1310|consen 113 GAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTFWSASEDGTIRQYDI 177 (758)
T ss_pred ccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceEEEecCCcceeeecc
Confidence 9999999999998632 1112234688889999888763 245556667777777665
No 233
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.08 E-value=0.0032 Score=61.60 Aligned_cols=55 Identities=24% Similarity=0.479 Sum_probs=39.6
Q ss_pred cCCCcccccccccccC-------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1753 PRSLLCCICNCLLTKN-------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~-------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
+....|.||+.++.+. +....++...|+|.||..|+.. =+.+. .+...||+|.+.
T Consensus 19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~k-Wl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILK-WLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHH-HHccc-cCCCCCCCcCCe
Confidence 3578999999999753 2345788899999999999852 12211 234689999863
No 234
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.025 Score=75.12 Aligned_cols=103 Identities=26% Similarity=0.333 Sum_probs=72.2
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEEEECCCCce--ee
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDVQRASA--AK 532 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g~~--l~ 532 (1950)
++.+++.--.|+|||... + +.+ .....+....||+|+-+.. |..+|+|++||.|++||...... .-
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~--------E--~~~-~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHK--------E--QVV-ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred eEEecCCeeEEEEEeccc--------c--eeE-eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 455554567899999731 1 112 2122235667999876554 69999999999999999986532 33
Q ss_pred eeccCcCCC--eEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 533 VITGEHTSP--VVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 533 tl~~~H~~~--I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
..+..|+.. |+++.|-.+| --.+||+...|.|..+..
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G-----~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQG-----LGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred eeecccCCcccceeEEeecCC-----CcceeeeccCCeEEEEec
Confidence 333489876 9999999863 237899999998887775
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.04 E-value=0.05 Score=68.32 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=73.1
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-cCCCcEEEEECCCCcee
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG-YADGHVTVWDVQRASAA 531 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG-~~dG~I~lWDl~~g~~l 531 (1950)
++.|+.+.+.+|.|-++|.... +..+.+. . ...-..+++|+||++++++ +..++|.++|.++.+.+
T Consensus 47 Dgr~~yv~~rdg~vsviD~~~~------~~v~~i~---~----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 47 DGRYLYVANRDGTVSVIDLATG------KVVATIK---V----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp -SSEEEEEETTSEEEEEETTSS------SEEEEEE--------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred CCCEEEEEcCCCeEEEEECCcc------cEEEEEe---c----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 3588999889999999999542 1122221 1 2346889999999999866 78999999999999999
Q ss_pred eeeccC------cCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 532 KVITGE------HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 532 ~tl~~~------H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+++..+ ..++|..|..++. +...+++..+.|.||...+.
T Consensus 114 ~~I~~~~~~~~~~~~Rv~aIv~s~~-----~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 114 KTIPTGGMPVDGPESRVAAIVASPG-----RPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEE--EE-TTTS---EEEEEE-SS-----SSEEEEEETTTTEEEEEETT
T ss_pred eecccccccccccCCCceeEEecCC-----CCEEEEEEccCCeEEEEEec
Confidence 888533 2457888888875 56678888899999988864
No 236
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=95.86 E-value=0.034 Score=70.68 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=85.2
Q ss_pred CcceeeeEEecCChhHHHHhhhcc------ccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeee
Q 000170 416 GSTTLGYFDVDANNTITQTIASQA------FRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMM 487 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~------f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~ 487 (1950)
++..+.++.+--...+.++=--+. -++.+|. +|+..+ |.|+...+.|+.|..||+.. + .......+
T Consensus 238 ~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~-~nL~lDssGt~L~AsCtD~sIy~ynm~s-~----s~sP~~~~ 311 (720)
T KOG0321|consen 238 ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ-VNLILDSSGTYLFASCTDNSIYFYNMRS-L----SISPVAEF 311 (720)
T ss_pred CCcceEEEeecccccccccCCCcccCccCcccceeee-EEEEecCCCCeEEEEecCCcEEEEeccc-c----CcCchhhc
Confidence 455566666644444444422111 1333444 455554 57877777799999999853 0 11111111
Q ss_pred ecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 488 LGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 488 l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
-+ . ...+--|.+ ..|+||.+|++|+.|++..+|.+.+.+.--++..||...|+.|+|.+... --++.++||.+
T Consensus 312 sg-~-~~~sf~vks-~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~----t~v~TcSdD~~ 384 (720)
T KOG0321|consen 312 SG-K-LNSSFYVKS-ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT----TPVATCSDDFR 384 (720)
T ss_pred cC-c-ccceeeeee-ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC----CCceeeccCcc
Confidence 00 0 001122333 35999999999999999999999998865555569999999999998632 23455566653
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.83 E-value=0.1 Score=67.06 Aligned_cols=102 Identities=10% Similarity=0.092 Sum_probs=68.3
Q ss_pred CcEEEEE--cCCEEEEEeC---CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEE-EecCCCc
Q 000170 446 SPQVLAV--HPSFIAVGMS---KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLL-AGYADGH 519 (1950)
Q Consensus 446 ~pt~ia~--s~~~IAvGts---~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~La-sG~~dG~ 519 (1950)
.+.+.+. +++.||..+. ++.|.+||...+ ..+ .+ ..+.+.+.+.+|||||+.|| +...+|.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-------~~~--~l----~~~~g~~~~~~~SPDG~~la~~~~~~g~ 269 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-------QRE--LV----GNFPGMTFAPRFSPDGRKVVMSLSQGGN 269 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-------cEE--Ee----ecCCCcccCcEECCCCCEEEEEEecCCC
Confidence 3444444 4577887653 467999998532 111 11 22456788899999999886 4555554
Q ss_pred --EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 520 --VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 520 --I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
|.+||+.+++.. .+. .|...+++..|++| +..++.++|..|
T Consensus 270 ~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~spD-----G~~i~f~s~~~g 312 (435)
T PRK05137 270 TDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSPD-----GSQIVFESDRSG 312 (435)
T ss_pred ceEEEEECCCCceE-Ecc-CCCCccCceeEcCC-----CCEEEEEECCCC
Confidence 888899988764 454 46566778999998 456667777766
No 238
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.78 E-value=0.09 Score=67.43 Aligned_cols=98 Identities=17% Similarity=0.077 Sum_probs=65.7
Q ss_pred EEcCCEEEEEeC---CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE-ecCCC--cEEEEE
Q 000170 451 AVHPSFIAVGMS---KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA-GYADG--HVTVWD 524 (1950)
Q Consensus 451 a~s~~~IAvGts---~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las-G~~dG--~I~lWD 524 (1950)
.+++++||..+. +..|.+||+..+ +...+. ...+.+.+.+|||||++|+. .+.+| .|.+||
T Consensus 212 SpDg~~la~~s~~~~~~~l~~~dl~~g---------~~~~l~----~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 212 SPDGKKLAYVSFERGRSAIYVQDLATG---------QRELVA----SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred CCCCCEEEEEecCCCCcEEEEEECCCC---------CEEEec----cCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 445678887763 346999998532 111211 12345668899999998864 44555 599999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
+.++++. .+. .|....+...|++| +..++.++|..|.
T Consensus 279 ~~~g~~~-~lt-~~~~~~~~~~~spD-----G~~l~f~sd~~g~ 315 (433)
T PRK04922 279 LGSRQLT-RLT-NHFGIDTEPTWAPD-----GKSIYFTSDRGGR 315 (433)
T ss_pred CCCCCeE-ECc-cCCCCccceEECCC-----CCEEEEEECCCCC
Confidence 9998764 344 55555678899997 4567777887764
No 239
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.70 E-value=0.1 Score=64.16 Aligned_cols=117 Identities=12% Similarity=0.197 Sum_probs=70.6
Q ss_pred CCCcEEEEEcC--CEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEecCCCc
Q 000170 444 HGSPQVLAVHP--SFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAGYADGH 519 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG~~dG~ 519 (1950)
.|.|..+++++ ++++++. .+|.|.+||+.. +......+. ... +.....+++|+|||+++ ++...++.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~-----~g~~~~~~~---~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDK-----DGIPVAPIQ---IIE-GLEGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECC-----CCCCCCcee---ecc-CCCcccEeEeCCCCCEEEEeeCCCCE
Confidence 35788888875 6666654 489999999842 111001111 111 22346778999999988 56677799
Q ss_pred EEEEECCCCceee-----eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQRASAAK-----VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~g~~l~-----tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|.+||+.+...+. .+.........+++|+++ +..+.++....+.|..+.+
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd-----g~~lyv~~~~~~~v~v~~~ 204 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN-----QQYAYCVNELNSSVDVWQL 204 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCCCCceEEECCC-----CCEEEEEecCCCEEEEEEE
Confidence 9999998743221 111111244678999987 4455555544565555543
No 240
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.69 E-value=0.041 Score=64.47 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=95.1
Q ss_pred ccCCCc-EEEE---EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecC
Q 000170 442 RDHGSP-QVLA---VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYA 516 (1950)
Q Consensus 442 ~~~G~p-t~ia---~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~ 516 (1950)
..+++| |++- +.+++|.+.+-|-+-.|||+..+. .-..| .++-.|...|--|+|+.+|. .+|+-++
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~----~~~vk-----TQLIAHDKEV~DIaf~~~s~~~FASvga 217 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV----SGTVK-----TQLIAHDKEVYDIAFLKGSRDVFASVGA 217 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeecc----cccee-----eEEEecCcceeEEEeccCccceEEEecC
Confidence 344444 5544 346899999999999999995421 00112 23345899999999999775 7899999
Q ss_pred CCcEEEEECCCCceeeee-ccCc-CCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 517 DGHVTVWDVQRASAAKVI-TGEH-TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl-~~~H-~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
||.||++|+..-..-..+ .+.. ..+...++|..+++ +..+.+..|+.- |..... | ..+.--+-|.|
T Consensus 218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp---nymATf~~dS~~-V~iLDi---R----~P~tpva~L~~- 285 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP---NYMATFAMDSNK-VVILDI---R----VPCTPVARLRN- 285 (364)
T ss_pred CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc---hHHhhhhcCCce-EEEEEe---c----CCCcceehhhc-
Confidence 999999999987654333 2233 47899999998764 445556666653 333332 1 23444456777
Q ss_pred ccccE--EEeec
Q 000170 595 KTGIV--LSASP 604 (1950)
Q Consensus 595 ~~g~V--la~sp 604 (1950)
|.+.| ++++|
T Consensus 286 H~a~VNgIaWaP 297 (364)
T KOG0290|consen 286 HQASVNGIAWAP 297 (364)
T ss_pred CcccccceEecC
Confidence 99999 55555
No 241
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=95.69 E-value=0.049 Score=71.02 Aligned_cols=123 Identities=18% Similarity=0.081 Sum_probs=86.9
Q ss_pred cCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
.+..+|++++.+ ....|||..|.|.-=+.+ ++..+. .+..........|.|+|+++.+||=+..+.....|.+
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~-g~~~~~---~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~ 421 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK-GYTPAP---EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT 421 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCcEEEEEecc-CCcccc---cccccccccccccCcceEeeecCCCccceeeeeccce
Confidence 455678888874 779999999999985543 221110 0000000122348899999999998875544444999
Q ss_pred EEEEECC-CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 520 VTVWDVQ-RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 520 I~lWDl~-~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
|+||.-. ....+..+ .-|...|+.++|++ +|.++..+.|..|.+..+.+.
T Consensus 422 vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSp-----trpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 422 VRIWSEDVIASPLLSL-DSSPDYVTDVAWSP-----TRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eEeccccCCCCcchhh-hhccceeeeeEEcC-----cCceEEEEEcCCCceehhhhh
Confidence 9999988 55554333 36777899999998 488999999999988888763
No 242
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=95.53 E-value=0.067 Score=68.36 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=57.0
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
-..|+|+|.++ ..+++|+.||.|++||...+ ...+ ....-.++.++|.|||..+++|+..|.|.
T Consensus 259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~----------~t~~----~ka~~~P~~iaWHp~gai~~V~s~qGelQ 324 (545)
T PF11768_consen 259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRG----------VTLL----AKAEFIPTLIAWHPDGAIFVVGSEQGELQ 324 (545)
T ss_pred CCcceEEecCcccceEEEEecCCeEEEEEcCCC----------eeee----eeecccceEEEEcCCCcEEEEEcCCceEE
Confidence 34578888887 78999999999999997431 1111 11234589999999999999999999999
Q ss_pred EEECCCCce
Q 000170 522 VWDVQRASA 530 (1950)
Q Consensus 522 lWDl~~g~~ 530 (1950)
+||+.-...
T Consensus 325 ~FD~ALspi 333 (545)
T PF11768_consen 325 CFDMALSPI 333 (545)
T ss_pred EEEeecCcc
Confidence 999975543
No 243
>PRK01742 tolB translocation protein TolB; Provisional
Probab=95.47 E-value=0.079 Score=67.87 Aligned_cols=99 Identities=16% Similarity=0.110 Sum_probs=64.3
Q ss_pred EEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec-CCCcEEEE--
Q 000170 450 LAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY-ADGHVTVW-- 523 (1950)
Q Consensus 450 ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~-~dG~I~lW-- 523 (1950)
..+++++||..+.+ ..|.+||+..+ ..+ .+. .. .+...+++|||||++|+.+. .+|.+.||
T Consensus 211 wSPDG~~la~~s~~~~~~~i~i~dl~tg-------~~~--~l~-~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 211 WSPDGSKLAYVSFENKKSQLVVHDLRSG-------ARK--VVA-SF---RGHNGAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred EcCCCCEEEEEEecCCCcEEEEEeCCCC-------ceE--EEe-cC---CCccCceeECCCCCEEEEEEecCCcEEEEEE
Confidence 34445788876543 46999998532 111 111 12 23345789999999999875 68876555
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
|+.+++. +.++ .|...+++..|++| +..++.++|..|.
T Consensus 278 d~~~~~~-~~lt-~~~~~~~~~~wSpD-----G~~i~f~s~~~g~ 315 (429)
T PRK01742 278 GANGGTP-SQLT-SGAGNNTEPSWSPD-----GQSILFTSDRSGS 315 (429)
T ss_pred ECCCCCe-Eeec-cCCCCcCCEEECCC-----CCEEEEEECCCCC
Confidence 6666664 4555 56677889999998 4456667776653
No 244
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.46 E-value=0.02 Score=44.42 Aligned_cols=31 Identities=32% Similarity=0.724 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.|.+.|++++|++++.++++|+.||.|++||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4678999999999999999999999999997
No 245
>PRK01742 tolB translocation protein TolB; Provisional
Probab=95.41 E-value=0.074 Score=68.13 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=57.0
Q ss_pred CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC---CcEEEEECCCCcee--eeeccC
Q 000170 463 KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD---GHVTVWDVQRASAA--KVITGE 537 (1950)
Q Consensus 463 ~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d---G~I~lWDl~~g~~l--~tl~~~ 537 (1950)
++.|.+||... ...+ . ...+.++|.+.+|||||++||.++.+ ..|.+||+.+|+.. ..+. +
T Consensus 183 ~~~i~i~d~dg-------~~~~--~----lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g 248 (429)
T PRK01742 183 PYEVRVADYDG-------FNQF--I----VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-G 248 (429)
T ss_pred eEEEEEECCCC-------CCce--E----eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-C
Confidence 46899999732 1112 1 12356789999999999999987543 36999999988643 2222 4
Q ss_pred cCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 538 HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 538 H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
|. ..++|+|| +..++++++.+|.
T Consensus 249 ~~---~~~~wSPD-----G~~La~~~~~~g~ 271 (429)
T PRK01742 249 HN---GAPAFSPD-----GSRLAFASSKDGV 271 (429)
T ss_pred cc---CceeECCC-----CCEEEEEEecCCc
Confidence 43 36799998 4566666665554
No 246
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.38 E-value=0.085 Score=67.81 Aligned_cols=126 Identities=12% Similarity=0.075 Sum_probs=89.7
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
..+.-.+|-|++++ .||++.+-|.++-+|..+.+ ..... ... ....|+-=|++-+|+||+.++|+++.|.
T Consensus 569 ~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~-----~~~e~--~fa-~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED-----IKDEF--RFA-CLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred cccceEEEEEEECCCCcEEEEeecCceEEeeeeecc-----cchhh--hhc-cccccceEEEEcccCcccceeEEecCCc
Confidence 33455678888886 79999999999999987431 11100 111 2456888899999999999999999999
Q ss_pred cEEEEECCCC--ceeee-eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 519 HVTVWDVQRA--SAAKV-ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 519 ~I~lWDl~~g--~~l~t-l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+|++|..... +.+.. -...|+.+|+.|+|.+-+-.+.+ .++..|=+.|.++++++.
T Consensus 641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~-~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG-DVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc-ceEEEEecccEEEEEecc
Confidence 9999999988 44322 22367899999999975322112 255556677888777653
No 247
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.039 Score=66.98 Aligned_cols=99 Identities=17% Similarity=0.160 Sum_probs=74.0
Q ss_pred cccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 439 AFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
+|..+.-+.+.+.+++++|.+|+..|.+-.||.+.+ + .++....+-.|+|++|--.|.+.+||+++.|.
T Consensus 244 d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---------k--l~g~~~kg~tGsirsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 244 DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---------K--LLGCGLKGITGSIRSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred ccccCcceeeeecCCCcEEEEecccchhheecccCc---------e--eeccccCCccCCcceEEEcCCCceEEeeccce
Confidence 344444444556667799999999999999998642 2 22223456789999999999999999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
-+||+|+++.+.+..+ --.+.++.|.|.++
T Consensus 313 yvRIhD~ktrkll~kv--YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 313 YVRIHDIKTRKLLHKV--YVKSRLTFILLRDD 342 (412)
T ss_pred eEEEeecccchhhhhh--hhhccccEEEecCC
Confidence 9999999997765433 12467777777653
No 248
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.34 E-value=0.079 Score=62.94 Aligned_cols=114 Identities=20% Similarity=0.307 Sum_probs=81.4
Q ss_pred cCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC-CC
Q 000170 443 DHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA-DG 518 (1950)
Q Consensus 443 ~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~-dG 518 (1950)
..|-+.|+|++| ..+|+|+.-..+=||.. +++... .. ..+|.|-||-|+|-+||..|-+|.. |-
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~-------~~~~pl-~l----lggh~gGvThL~~~edGn~lfsGaRk~d 273 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYND-------DGRRPL-QL----LGGHGGGVTHLQWCEDGNKLFSGARKDD 273 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEec-------CCCCce-ee----ecccCCCeeeEEeccCcCeecccccCCC
Confidence 356678999987 58999998888888764 223221 12 2368999999999999999999976 56
Q ss_pred cEEEEECCCC-ceeeeeccCcCC-CeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRA-SAAKVITGEHTS-PVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g-~~l~tl~~~H~~-~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.|-.||+..- ..+..+. +|.. .=-.|.|--+ .....++++|.+|.|-.+.
T Consensus 274 kIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld----~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALE-RHVGDTNQRILFDLD----PKGEILASGDTDGSVRVWD 325 (406)
T ss_pred eEEEEeehhccchhhhhh-hhccCccceEEEecC----CCCceeeccCCCccEEEEe
Confidence 7999999864 4555554 6643 4445667654 2345788999998665554
No 249
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.15 E-value=0.14 Score=55.11 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=73.8
Q ss_pred HHHHHHhcCchhhHHHhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhcccch
Q 000170 962 IFSKFEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGA 1041 (1950)
Q Consensus 962 if~~f~~~~~~~iFle~LEp~IL~g~I~~lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~Lyda 1041 (1950)
+-..|++.+.....+.-||..|..+. ..|.+...+++.|+..+....++-+..+ ....|++.++++|.++++|.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~~~~ll~~l~~~--~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS---ENPALQTKLIELYAKYDPQKEIERLDNK--SNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHCHHHHHHHHHhc--cccCCHHHHHHHHHHcCcHHH
Confidence 34445555566667777777777762 6788999999999877655555554423 468999999999999999999
Q ss_pred hhHHhhcccCCchhHHHHHHHHH
Q 000170 1042 LVYLFNKGLDDFRAPLEELLVVL 1064 (1950)
Q Consensus 1042 LIYI~n~~l~DYvTPL~eLl~~i 1064 (1950)
.+|||.+ +++|...+.-++..+
T Consensus 88 ~~~l~~k-~~~~~~Al~~~l~~~ 109 (140)
T smart00299 88 AVELYKK-DGNFKDAIVTLIEHL 109 (140)
T ss_pred HHHHHHh-hcCHHHHHHHHHHcc
Confidence 9999999 689988777776543
No 250
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.12 E-value=0.28 Score=62.95 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=63.6
Q ss_pred EEEcCCEEEEEe---CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-cCCC--cEEEE
Q 000170 450 LAVHPSFIAVGM---SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG-YADG--HVTVW 523 (1950)
Q Consensus 450 ia~s~~~IAvGt---s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG-~~dG--~I~lW 523 (1950)
..++++.||..+ .+..|.+||+..+ +.+ .+. . ..+.+.+.+|||||++||.. ..+| .|.+|
T Consensus 206 wSPDG~~la~~s~~~g~~~i~i~dl~~G-------~~~--~l~-~---~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 206 WSPDGSKLAYVTFESGRSALVIQTLANG-------AVR--QVA-S---FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred EcCCCCEEEEEEecCCCcEEEEEECCCC-------CeE--Ecc-C---CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 444567777643 3456889988432 111 111 1 23345678999999999864 4455 59999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
|+.+++..+ +. .+...+....|++| +..++.++|..|
T Consensus 273 d~~tg~~~~-lt-~~~~~~~~~~wSPD-----G~~I~f~s~~~g 309 (429)
T PRK03629 273 DLASGQIRQ-VT-DGRSNNTEPTWFPD-----SQNLAYTSDQAG 309 (429)
T ss_pred ECCCCCEEE-cc-CCCCCcCceEECCC-----CCEEEEEeCCCC
Confidence 999887644 43 33456889999998 456777777665
No 251
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=95.11 E-value=0.035 Score=67.65 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=56.8
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 448 QVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 448 t~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
+.++++ +++|....-|++|+|-.+-. ......+|+ +|..-|+.|+.- |+..|++|+.|++|++||+
T Consensus 155 ~dVavS~D~~~IitaDRDEkIRvs~ypa------~f~Iesfcl-----GH~eFVS~isl~-~~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITADRDEKIRVSRYPA------TFVIESFCL-----GHKEFVSTISLT-DNYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred heeeecCCCCEEEEecCCceEEEEecCc------ccchhhhcc-----ccHhheeeeeec-cCceeeecCCCCcEEEEec
Confidence 445555 48999999999999975411 112223454 388899999984 5666999999999999999
Q ss_pred CCCceeeee
Q 000170 526 QRASAAKVI 534 (1950)
Q Consensus 526 ~~g~~l~tl 534 (1950)
.+|+++.++
T Consensus 223 ~sgk~L~t~ 231 (390)
T KOG3914|consen 223 TSGKLLDTC 231 (390)
T ss_pred ccCCccccc
Confidence 999998766
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.99 E-value=0.25 Score=62.56 Aligned_cols=99 Identities=17% Similarity=0.073 Sum_probs=65.1
Q ss_pred EEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE-ecCCC--cEEEE
Q 000170 450 LAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA-GYADG--HVTVW 523 (1950)
Q Consensus 450 ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las-G~~dG--~I~lW 523 (1950)
.++++++||.++.. ..|.+||...+ +...+ ..+.+.+.+++|||||+.|+. ...+| .|.+|
T Consensus 197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g---------~~~~~----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 197 WSPDGQKLAYVSFESGKPEIYVQDLATG---------QREKV----ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred CCCCCCEEEEEEcCCCCcEEEEEECCCC---------CEEEe----ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 45556888887654 47999998532 11111 124466778999999998874 44444 59999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
|+.+++.. .+. .|...+.+..|++| +..++.++|..|.
T Consensus 264 d~~~~~~~-~l~-~~~~~~~~~~~s~d-----g~~l~~~s~~~g~ 301 (417)
T TIGR02800 264 DLDGKQLT-RLT-NGPGIDTEPSWSPD-----GKSIAFTSDRGGS 301 (417)
T ss_pred ECCCCCEE-ECC-CCCCCCCCEEECCC-----CCEEEEEECCCCC
Confidence 99988653 343 44455667889987 4566677776653
No 253
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=94.97 E-value=0.061 Score=64.34 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=69.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCCCce--
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQRASA-- 530 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~g~~-- 530 (1950)
++.+.-|.-+|.|.++|++... + . ......++ -|.++||||-.=. ++++|.+.+.+|+|+|||+.--+|
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rn-q-G-~~~~a~rl-----yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~ 335 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRN-Q-G-NGWCAQRL-----YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK 335 (425)
T ss_pred CCeeEecccCCcEEEEEeeecc-c-C-CCcceEEE-----EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc
Confidence 4778889999999999997521 1 0 01111122 2789999998766 899999999999999999987666
Q ss_pred -eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 531 -AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 531 -l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
++... ||-.--..+-|.-+. +...++..+||.
T Consensus 336 ~V~qYe-GHvN~~a~l~~~v~~---eeg~I~s~GdDc 368 (425)
T KOG2695|consen 336 SVMQYE-GHVNLSAYLPAHVKE---EEGSIFSVGDDC 368 (425)
T ss_pred ceeeee-ccccccccccccccc---ccceEEEccCee
Confidence 66775 885444444444332 233555577775
No 254
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=94.94 E-value=0.18 Score=65.55 Aligned_cols=139 Identities=20% Similarity=0.217 Sum_probs=89.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC------------CCEEEEecCCCcEEE
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP------------GDLLLAGYADGHVTV 522 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D------------G~~LasG~~dG~I~l 522 (1950)
..||-| ++..|.|.|.++ .+.+. ..+.|.+.|+++.|.|- .-.||+|.-.|.|.+
T Consensus 27 GLiAyg-shslV~VVDs~s---------~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 27 GLIAYG-SHSLVSVVDSRS---------LQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ceEEEe-cCceEEEEehhh---------hhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 578888 466788888753 11111 23558899999999763 237899999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceE-EEE---------ecCCceEEEEcccccccccceeee----EE
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFK-AVT---------GDTKGLVQLHSLSVVPLLNRFSIK----TQ 588 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~-~vs---------sD~~G~V~~h~ft~~rl~~~~t~~----s~ 588 (1950)
||...+..+..+. .|..+|-.++|.+.-. .+|+.+ ++. .|.++.+|.|..+...+- -++++ ..
T Consensus 94 ~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd-~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs-~f~~DPfd~rh 170 (1062)
T KOG1912|consen 94 VDFVLASVINWLS-HSNDSVQDLCWVPARD-DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS-CFRVDPFDSRH 170 (1062)
T ss_pred EEehhhhhhhhhc-CCCcchhheeeeeccC-cchheeEEecCCcEEEEEEccCCceeeccccCCccee-eeeeCCCCcce
Confidence 9999999888886 8889999999987422 134443 332 344444554444322111 11121 11
Q ss_pred eecCCCccccEEEeeccccccc
Q 000170 589 CLLDGQKTGIVLSASPLLFDES 610 (1950)
Q Consensus 589 ~ll~g~~~g~Vla~spLp~~~~ 610 (1950)
.++.| ..|.|+.+.-++..++
T Consensus 171 ~~~l~-s~g~vl~~~~l~~sep 191 (1062)
T KOG1912|consen 171 FCVLG-SKGFVLSCKDLGLSEP 191 (1062)
T ss_pred EEEEc-cCceEEEEeccCCCCC
Confidence 23445 6788888888776554
No 255
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=94.94 E-value=0.31 Score=64.48 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=82.8
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
|.+|..++ .+.++-... .+.+|+..+. . +..+.......|+-.++|.++||.+.++|+|..||.|.+|.
T Consensus 163 ~~~I~~~~~ge~~~i~~~~-~~~~~~v~~~-------~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~ 233 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMC-KIHIYFVPKH-------T-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR 233 (792)
T ss_pred CccEEEcCCceEEEEEEee-eEEEEEeccc-------c-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe
Confidence 67777765 455555444 5677766431 1 22221112234777799999999999999999999999997
Q ss_pred CCC--C-ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEE
Q 000170 525 VQR--A-SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLS 601 (1950)
Q Consensus 525 l~~--g-~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla 601 (1950)
=-. + +...++.-=|...|+++.|+.+ +-.++.+|-++ ... +|..-+.+ +.+|-+ =.++|+.
T Consensus 234 d~~~~~~~~t~t~lHWH~~~V~~L~fS~~-----G~~LlSGG~E~-VLv--------~Wq~~T~~-kqfLPR-Lgs~I~~ 297 (792)
T KOG1963|consen 234 DFGSSDDSETCTLLHWHHDEVNSLSFSSD-----GAYLLSGGREG-VLV--------LWQLETGK-KQFLPR-LGSPILH 297 (792)
T ss_pred ccccccccccceEEEecccccceeEEecC-----CceEeecccce-EEE--------EEeecCCC-cccccc-cCCeeEE
Confidence 543 2 1112221246789999999987 34455555554 222 34444454 555555 4556666
Q ss_pred eeccc
Q 000170 602 ASPLL 606 (1950)
Q Consensus 602 ~spLp 606 (1950)
+...|
T Consensus 298 i~vS~ 302 (792)
T KOG1963|consen 298 IVVSP 302 (792)
T ss_pred EEEcC
Confidence 55544
No 256
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.045 Score=66.83 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=37.5
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
..|+||-...... +.+++.+|+|.||..|.. -=++++ ...||+|...-.+
T Consensus 230 ~~CaIClEdY~~G---dklRiLPC~H~FH~~CID-pWL~~~---r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKG---DKLRILPCSHKFHVNCID-PWLTQT---RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccC---CeeeEecCCCchhhccch-hhHhhc---CccCCCCCCcCCC
Confidence 3899998777654 469999999999999995 223332 3579999985444
No 257
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.014 Score=67.18 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccc--------CCCcccccccccccCC----CCCeEEEecCCCccccccccccccc
Q 000170 1727 TAKSLIEDDTFYTMSVLKKEASHGYAP--------RSLLCCICNCLLTKNS----SSFQIRVFNCGHATHIQCELLENES 1794 (1950)
Q Consensus 1727 ~a~~Lle~Dl~~~l~~l~r~~~rG~~p--------~s~~C~iC~k~L~~~~----~~~~ivVF~CGHafH~~CL~~en~g 1794 (1950)
+--.++.+|.-...+.......-=|++ .+.+|.+||+++...- .....--..|+|.||+.|...=
T Consensus 188 lYyGvlgRdfa~icsd~mAs~iGfYs~~glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGW--- 264 (328)
T KOG1734|consen 188 LYYGVLGRDFAEICSDYMASTIGFYSPSGLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGW--- 264 (328)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhcccCCCCCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhh---
Confidence 334566666655444433322222332 2689999999997542 1123556789999999998531
Q ss_pred CCCCCCCCCCCcCCCcCccc
Q 000170 1795 SSKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1795 ~~~~~~~~CpiC~~~~~~~~ 1814 (1950)
+--|+...||-|..+-.-+|
T Consensus 265 civGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 265 CIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred eeecCCCCCchHHHHhhHhh
Confidence 11245789999987654443
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.68 E-value=0.24 Score=62.73 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=52.0
Q ss_pred CCCCeEEEEEcCCCCEEEEecCC---CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc--eE
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYAD---GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG--LV 569 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~d---G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G--~V 569 (1950)
+.+.+.+.+|||||++||.+..+ ..|.+||+.+|+... +. .+...+..++|++| +..++++.+..| .+
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~-~~~~~~~~~~~spD-----g~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA-SFPGMNGAPAFSPD-----GSKLAVSLSKDGNPDI 260 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCC-----CCEEEEEECCCCCccE
Confidence 45678999999999999987644 479999999987543 22 45566777899997 345555555444 36
Q ss_pred EEEcc
Q 000170 570 QLHSL 574 (1950)
Q Consensus 570 ~~h~f 574 (1950)
|.|..
T Consensus 261 ~~~d~ 265 (417)
T TIGR02800 261 YVMDL 265 (417)
T ss_pred EEEEC
Confidence 66654
No 259
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.65 E-value=0.1 Score=66.79 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=52.3
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
..+.|+|.|+||+.++|+.|..||+|++||..++.-..+ -+.-..+.++|.|+| ..++.+.++|.+.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~g------ai~~V~s~qGelQ 324 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDG------AIFVVGSEQGELQ 324 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCC------cEEEEEcCCceEE
Confidence 568899999999999999999999999999998854433 234678999999973 3555555655433
No 260
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=94.61 E-value=0.083 Score=61.30 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=59.6
Q ss_pred CCeEEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 497 APVTAMCFNQP-GDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 497 ~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
.+|+++|-.|. ...+++|..+|.|.|||..+..-...+-.+|..+|+.|.|.|.++ -.+.++.++|.+|.+..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p-----~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP-----EHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc-----hheeEecCCCcEEEEcCC
Confidence 34999998875 557889999999999999988644444459999999999999743 467777788999988765
No 261
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=94.44 E-value=0.11 Score=53.90 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=57.6
Q ss_pred cHHHHHHHHHHHhhcCchHHHHHHhhCCCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHH
Q 000170 1473 TDDMIELYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSE 1540 (1950)
Q Consensus 1473 ~~~l~elYIeLLCqydP~~Vl~fLqt~~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~ 1540 (1950)
+..+...|+ .++|..|.+||+.-+.++++++-+..++++.+.+++.+|...|.+.+||+++.+.
T Consensus 2 DTaLlk~Yl----~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 2 DTALLKCYL----ETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred cHHHHHHHH----HhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHH
Confidence 456788888 6699999999999878999999999999999999999999999999999987543
No 262
>PHA02929 N1R/p28-like protein; Provisional
Probab=94.38 E-value=0.082 Score=61.98 Aligned_cols=51 Identities=22% Similarity=0.375 Sum_probs=35.2
Q ss_pred CCCcccccccccccCCCCC--eEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSF--QIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~--~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|...+..+.... -.++-.|||.||..|+. +-+. ....||+|...
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~----~~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKK----EKNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHh----cCCCCCCCCCE
Confidence 3578999999877542111 13455899999999995 2222 24689999863
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.29 E-value=0.09 Score=64.21 Aligned_cols=57 Identities=7% Similarity=0.036 Sum_probs=51.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+|-+-|+.|+||||+++++++..|++|++-.....-.+..+--||+.-|..++-..+
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN 205 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC
Confidence 588899999999999999999999999998888777777777799999999998864
No 264
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.28 E-value=0.28 Score=62.85 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=63.9
Q ss_pred EEEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEE-EecCCCcEEEEE
Q 000170 449 VLAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLL-AGYADGHVTVWD 524 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~La-sG~~dG~I~lWD 524 (1950)
+.+++++.||..+.. ..|.+||+..+ +...+. ...+.+.+.+|||||+.|| +...+|...||.
T Consensus 202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g---------~~~~l~----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 202 AWSPDGTKLAYVSFESKKPVVYVHDLATG---------RRRVVA----NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eEcCCCCEEEEEEccCCCcEEEEEECCCC---------CEEEee----cCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345556788877642 45999998532 111221 1235577899999999987 467788766665
Q ss_pred --CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 525 --VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 525 --l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
+.++. .+.+. .|...+++..|++| +..++.++|..|.
T Consensus 269 ~d~~~~~-~~~lt-~~~~~~~~~~wSpD-----G~~l~f~s~~~g~ 307 (427)
T PRK02889 269 VNADGSG-LRRLT-QSSGIDTEPFFSPD-----GRSIYFTSDRGGA 307 (427)
T ss_pred EECCCCC-cEECC-CCCCCCcCeEEcCC-----CCEEEEEecCCCC
Confidence 44444 45554 45556678899998 3456666776553
No 265
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.27 E-value=0.37 Score=58.28 Aligned_cols=110 Identities=11% Similarity=0.154 Sum_probs=76.4
Q ss_pred cEEEEEcC--CEEEEE-eCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 447 PQVLAVHP--SFIAVG-MSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 447 pt~ia~s~--~~IAvG-ts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
+|+++-++ ..++.. -.+..|.|||..++ .++.+. ...-|.++-|.|||||++|.++.-|+.-++|
T Consensus 198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg---------~~~pL~---~~glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTG---------QKIPLI---PKGLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred eeEEEEcCCCCEEeecccCcceEEEEcCCCC---------Cccccc---ccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence 57776664 334443 34567999997432 112221 1235779999999999999999999999999
Q ss_pred -ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 524 -DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 524 -Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
.-++..+.+-+. +- +.|...+|++. +.+++.+.-..-.+|...|.
T Consensus 266 ~e~q~wt~erw~l-gs-grvqtacWspc-----GsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 266 QENQSWTKERWIL-GS-GRVQTACWSPC-----GSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred hhcccceecceec-cC-CceeeeeecCC-----CCEEEEEEcCCceEEEEeec
Confidence 455566665553 33 49999999998 45677777666677777764
No 266
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.26 E-value=0.27 Score=62.31 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
..+.+|+ .--|.=+++.+| + +| .+.....+.|+++.+|+-+..||+|..+|.|-.||-.......++
T Consensus 147 Dly~~gs-g~evYRlNLEqG----------r-fL-~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 147 DLYLVGS-GSEVYRLNLEQG----------R-FL-NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred cEEEeec-CcceEEEEcccc----------c-cc-cccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 3444454 445666777432 1 22 244445689999999999999999999999999999988766555
Q ss_pred cc-----CcC-----CCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 535 TG-----EHT-----SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 535 ~~-----~H~-----~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.- .|. ..|+.+.|..++ ..+..|-..|.|++|.+
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~g------L~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDG------LHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCc------eeEEeeccCCcEEEEEc
Confidence 21 233 359999999752 44555567789999886
No 267
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.19 E-value=0.06 Score=66.45 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=75.7
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
+||.++..|...--|+..| + ++ + ....-.|.+..|+-||-...+-.|+.+|+|.||.-+..+.+..+-
T Consensus 223 LL~~~~~~G~L~Y~DVS~G---------k-lV-a-~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 223 LLVAASEAGFLKYQDVSTG---------K-LV-A-SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred eeeecccCCceEEEeechh---------h-hh-H-HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 3777888898888888542 2 11 1 112246889999999999999999999999999999988776664
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEe-cCCceEEEEcccccccccce
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHSLSVVPLLNRF 583 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ft~~rl~~~~ 583 (1950)
-|.++|.+|++.++ ++..+.+| |.. +++|+.+
T Consensus 291 -cH~g~V~siAv~~~-----G~YMaTtG~Dr~----------~kIWDlR 323 (545)
T KOG1272|consen 291 -CHRGPVSSIAVDRG-----GRYMATTGLDRK----------VKIWDLR 323 (545)
T ss_pred -hcCCCcceEEECCC-----CcEEeecccccc----------eeEeeec
Confidence 79999999999986 44554444 543 6778754
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.18 E-value=0.55 Score=60.11 Aligned_cols=99 Identities=16% Similarity=0.075 Sum_probs=64.2
Q ss_pred EEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE-ecCCC--cEEEE
Q 000170 450 LAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA-GYADG--HVTVW 523 (1950)
Q Consensus 450 ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las-G~~dG--~I~lW 523 (1950)
.++++++||..+.+ ..|.+||+..+ ..+ .+ ....+.+.+.+|||||++||. ...+| .|.+|
T Consensus 206 wSpDG~~la~~s~~~~~~~l~~~~l~~g-------~~~--~l----~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 206 WSPDGKRIAYVSFEQKRPRIFVQNLDTG-------RRE--QI----TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred ECCCCCEEEEEEcCCCCCEEEEEECCCC-------CEE--Ec----cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 44556788765433 35888998532 111 11 112345667899999999884 44555 68899
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
|+.+++.. .++ .|...++...|++| +..++.++|..|.
T Consensus 273 d~~~~~~~-~lt-~~~~~~~~~~~spD-----g~~i~f~s~~~g~ 310 (430)
T PRK00178 273 DLASRQLS-RVT-NHPAIDTEPFWGKD-----GRTLYFTSDRGGK 310 (430)
T ss_pred ECCCCCeE-Ecc-cCCCCcCCeEECCC-----CCEEEEEECCCCC
Confidence 99988754 354 45556777899987 4456677777653
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.91 E-value=0.61 Score=60.31 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=64.2
Q ss_pred EEEEcCCEEEEEeCC-C--cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE-ecCCCc--EEE
Q 000170 449 VLAVHPSFIAVGMSK-G--AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA-GYADGH--VTV 522 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~-G--~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las-G~~dG~--I~l 522 (1950)
+..+++++||..+.+ | .|.+||...+ +.+ .+. . ..+...+.+|||||++||. ...+|. |.+
T Consensus 224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg-------~~~--~lt-~---~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQ-------VRE--KVT-S---FPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred eECCCCCEEEEEEecCCCcEEEEEECCCC-------CeE--Eec-C---CCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 345566788876443 3 5888887432 111 111 1 1234557899999998875 566675 888
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
||+.+++.. .+. .|...+....|++| +..++.+++..|.
T Consensus 291 ~dl~tg~~~-~lt-~~~~~~~~p~wSpD-----G~~I~f~s~~~g~ 329 (448)
T PRK04792 291 VDIATKALT-RIT-RHRAIDTEPSWHPD-----GKSLIFTSERGGK 329 (448)
T ss_pred EECCCCCeE-ECc-cCCCCccceEECCC-----CCEEEEEECCCCC
Confidence 899888753 444 45556778899997 4567777776654
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=93.90 E-value=0.19 Score=59.41 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=64.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCC-Ccee
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQR-ASAA 531 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~-g~~l 531 (1950)
++.+.+|+.||.+..||.|.. +...+. ....|+..|.||.=|| +++++++|+-|.+|++||+.+ |+.+
T Consensus 178 pnlvytGgDD~~l~~~D~R~p---------~~~i~~-n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIP---------KTFIWH-NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred CceEEecCCCceEEEEEecCC---------cceeee-cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 478999999999999999731 122332 2345888899998764 589999999999999999985 5655
Q ss_pred eeeccCcCCCeEEEEEecC
Q 000170 532 KVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 532 ~tl~~~H~~~I~~v~F~~d 550 (1950)
..- .-.+.|+.++..|-
T Consensus 248 ~~~--~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 248 FKA--KVGGGVWRIKHHPE 264 (339)
T ss_pred ccC--ccccceEEEEecch
Confidence 332 23489999999974
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.82 E-value=0.045 Score=58.97 Aligned_cols=88 Identities=26% Similarity=0.509 Sum_probs=68.8
Q ss_pred HHhcCchhhHHHhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhcccchhhHH
Q 000170 966 FEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGALVYL 1045 (1950)
Q Consensus 966 f~~~~~~~iFle~LEp~IL~g~I~~lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~LydaLIYI 1045 (1950)
|.+.+.....+..||-.+..+ ....+.+...++..|.+.+..+.++.++-.. ...|++.+.++|++++||++.+|+
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKEN--KENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTS--TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcc--cccCHHHHHHHHHHHHhcCCchHHHHHcccc--cccCHHHHHHHHHhcchHHHHHHH
Confidence 344455555666667677655 3378999999999999998878999998844 449999999999999999999999
Q ss_pred hhcccCCchhHHH
Q 000170 1046 FNKGLDDFRAPLE 1058 (1950)
Q Consensus 1046 ~n~~l~DYvTPL~ 1058 (1950)
|.+ +++|..-+.
T Consensus 93 y~~-~~~~~~al~ 104 (143)
T PF00637_consen 93 YSK-LGNHDEALE 104 (143)
T ss_dssp HHC-CTTHTTCSS
T ss_pred HHH-cccHHHHHH
Confidence 999 788877665
No 272
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=93.80 E-value=0.32 Score=65.46 Aligned_cols=108 Identities=21% Similarity=0.239 Sum_probs=82.3
Q ss_pred ccccCCCcEEEEE--cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAV--HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~--s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
.+.+-|++-.+.. ++.|||+-+.|-.|++|++.. . + .++.++=+|.+.|+.++|.|. .++++++|
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-------~--~--~~~~~~fgHsaRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-------R--E--VLGCTGFGHSARVWACCFLPN--RIITVGED 237 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-------c--c--ccCcccccccceeEEEEeccc--eeEEeccc
Confidence 4567888888877 679999999999999999842 1 1 112234469999999999998 99999999
Q ss_pred CcEEEEECCCCceeeeeccCc-CCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 518 GHVTVWDVQRASAAKVITGEH-TSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H-~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
-+.++|+.+ ++.+.++. +| ...|+.++...+ .+.++.++|++|
T Consensus 238 ctcrvW~~~-~~~l~~y~-~h~g~~iw~~~~~~~-----~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYD-EHSGKGIWKIAVPIG-----VIIKVTGGNDST 281 (967)
T ss_pred eEEEEEecc-cceehhhh-hhhhcceeEEEEcCC-----ceEEEeeccCcc
Confidence 999999765 56666775 77 578999998864 334455556654
No 273
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.24 Score=59.57 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=43.1
Q ss_pred ccCCCcccccccccccCC-------CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc-Ccccc-cccceee
Q 000170 1752 APRSLLCCICNCLLTKNS-------SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK-NTQRS-RNKTVLA 1822 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~-------~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~-~~~~~-~~~~~~~ 1822 (1950)
......|.+|...+-.++ .+..=.-..|||++|..|+..=. .....||+|...- -.|+| .-.++.+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~-----ERqQTCPICr~p~ifd~~~~~~~s~~v 358 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL-----ERQQTCPICRRPVIFDQSSPTPASPNV 358 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH-----HhccCCCcccCccccccCCCCcCCccc
Confidence 344678999987653321 11122457899999999995211 2347899998752 22332 2234555
Q ss_pred cCCcccc
Q 000170 1823 ESGLVSK 1829 (1950)
Q Consensus 1823 ~~~~~~~ 1829 (1950)
.|..|..
T Consensus 359 ~nt~I~t 365 (491)
T COG5243 359 RNTQIAT 365 (491)
T ss_pred ccceecc
Confidence 5555543
No 274
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=93.73 E-value=0.48 Score=56.68 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=59.1
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc---eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS---AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~---~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
-.||||.||++|++.+|.+-.+..|.||...+.+ ..++++ .|...|+.|.|.+. +.+++..+.|.+-.||..
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~----snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPK----SNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCC----CCceeEccCCCCcccccc
Confidence 4689999999999999999999999999998765 567776 89999999999986 234555555777666655
No 275
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=93.54 E-value=0.031 Score=47.26 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=29.9
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
.|.+|...+.. .+++..|||.||..|+.. .... ....||+|..
T Consensus 1 ~C~iC~~~~~~-----~~~~~~C~H~~c~~C~~~-~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFRE-----PVVLLPCGHVFCRSCIDK-WLKS---GKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhC-----ceEecCCCChhcHHHHHH-HHHh---CcCCCCCCCC
Confidence 48899887722 356667999999999952 2111 2367999975
No 276
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.47 E-value=0.64 Score=59.75 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=47.0
Q ss_pred CCCCeEEEEEcCCCCEEEEecC---CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYA---DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~---dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+.+.|.+.+|||||++||..+. +..|.+||+.+|+... +. .+.+.+....|++| +..++++.+..|
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~-~~~g~~~~~~~SpD-----G~~l~~~~s~~g 270 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VA-SFRGINGAPSFSPD-----GRRLALTLSRDG 270 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ec-cCCCCccCceECCC-----CCEEEEEEeCCC
Confidence 4568999999999999998763 3469999999887643 32 33444557899998 344555555544
No 277
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.30 E-value=0.19 Score=67.75 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=64.2
Q ss_pred CcceeeeEEecCChhHHHHhhhcccccc-CCC-cEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRD-HGS-PQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~-~G~-pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
|-+--++|+||+--. +..+.....+.- .+. -+|+|-++ .+||||+.+|.|++||. .+ .++|+.+
T Consensus 548 Gls~n~lfriDpR~~-~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g------~~AKT~l----- 614 (794)
T PF08553_consen 548 GLSDNSLFRIDPRLS-GNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LG------KRAKTAL----- 614 (794)
T ss_pred EECCCceEEeccCCC-CCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cc------hhhhhcC-----
Confidence 334445889987521 122322222221 111 38888887 79999999999999994 21 3445433
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
++-..||+.|+.+.||+||++-. +.-+.|+|+.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 33568999999999999988766 5677888863
No 278
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.25 E-value=1.1 Score=46.68 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=63.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
+.|.+||.|..|++|+- + + .+. .. ..++.|++|+-... ..++-|-++|+|-+||-.. .+=.+
T Consensus 16 ~eLlvGs~D~~IRvf~~-------~--e--~~~--Ei--~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRi 77 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKG-------D--E--IVA--EI--TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRI 77 (111)
T ss_pred ceEEEecCCcEEEEEeC-------C--c--EEE--EE--ecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeee
Confidence 68999999999999973 1 1 111 11 14678999997776 6689999999999998632 21111
Q ss_pred ccCcCCCeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 535 TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 535 ~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
. -...++++.+..-+ +.+...+|++-++|.|
T Consensus 78 K--SK~~~~~~~~~D~~--gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 78 K--SKNQVTSMAFYDIN--GDGVPELIVGWSNGKV 108 (111)
T ss_pred c--cCCCeEEEEEEcCC--CCCceEEEEEecCCeE
Confidence 1 13457777766432 2356678888888865
No 279
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.42 Score=58.44 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=77.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
..+|.+|--|.|++||.+.+ .. -+.. .+-...+|++++.-|+|+++.+|...|.+..+|+.+++.+...
T Consensus 217 ~~fat~T~~hqvR~YDt~~q------RR---PV~~--fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQ------RR---PVAQ--FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ceEEEEecceeEEEecCccc------Cc---ceeE--eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence 56999999999999998641 11 1211 1224678999999999999999999999999999999988774
Q ss_pred ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 535 TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 535 ~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
-+|-++.|.+|.-.|. .+.++.+|=++ .|..|.
T Consensus 286 ~kg~tGsirsih~hp~-----~~~las~GLDR-yvRIhD 318 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPT-----HPVLASCGLDR-YVRIHD 318 (412)
T ss_pred cCCccCCcceEEEcCC-----CceEEeeccce-eEEEee
Confidence 4588899999999974 45566655443 344444
No 280
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.18 E-value=0.57 Score=60.13 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=47.6
Q ss_pred CCCCeEEEEEcCCCCEEEEecC-C--CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYA-D--GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~-d--G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+.+.|.+.+|||||++||..+. + ..|.+||+.+|+..+ +. .....+....|++| +..++++++.+|
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-~~~g~~~~~~~SPD-----G~~la~~~~~~g 262 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VA-NFKGSNSAPAWSPD-----GRTLAVALSRDG 262 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-ee-cCCCCccceEECCC-----CCEEEEEEccCC
Confidence 5678999999999999987653 3 359999999997643 32 23345668899998 345665555555
No 281
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=93.17 E-value=0.026 Score=47.59 Aligned_cols=39 Identities=31% Similarity=0.630 Sum_probs=27.4
Q ss_pred ccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCc
Q 000170 1758 CCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLC 1806 (1950)
Q Consensus 1758 C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC 1806 (1950)
|.+|...+.. .+++..|||.|+..|+. +.+.. ...||+|
T Consensus 1 C~iC~~~~~~-----~~~~~~CGH~fC~~C~~-~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVTPCGHSFCKECIE-KYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEECTTSEEEEHHHHH-HHHHC----TSB-TTT
T ss_pred CCCCCCcccC-----cCEECCCCCchhHHHHH-HHHHC----cCCCcCC
Confidence 7788765555 37899999999999985 22222 3689998
No 282
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.13 E-value=0.3 Score=63.39 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=68.3
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..|..+++.++. .++|.||..|.|-||-+..+ ...+ ..........|...|||++||+||..|-+|+..|.|
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~----~p~~--~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE----LPRD--LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhcc----CCCc--ceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence 677777777776 67999999999999976321 1111 112222223477889999999999999999999999
Q ss_pred EEEECCCCcee----eeeccCcCCCeEEEEEe
Q 000170 521 TVWDVQRASAA----KVITGEHTSPVVHTLFL 548 (1950)
Q Consensus 521 ~lWDl~~g~~l----~tl~~~H~~~I~~v~F~ 548 (1950)
.+-.+.+.... +.+. --.+.|+.+.+.
T Consensus 149 ~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 149 VLTELDSRQAFLSKSQEIL-SEDSEIVQLDYL 179 (726)
T ss_pred EEEEechhhhhccccceee-ccCcceEEeecc
Confidence 99999883110 1111 123677777766
No 283
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=93.09 E-value=0.49 Score=56.57 Aligned_cols=88 Identities=18% Similarity=0.212 Sum_probs=62.7
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeec
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
|++...+|.|.+|++-+ .+ -.| .-+...+++++++|||||. .|.+..-+-.|.+|.+.+.++...-.
T Consensus 64 lC~~yk~~~vqvwsl~Q-------pe--w~c---kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQ-------PE--WYC---KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred eeeeeccceEEEEEeec-------ce--eEE---EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc
Confidence 56667888999999842 11 112 2233567899999999995 56667778899999999988754321
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
-...+-.++|++| ++..++.+
T Consensus 132 --pK~~~kg~~f~~d-----g~f~ai~s 152 (447)
T KOG4497|consen 132 --PKTNVKGYAFHPD-----GQFCAILS 152 (447)
T ss_pred --cccCceeEEECCC-----Cceeeeee
Confidence 2456688999997 56666665
No 284
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=93.07 E-value=0.054 Score=46.99 Aligned_cols=44 Identities=25% Similarity=0.518 Sum_probs=32.8
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
.|.+|.+.+.. ....++..|||.|...|+.. .. +....||+|.+
T Consensus 1 ~C~~C~~~~~~---~~~~~l~~CgH~~C~~C~~~-~~----~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSE---ERRPRLTSCGHIFCEKCLKK-LK----GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccC---CCCeEEcccCCHHHHHHHHh-hc----CCCCCCcCCCC
Confidence 48899998822 23589999999999999952 21 23579999963
No 285
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.05 E-value=1.1 Score=57.47 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=45.8
Q ss_pred CCCCeEEEEEcCCCCEEEEec---CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 495 SPAPVTAMCFNQPGDLLLAGY---ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~---~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+.+.+.+.+|||||++||..+ .+..|.+||+.+|+..... .....+..+.|+|| +..++.+++..|
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPD-----G~~La~~~~~~g 265 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPD-----GSKLAFALSKTG 265 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCC-----CCEEEEEEcCCC
Confidence 456899999999999998643 3457999999988753322 12233456899998 345666655555
No 286
>PRK00178 tolB translocation protein TolB; Provisional
Probab=92.93 E-value=1.1 Score=57.33 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=71.5
Q ss_pred cCChhHHHHhhhccccccCCCcEEEEEcCCEEEEEeCC------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCe
Q 000170 426 DANNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSK------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPV 499 (1950)
Q Consensus 426 ~~~~~iS~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~V 499 (1950)
+.++.+.+.|+...+..-.|.+-. .+.....+.+.. -.|.++|... ...+.+ ..+..++
T Consensus 137 ~~~r~~ah~i~d~i~~~ltg~~g~--f~~~ia~v~~~~~~~~~~~~l~~~d~~g-------~~~~~l------~~~~~~~ 201 (430)
T PRK00178 137 DQLRDMAHYISDQSFEKLTGIKGA--FSTRILYVTAERFSVNTRYTLQRSDYDG-------ARAVTL------LQSREPI 201 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc--ceeeEEEEEeeCCCCCcceEEEEECCCC-------CCceEE------ecCCCce
Confidence 346678888888777665555421 222222222211 1377777632 112222 1245679
Q ss_pred EEEEEcCCCCEEEEec-CC--CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 500 TAMCFNQPGDLLLAGY-AD--GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 500 tsLafS~DG~~LasG~-~d--G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
.+.+|||||++||..+ .+ ..|.+||+.+|+..+ +. .....+....|++| +..++++.+..|
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-~~~g~~~~~~~SpD-----G~~la~~~~~~g 265 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-NFEGLNGAPAWSPD-----GSKLAFVLSKDG 265 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc-CCCCCcCCeEECCC-----CCEEEEEEccCC
Confidence 9999999999998754 33 369999999987643 32 22334556889997 345666665555
No 287
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.61 E-value=0.85 Score=59.00 Aligned_cols=126 Identities=13% Similarity=0.156 Sum_probs=71.6
Q ss_pred ChhHHHHhhhccccccCCCcEEEEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEE
Q 000170 428 NNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCF 504 (1950)
Q Consensus 428 ~~~iS~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLaf 504 (1950)
++.+.+.|...-++.-.|.+-.+...-.|+.....+ ..|.++|... .+.+.+ ..+..++.+.+|
T Consensus 159 ~r~~~h~~~d~i~~~ltG~~g~f~~riayv~~~~~~~~~~~l~i~d~dG-------~~~~~l------~~~~~~~~~p~w 225 (448)
T PRK04792 159 FRQYAHRISDIVYEKLTGERGAFLTRIAYVVVNDKDKYPYQLMIADYDG-------YNEQML------LRSPEPLMSPAW 225 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCEEEEEEeeCCCCCceEEEEEeCCC-------CCceEe------ecCCCcccCceE
Confidence 456677777665555555543222221334433322 2566667521 122222 124568999999
Q ss_pred cCCCCEEEEecC-CC--cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce--EEEEc
Q 000170 505 NQPGDLLLAGYA-DG--HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL--VQLHS 573 (1950)
Q Consensus 505 S~DG~~LasG~~-dG--~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~--V~~h~ 573 (1950)
||||++||..+. +| .|.+||+.+|+... +. .........+|++| +..++++++..|. +|.+.
T Consensus 226 SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt-~~~g~~~~~~wSPD-----G~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 226 SPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VT-SFPGINGAPRFSPD-----GKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ec-CCCCCcCCeeECCC-----CCEEEEEEeCCCCeEEEEEE
Confidence 999999987643 33 59999999887532 32 11223446789998 3456666666664 44443
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=92.25 E-value=1.4 Score=56.64 Aligned_cols=103 Identities=7% Similarity=0.024 Sum_probs=62.0
Q ss_pred EEEEcCCEEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC---CcEEEEE
Q 000170 449 VLAVHPSFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD---GHVTVWD 524 (1950)
Q Consensus 449 ~ia~s~~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d---G~I~lWD 524 (1950)
+..++|++||..+. +|...+|.+.. +........+ ..+.+.+.+.+|||||++||....+ ..|.+||
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~-----~~~g~~~~~l----t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~d 357 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQI-----DPEGQSPRLL----TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYD 357 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEEC-----cccccceEEe----ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEE
Confidence 45666788887654 56656664311 0000111111 1234567889999999999876543 4699999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+.+|+.. .++.+ ...+.+..|++| +..++.++...|
T Consensus 358 l~~g~~~-~Lt~~-~~~~~~p~wSpD-----G~~L~f~~~~~g 393 (428)
T PRK01029 358 LATGRDY-QLTTS-PENKESPSWAID-----SLHLVYSAGNSN 393 (428)
T ss_pred CCCCCeE-EccCC-CCCccceEECCC-----CCEEEEEECCCC
Confidence 9999864 34322 345677899987 345555554443
No 289
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=92.08 E-value=0.037 Score=46.91 Aligned_cols=41 Identities=29% Similarity=0.594 Sum_probs=29.8
Q ss_pred ccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCc
Q 000170 1758 CCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLC 1806 (1950)
Q Consensus 1758 C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC 1806 (1950)
|.+|...+..+ .++..|||.|+..|+.. .... .....||+|
T Consensus 1 C~iC~~~~~~~-----~~~~~C~H~fC~~C~~~-~~~~--~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP-----VILLPCGHSFCRDCLRK-WLEN--SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE-----EEETTTSEEEEHHHHHH-HHHH--TSSSBTTTT
T ss_pred CCcCCccccCC-----CEEecCCCcchHHHHHH-HHHh--cCCccCCcC
Confidence 78888766654 47899999999999962 2221 234789998
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=91.98 E-value=0.27 Score=40.61 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=28.2
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEe
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVP 470 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd 470 (1950)
.|+...+.+++++.++ .+||+|+.||.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4566778899999987 7999999999999997
No 291
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.023 Score=53.78 Aligned_cols=57 Identities=21% Similarity=0.413 Sum_probs=41.0
Q ss_pred cccCCCcccccccccccC-------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1751 YAPRSLLCCICNCLLTKN-------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~-------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
|.....+|.+|+-++.+. +....+|.-.|.|+||..|+.. -.....+...||+|...
T Consensus 16 W~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~--wl~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 16 WDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILK--WLNTPTSQGQCPMCRQT 79 (84)
T ss_pred EcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHH--HhcCccccccCCcchhe
Confidence 556678999999888752 2345687778999999999852 12223355789999763
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=91.91 E-value=0.13 Score=59.79 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=72.8
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
.--+++-|....++.++.-|.+.. .--+++|++.++ ..+++||.+|.|-+||.+.. . ......
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~---~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---------~--~p~S~l 219 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKK---ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---------A--MPVSLL 219 (319)
T ss_pred eEeeccceeeeccccccccccccc---ccccchhhhCCcccccEEEEecCCCeEEEEEcccc---------c--chHHHH
Confidence 445667777777787776665431 112288888887 67999999999999998631 0 101123
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCC
Q 000170 493 DRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQR 527 (1950)
Q Consensus 493 ~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~ 527 (1950)
..|..+++-+-|.| ++..|.++++||.+-.||..+
T Consensus 220 ~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 45889999999986 689999999999999999875
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=91.84 E-value=18 Score=51.04 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=72.1
Q ss_pred CcEEEEEcCCEEEEEeC---CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 446 SPQVLAVHPSFIAVGMS---KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts---~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
.+-+=.|+|++||+--. +-.|.+|... |+.|. .+.+ ........|..|+||+||+.||.-..|. |.|
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhg------eF~l--~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqL 329 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHG------EFTL--RFDPEEEKVIELAWNSDSEILAVWLEDR-VQL 329 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEee------eEec--CCCCCCceeeEEEECCCCCEEEEEecCC-ceE
Confidence 34555667888887654 3567777641 22111 1121 1223567899999999999999988666 999
Q ss_pred EECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 523 WDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 523 WDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
|=..+.. ..+.+.-.....+..+.|.+.. ...+...-.+|.+..+.|.
T Consensus 330 Wt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~-----p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 330 WTRSNYHWYLKQEIRFSSSESVNFVKWDPEK-----PLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EEeeCCEEEEEEEEEccCCCCCCceEECCCC-----CCEEEEEecCCcEEEEEEE
Confidence 9999874 3333432334556679999863 2333333344777777765
No 294
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=91.80 E-value=0.97 Score=61.33 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=69.7
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC--CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD--RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~--~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
..+|.++..+..||.|... .+ ++.. ++. .....-+|+|=+.+|. +|+|+.+|.||||| ..|+..+|.
T Consensus 545 tflGls~n~lfriDpR~~~-------~k-~v~~-~~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd-~~g~~AKT~ 613 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSG-------NK-LVDS-QSKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYD-RLGKRAKTA 613 (794)
T ss_pred eEEEECCCceEEeccCCCC-------Cc-eeec-cccccccCCCceEEEecCCce-EEEEeCCCcEEeec-ccchhhhhc
Confidence 6788899999999987521 12 2211 221 1345688888777775 89999999999999 456667776
Q ss_pred ccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 535 TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 535 ~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
-.+-..||++|.-+.| +..++.+++..
T Consensus 614 lp~lG~pI~~iDvt~D-----GkwilaTc~ty 640 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTAD-----GKWILATCKTY 640 (794)
T ss_pred CCCCCCCeeEEEecCC-----CcEEEEeecce
Confidence 6577899999999988 67888888875
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=91.73 E-value=0.72 Score=55.66 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=75.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
+.-+|...|.|.+-.+-. +.. ..+. +..+|.++|++++|.+-...|-+|+.|..|.+||+.-++-..-..
T Consensus 167 ~~fvGd~~gqvt~lr~~~-------~~~-~~i~--~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el 236 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQ-------NGC-QLIT--TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL 236 (404)
T ss_pred EEEecccccceEEEEEee-------cCC-ceEE--EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee
Confidence 677788888877665421 111 1121 335699999999999999999999999999999998665443333
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.+|+..|..+.+.. --..++|+|++|.+-.++.
T Consensus 237 ~gh~~kV~~l~~~~------~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQ------HTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred ccchhhhhhhhhhh------hheeeeeccCCCeEEEEec
Confidence 49998888888774 2346888898888777763
No 296
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=91.71 E-value=1 Score=56.75 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=62.5
Q ss_pred EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccC
Q 000170 458 AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537 (1950)
Q Consensus 458 AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~ 537 (1950)
++-..+|.|.|.|.... +-... + . . ..+.-..++|++||+++.+.+.||.|.+||+.+++.++++..|
T Consensus 10 V~~~~~~~v~viD~~t~------~~~~~-i-~-~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN------KVVAR-I-P-T---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp EEEGGGTEEEEEETTT-------SEEEE-E-E-----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred EEecCCCEEEEEECCCC------eEEEE-E-c-C---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence 34556899999997431 11111 1 0 1 1222345789999999999999999999999999999988644
Q ss_pred cCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 538 HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 538 H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
. .-.++++++| +..++++.-..|.|....
T Consensus 78 ~--~~~~i~~s~D-----G~~~~v~n~~~~~v~v~D 106 (369)
T PF02239_consen 78 G--NPRGIAVSPD-----GKYVYVANYEPGTVSVID 106 (369)
T ss_dssp S--EEEEEEE--T-----TTEEEEEEEETTEEEEEE
T ss_pred C--CcceEEEcCC-----CCEEEEEecCCCceeEec
Confidence 3 4577999988 456677765555555554
No 297
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.68 E-value=0.35 Score=42.77 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~ 530 (1950)
....|++++|||....||.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3567999999999999999999999999999 5654
No 298
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=90.94 E-value=0.96 Score=64.00 Aligned_cols=116 Identities=16% Similarity=0.285 Sum_probs=81.8
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
..--.+.|+..|+ .|-.+|+.||.|++|.+..+ +. ..++. ++ .++.||.+.|+.+|.....+..||.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~------~~--v~~~r-t~--g~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG------QQ--VVCFR-TA--GNSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCC------Ce--EEEee-cc--CcchhhhhhhcccCCceeeeccCCc
Confidence 3444456666665 57889999999999998542 22 23433 22 2488999999999999999999999
Q ss_pred EEEEECCCC-----cee-------e------------------------------eeccCcCCCeEEEEEecCCCccCCc
Q 000170 520 VTVWDVQRA-----SAA-------K------------------------------VITGEHTSPVVHTLFLGQDSQVTRQ 557 (1950)
Q Consensus 520 I~lWDl~~g-----~~l-------~------------------------------tl~~~H~~~I~~v~F~~d~~~~~~~ 557 (1950)
+-+|-+... +|- + -+...|.+.++.++|.| +|
T Consensus 2275 l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P------~~ 2348 (2439)
T KOG1064|consen 2275 LSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP------KH 2348 (2439)
T ss_pred eeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC------cc
Confidence 999998722 221 0 00124677888888887 57
Q ss_pred eEEEEecCCceEEEEcc
Q 000170 558 FKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 558 ~~~vssD~~G~V~~h~f 574 (1950)
.++++|-.+|-|+.+..
T Consensus 2349 qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred eEEEecCCcCcEEEeeh
Confidence 78888888887666654
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.92 E-value=1.7 Score=54.16 Aligned_cols=117 Identities=13% Similarity=0.197 Sum_probs=82.7
Q ss_pred ccccccCcceeeeEEecCChhHHHHhhhccccccCCCcEE--EEEcCCEEEEEeCCC-cEEEEeCCCCCCccCcccceee
Q 000170 410 LEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQV--LAVHPSFIAVGMSKG-AIVVVPGKYSAHHRDSMDSKMM 486 (1950)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~--ia~s~~~IAvGts~G-~I~vfd~k~~~~~~d~~~~k~~ 486 (1950)
..-|+||+- |...++..-+-|+.+ -|.+.. +...+.-.++||.+| .+-|||...+ ..+.+
T Consensus 335 ia~VSRGka----Fi~~~~~~~~iqv~~------~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------e~kr~ 397 (668)
T COG4946 335 IALVSRGKA----FIMRPWDGYSIQVGK------KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------EVKRI 397 (668)
T ss_pred EEEEecCcE----EEECCCCCeeEEcCC------CCceEEEEEccCCcceEEeccCCceEEEEecCCc-------eEEEe
Confidence 445777765 344455555544442 233433 444456799999999 8999997532 22322
Q ss_pred eecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 487 MLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 487 ~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
...-|.|-+|+.|+||+++++|-..+.|-+.|+.+|.+. .+..-.-+-|+...|+++
T Consensus 398 ------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~n 454 (668)
T COG4946 398 ------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPN 454 (668)
T ss_pred ------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCC
Confidence 234688999999999999999999999999999999874 332234578999999986
No 300
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=90.92 E-value=0.13 Score=47.90 Aligned_cols=43 Identities=28% Similarity=0.584 Sum_probs=21.5
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.+|..|...|..+ +..++|.|.|-..|+. +..| ..||+|...-
T Consensus 8 LrCs~C~~~l~~p-----v~l~~CeH~fCs~Ci~-~~~~------~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEP-----VCLGGCEHIFCSSCIR-DCIG------SECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS------B---SSS--B-TTTGG-GGTT------TB-SSS--B-
T ss_pred cCCcHHHHHhcCC-----ceeccCccHHHHHHhH-HhcC------CCCCCcCChH
Confidence 5799999887765 6789999999999996 3333 4699998643
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=90.90 E-value=1.8 Score=50.87 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=58.3
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 000170 451 AVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 451 a~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~ 530 (1950)
..++.+.++-.....|..|.+-- +..-...+.++ . ....=-+.+||......|+|+.||++.|||+..-..
T Consensus 167 snd~~~~~~Vgds~~Vf~y~id~-----~sey~~~~~~a--~--t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 167 SNDPSWGSSVGDSRRVFRYAIDD-----ESEYIENIYEA--P--TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cCCCceEEEecCCCcceEEEeCC-----ccceeeeeEec--c--cCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 34457766655555788886511 01111112222 1 122335678999999999999999999999987543
Q ss_pred e-eee---ccCcCCCeEEEEEecCC
Q 000170 531 A-KVI---TGEHTSPVVHTLFLGQD 551 (1950)
Q Consensus 531 l-~tl---~~~H~~~I~~v~F~~d~ 551 (1950)
. .++ ...|+++|..+.|++.+
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCC
Confidence 2 222 23689999999999753
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=5.2 Score=53.59 Aligned_cols=65 Identities=20% Similarity=0.350 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhcCchHHHHHHhhCC----CCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHh
Q 000170 1475 DMIELYLELLCRYERDSVLKFLETFD----SYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELN 1542 (1950)
Q Consensus 1475 ~l~elYIeLLCqydP~~Vl~fLqt~~----~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~ 1542 (1950)
-+...|++| .+-+++-+|++..+ .+++|.|+++|++++..|.+-+|=.|-+...-+++++++.+.
T Consensus 436 lLLncYiKl---kd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ 504 (933)
T KOG2114|consen 436 LLLNCYIKL---KDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLH 504 (933)
T ss_pred HHHHHHHHh---cchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 456777743 35678889999877 589999999999999999999988888888888887776654
No 303
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.69 E-value=0.98 Score=58.35 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce---------------eeeeccCcCCCeEEEEEecCCCccCCceE
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA---------------AKVITGEHTSPVVHTLFLGQDSQVTRQFK 559 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~---------------l~tl~~~H~~~I~~v~F~~d~~~~~~~~~ 559 (1950)
.+....|++|+...-|+|+|++||.+++-.+.+.+. -+++ .||+..|.-+.|.. .+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe------~~QK 85 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNE------NNQK 85 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEecc------cccc
Confidence 467789999999999999999999999998876431 1345 39999999999996 3678
Q ss_pred EEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecc
Q 000170 560 AVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPL 605 (1950)
Q Consensus 560 ~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spL 605 (1950)
+.++|.+|++..+-.. ++-| +.-....+..+.|.+++.-
T Consensus 86 LTtSDt~GlIiVWmly-kgsW------~EEMiNnRnKSvV~SmsWn 124 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLY-KGSW------CEEMINNRNKSVVVSMSWN 124 (1189)
T ss_pred ccccCCCceEEEEeee-cccH------HHHHhhCcCccEEEEEEEc
Confidence 9999999988776653 3344 1122222356667777763
No 304
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.66 E-value=0.072 Score=53.37 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=40.2
Q ss_pred ccccCCCccccccccccc--------C--CCCCeEEEec-CCCcccccccccccccCCCCCCCCCCCcCCCcCccc
Q 000170 1750 GYAPRSLLCCICNCLLTK--------N--SSSFQIRVFN-CGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1750 G~~p~s~~C~iC~k~L~~--------~--~~~~~ivVF~-CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~ 1814 (1950)
+|-+.-..|.||+..|-. . .+..-.|+++ |.|+||..|+.. =+. ....||+|.+.=.-|+
T Consensus 41 aWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisr-Wlk----tr~vCPLdn~eW~~qr 111 (114)
T KOG2930|consen 41 AWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISR-WLK----TRNVCPLDNKEWVFQR 111 (114)
T ss_pred eeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHH-HHh----hcCcCCCcCcceeEee
Confidence 566778999999977631 1 1223355665 999999999862 122 2478999997655443
No 305
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=90.63 E-value=0.11 Score=44.77 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=25.8
Q ss_pred ccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCc
Q 000170 1758 CCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLC 1806 (1950)
Q Consensus 1758 C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC 1806 (1950)
|.+|...+..+ +...|||.|-..|+.. ......+....||.|
T Consensus 1 CpiC~~~~~~P------v~l~CGH~FC~~Cl~~-~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP------VSLPCGHSFCRSCLER-LWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE------EE-SSSSEEEHHHHHH-HHCCSSSST---SSS
T ss_pred CCccchhhCCc------cccCCcCHHHHHHHHH-HHHccCCcCCCCcCC
Confidence 78898877776 5679999999999963 222212223689998
No 306
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=0.16 Score=59.77 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1736 TFYTMSVLKKEASHGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1736 l~~~l~~l~r~~~rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
+.-++.+.......| -.|.+|-....+. +.++|.+|.|.||..|+..=.. +....||+|..
T Consensus 309 lkpls~e~~~ea~~G-----veCaICms~fiK~---d~~~vlPC~H~FH~~Cv~kW~~----~y~~~CPvCrt 369 (374)
T COG5540 309 LKPLSIERAVEADKG-----VECAICMSNFIKN---DRLRVLPCDHRFHVGCVDKWLL----GYSNKCPVCRT 369 (374)
T ss_pred eeechhHhHHhcCCC-----ceEEEEhhhhccc---ceEEEeccCceechhHHHHHHh----hhcccCCccCC
Confidence 334555556666667 4799999887754 4699999999999999952111 23468999975
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.50 E-value=0.48 Score=62.00 Aligned_cols=114 Identities=18% Similarity=0.314 Sum_probs=81.6
Q ss_pred ccccCCCcEEEEEcC--CEEEEE----eCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVG----MSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvG----ts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las 513 (1950)
|-...|.+|-+.-|| -++||+ +..|.|-||-- +.++++- + .-.-.+|++||.|..-.||+
T Consensus 11 ~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfad-----tGEPqr~---V------t~P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 11 FLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-----TGEPQRD---V------TYPVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccccccccccCCCCceeEEEEecCCCCceEEEEec-----CCCCCcc---c------ccceehhhhccChHHHHHhh
Confidence 334455566555555 466665 45688888832 1111110 0 01123788999999999999
Q ss_pred ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 514 GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|-.-|.|.+|..++.+- ++...-|+.+|+.+.|+++| +.++++|.-|.|..+..
T Consensus 77 gwe~g~~~v~~~~~~e~-htv~~th~a~i~~l~wS~~G------~~l~t~d~~g~v~lwr~ 130 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTET-HTVVETHPAPIQGLDWSHDG------TVLMTLDNPGSVHLWRY 130 (1416)
T ss_pred ccccceeEEEecCCcee-eeeccCCCCCceeEEecCCC------CeEEEcCCCceeEEEEe
Confidence 99999999999887654 45555899999999999974 68999999999888775
No 308
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=90.26 E-value=0.15 Score=49.01 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=40.5
Q ss_pred cccCCCcccccccccccC----------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCcccc
Q 000170 1751 YAPRSLLCCICNCLLTKN----------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQRS 1815 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~----------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~~ 1815 (1950)
|-+.-.+|.+|+..+-+. .....++.--|.|+||..|+.. =+ .....||+|.++=.-+++
T Consensus 16 wdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~r-WL----~Tk~~CPld~q~w~~~~~ 85 (88)
T COG5194 16 WDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYR-WL----DTKGVCPLDRQTWVLADG 85 (88)
T ss_pred cccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHH-HH----hhCCCCCCCCceeEEecc
Confidence 334468899999888642 1234567777999999999852 11 124689999876554543
No 309
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=90.00 E-value=50 Score=46.87 Aligned_cols=71 Identities=13% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
+.+..+..-+ .-+++++.+|-|+++..-.++ +..... +.+ .-.+.|+|++||||+..||....+|++.+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~---~~~~~E--~VG----~vd~GI~a~~WSPD~Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDP---DEDEIE--IVG----SVDSGILAASWSPDEELLALVTGEGNLLL 146 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCC---CCceeE--EEE----EEcCcEEEEEECCCcCEEEEEeCCCEEEE
Confidence 3444444433 569999999999999221000 111111 211 12456999999999999999999999988
Q ss_pred EE
Q 000170 523 WD 524 (1950)
Q Consensus 523 WD 524 (1950)
-.
T Consensus 147 mt 148 (928)
T PF04762_consen 147 MT 148 (928)
T ss_pred Ee
Confidence 64
No 310
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=89.61 E-value=0.13 Score=41.86 Aligned_cols=39 Identities=33% Similarity=0.570 Sum_probs=26.5
Q ss_pred ccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCc
Q 000170 1758 CCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLC 1806 (1950)
Q Consensus 1758 C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC 1806 (1950)
|.+|.... ...++..|||.||..|+.. ... .....||+|
T Consensus 1 C~iC~~~~------~~~~~~~C~H~~c~~C~~~-~~~---~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL------KDPVVLPCGHTFCRSCIRK-WLK---SGNNTCPIC 39 (39)
T ss_pred CCcCccCC------CCcEEecCCChHHHHHHHH-HHH---hCcCCCCCC
Confidence 66777651 2467889999999999952 111 123579987
No 311
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=89.56 E-value=3.3 Score=49.42 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=80.8
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEEEECCCC-ce
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDVQRA-SA 530 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g-~~ 530 (1950)
.+.-|+|+.++|.+.+-+... ...+.. .....|.-+.+...||.. -..+-+|+.||.+.-||+..+ +.
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~-------~~le~v---q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETE-------MVLEKV---QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred cCceEEEEcCCCcEEEEecce-------eeeeec---ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 356699999999999665421 111110 123568888999999754 568999999999999999843 44
Q ss_pred eeeeccCcCCCeEEEEEecCCCccCCceEEEEe-cCCceEEEEcccccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 531 AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 531 l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
+-.-...|...|++|.=++-. .+.++.++ |+. +++|+.+.. .+.++.+.-.|-|-.+.-.|
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~----~~~I~TGsYDe~----------i~~~DtRnm-~kPl~~~~v~GGVWRi~~~p 263 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPK----PTYIATGSYDEC----------IRVLDTRNM-GKPLFKAKVGGGVWRIKHHP 263 (339)
T ss_pred eeecceeeecceEEEecCCCC----CceEEEeccccc----------eeeeehhcc-cCccccCccccceEEEEecc
Confidence 433233789999999988642 23444444 553 455654322 24555553334464444433
No 312
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=89.53 E-value=1.2 Score=51.22 Aligned_cols=101 Identities=14% Similarity=0.323 Sum_probs=75.7
Q ss_pred hHHhhhcCCCC-CCCHHHHHHHHHHHhcCCCCCccchhhhhhhHHHHHHHHHHhhcCCCCCCChHHHHHHHHhhhHHHHH
Q 000170 1240 FIACYVASGRA-TVSKSVLSQILQYLTSEKNVPQSILSHIETSKRREKQLLALLEAVPETDWNASEVLHLCENAHFYQVC 1318 (1950)
Q Consensus 1240 FIA~~lar~~i-~Ls~svL~~IL~~L~~~~~~~~~~~~d~~~~e~RE~aL~~LLs~y~~~d~d~d~lL~L~e~A~FyrVL 1318 (1950)
-+.-++-.+.+ .+++.++..++++..+.+ +-..+++++=..++..+|.+.++.+|++.+.|.++
T Consensus 7 ~Lep~Il~~~i~~lpp~v~k~lv~~y~~~~---------------~~~~lE~lI~~LD~~~LDidq~i~lC~~~~Lydal 71 (196)
T PF12816_consen 7 CLEPFILSGKIKSLPPEVFKALVEHYASKG---------------RLERLEQLILHLDPSSLDIDQVIKLCKKHGLYDAL 71 (196)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHhCCHHhcCHHHHHHHHHHCCCCCee
Confidence 34445555555 589999999999986432 23457888888888889999999999999999999
Q ss_pred HHHHHH-cCCHHHHHHHHHhcc----CC--------------cchhHHHHHHHHhh
Q 000170 1319 GLIHTI-RYNYLAALDSYMKDV----DE--------------PICAFSFIHDTLLQ 1355 (1950)
Q Consensus 1319 ~~LY~~-~~qY~~aL~~yL~D~----d~--------------~~~VF~yI~~~L~~ 1355 (1950)
.++|.+ -++|..=|.-++..- .. ...+|.||.-+|..
T Consensus 72 IYv~n~~l~DYvTPL~~ll~~i~~~~~~~~~~~~~~~~~~~~~~kil~Yls~~L~G 127 (196)
T PF12816_consen 72 IYVWNRALNDYVTPLEELLELIRSALNKCQIFDSSSEEDSELGYKILVYLSYCLTG 127 (196)
T ss_pred eeeeeccccCCcHHHHHHHHHHHHhhhcccccCcchhhhhhhHHHHHHHHHHHHcC
Confidence 999954 499987777655531 10 12489999998874
No 313
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=0.11 Score=62.82 Aligned_cols=50 Identities=30% Similarity=0.580 Sum_probs=29.9
Q ss_pred cCCCcccccccccccCCCCCeEE-EecCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIR-VFNCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~iv-VF~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
|-...|.+|-. +... ...+- +-.|||.||..|+..-..++ .+.-.||+|.
T Consensus 2 pi~A~C~Ic~d-~~p~--~~~l~~i~~cGhifh~~cl~qwfe~~--Ps~R~cpic~ 52 (465)
T KOG0827|consen 2 PIMAECHICID-GRPN--DHELGPIGTCGHIFHTTCLTQWFEGD--PSNRGCPICQ 52 (465)
T ss_pred CccceeeEecc-CCcc--ccccccccchhhHHHHHHHHHHHccC--CccCCCCcee
Confidence 44678999932 2211 11222 33599999999996222232 2235899998
No 314
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=89.51 E-value=2.6 Score=51.92 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=74.0
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
-.|.|+||+.-+.+|++|. .+.|.+|+++.. ........ . .....|++|.. -+.++++|.....|.+
T Consensus 87 ~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~------~~l~~~~~---~-~~~~~i~sl~~--~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 87 VKGPVTAICSFNGRLVVAV-GNKLYVYDLDNS------KTLLKKAF---Y-DSPFYITSLSV--FKNYILVGDAMKSVSL 153 (321)
T ss_dssp ESS-EEEEEEETTEEEEEE-TTEEEEEEEETT------SSEEEEEE---E--BSSSEEEEEE--ETTEEEEEESSSSEEE
T ss_pred ecCcceEhhhhCCEEEEee-cCEEEEEEccCc------ccchhhhe---e-cceEEEEEEec--cccEEEEEEcccCEEE
Confidence 4788999999988888885 479999998531 11111111 1 11235666654 5779999999999998
Q ss_pred EECCC-Cceeeee-ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 523 WDVQR-ASAAKVI-TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 523 WDl~~-g~~l~tl-~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+.... +..+..+ .+.....|+++.|..+ .. .++++|..|.++.....
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d-----~~-~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVD-----ED-TIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-S-----SS-EEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecC-----Cc-EEEEEcCCCeEEEEEEC
Confidence 85543 3323333 2344567999999976 23 88999999998887753
No 315
>PRK01029 tolB translocation protein TolB; Provisional
Probab=89.38 E-value=3.2 Score=53.45 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCCCEEEEec-CCCcEEEEE--CCC-CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 497 APVTAMCFNQPGDLLLAGY-ADGHVTVWD--VQR-ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~-~dG~I~lWD--l~~-g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+.+++.+|||||++|+..+ .+|...||. +.. +...+.++ .+...+....|+|| +..++.+++..|
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPD-----G~~Laf~~~~~g 349 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPD-----GKKIAFCSVIKG 349 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCC-----CCEEEEEEcCCC
Confidence 4457789999999888665 467666664 432 33344454 44457788899998 345666666555
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=89.06 E-value=4.5 Score=48.34 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
+++.+|+.||+= .|..|.|=..|-+. ....+++.+ ..+....-+-|+|||||+.||.++..|+|+++|+..
T Consensus 4 ~~~~~Gk~lAi~-qd~~iEiRsa~Ddf---~si~~kcqV----pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g- 74 (282)
T PF15492_consen 4 ALSSDGKLLAIL-QDQCIEIRSAKDDF---SSIIGKCQV----PKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG- 74 (282)
T ss_pred eecCCCcEEEEE-eccEEEEEeccCCc---hheeEEEec----CCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-
Confidence 344556767765 44455555443211 111122221 223445678899999999999999999999999985
Q ss_pred ceeeeeccCc------CCCeEEEEEec
Q 000170 529 SAAKVITGEH------TSPVVHTLFLG 549 (1950)
Q Consensus 529 ~~l~tl~~~H------~~~I~~v~F~~ 549 (1950)
..+.++..++ +.+|..+.|..
T Consensus 75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~ 101 (282)
T PF15492_consen 75 SELFVIPPAMSFPGDLSDAIAGLIFLE 101 (282)
T ss_pred ceeEEcCcccccCCccccceeeeEeec
Confidence 5555666544 24666666764
No 317
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=88.39 E-value=3.4 Score=48.72 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=70.6
Q ss_pred cccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC--EEEEecCCC
Q 000170 441 RRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD--LLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~--~LasG~~dG 518 (1950)
..+.|.-+++.-.....|||+.||++-|||+++-. +.. .....+-+.|.|+|+...||+-|- .|.-.-.=+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~------tpm-~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs 274 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA------TPM-AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS 274 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccc------cch-hhhcccCCCCCCceEEEEecCCCcceEEEEecCcc
Confidence 34677777777666789999999999999997521 110 111113345999999999998664 455555567
Q ss_pred cEEEEECCCCceeeeec---c---CcC-CCeEEEEEecC
Q 000170 519 HVTVWDVQRASAAKVIT---G---EHT-SPVVHTLFLGQ 550 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~---~---~H~-~~I~~v~F~~d 550 (1950)
-+.+-|+.+++..+.+. + -|. ..|....|..+
T Consensus 275 ~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 275 RVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred eEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 89999999997554442 1 243 34888888865
No 318
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=87.93 E-value=0.34 Score=68.10 Aligned_cols=76 Identities=17% Similarity=0.405 Sum_probs=58.0
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
+-+-|.+||++.-| +.+.+|+.+|.|.+||+++- ++. |+=++ +. -..++++|+..|
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr----------ql~-------h~~~~----~~-~~~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR----------QLR-------HTFQA----LD-TREYFVTGSSEG 2390 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH----------HHH-------HHhhh----hh-hhheeeccCccc
Confidence 55788899999887 68999999999999998641 111 11111 22 456899999999
Q ss_pred cEEEEECCCCceeeeeccCc
Q 000170 519 HVTVWDVQRASAAKVITGEH 538 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H 538 (1950)
.|+||++.....++++...|
T Consensus 2391 ~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2391 NIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred ceEEEEccccchhhcCchhh
Confidence 99999999998888887666
No 319
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.71 E-value=0.6 Score=58.39 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=80.7
Q ss_pred ccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
|..+.-++.+|+.- .+-.+++++|.+|++|.+|... |.. +...|. .+-..|..+|..|.|=.|-.++|+. |
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg---D~~-~tsaCQ-fTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG---DEI-GTSACQ-FTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc---Ccc-ccceee-eEhhhccCcccceeeeeccceeeec--c
Confidence 33334444554432 2457788999999999997532 211 111121 1345699999999999999888765 7
Q ss_pred CcEEEEECCCCceee-eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee
Q 000170 518 GHVTVWDVQRASAAK-VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK 586 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~-tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~ 586 (1950)
|-|.+||-=.|..+. ..+....+++..|.-.++ ..++.++.++... +.+++++.++|+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n---v~~~iliAgcsae--------STVKl~DaRsce 862 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN---VDRHILIAGCSAE--------STVKLFDARSCE 862 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEeccc---Ccchheeeeccch--------hhheeeeccccc
Confidence 999999998888764 333333467777877764 1356554443332 125566555554
No 320
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.41 E-value=0.77 Score=35.92 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.9
Q ss_pred CcEEEEEcCCEEEEEeCCCcEEEEe
Q 000170 446 SPQVLAVHPSFIAVGMSKGAIVVVP 470 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts~G~I~vfd 470 (1950)
.++|++.+++++|++||.+.+++|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 4789999999999999999999984
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.36 E-value=0.73 Score=60.72 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=69.5
Q ss_pred ccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 438 QAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 438 ~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
..|+..-..-||+|+++ ++|++|+-.|-|++|++.+|. +.. .-..|+++||-|--|.||.++++.+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-----~e~-------s~ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-----MEE-------SVNCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-----ccc-------cccccccccccccccCCcceeeeec
Confidence 46666666679999997 799999999999999986542 111 1134899999999999999888776
Q ss_pred CCC--cEEEEECCC-CceeeeeccCcCCCeEEEEEec
Q 000170 516 ADG--HVTVWDVQR-ASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 516 ~dG--~I~lWDl~~-g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
... ...||++.. +...+++. .=.+|.|+.
T Consensus 1163 s~S~PlsaLW~~~s~~~~~Hsf~-----ed~~vkFsn 1194 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD-----EDKAVKFSN 1194 (1516)
T ss_pred cccCchHHHhccccccCcccccc-----ccceeehhh
Confidence 544 589999975 34444443 334677875
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.18 E-value=0.92 Score=59.86 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=51.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
..|+..-||++||.+-.+|++|.-.|.|+++++.+|.-..... .|+++|++|.=+.|
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVD 1154 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCC
Confidence 4577889999999999999999999999999999998876665 99999999987766
No 323
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=87.10 E-value=0.27 Score=55.65 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccccccccc-C-----------CCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENES-S-----------SKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g-~-----------~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++-.|||.|+..|+.. -+. + .......||+|...-
T Consensus 18 ~~~CpICld~~~dP------VvT~CGH~FC~~CI~~-wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~I 78 (193)
T PLN03208 18 DFDCNICLDQVRDP------VVTLCGHLFCWPCIHK-WTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78 (193)
T ss_pred ccCCccCCCcCCCc------EEcCCCchhHHHHHHH-HHHhccccccccccccccCCCCcCCCCCCcC
Confidence 47899999865443 6679999999999952 110 0 011346899998643
No 324
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=86.97 E-value=0.28 Score=43.70 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=31.0
Q ss_pred CcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..|.+|.... ..+++++|||. |...|... ... ....||+|...
T Consensus 3 ~~C~iC~~~~------~~~~~~pCgH~~~C~~C~~~--~~~---~~~~CP~Cr~~ 46 (50)
T PF13920_consen 3 EECPICFENP------RDVVLLPCGHLCFCEECAER--LLK---RKKKCPICRQP 46 (50)
T ss_dssp SB-TTTSSSB------SSEEEETTCEEEEEHHHHHH--HHH---TTSBBTTTTBB
T ss_pred CCCccCCccC------CceEEeCCCChHHHHHHhHH--hcc---cCCCCCcCChh
Confidence 5799998752 23889999999 99999842 211 34789999864
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=86.93 E-value=1.8 Score=55.12 Aligned_cols=76 Identities=25% Similarity=0.389 Sum_probs=51.3
Q ss_pred ccCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecc-----cCCCCCCCeEEEEEc-----CCC--
Q 000170 442 RDHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL-----LGDRSPAPVTAMCFN-----QPG-- 508 (1950)
Q Consensus 442 ~~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~-----~~~~h~~~VtsLafS-----~DG-- 508 (1950)
.+.|.+||++.+. .|+|+|..+|.+.|.|+|.. ..++-.. ........||+|.|+ .|+
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP---------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP---------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT---------EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC---------eEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 4589999999986 89999999999999999742 1222111 112245679999997 344
Q ss_pred -CEEEEecCCCcEEEEECC
Q 000170 509 -DLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 509 -~~LasG~~dG~I~lWDl~ 526 (1950)
=+|.+|...|++.+|.+.
T Consensus 155 Si~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEETTSEEEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEe
Confidence 489999999999999874
No 326
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.36 E-value=5.5 Score=50.04 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=54.4
Q ss_pred CcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 446 SPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
.....++.+.+|.+++.+|.|..+|...+ + ..|..... ....+++..+ .|.+|.+|..+|.|.+||.
T Consensus 271 ~~~~p~~~~~~vyv~~~~G~l~~~d~~tG---------~-~~W~~~~~-~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 271 SYQGPAVDDNRLYVTDADGVVVALDRRSG---------S-ELWKNDEL-KYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CccCceEeCCEEEEECCCCeEEEEECCCC---------c-EEEccccc-cCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 33445566788999999999999998432 2 22321110 1112333333 4679999999999999999
Q ss_pred CCCceeeeeccCcCCC
Q 000170 526 QRASAAKVITGEHTSP 541 (1950)
Q Consensus 526 ~~g~~l~tl~~~H~~~ 541 (1950)
.+|+.+-.+. .|...
T Consensus 338 ~tG~~~~~~~-~~~~~ 352 (377)
T TIGR03300 338 EDGSFVARLK-TDGSG 352 (377)
T ss_pred CCCCEEEEEE-cCCCc
Confidence 9999987775 44433
No 327
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=86.30 E-value=2.2 Score=51.78 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=65.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC-----
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA----- 528 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g----- 528 (1950)
+-..++|++-+ |.+-|+.++. + +.+ ...+-|-++-|-.-+..|..|..+|.|...|+..+
T Consensus 225 gyhfs~G~sqq-v~L~nvetg~-~-------qsf------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~ 289 (425)
T KOG2695|consen 225 GYHFSVGLSQQ-VLLTNVETGH-Q-------QSF------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG 289 (425)
T ss_pred eeeecccccce-eEEEEeeccc-c-------ccc------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC
Confidence 33467887765 5555764431 0 112 13567999999888999999999999999999864
Q ss_pred ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceE
Q 000170 529 SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 529 ~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V 569 (1950)
-+.+.+ -|.++|+++.-.. ..+..++++|-.|.+
T Consensus 290 ~~a~rl--yh~Ssvtslq~Lq-----~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 290 WCAQRL--YHDSSVTSLQILQ-----FSQQKLMASDMTGKI 323 (425)
T ss_pred cceEEE--EcCcchhhhhhhc-----cccceEeeccCcCce
Confidence 355555 6999999998663 123467777887733
No 328
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.23 E-value=1.4 Score=55.94 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=63.7
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCC--cEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGS--PQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~--pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
|-+--++|+||+--.=-..|+-.++++-.+. -+|+|..+ .|||||+-+|.|++||. .+ ..+|+.+
T Consensus 400 GLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~------~~AKTAl----- 467 (644)
T KOG2395|consen 400 GLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IG------RRAKTAL----- 467 (644)
T ss_pred eecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hh------hhhhhcc-----
Confidence 4455568999875111112332233322222 27888876 79999999999999996 21 2334332
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
++...+|+-|..+.||+|+++-. +..+.|-|+.
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 44678999999999999988655 5666776664
No 329
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=85.90 E-value=5.7 Score=49.88 Aligned_cols=82 Identities=12% Similarity=0.263 Sum_probs=63.2
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
..+.|.+.++++++ +++++|..++.|.+.|+.. -+.+ . ......+-|+-.+|+|++.|+|=|.-+|
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-------gnv~--~---idkS~~~lItdf~~~~nsr~iAYafP~g 465 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-------GNVR--L---IDKSEYGLITDFDWHPNSRWIAYAFPEG 465 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-------CCee--E---ecccccceeEEEEEcCCceeEEEecCcc
Confidence 44788898888875 7899999999999999842 1222 1 1233568899999999999999765555
Q ss_pred ----cEEEEECCCCceeeee
Q 000170 519 ----HVTVWDVQRASAAKVI 534 (1950)
Q Consensus 519 ----~I~lWDl~~g~~l~tl 534 (1950)
+|+|+|+.+++....-
T Consensus 466 y~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 466 YYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred eeeeeEEEEecCCCeEEEec
Confidence 7999999999876443
No 330
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.80 E-value=0.28 Score=61.59 Aligned_cols=45 Identities=29% Similarity=0.570 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++..|||.|+..|+. +.+.. ...||+|...-
T Consensus 26 ~l~C~IC~d~~~~P------vitpCgH~FCs~CI~-~~l~~----~~~CP~Cr~~~ 70 (397)
T TIGR00599 26 SLRCHICKDFFDVP------VLTSCSHTFCSLCIR-RCLSN----QPKCPLCRAED 70 (397)
T ss_pred ccCCCcCchhhhCc------cCCCCCCchhHHHHH-HHHhC----CCCCCCCCCcc
Confidence 47899999877654 467999999999995 22221 24799998643
No 331
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.58 E-value=1.6 Score=52.69 Aligned_cols=97 Identities=24% Similarity=0.332 Sum_probs=63.2
Q ss_pred CChhHHHHhhhccccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC--------CCCCC
Q 000170 427 ANNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD--------RSPAP 498 (1950)
Q Consensus 427 ~~~~iS~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~--------~h~~~ 498 (1950)
.|.-+|.-|++++|-... -+.++-.+|+|.|++-|++++. -.|.. .+ ++ ..+.+ .--++
T Consensus 208 nmEeLteVITsaEFhp~~---------cn~f~YSSSKGtIrLcDmR~~a-LCd~h-sK-lf-Eepedp~~rsffseiIsS 274 (433)
T KOG1354|consen 208 NMEELTEVITSAEFHPHH---------CNVFVYSSSKGTIRLCDMRQSA-LCDAH-SK-LF-EEPEDPSSRSFFSEIISS 274 (433)
T ss_pred CHHHHHHHHhhhccCHhH---------ccEEEEecCCCcEEEeechhhh-hhcch-hh-hh-ccccCCcchhhHHHHhhh
Confidence 456678888888773211 1567888999999999997532 00110 01 11 11111 12468
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEEECC-CCceeeeeccCc
Q 000170 499 VTAMCFNQPGDLLLAGYADGHVTVWDVQ-RASAAKVITGEH 538 (1950)
Q Consensus 499 VtsLafS~DG~~LasG~~dG~I~lWDl~-~g~~l~tl~~~H 538 (1950)
|+-+.||+.|.|+++-.- -+|++||++ ..+.+.++. .|
T Consensus 275 ISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~-vh 313 (433)
T KOG1354|consen 275 ISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-VH 313 (433)
T ss_pred hhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe-eh
Confidence 999999999999998763 689999995 455666664 55
No 332
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=85.43 E-value=8.1 Score=48.45 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=52.8
Q ss_pred EEEcCCEEEEEeC----------CCcEEEEeCCCCCCccCcccceeeeecccCCC-C---CCCeEEEEEcCCCCEEEEec
Q 000170 450 LAVHPSFIAVGMS----------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDR-S---PAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 450 ia~s~~~IAvGts----------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~-h---~~~VtsLafS~DG~~LasG~ 515 (1950)
++++++.|.++.+ ++.|.+||.+.. .....+.+ +.+ + ...-..+++|+||++|.+..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~------~~~~~i~~---p~~p~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH------LPIADIEL---PEGPRFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC------cEEeEEcc---CCCchhhccCccceEEECCCCCEEEEec
Confidence 6666677777766 789999998542 11111211 111 1 12344789999999999766
Q ss_pred -C-CCcEEEEECCCCceeeeec
Q 000170 516 -A-DGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 516 -~-dG~I~lWDl~~g~~l~tl~ 535 (1950)
. ++.|.++|+.+++.+..+.
T Consensus 124 ~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 124 FSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CCCCCEEEEEECCCCcEEEEEe
Confidence 4 7999999999999998775
No 333
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.35 E-value=0.74 Score=55.93 Aligned_cols=49 Identities=22% Similarity=0.576 Sum_probs=37.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
...|..||+.+...+ ..+-..+|.|.||.+|+. +.+.++ ....||.|.+
T Consensus 365 ~L~Cg~CGe~~Glk~--e~LqALpCsHIfH~rCl~-e~L~~n--~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKN--ERLQALPCSHIFHLRCLQ-EILENN--GTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCc--ccccccchhHHHHHHHHH-HHHHhC--CCCCCccHHH
Confidence 568999999998653 457788999999999996 223222 2468999984
No 334
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=84.85 E-value=1.8 Score=51.98 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEE-EecCCCcEEE
Q 000170 444 HGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLL-AGYADGHVTV 522 (1950)
Q Consensus 444 ~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~La-sG~~dG~I~l 522 (1950)
.|.+.|+.+.|+|||+...- .++|=|..+ -+..++++. -..|.-|-|+.|.-+++ +.|.+|.|.+
T Consensus 10 ~~~~c~fSp~g~yiAs~~~y-rlviRd~~t-------lq~~qlf~c------ldki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 10 LNPFCSFSPCGNYIASLSRY-RLVIRDSET-------LQLHQLFLC------LDKIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred cCCceeECCCCCeeeeeeee-EEEEeccch-------hhHHHHHHH------HHHhhheeeeccceeeeeeeeccceEEE
Confidence 45578899999999998544 788877532 111111111 23577778888877654 5599999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe-cCCceEEEEc
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHS 573 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ 573 (1950)
|++...+=...+. .-..++.++.|+|| +||.+.-+. |.+..||..+
T Consensus 76 wsl~Qpew~ckId-eg~agls~~~WSPd----grhiL~tseF~lriTVWSL~ 122 (447)
T KOG4497|consen 76 WSLVQPEWYCKID-EGQAGLSSISWSPD----GRHILLTSEFDLRITVWSLN 122 (447)
T ss_pred EEeecceeEEEec-cCCCcceeeeECCC----cceEeeeecceeEEEEEEec
Confidence 9999888666674 44689999999998 477665554 5566666665
No 335
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.81 E-value=2 Score=53.97 Aligned_cols=106 Identities=12% Similarity=0.129 Sum_probs=68.2
Q ss_pred eEEecCChh-HHHHhhhccccccCCC-cEEEEE-cC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC
Q 000170 422 YFDVDANNT-ITQTIASQAFRRDHGS-PQVLAV-HP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA 497 (1950)
Q Consensus 422 ~~~~~~~~~-iS~~i~s~~f~~~~G~-pt~ia~-s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~ 497 (1950)
+-.||+..+ .-.|+-. +-|..+|. +.|+-- +. -.||..+...+|++||.+...-. -+. .+| ...+.++
T Consensus 806 iHlWDPFigr~Laq~~d-apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~---~E~-kVc---na~~Pna 877 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMED-APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT---CEL-KVC---NAPGPNA 877 (1034)
T ss_pred ceeecccccchhHhhhc-CcccCCCceeEecccCcchheeeeccchhhheeeecccccce---eeE-Eec---cCCCCch
Confidence 445665422 2233322 23333333 455533 22 35666689999999998642100 011 111 2345678
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 498 ~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
-++||+.-+-|.+||+|-.+|+|.+.|..+|+++....
T Consensus 878 ~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 878 LTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred heeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 89999999999999999999999999999999886653
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.76 E-value=9.5 Score=46.99 Aligned_cols=115 Identities=22% Similarity=0.237 Sum_probs=74.1
Q ss_pred ceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC
Q 000170 418 TTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA 497 (1950)
Q Consensus 418 ~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~ 497 (1950)
..+.++.|+.-. ++..-++....-.++++.+.+++|++|+...-|.++.+.. ++.... .++ .+...-
T Consensus 107 ~~l~v~~l~~~~----~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~-----~~~~l~--~va--~d~~~~ 173 (321)
T PF03178_consen 107 NKLYVYDLDNSK----TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE-----ENNKLI--LVA--RDYQPR 173 (321)
T ss_dssp TEEEEEEEETTS----SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET-----TTE-EE--EEE--EESS-B
T ss_pred CEEEEEEccCcc----cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc-----cCCEEE--EEE--ecCCCc
Confidence 556677776666 5555556555558899999999999999988888886532 111111 221 122355
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEEECCC-------Cc-eeeeeccCc-CCCeEEE
Q 000170 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQR-------AS-AAKVITGEH-TSPVVHT 545 (1950)
Q Consensus 498 ~VtsLafS~DG~~LasG~~dG~I~lWDl~~-------g~-~l~tl~~~H-~~~I~~v 545 (1950)
+|++++|=.|++.+++|..+|.|.++.... +. .+.....-| ...|+++
T Consensus 174 ~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~ 230 (321)
T PF03178_consen 174 WVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSF 230 (321)
T ss_dssp EEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEE
T ss_pred cEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceE
Confidence 699999987778999999999999999873 22 333333334 4566666
No 337
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.71 E-value=2.4 Score=49.17 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEE-EEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTA-MCFNQPGDLLLAGYADGHVTVWDVQRASAAK 532 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~Vts-LafS~DG~~LasG~~dG~I~lWDl~~g~~l~ 532 (1950)
+.-+++||++|.|.+|++... ++-....+. + -.+|-+ |.--.++.+..+|..||.|+.|+++-++.+-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s---~---~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g 138 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCS---G---EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLG 138 (238)
T ss_pred CceEEeecccceEEEecCCcc-----chHHHhhhc---c---cccceeccccccccceeEEeccCCceeeeccccCceee
Confidence 367999999999999987321 110011111 1 122333 2333567799999999999999999888876
Q ss_pred eeccCcC-CCeEEEEEecCCCccCCceEEEEecCCceEE--EEcccccccccc
Q 000170 533 VITGEHT-SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ--LHSLSVVPLLNR 582 (1950)
Q Consensus 533 tl~~~H~-~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~--~h~ft~~rl~~~ 582 (1950)
.. +.|+ .++.. .+++++|.--.++ .|.- +.+.|++
T Consensus 139 ~~-g~h~~~~~e~-------------~ivv~sd~~i~~a~~S~d~-~~k~W~v 176 (238)
T KOG2444|consen 139 YV-GQHNFESGEE-------------LIVVGSDEFLKIADTSHDR-VLKKWNV 176 (238)
T ss_pred ee-ccccCCCcce-------------eEEecCCceEEeeccccch-hhhhcch
Confidence 55 3676 33333 3344444443333 3443 4778875
No 338
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=84.64 E-value=20 Score=44.35 Aligned_cols=110 Identities=22% Similarity=0.349 Sum_probs=69.0
Q ss_pred HHhhhccccccCCCcEEEEEcC--CEEEEEeC---CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC
Q 000170 433 QTIASQAFRRDHGSPQVLAVHP--SFIAVGMS---KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP 507 (1950)
Q Consensus 433 ~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts---~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D 507 (1950)
..+.....-..-|.||-+++++ +++-++-. .|.|.-|.+ |..+++...+.... ....+-+-|++++|
T Consensus 28 g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~ 99 (346)
T COG2706 28 GELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------DPDDGRLTFLNRQT-LPGSPPCYVSVDED 99 (346)
T ss_pred cccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------cCCCCeEEEeeccc-cCCCCCeEEEECCC
Confidence 3444445555788999999997 34555433 588998877 22223322332111 12223389999999
Q ss_pred CCEEEEe-cCCCcEEEEECCC-Cceeeeec-cCcCCC----------eEEEEEecC
Q 000170 508 GDLLLAG-YADGHVTVWDVQR-ASAAKVIT-GEHTSP----------VVHTLFLGQ 550 (1950)
Q Consensus 508 G~~LasG-~~dG~I~lWDl~~-g~~l~tl~-~~H~~~----------I~~v~F~~d 550 (1950)
|++|.++ |..|.|.++-++. |.+...+. ..|..+ +-.+.|+|+
T Consensus 100 g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 100 GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 9988776 8889999999976 55432211 134333 778888887
No 339
>PHA02926 zinc finger-like protein; Provisional
Probab=84.41 E-value=0.44 Score=54.56 Aligned_cols=58 Identities=17% Similarity=0.409 Sum_probs=36.1
Q ss_pred cCCCcccccccccccCCC-C--CeEEEecCCCccccccccc-ccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNSS-S--FQIRVFNCGHATHIQCELL-ENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~-~--~~ivVF~CGHafH~~CL~~-en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.+...|++|-..++.... + .-=+.-.|+|.|+..|+.. ....+..+....||+|...-
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f 229 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRF 229 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCccee
Confidence 346899999988765321 0 1125558999999999962 11001112346799998643
No 340
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.33 E-value=0.13 Score=63.71 Aligned_cols=57 Identities=25% Similarity=0.398 Sum_probs=39.6
Q ss_pred cCccccCCCcccccccccccCC-----------CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1748 SHGYAPRSLLCCICNCLLTKNS-----------SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1748 ~rG~~p~s~~C~iC~k~L~~~~-----------~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
..|..-+...|.+|-.++..-. ......+-+|.|.||..|+. +-|. +.+..||+|..
T Consensus 564 ~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~-~WMd---~ykl~CPvCR~ 631 (636)
T KOG0828|consen 564 LEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLL-QWMD---TYKLICPVCRC 631 (636)
T ss_pred ccchhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHH-HHHh---hhcccCCccCC
Confidence 4567777899999999886321 11236677999999999994 2221 12358999975
No 341
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.91 E-value=4 Score=54.15 Aligned_cols=86 Identities=12% Similarity=0.222 Sum_probs=52.4
Q ss_pred EEEEE---cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeeccc----------------CCCCCCCeEEEEEcC--
Q 000170 448 QVLAV---HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLL----------------GDRSPAPVTAMCFNQ-- 506 (1950)
Q Consensus 448 t~ia~---s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~----------------~~~h~~~VtsLafS~-- 506 (1950)
...++ ++..+++++.+|.++.+...... .+............ .....+.+.+++++.
T Consensus 149 ~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (547)
T PF11715_consen 149 RLAAVTHDSEANLVVSLQDGGLLRLKRSSGD--SDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSE 226 (547)
T ss_dssp EEEEE---SSSBEEEEESSS-EEEEEES------SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE----
T ss_pred eEEEEEecCCCEEEEEECCCCeEEEECCccc--CCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecce
Confidence 44455 77899999999999999874200 00000000000000 011235677888887
Q ss_pred --CCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 507 --PGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 507 --DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
+.++|++-+.|+++|+||+.+++++++..
T Consensus 227 ~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 227 INDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 88999999999999999999999987774
No 342
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=83.75 E-value=0.38 Score=56.20 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=35.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|-||...|..+ +.-.|||+|..-|+.. -+| ....||+|...
T Consensus 25 ~lrC~IC~~~i~ip------~~TtCgHtFCslCIR~-hL~----~qp~CP~Cr~~ 68 (391)
T COG5432 25 MLRCRICDCRISIP------CETTCGHTFCSLCIRR-HLG----TQPFCPVCRED 68 (391)
T ss_pred HHHhhhhhheeecc------eecccccchhHHHHHH-Hhc----CCCCCcccccc
Confidence 47899999988776 5678999999999963 333 46899999763
No 343
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.51 E-value=0.59 Score=43.23 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=32.2
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..|.+|++.+..+ ++..|||.|...|+.. -... ...||+|...
T Consensus 2 ~~Cpi~~~~~~~P------v~~~~G~v~~~~~i~~-~~~~----~~~cP~~~~~ 44 (63)
T smart00504 2 FLCPISLEVMKDP------VILPSGQTYERRAIEK-WLLS----HGTDPVTGQP 44 (63)
T ss_pred cCCcCCCCcCCCC------EECCCCCEEeHHHHHH-HHHH----CCCCCCCcCC
Confidence 4699999988765 5679999999999952 2211 3579999754
No 344
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.41 E-value=0.36 Score=63.85 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=39.5
Q ss_pred CccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1749 HGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1749 rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
++.+.....|.+|...|..... -....-.|||+||..|+.. +......||+|..
T Consensus 285 ~~~~~~~~~C~IC~e~l~~~~~-~~~~rL~C~Hifh~~CL~~-----W~er~qtCP~CR~ 338 (543)
T KOG0802|consen 285 RGLALSDELCIICLEELHSGHN-ITPKRLPCGHIFHDSCLRS-----WFERQQTCPTCRT 338 (543)
T ss_pred hhhhhcCCeeeeechhhccccc-cccceeecccchHHHHHHH-----HHHHhCcCCcchh
Confidence 3455557899999999887431 3456789999999999962 1112478999986
No 345
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.39 E-value=0.37 Score=53.32 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=30.1
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
..|.+|-.+..... .+--+|||.|...|+.. ... ....||+|..
T Consensus 132 ~~CPiCl~~~sek~----~vsTkCGHvFC~~Cik~-alk----~~~~CP~C~k 175 (187)
T KOG0320|consen 132 YKCPICLDSVSEKV----PVSTKCGHVFCSQCIKD-ALK----NTNKCPTCRK 175 (187)
T ss_pred cCCCceecchhhcc----ccccccchhHHHHHHHH-HHH----hCCCCCCccc
Confidence 56777776655541 23379999999999952 221 2468999986
No 346
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=82.04 E-value=1 Score=59.81 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=31.3
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
-.|.+|+ .=|++ .|+-.|||+|...|+... .+- ..-.||.|..
T Consensus 644 LkCs~Cn-~R~Kd-----~vI~kC~H~FC~~Cvq~r-~et---RqRKCP~Cn~ 686 (698)
T KOG0978|consen 644 LKCSVCN-TRWKD-----AVITKCGHVFCEECVQTR-YET---RQRKCPKCNA 686 (698)
T ss_pred eeCCCcc-Cchhh-----HHHHhcchHHHHHHHHHH-HHH---hcCCCCCCCC
Confidence 5799999 33443 788999999999998521 111 2368999985
No 347
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=81.80 E-value=21 Score=51.32 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=53.2
Q ss_pred CCCcEEEEEcC--CEE-EEEeCCCcEEEEeCCCCCCccCcccceeeeecc----------cC--CC-----CCCCeEEEE
Q 000170 444 HGSPQVLAVHP--SFI-AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL----------LG--DR-----SPAPVTAMC 503 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~I-AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~----------~~--~~-----h~~~VtsLa 503 (1950)
+..|+.|++++ ++| ++.+.++.|++||...+. ..+..+. .+ ++ .-..-..|+
T Consensus 739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~--------~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 739 FAQPSGISLSPDLKELYIADSESSSIRALDLKTGG--------SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred ccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc--------EEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 45688888875 434 445567899999985320 0111100 00 00 011235899
Q ss_pred EcCCCCEEEEecCCCcEEEEECCCCceee
Q 000170 504 FNQPGDLLLAGYADGHVTVWDVQRASAAK 532 (1950)
Q Consensus 504 fS~DG~~LasG~~dG~I~lWDl~~g~~l~ 532 (1950)
|++||...++-+.++.|++||..++.+..
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 99999999999999999999999887653
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=81.44 E-value=8.1 Score=40.50 Aligned_cols=72 Identities=28% Similarity=0.278 Sum_probs=51.2
Q ss_pred eEEEEEcC-CC---CEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 499 VTAMCFNQ-PG---DLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 499 VtsLafS~-DG---~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|+|||+.. || .-|++|+.|..|++|+=. ..+..++ .+.+|++++-.+. ....-+=..|.|=.+.-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~-------~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGG-------GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCC-------CEEEEEecCCEEEEEeC
Confidence 77888754 33 589999999999999854 4544443 3578999988864 23555556777777765
Q ss_pred cccccccc
Q 000170 575 SVVPLLNR 582 (1950)
Q Consensus 575 t~~rl~~~ 582 (1950)
+ .|+|+.
T Consensus 71 ~-~RlWRi 77 (111)
T PF14783_consen 71 S-QRLWRI 77 (111)
T ss_pred c-ceeeee
Confidence 4 788963
No 349
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=80.67 E-value=25 Score=44.27 Aligned_cols=110 Identities=7% Similarity=0.015 Sum_probs=68.2
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC---C-CCCCeEEEEEcCCCCEEEE-ecCC---------C
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD---R-SPAPVTAMCFNQPGDLLLA-GYAD---------G 518 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~---~-h~~~VtsLafS~DG~~Las-G~~d---------G 518 (1950)
++.++-+... |.|.+.|+.... -...+.+-.-.... + .-+.+.-+++++||.+|-+ .+.. +
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~----~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGD----AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCc----ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 5666666655 999999963210 00011111000010 0 2234555999999998888 4322 4
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.|.++|+.+++++..+..|+ .+++++|++|+ +..+.++.-..|.|..+.
T Consensus 280 ~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dg----kp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIELGH--EIDSINVSQDA----KPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEEECCCCeEEEEEeCCC--ceeeEEECCCC----CeEEEEeCCCCCcEEEEE
Confidence 79999999999999887555 89999999983 324555544555555554
No 350
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=0.66 Score=55.01 Aligned_cols=52 Identities=27% Similarity=0.435 Sum_probs=38.0
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCcc
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQ 1813 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~ 1813 (1950)
.......|.+|-.....++ .-.|||.|.-.|+.+ +.++...||+|..+...+
T Consensus 235 i~~a~~kC~LCLe~~~~pS------aTpCGHiFCWsCI~~-----w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPS------ATPCGHIFCWSCILE-----WCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCCCCC------cCcCcchHHHHHHHH-----HHccccCCCcccccCCCc
Confidence 3344689999998776664 358999999999952 223457899999766443
No 351
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=80.53 E-value=3.2 Score=50.39 Aligned_cols=101 Identities=19% Similarity=0.271 Sum_probs=75.1
Q ss_pred ccccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec
Q 000170 412 GVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG 489 (1950)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~ 489 (1950)
|...|+-.+.-+..+..+.|+ .|+...|.++|++=.+ ..+.+|.++..|.+||+..+ .....
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~------~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-------~g~~~--- 234 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLIT------TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-------KGTAY--- 234 (404)
T ss_pred cccccceEEEEEeecCCceEE------EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC-------cceee---
Confidence 444455555555565666555 3566778888888876 68999999999999998432 11111
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc
Q 000170 490 LLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS 529 (1950)
Q Consensus 490 ~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~ 529 (1950)
...+|...|++++.-+--..|.+...||.|.+||++...
T Consensus 235 -el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 235 -ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred -eeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 234588999999998888999999999999999998543
No 352
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=80.45 E-value=15 Score=46.70 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=50.9
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
..+.+..+++.+..|.+++.+|.|..+|.+.+ + ..|...... ....++..+ .+.+|..|..+|.|..
T Consensus 283 ~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG---------~-~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 283 EYGSVNDFAVDGGRIYLVDQNDRVYALDTRGG---------V-ELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred cCCCccCcEEECCEEEEEcCCCeEEEEECCCC---------c-EEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEE
Confidence 34454455667788999999999999998532 2 233211101 111222222 2567788999999999
Q ss_pred EECCCCceeeee
Q 000170 523 WDVQRASAAKVI 534 (1950)
Q Consensus 523 WDl~~g~~l~tl 534 (1950)
.|..+|+.+-..
T Consensus 350 ld~~tG~~~~~~ 361 (394)
T PRK11138 350 INREDGRFVAQQ 361 (394)
T ss_pred EECCCCCEEEEE
Confidence 999999986554
No 353
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.71 E-value=4 Score=35.57 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCeEEEEEcCC-C--CEEEEecCCCcEEEEECCCC
Q 000170 497 APVTAMCFNQP-G--DLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 497 ~~VtsLafS~D-G--~~LasG~~dG~I~lWDl~~g 528 (1950)
|+|.++.|||+ + ..||-.-..|.|.|||+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 68999999975 4 59999999999999999853
No 354
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=79.70 E-value=26 Score=41.21 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred cCCCcEEEEEcC--CEE-EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP--SFI-AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~I-AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
....|.-|++++ +.+ ++-+..+.|..|++...... ...+.... ......+..--|++..+|...++.+..|.
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~---~~~~~~~~--~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE---LSNRRVFI--DFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC---EEEEEEEE--E-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred CcccccceEECCcchheeecccccceeEEEeccccccc---eeeeeeEE--EcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 466688888875 555 45677888999987321000 00011121 12222355888999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
|..+|-. |+.+..+... ...+++++|-+.+ ...+.|++
T Consensus 207 I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~----~~~L~vTt 244 (246)
T PF08450_consen 207 IVVFDPD-GKLLREIELP-VPRPTNCAFGGPD----GKTLYVTT 244 (246)
T ss_dssp EEEEETT-SCEEEEEE-S-SSSEEEEEEESTT----SSEEEEEE
T ss_pred EEEECCC-ccEEEEEcCC-CCCEEEEEEECCC----CCEEEEEe
Confidence 9999987 9988888644 4589999997542 45666654
No 355
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=79.26 E-value=8 Score=55.31 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=55.7
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC----------CCCCCeEEEEEcCCCCEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD----------RSPAPVTAMCFNQPGDLL 511 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~----------~h~~~VtsLafS~DG~~L 511 (1950)
+..|..+++++ +.+++-+.++.|++||...+ ........+. ..-...+.|++++||+.+
T Consensus 803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg---------~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK---------RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred ccCCceeeEeCCCcEEEEECCCCEEEEEECCCC---------eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 44688888765 56677788999999997431 1111111111 122357899999999999
Q ss_pred EEecCCCcEEEEECCCCce
Q 000170 512 LAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 512 asG~~dG~I~lWDl~~g~~ 530 (1950)
++-..++.|++||+.+++.
T Consensus 874 VaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCcc
Confidence 9999999999999998875
No 356
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=78.71 E-value=1.5e+02 Score=35.32 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=43.2
Q ss_pred eeEEEEEcCeeEEEEeee--cce-eEeeEEeccccceeeeeccCCeEEEEeecCeEEEEecC
Q 000170 720 SLLAIAWDRKVQVAKLVK--SEL-KVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYLYARD 778 (1950)
Q Consensus 720 ~~LA~aWgn~l~vl~~~k--~~~-~~~~~~~~~~~I~~l~WLs~~iL~vLt~s~~L~l~d~~ 778 (1950)
..|+++-.+.+.+++... ..| ...++..+++++.++.|+++. ++|-+ +..+.++|.+
T Consensus 106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~-i~v~~-~~~f~~idl~ 165 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNK-ICVGT-SKGFYLIDLN 165 (275)
T ss_pred eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCE-EEEEe-CCceEEEecC
Confidence 468888888888888765 356 788899999999999999554 44444 5568888864
No 357
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=78.68 E-value=25 Score=43.92 Aligned_cols=119 Identities=17% Similarity=0.192 Sum_probs=69.8
Q ss_pred ccCCCcEEEEEc--CCEEEEEeC----CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-
Q 000170 442 RDHGSPQVLAVH--PSFIAVGMS----KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG- 514 (1950)
Q Consensus 442 ~~~G~pt~ia~s--~~~IAvGts----~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG- 514 (1950)
...+.|+.++++ +++|.+.+. .|.|..|.+.. .++....+. ........-..|++++||++|+++
T Consensus 34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~-------~~g~L~~~~-~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP-------DTGTLTLLN-SVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET-------TTTEEEEEE-EEEESSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC-------CcceeEEee-eeccCCCCcEEEEEecCCCEEEEEE
Confidence 356778888885 467777665 67999998731 111111211 111123455679999999988877
Q ss_pred cCCCcEEEEECCC-Cceeeeec-cCc-----------CCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 515 YADGHVTVWDVQR-ASAAKVIT-GEH-----------TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 515 ~~dG~I~lWDl~~-g~~l~tl~-~~H-----------~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|.+|+|.++++.. |....... -.| .....++.|+|+ ++.+.++.--...|+.+.
T Consensus 106 y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-----g~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 106 YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-----GRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT-----SSEEEEEETTTTEEEEEE
T ss_pred ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC-----CCEEEEEecCCCEEEEEE
Confidence 6899999999987 55433210 011 245678899987 344554432222344443
No 358
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.48 E-value=9.6 Score=47.40 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=62.3
Q ss_pred cEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCcEEE
Q 000170 447 PQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGHVTV 522 (1950)
Q Consensus 447 pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~I~l 522 (1950)
+.-++.++ .++.+++-+.+|.|+|+... +.... -. ...++++.||.-| ..++-+|..+|.|.+
T Consensus 196 IrdlafSp~~~GLl~~asl~nkiki~dlet~----------~~vss--y~-a~~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLGNKIKIMDLETS----------CVVSS--YI-AYNQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred hhhhccCccccceeeeeccCceEEEEecccc----------eeeeh--ee-ccCCceeeeeccCCcceeEEeccCceEEE
Confidence 45566665 36888888889999998541 12211 11 2378999999876 458899999999999
Q ss_pred EECCCCcee-eeecc-CcCCCeEEEEEecC
Q 000170 523 WDVQRASAA-KVITG-EHTSPVVHTLFLGQ 550 (1950)
Q Consensus 523 WDl~~g~~l-~tl~~-~H~~~I~~v~F~~d 550 (1950)
||+...+-. ..+.. --..+|.+|+..+.
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~ 292 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQP 292 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCc
Confidence 999876532 22221 12468888887753
No 359
>PRK04043 tolB translocation protein TolB; Provisional
Probab=77.98 E-value=17 Score=46.79 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=60.1
Q ss_pred EEEcCCE-EEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC---CCcEEE
Q 000170 450 LAVHPSF-IAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA---DGHVTV 522 (1950)
Q Consensus 450 ia~s~~~-IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~---dG~I~l 522 (1950)
..++++. ++..+.+ ..|.++|...+ ..+ .+. ...+.+.+.+|||||+.|+.... ++.|.+
T Consensus 195 wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg-------~~~--~lt----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 195 WANKEQTAFYYTSYGERKPTLYKYNLYTG-------KKE--KIA----SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred ECCCCCcEEEEEEccCCCCEEEEEECCCC-------cEE--EEe----cCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 4455554 6654333 45888887432 111 221 13456778889999998875432 457999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
+|+.+++. +.++ .+........|+|| +..++.++|..|.
T Consensus 262 ~dl~~g~~-~~LT-~~~~~d~~p~~SPD-----G~~I~F~Sdr~g~ 300 (419)
T PRK04043 262 YDTNTKTL-TQIT-NYPGIDVNGNFVED-----DKRIVFVSDRLGY 300 (419)
T ss_pred EECCCCcE-EEcc-cCCCccCccEECCC-----CCEEEEEECCCCC
Confidence 99988874 3444 23333445679998 4567777776653
No 360
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.89 E-value=1.4e+02 Score=42.35 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=59.3
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCC--cEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeeccc
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGS--PQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLL 491 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~--pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~ 491 (1950)
+.+-+..+.++...+ ..+-...|...-|. ++++.... .-|++++..|.|++-|... . ..-+.
T Consensus 40 ~~~~~~~~ei~~~~k--v~~~~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et-------~--~~eiv--- 105 (1265)
T KOG1920|consen 40 ELLGLKIFEIESVGK--VRLVAESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPET-------L--ELEIV--- 105 (1265)
T ss_pred ecccccceeeecccc--ccceeecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcccc-------c--ceeee---
Confidence 334445556655555 12223445444444 56555543 6699999999999998732 1 11121
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 492 GDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 492 ~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
+ .-.+.|.+++||||+++||--..++++.+-
T Consensus 106 g-~vd~GI~aaswS~Dee~l~liT~~~tll~m 136 (1265)
T KOG1920|consen 106 G-NVDNGISAASWSPDEELLALITGRQTLLFM 136 (1265)
T ss_pred e-eccCceEEEeecCCCcEEEEEeCCcEEEEE
Confidence 1 124569999999999999999888887653
No 361
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.69 E-value=1.1 Score=55.89 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=28.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
-..|.+|-.++.... ..++--.|.|+||-.|+.
T Consensus 175 LPTCpVCLERMD~s~--~gi~t~~c~Hsfh~~cl~ 207 (493)
T KOG0804|consen 175 LPTCPVCLERMDSST--TGILTILCNHSFHCSCLM 207 (493)
T ss_pred CCCcchhHhhcCccc--cceeeeecccccchHHHh
Confidence 468999999998753 468889999999999986
No 362
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.64 E-value=66 Score=40.21 Aligned_cols=145 Identities=18% Similarity=0.247 Sum_probs=82.4
Q ss_pred CcceeeeEEecCC-hhHHHHhhhccccccCCCcEEEEEc--CCEEEEEe-CCCcEEEEeCCCCCCccCcccceee-eecc
Q 000170 416 GSTTLGYFDVDAN-NTITQTIASQAFRRDHGSPQVLAVH--PSFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMM-MLGL 490 (1950)
Q Consensus 416 ~~~~~~~~~~~~~-~~iS~~i~s~~f~~~~G~pt~ia~s--~~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~-~l~~ 490 (1950)
....+..+.+++. ..++ .+++. ...-+.|..++++ +.+|+++. ..|.|.+|++... ..-.... ....
T Consensus 60 ~~g~v~~~~i~~~~g~L~-~~~~~--~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-----g~l~~~~~~~~~ 131 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLT-LLNSV--PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-----GSLGEVVQTVRH 131 (345)
T ss_dssp TTTEEEEEEEETTTTEEE-EEEEE--EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SEEEEEEEEEES
T ss_pred CCCCEEEEEECCCcceeE-Eeeee--ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-----cccceeeeeccc
Confidence 3445556666554 2222 12211 1134557788885 47888876 5899999998531 1101110 1100
Q ss_pred c--C----CCCCCCeEEEEEcCCCCEEEEec-CCCcEEEEECCCCc--ee--eeeccCcCCCeEEEEEecCCCccCCceE
Q 000170 491 L--G----DRSPAPVTAMCFNQPGDLLLAGY-ADGHVTVWDVQRAS--AA--KVITGEHTSPVVHTLFLGQDSQVTRQFK 559 (1950)
Q Consensus 491 ~--~----~~h~~~VtsLafS~DG~~LasG~-~dG~I~lWDl~~g~--~l--~tl~~~H~~~I~~v~F~~d~~~~~~~~~ 559 (1950)
. + ........++.|+|||++|.+.. ....|.+|++.... .. ..+.-.....=.|++|+++ +..+
T Consensus 132 ~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pd-----g~~~ 206 (345)
T PF10282_consen 132 EGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPD-----GKYA 206 (345)
T ss_dssp EEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TT-----SSEE
T ss_pred CCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCC-----cCEE
Confidence 0 1 12345688999999999888754 34569999997765 32 2333234567789999997 4556
Q ss_pred EEEecCCceEEEEc
Q 000170 560 AVTGDTKGLVQLHS 573 (1950)
Q Consensus 560 ~vssD~~G~V~~h~ 573 (1950)
-+.....+.|....
T Consensus 207 Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 207 YVVNELSNTVSVFD 220 (345)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEecCCCCcEEEEe
Confidence 66666666565554
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.34 E-value=10 Score=48.64 Aligned_cols=94 Identities=13% Similarity=0.236 Sum_probs=64.6
Q ss_pred EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCC--CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 458 AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDR--SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 458 AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~--h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.+|-++..|.=||.+.. +.. .+.+ .++.. ....-.|.+=..+| ++|+|+.+|.|+|||- .|...+|.-
T Consensus 398 lvGLs~n~vfriDpRv~-----~~~--kl~~-~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAl 467 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQ-----GKN--KLAV-VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTAL 467 (644)
T ss_pred EEeecCCceEEeccccc-----Ccc--eeee-eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcc
Confidence 56888889999998641 111 1211 12211 11234555544555 6899999999999998 787777776
Q ss_pred cCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 536 GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 536 ~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
.|-..+|+||.-+.+ +..++.+++.-
T Consensus 468 PgLG~~I~hVdvtad-----GKwil~Tc~ty 493 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTAD-----GKWILATCKTY 493 (644)
T ss_pred cccCCceeeEEeecc-----CcEEEEecccE
Confidence 688999999998876 45777777775
No 364
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=76.29 E-value=9.4 Score=51.47 Aligned_cols=120 Identities=15% Similarity=0.160 Sum_probs=76.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCCC-----ccCcccc-eeeeecccC-CCCCCCeEEEEEc--CCCCEEEEecCCCcEEEEEC
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAH-----HRDSMDS-KMMMLGLLG-DRSPAPVTAMCFN--QPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~-----~~d~~~~-k~~~l~~~~-~~h~~~VtsLafS--~DG~~LasG~~dG~I~lWDl 525 (1950)
..|++++.+|.|.+|..+.=.. ..+.... ......+.. .....++|.||+. ...+++|+|+....|.||-.
T Consensus 115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAF 194 (717)
T ss_pred eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEE
Confidence 5789999999999996421000 0000000 000000000 1234589999998 88999999999999999877
Q ss_pred CCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 526 QRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 526 ~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.... ....-...|..-|-+|.|.+++--+.++..++++|=.|.||...|
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6531 111101135567999999987533345568889999999999887
No 365
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=76.21 E-value=4.6 Score=48.24 Aligned_cols=100 Identities=24% Similarity=0.338 Sum_probs=65.4
Q ss_pred EecCChhHHHHhhhccccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC------CCCCC
Q 000170 424 DVDANNTITQTIASQAFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG------DRSPA 497 (1950)
Q Consensus 424 ~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~------~~h~~ 497 (1950)
+-..|..++.-|+|+.|-.. .| ..+.-.+++|.|.+-|++++. -.++.. +..-+...+ ++..+
T Consensus 213 KP~nmeeLteVItSaeFhp~----~c-----n~fmYSsSkG~Ikl~DlRq~a-lcdn~~-klfe~~~D~v~~~ff~eivs 281 (460)
T COG5170 213 KPHNMEELTEVITSAEFHPE----MC-----NVFMYSSSKGEIKLNDLRQSA-LCDNSK-KLFELTIDGVDVDFFEEIVS 281 (460)
T ss_pred cCccHHHHHHHHhhcccCHh----Hc-----ceEEEecCCCcEEehhhhhhh-hccCch-hhhhhccCcccchhHHHHhh
Confidence 34567778899998887321 11 456778899999999998542 111110 100000011 11356
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEEECCCC-ceeeeec
Q 000170 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQRA-SAAKVIT 535 (1950)
Q Consensus 498 ~VtsLafS~DG~~LasG~~dG~I~lWDl~~g-~~l~tl~ 535 (1950)
+|+-+.||+.|.|+++-+- -+|+|||++.. .+++|+.
T Consensus 282 SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 282 SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 8999999999999998764 68999999865 4778874
No 366
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.18 E-value=1.3 Score=53.68 Aligned_cols=49 Identities=27% Similarity=0.436 Sum_probs=32.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
...|.+|.......+ .-.+.|..|||.|...|+.. .... ....||.|..
T Consensus 3 ~~~CP~Ck~~~y~np-~~kl~i~~CGH~~C~sCv~~-l~~~---~~~~CP~C~~ 51 (309)
T TIGR00570 3 DQGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDL-LFVR---GSGSCPECDT 51 (309)
T ss_pred CCCCCcCCCCCccCc-ccccccCCCCCcccHHHHHH-HhcC---CCCCCCCCCC
Confidence 357999997554432 12344558999999999952 2211 2358999965
No 367
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=76.05 E-value=8.9 Score=49.07 Aligned_cols=96 Identities=10% Similarity=0.092 Sum_probs=59.4
Q ss_pred EEEEcCCEEEEEeCCCcEEE---EeCCCCCCccCcccceeeeecccCCC-CCCCeEEEEE-----------cCCCCEEEE
Q 000170 449 VLAVHPSFIAVGMSKGAIVV---VPGKYSAHHRDSMDSKMMMLGLLGDR-SPAPVTAMCF-----------NQPGDLLLA 513 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~v---fd~k~~~~~~d~~~~k~~~l~~~~~~-h~~~VtsLaf-----------S~DG~~Las 513 (1950)
++++++++||+|-.+-.|++ |+.... ..+.....+.+..+.+. ....|||+.+ .+|.+.+|+
T Consensus 8 sls~~~d~laiA~~~r~vil~~~w~~~~~---~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 8 SLSPDGDLLAIARGQRLVILTSKWDSSRK---GENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred EecCCCCEEEEEcCCEEEEEEeecccccc---CCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Confidence 56666789999865555444 433110 00011112222222222 1245776665 267899999
Q ss_pred ecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEec
Q 000170 514 GYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
|+.+|.|++|.- +|..+..-. -|..+|..|.+..
T Consensus 85 G~ssG~vrfyte-~G~LL~~Q~-~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 85 GTSSGYVRFYTE-NGVLLLSQL-LHEEPVLKIKCRS 118 (415)
T ss_pred EecccEEEEEec-cchHHHHHh-cCccceEEEEecc
Confidence 999999999996 677665443 7899999999875
No 368
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=75.84 E-value=13 Score=49.52 Aligned_cols=101 Identities=19% Similarity=0.231 Sum_probs=68.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEE---cCCC-CEEEEecCCCcEEEEECCCCce
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCF---NQPG-DLLLAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLaf---S~DG-~~LasG~~dG~I~lWDl~~g~~ 530 (1950)
-.||+|.-+|.|.+||+... ..+++ ...+..+|--|+| -+|+ ..|++=+....|.+|+..+|+.
T Consensus 80 lliAsaD~~GrIil~d~~~~---------s~~~~---l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLA---------SVINW---LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred eeEEeccccCcEEEEEehhh---------hhhhh---hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 46999999999999998532 12232 2446778888887 3456 6888889999999999999987
Q ss_pred eeeeccCcCCCeEE-EEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 531 AKVITGEHTSPVVH-TLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 531 l~tl~~~H~~~I~~-v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.=...-+| -|.+ ..|.| ...||..+++ .+|.|+...+
T Consensus 148 ~Wk~~ys~--~iLs~f~~DP---fd~rh~~~l~--s~g~vl~~~~ 185 (1062)
T KOG1912|consen 148 FWKYDYSH--EILSCFRVDP---FDSRHFCVLG--SKGFVLSCKD 185 (1062)
T ss_pred eeccccCC--cceeeeeeCC---CCcceEEEEc--cCceEEEEec
Confidence 53332123 3333 44444 3357766665 5677777765
No 369
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.23 E-value=1.8e+02 Score=41.44 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=44.0
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.+.|.++.|-.|+.-++.+.+.|+|.+-|..+.... +.+--.+.|..++|++|
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~D 120 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPD 120 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCC
Confidence 368999999999999999999999999998887532 22223589999999998
No 370
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.13 E-value=8.9 Score=50.52 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=79.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCC-CEEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPG-DLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG-~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
.|-+|.|+...-.+|++..+. .++.-++ ..+|..+||-+.|+++. ..||+.+.|-.|..||+.+....-.
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss-----~~aIef~----lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y 152 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSS-----SNAIEFV----LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY 152 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCC-----ccceEEE----EecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence 689999999999999986431 1222223 35689999999999885 5899999999999999998764322
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccc-eeeeEEeecCCCccccE
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNR-FSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~-~t~~s~~ll~g~~~g~V 599 (1950)
.+..-.++-+.|+|...++ + .++++ .+-. +++|+- +...-.|.+.| |...|
T Consensus 153 s~~~w~s~asqVkwnyk~p----~-vlass-hg~~--------i~vwd~r~gs~pl~s~K~-~vs~v 204 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDP----N-VLASS-HGND--------IFVWDLRKGSTPLCSLKG-HVSSV 204 (1081)
T ss_pred eeecccccCceeeecccCc----c-hhhhc-cCCc--------eEEEeccCCCcceEEecc-cceee
Confidence 2223345778899997632 2 22222 2222 344543 23345677777 66555
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.01 E-value=11 Score=51.88 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHHhhcCchHHHHHHhhCC-CCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHH
Q 000170 1472 VTDDMIELYLELLCRYERDSVLKFLETFD-SYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSEL 1541 (1950)
Q Consensus 1472 ~~~~l~elYIeLLCqydP~~Vl~fLqt~~-~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L 1541 (1950)
++..+...|+ +.+|.-|.++|+... ...++++-.+.++.+.+.+++.||...|++.+||+++.+..
T Consensus 465 IDttLlk~Yl----~~n~~~v~~llrlen~~c~vee~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 465 IDTTLLKCYL----ETNPGLVGPLLRLENNHCDVEEIETVLKKSKKYRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred HHHHHHHHHH----hcCchhhhhhhhccCCCcchHHHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHh
Confidence 5788999999 899999999999865 58899999999999999999999999999999999876543
No 372
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=72.50 E-value=6.1 Score=52.50 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=71.5
Q ss_pred EEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 449 VLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 449 ~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
++.-|+ -.+|+|=..|.+.+|.-.. .+-.+ ....|..+|+-+.||+||+.|.+|+.=|.|.+|-..
T Consensus 64 SLCWHpe~~vLa~gwe~g~~~v~~~~~-------~e~ht-----v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 64 SLCWHPEEFVLAQGWEMGVSDVQKTNT-------TETHT-----VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhccChHHHHHhhccccceeEEEecCC-------ceeee-----eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 344444 4599999999999997521 11111 123589999999999999999999999999999875
Q ss_pred C-Cceee-eeccCc--CCCeEEEEEecCCC---ccCCceEEEEecCCceE
Q 000170 527 R-ASAAK-VITGEH--TSPVVHTLFLGQDS---QVTRQFKAVTGDTKGLV 569 (1950)
Q Consensus 527 ~-g~~l~-tl~~~H--~~~I~~v~F~~d~~---~~~~~~~~vssD~~G~V 569 (1950)
- |+... ++. -| +..++.++|--.-+ ...-.-.+|++|++++=
T Consensus 132 ~~g~~q~~~~~-~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD 180 (1416)
T KOG3617|consen 132 VIGEIQTSNIM-QHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALD 180 (1416)
T ss_pred eccccccchhh-hhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhc
Confidence 2 43221 111 34 46788888863210 00011358999998754
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.43 E-value=2.5e+02 Score=36.34 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=25.9
Q ss_pred EeeEEecc--ccceeeeeccCCeEEEEeecCeEEEEecCCe
Q 000170 742 VYGKWSLD--SAAIGVAWLDDQMLVVLTLLGQLYLYARDGT 780 (1950)
Q Consensus 742 ~~~~~~~~--~~I~~l~WLs~~iL~vLt~s~~L~l~d~~~~ 780 (1950)
...+..++ .....+.|++++.+++.. .+.+.++...+.
T Consensus 250 ~~~e~~~~~~~~p~~~~WCG~dav~l~~-~~~l~lvg~~~~ 289 (410)
T PF04841_consen 250 KLCEFDTDSKSPPKQMAWCGNDAVVLSW-EDELLLVGPDGD 289 (410)
T ss_pred eeEEeecCcCCCCcEEEEECCCcEEEEe-CCEEEEECCCCC
Confidence 34555555 678899999998766555 566777765443
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=70.69 E-value=13 Score=38.95 Aligned_cols=52 Identities=21% Similarity=-0.001 Sum_probs=40.0
Q ss_pred HHHHHhhcCCCCCCChHHHHHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHhccC
Q 000170 1287 QLLALLEAVPETDWNASEVLHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVD 1340 (1950)
Q Consensus 1287 aL~~LLs~y~~~d~d~d~lL~L~e~A~FyrVL~~LY~~~~qY~~aL~~yL~D~d 1340 (1950)
.+..|++.- +.-+.+.+.+..++.++|+.|..+|..+|+|.+||+.+-+-.+
T Consensus 16 ~l~~llr~~--N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 16 LLGPLLRLP--NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHccC--CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355666542 2234556667778889999999999999999999999987554
No 376
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.57 E-value=8.1 Score=50.85 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=92.0
Q ss_pred eeeEEecCChhHHHHhhhc-----cccccCCC---cEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeee
Q 000170 420 LGYFDVDANNTITQTIASQ-----AFRRDHGS---PQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMML 488 (1950)
Q Consensus 420 ~~~~~~~~~~~iS~~i~s~-----~f~~~~G~---pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l 488 (1950)
..+++|.+-.+|--.++.+ +|. -+|. +|-+..++ ..+|..+-+-.|..||.+. +|. -+.
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~-lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS-p~~--------p~y 152 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFV-LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS-PHR--------PFY 152 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEE-EecCccceeccccCCCCCcceeeccccccceeeeccC-CCc--------cee
Confidence 4567777777776665532 231 2332 45566664 6799999999999999964 211 111
Q ss_pred cccCCCCCCCeEEEEEcC-CCCEEEEecCCCcEEEEECCCCc-eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 489 GLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHVTVWDVQRAS-AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 489 ~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I~lWDl~~g~-~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
. . ..-...-+.++||- |+..||+.+ ...|++||+..|. .+.++. +|.+.|.++.|..- .+..+.+++.+
T Consensus 153 s-~-~~w~s~asqVkwnyk~p~vlassh-g~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~-----~~s~~~s~~~d 223 (1081)
T KOG0309|consen 153 S-T-SSWRSAASQVKWNYKDPNVLASSH-GNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRF-----KYSEIMSSSND 223 (1081)
T ss_pred e-e-ecccccCceeeecccCcchhhhcc-CCceEEEeccCCCcceEEec-ccceeeehHHHhhh-----hhhhhcccCCC
Confidence 0 1 11234567788874 666666655 5789999999875 677787 79999999999863 56789999999
Q ss_pred ceEEEEcc
Q 000170 567 GLVQLHSL 574 (1950)
Q Consensus 567 G~V~~h~f 574 (1950)
|.|-.++.
T Consensus 224 ~tvkfw~y 231 (1081)
T KOG0309|consen 224 GTVKFWDY 231 (1081)
T ss_pred Cceeeecc
Confidence 86655554
No 377
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=70.33 E-value=1.2 Score=53.38 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|.||..-+.-+ ++-.|||.|..-|+.. -+. ....||.|.-.
T Consensus 23 lLRC~IC~eyf~ip------~itpCsHtfCSlCIR~-~L~----~~p~CP~C~~~ 66 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP------MITPCSHTFCSLCIRK-FLS----YKPQCPTCCVT 66 (442)
T ss_pred HHHHhHHHHHhcCc------eeccccchHHHHHHHH-Hhc----cCCCCCceecc
Confidence 36899999877665 5667999999999963 221 35789999753
No 378
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=2 Score=51.19 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=34.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|+++...+ ||-.|||.|...|... .+ + ....|++|...-
T Consensus 241 Pf~c~icr~~f~~p------Vvt~c~h~fc~~ca~~-~~-q---k~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP------VVTKCGHYFCEVCALK-PY-Q---KGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc------hhhcCCceeehhhhcc-cc-c---cCCcceeccccc
Confidence 46799999988886 7899999999999842 11 1 236899998643
No 379
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=69.50 E-value=1.1 Score=49.98 Aligned_cols=43 Identities=26% Similarity=0.525 Sum_probs=33.1
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..|.+|.+....+ ||-.|||.|...|... .+ + ....|.+|-..
T Consensus 197 F~C~iCKkdy~sp------vvt~CGH~FC~~Cai~-~y-~---kg~~C~~Cgk~ 239 (259)
T COG5152 197 FLCGICKKDYESP------VVTECGHSFCSLCAIR-KY-Q---KGDECGVCGKA 239 (259)
T ss_pred eeehhchhhccch------hhhhcchhHHHHHHHH-Hh-c---cCCcceecchh
Confidence 5899999877765 7889999999999852 11 1 24689999753
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=69.25 E-value=7.4 Score=29.42 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=23.5
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEe
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVP 470 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd 470 (1950)
...+.++++..++ .++++|+.+|.|.+||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455678888875 6899999999999996
No 381
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=68.91 E-value=6.9 Score=46.86 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=35.2
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
....|-.|++||||+.||+-|.+|.|.||++.+-.+.+..
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 3567999999999999999999999999999987766554
No 382
>PRK04043 tolB translocation protein TolB; Provisional
Probab=68.32 E-value=46 Score=42.96 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=49.1
Q ss_pred EEEcCCEEEEEeC-C--CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC-C--cEEEE
Q 000170 450 LAVHPSFIAVGMS-K--GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD-G--HVTVW 523 (1950)
Q Consensus 450 ia~s~~~IAvGts-~--G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d-G--~I~lW 523 (1950)
..++++.||...+ + +.|.++|...+ ..+ .+ +.+.+..+.-.|||||+.|+-.+.. | +|.++
T Consensus 240 ~SPDG~~la~~~~~~g~~~Iy~~dl~~g-------~~~--~L----T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 240 VSKDGSKLLLTMAPKGQPDIYLYDTNTK-------TLT--QI----TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred ECCCCCEEEEEEccCCCcEEEEEECCCC-------cEE--Ec----ccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 4455667776544 2 45777776431 111 11 1122223445799999988877643 2 79999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|+.+|+..+....+. ....|++|
T Consensus 307 dl~~g~~~rlt~~g~----~~~~~SPD 329 (419)
T PRK04043 307 KLNSGSVEQVVFHGK----NNSSVSTY 329 (419)
T ss_pred ECCCCCeEeCccCCC----cCceECCC
Confidence 999888744433222 12478987
No 383
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.11 E-value=2.8 Score=47.66 Aligned_cols=54 Identities=24% Similarity=0.458 Sum_probs=37.6
Q ss_pred cCccccCCCcccccccccccCCCCCeEEEecCCCcccccccccc--cccC-CCCCCCCCCCcCC
Q 000170 1748 SHGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLE--NESS-SKSNLSGCPLCMP 1808 (1950)
Q Consensus 1748 ~rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~e--n~g~-~~~~~~~CpiC~~ 1808 (1950)
..-| ...|..|+-+|.... .+-.-|-|.||-.|+.+. ++-. .....+.||-|+.
T Consensus 46 DsDY---~pNC~LC~t~La~gd----t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ 102 (299)
T KOG3970|consen 46 DSDY---NPNCRLCNTPLASGD----TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQ 102 (299)
T ss_pred hcCC---CCCCceeCCccccCc----ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCC
Confidence 4456 456999999998653 567789999999999631 1111 1224589999986
No 384
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=67.71 E-value=53 Score=41.29 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=44.5
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAA 531 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l 531 (1950)
+.+.+|.+++.+|.+..||.+.+ + ..|.... +...+.+ .++.++.++..+|.|..+|..+|+.+
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG---------~-~~W~~~~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~ 302 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSG---------R-VLWKRDA----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSEL 302 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCC---------c-EEEeecc----CCccCce--EeCCEEEEECCCCeEEEEECCCCcEE
Confidence 34678888999999999998532 2 2332211 1112222 35778888899999999999999875
Q ss_pred e
Q 000170 532 K 532 (1950)
Q Consensus 532 ~ 532 (1950)
-
T Consensus 303 W 303 (377)
T TIGR03300 303 W 303 (377)
T ss_pred E
Confidence 3
No 385
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=67.35 E-value=59 Score=37.51 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCCcEEEEE-cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 444 HGSPQVLAV-HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 444 ~G~pt~ia~-s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
.+.+.+.++ .+.++.+++.+|.|..||.+.+ + ..|........... ...++..+.++..+|.|..
T Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG---------~-~~W~~~~~~~~~~~----~~~~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 25 IGGPVATAVPDGGRVYVASGDGNLYALDAKTG---------K-VLWRFDLPGPISGA----PVVDGGRVYVGTSDGSLYA 90 (238)
T ss_dssp CSSEEETEEEETTEEEEEETTSEEEEEETTTS---------E-EEEEEECSSCGGSG----EEEETTEEEEEETTSEEEE
T ss_pred CCCccceEEEeCCEEEEEcCCCEEEEEECCCC---------C-EEEEeeccccccce----eeecccccccccceeeeEe
Confidence 555565344 6788999999999999997542 2 23332222211111 1235666777778899999
Q ss_pred EECCCCceeeee
Q 000170 523 WDVQRASAAKVI 534 (1950)
Q Consensus 523 WDl~~g~~l~tl 534 (1950)
+|+.+|+.+-..
T Consensus 91 ~d~~tG~~~W~~ 102 (238)
T PF13360_consen 91 LDAKTGKVLWSI 102 (238)
T ss_dssp EETTTSCEEEEE
T ss_pred cccCCcceeeee
Confidence 999999987663
No 386
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=67.13 E-value=5.8 Score=53.24 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=45.8
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEE-----------EcCCCCEEEEecCCC
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMC-----------FNQPGDLLLAGYADG 518 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLa-----------fS~DG~~LasG~~dG 518 (1950)
++++..|+++|-++|.|.+-++.. ...+ ++ .+|.-+|+-++ +||||+.+|....||
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~r-------a~~~-l~-----rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINR-------ALRS-LF-----RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred cccccceeeeccCCCceeEeeech-------HHHH-HH-----HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 566778999999999988776521 1111 11 11433444433 599999999999999
Q ss_pred cEEEEECC-CCc
Q 000170 519 HVTVWDVQ-RAS 529 (1950)
Q Consensus 519 ~I~lWDl~-~g~ 529 (1950)
.++.|-+. +|+
T Consensus 258 ~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 258 SVGFYQIYITGK 269 (1283)
T ss_pred ccceeeeeeecc
Confidence 99999874 454
No 387
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.31 E-value=3.3 Score=48.96 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=36.7
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
....|.+||++=..+ .++-.|||.|.--|+.- + ..-+....||.|..+-.
T Consensus 238 ~~~~C~~Cg~~PtiP-----~~~~~C~HiyCY~Ci~t-s--~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP-----HVIGKCGHIYCYYCIAT-S--RLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCC-----eeeccccceeehhhhhh-h--hcchhhcccCccCCCCc
Confidence 368999999876665 56778999999999852 1 11123368999997665
No 388
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=66.19 E-value=12 Score=45.80 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce----eeeeccCc------------CCCeEEEEEecCCCccCCceE
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA----AKVITGEH------------TSPVVHTLFLGQDSQVTRQFK 559 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~----l~tl~~~H------------~~~I~~v~F~~d~~~~~~~~~ 559 (1950)
..-|++|-|+.+|.+||+|..+|.|.++.-....- .++.-.-| .-.|..+.|..++ ++..-
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~---n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG---NLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---CccEE
Confidence 45699999999999999999999999998654321 11111133 2479999999764 23333
Q ss_pred EEEecCCceEEEEcccccccccce
Q 000170 560 AVTGDTKGLVQLHSLSVVPLLNRF 583 (1950)
Q Consensus 560 ~vssD~~G~V~~h~ft~~rl~~~~ 583 (1950)
+++..++ | +++|.++
T Consensus 102 LlstNdk--------t-iKlWKi~ 116 (433)
T KOG1354|consen 102 LLSTNDK--------T-IKLWKIR 116 (433)
T ss_pred EEecCCc--------c-eeeeeee
Confidence 4444443 2 6677643
No 389
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=65.74 E-value=3 Score=52.56 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=50.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-------------CCCcccccccccccCCCCCeEEEecCC
Q 000170 1714 MLGTYSFERRILDTAKSLIEDDTFYTMSVLKKEASHGYAP-------------RSLLCCICNCLLTKNSSSFQIRVFNCG 1780 (1950)
Q Consensus 1714 mL~sY~yE~~IL~~a~~Lle~Dl~~~l~~l~r~~~rG~~p-------------~s~~C~iC~k~L~~~~~~~~ivVF~CG 1780 (1950)
-|.+|--|..++.+-. .+|.++.++.+...|.+-. ....|.+|+.+- .+.++-.|+
T Consensus 487 kfntyieeGvvlNNYA-----nIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~a------ed~i~s~Ch 555 (791)
T KOG1002|consen 487 KFNTYIEEGVVLNNYA-----NIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPA------EDYIESSCH 555 (791)
T ss_pred hhhhHHhhhhhhhhHH-----HHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChh------hhhHhhhhh
Confidence 3455555555554433 3455666655555554321 247899998643 346788999
Q ss_pred CcccccccccccccCCCCCCCCCCCcCC
Q 000170 1781 HATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1781 HafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
|.|..-|+.+--.+-..+....||+|.-
T Consensus 556 H~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 556 HKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred HHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 9999999953111111123478999974
No 390
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.53 E-value=3.2 Score=48.13 Aligned_cols=47 Identities=28% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..-|.||-..- .+-||--|||.|.--|+- +=+ +...+...||+|...
T Consensus 47 ~FdCNICLd~a------kdPVvTlCGHLFCWpCly-qWl-~~~~~~~~cPVCK~~ 93 (230)
T KOG0823|consen 47 FFDCNICLDLA------KDPVVTLCGHLFCWPCLY-QWL-QTRPNSKECPVCKAE 93 (230)
T ss_pred ceeeeeecccc------CCCEEeecccceehHHHH-HHH-hhcCCCeeCCccccc
Confidence 35677775322 235899999999999985 211 112345789999863
No 391
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=63.02 E-value=3.2 Score=49.49 Aligned_cols=46 Identities=26% Similarity=0.642 Sum_probs=35.0
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
-++-..|.-|+++|..=+ ++..|.|+|...|...+ ..+.||.|...
T Consensus 87 ~p~VHfCd~Cd~PI~IYG-----RmIPCkHvFCl~CAr~~-------~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 87 GPRVHFCDRCDFPIAIYG-----RMIPCKHVFCLECARSD-------SDKICPLCDDR 132 (389)
T ss_pred CcceEeecccCCcceeee-----cccccchhhhhhhhhcC-------ccccCcCcccH
Confidence 355678999999886432 56789999999998642 35789999853
No 392
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.65 E-value=29 Score=40.85 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=49.8
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee------cc-------CcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 497 APVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI------TG-------EHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl------~~-------~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
++|.. +..+|.+|++=..+|.+.+||+.+++++..- -. .....|+++..+.+ +..++.-+
T Consensus 13 s~~~~--l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-----G~PiV~ls 85 (219)
T PF07569_consen 13 SPVSF--LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-----GVPIVTLS 85 (219)
T ss_pred CceEE--EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-----CCEEEEEe
Confidence 34544 4568999999999999999999999875221 11 24467888888854 44555555
Q ss_pred cCCceEEEEccccccccc
Q 000170 564 DTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 564 D~~G~V~~h~ft~~rl~~ 581 (1950)
+ |.+|.++-. .+.|-
T Consensus 86 n--g~~y~y~~~-L~~W~ 100 (219)
T PF07569_consen 86 N--GDSYSYSPD-LGCWI 100 (219)
T ss_pred C--CCEEEeccc-cceeE
Confidence 5 445555543 45664
No 393
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.45 E-value=6.6e+02 Score=35.78 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=28.3
Q ss_pred EcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcC--CCeEEEEEecC
Q 000170 504 FNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHT--SPVVHTLFLGQ 550 (1950)
Q Consensus 504 fS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~--~~I~~v~F~~d 550 (1950)
.+|+.+.|+.-. .+++.|+++....+.+ .|+ ..|.-=.|..+
T Consensus 72 m~P~kkvialka-~~~lQIFniE~KsK~k----sh~m~E~VifWkWIs~ 115 (1666)
T KOG0985|consen 72 MNPDKKVIALKA-GKTLQIFNIERKSKSK----AHTMDEDVIFWKWISD 115 (1666)
T ss_pred hCchHHHHHHhh-CCeEEEEehhhhhhhc----cCCCCCceEEEEecch
Confidence 378777766544 5699999999877654 443 45666667654
No 394
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=61.04 E-value=11 Score=49.26 Aligned_cols=140 Identities=26% Similarity=0.352 Sum_probs=67.8
Q ss_pred ecCCCcccccccccc-----cccCCCCCCCCCCCcCCCcCccc-ccccceeecCCccccc-CCcccccCccc--ccccCC
Q 000170 1777 FNCGHATHIQCELLE-----NESSSKSNLSGCPLCMPKKNTQR-SRNKTVLAESGLVSKF-SSRPQQSLGTT--LHSHES 1847 (1950)
Q Consensus 1777 F~CGHafH~~CL~~e-----n~g~~~~~~~~CpiC~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~ 1847 (1950)
-.|..+||..|...- ..|.-.++..+|--|...-.+.+ +++ ++.+ +-.+.++...+ -..||.
T Consensus 143 s~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlkk~~~---------~k~ipsy~~s~s~s~s~q~~shEk 213 (900)
T KOG0956|consen 143 SGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLKKSPA---------IKVIPSYKPSQSASPSVQQLSHEK 213 (900)
T ss_pred ccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhhcCCC---------cccCCCCccccccCCchhhhhhhh
Confidence 379999999998521 11111235689999987555542 122 2222 22233333331 122443
Q ss_pred CcccCccccccccHHHHHHhhhcccccccccCCCccc-cCCCchh-hhhhcccccc-ccCcccccccccccccccccchh
Q 000170 1848 DTSDYSNGIQQLSRFEILNNLRKDQRVVQIENMPQLR-LAPPAIY-HEKVKKGTDL-LMGESSRGLLETEKASKNRPLRE 1924 (1950)
Q Consensus 1848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 1924 (1950)
+-.+|-+--..=||-++ .+-|+++ |+||-+- -+||-.-... --|++|-+-+ .|- ||
T Consensus 214 ---------e~ks~k~k~~~kq~~~k----~pe~s~~~l~~~l~~t~nkvn~s~s~~Sagsasg~~v-ses-------r~ 272 (900)
T KOG0956|consen 214 ---------EKKSKKKKVLLKQKHKK----PPEPSPHMLAPPLPITSNKVNNSLSAGSAGSASGAVV-SES-------RE 272 (900)
T ss_pred ---------hhhhhhhhhhhhccccC----CCCCCccccCCCCCcccchhccccccccccccccccc-ccc-------cc
Confidence 22233332222233322 1245554 7887654 5666543321 0133332222 221 67
Q ss_pred hhccCCCCcccCcccccccccc
Q 000170 1925 LKLKGSSSLRFPLRSSIFGKEK 1946 (1950)
Q Consensus 1925 ~~~~~~~~~~~~~~~~~~~~~~ 1946 (1950)
.|.|.+++--|-+|+.-|+..+
T Consensus 273 ~kgkkssS~s~~~k~~k~ss~~ 294 (900)
T KOG0956|consen 273 AKGKKSSSHSFVPKGTKFSSGL 294 (900)
T ss_pred ccCcccccccccCCCcCCCCCC
Confidence 7777777777777777666543
No 395
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.98 E-value=41 Score=43.69 Aligned_cols=97 Identities=20% Similarity=0.157 Sum_probs=51.7
Q ss_pred CCCcEEEEEcC-CEEEEEeCCCcEEEE-eCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP-SFIAVGMSKGAIVVV-PGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~IAvGts~G~I~vf-d~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
+|.....+..+ +..|+-.+.+.|.|| +++ +...+.+. ....+..|-. |..|+..+.+ .|.
T Consensus 68 ~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~-------~~~~k~i~-------~~~~~~~If~---G~LL~~~~~~-~i~ 129 (443)
T PF04053_consen 68 FGSGLSFVWSSRNRYAVLESSSTIKIYKNFK-------NEVVKSIK-------LPFSVEKIFG---GNLLGVKSSD-FIC 129 (443)
T ss_dssp EEE-SEEEE-TSSEEEEE-TTS-EEEEETTE-------E-TT------------SS-EEEEE----SSSEEEEETT-EEE
T ss_pred cCceeEEEEecCccEEEEECCCeEEEEEcCc-------cccceEEc-------CCcccceEEc---CcEEEEECCC-CEE
Confidence 45544444443 667777778888886 221 11111121 1123555543 9988888654 899
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+||+++++.++.+. . .+|.+|.|+++ +..+++.+++.
T Consensus 130 ~yDw~~~~~i~~i~--v-~~vk~V~Ws~~-----g~~val~t~~~ 166 (443)
T PF04053_consen 130 FYDWETGKLIRRID--V-SAVKYVIWSDD-----GELVALVTKDS 166 (443)
T ss_dssp EE-TTT--EEEEES--S--E-EEEEE-TT-----SSEEEEE-S-S
T ss_pred EEEhhHcceeeEEe--c-CCCcEEEEECC-----CCEEEEEeCCe
Confidence 99999999998884 2 24999999986 45677777665
No 396
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=60.91 E-value=2.5 Score=40.66 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=19.0
Q ss_pred CCcccccccccccCCCCCeEEEe---cCCCcccccccccccc---cCC--CC-CCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF---NCGHATHIQCELLENE---SSS--KS-NLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF---~CGHafH~~CL~~en~---g~~--~~-~~~~CpiC~~~ 1809 (1950)
...|.||...+....... .++= .|++.||..||..--+ +.. .. ....||.|...
T Consensus 2 ~~~C~IC~~~~~~~~~~p-~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIP-DVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecCCCCcC-ceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 467999998766332112 2333 7999999999973111 111 00 12369999853
No 397
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=60.62 E-value=50 Score=42.96 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=44.4
Q ss_pred CCCCeEEEEEcCCCCEEEE-ec--CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 495 SPAPVTAMCFNQPGDLLLA-GY--ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~Las-G~--~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
..||=.++-|||-|.+++- |+ ..|.|-+||+.+.+++-.+. ...-+-..|+||| .+++..+.
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdG----e~flTATT 374 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDG----EYFLTATT 374 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCC----cEEEEEec
Confidence 3577788999999997664 43 56999999999988876553 2334556899983 55554443
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.41 E-value=16 Score=50.49 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=62.3
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
..|+...|+.|+|+.++.. ...+ +.-.....+||++|||-|+.|+.|..+|+|.-|.-. ++..+.+.
T Consensus 170 n~av~l~dlsl~V~~~~~~---------~~~v---~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip 236 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQL---------AQNV---TSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIP 236 (1405)
T ss_pred hhhhhccccchhhhhhhhh---------hhhh---cccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeeccc
Confidence 3566678889999876421 1112 111245679999999999999999999999999754 45444443
Q ss_pred c---CcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 536 G---EHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 536 ~---~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
. ....+|++|+|++. +.++++-+
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t-----~eflvvy~ 262 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLST-----QEFLVVYG 262 (1405)
T ss_pred CCCcCCCcceeEEEEecc-----eeEEEEec
Confidence 2 12579999999963 55665544
No 399
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=60.31 E-value=2.7 Score=36.67 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=15.0
Q ss_pred ccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1758 CCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1758 C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
|.+|.. ...+ .+. =++..|||+|-..|+.
T Consensus 1 CpIc~e-~~~~-~n~-P~~L~CGH~~c~~cl~ 29 (43)
T PF13445_consen 1 CPICKE-FSTE-ENP-PMVLPCGHVFCKDCLQ 29 (43)
T ss_dssp -TTT-----TT-SS--EEE-SSS-EEEHHHHH
T ss_pred CCcccc-ccCC-CCC-CEEEeCccHHHHHHHH
Confidence 788888 5432 122 3456699999999994
No 400
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.85 E-value=34 Score=40.27 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=51.7
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec----ccCC-------CCCCCeEEEEEcCCCCEEEEec
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG----LLGD-------RSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~----~~~~-------~h~~~VtsLafS~DG~~LasG~ 515 (1950)
|..+..++.|+.+=|++|.+.+||++.. +.+.-. +... .....|+++.++.+|.-|++ -
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~---------k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-l 84 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKG---------KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-L 84 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCC---------eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-E
Confidence 4668888899999999999999999531 222110 0011 35577999999988886654 5
Q ss_pred CCCcEEEEECCCCc
Q 000170 516 ADGHVTVWDVQRAS 529 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~ 529 (1950)
.+|+...||..=+.
T Consensus 85 sng~~y~y~~~L~~ 98 (219)
T PF07569_consen 85 SNGDSYSYSPDLGC 98 (219)
T ss_pred eCCCEEEeccccce
Confidence 67999999976443
No 401
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=58.00 E-value=3.4 Score=48.71 Aligned_cols=47 Identities=32% Similarity=0.608 Sum_probs=35.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
+..|..|++.|-.+ +.---|||.|...|+....+ .+...||.|.+++
T Consensus 274 ~LkCplc~~Llrnp-----~kT~cC~~~fc~eci~~al~----dsDf~CpnC~rkd 320 (427)
T COG5222 274 SLKCPLCHCLLRNP-----MKTPCCGHTFCDECIGTALL----DSDFKCPNCSRKD 320 (427)
T ss_pred cccCcchhhhhhCc-----ccCccccchHHHHHHhhhhh----hccccCCCccccc
Confidence 48899999988765 23357999999999842111 2468999999855
No 402
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=57.15 E-value=23 Score=48.11 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=63.6
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec-C-----
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY-A----- 516 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~-~----- 516 (1950)
.++.++-+..++.++.+|...|+|.+=|.+.. +++ .+...|++.|+.++ -.|..|++++ .
T Consensus 176 ~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~---------~~i---ht~~aHs~siSDfD--v~GNlLitCG~S~R~~~ 241 (1118)
T KOG1275|consen 176 SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF---------ETI---HTFDAHSGSISDFD--VQGNLLITCGYSMRRYN 241 (1118)
T ss_pred cCCceEEEEecCcEEEeecccceEEeecCCcC---------cee---eeeeccccceeeee--ccCCeEEEeeccccccc
Confidence 34447888888899999999999999998542 111 13456999998654 5777666654 3
Q ss_pred ---CCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 517 ---DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 517 ---dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|--|++||+..-+.+-.+. .|-.+ .-+.|.|.
T Consensus 242 l~~D~FvkVYDLRmmral~PI~-~~~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 242 LAMDPFVKVYDLRMMRALSPIQ-FPYGP-QFLRFHPS 276 (1118)
T ss_pred ccccchhhhhhhhhhhccCCcc-cccCc-hhhhhccc
Confidence 3348999999887766554 44444 44567764
No 403
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=56.39 E-value=27 Score=40.56 Aligned_cols=45 Identities=24% Similarity=0.534 Sum_probs=30.9
Q ss_pred Cccccccc-ccccCCCC-CeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNC-LLTKNSSS-FQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k-~L~~~~~~-~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|++|+. .+.-+.+. ..+.--.|+..||..|.. ...||.|.+-+
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~----------~~~CpkC~R~~ 199 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR----------KKSCPKCARRQ 199 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC----------CCCCCCcHhHh
Confidence 47999995 33333332 345555799999999984 14699998744
No 404
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=56.13 E-value=1.2e+02 Score=42.52 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=79.6
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCC------CEEEEecCCCcE
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPG------DLLLAGYADGHV 520 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG------~~LasG~~dG~I 520 (1950)
+.+.|++...|++.+++|-.+-|-.-. .+.+.-+. +-.....-|+|+++.+++ ++||.|.-|++|
T Consensus 542 Iv~~avnr~qiVvalSngelvyfe~d~--------sgql~E~~-er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~v 612 (1205)
T KOG1898|consen 542 IVKCAVNRRQIVVALSNGELVYFEGDV--------SGQLNEFT-ERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMV 612 (1205)
T ss_pred EEEEeecceEEEEEccCCeEEEEEecc--------Cccceeee-eeeeeceeehhhccCCCCcchhhcceeeeeccccce
Confidence 567888888899999999999886521 11111110 112246779999999986 689999999999
Q ss_pred EEEECCCCceeeeecc-CcCCCeEEEEEecCCCccC---CceEEEEecCCceEEEE
Q 000170 521 TVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVT---RQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~---~~~~~vssD~~G~V~~h 572 (1950)
++.-+....++..++. +-..++.++.+......+. .+..+.+|=..|+++-.
T Consensus 613 riisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 613 RIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred eEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 9999997777777742 4467888888886533221 14455555556655543
No 405
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=55.52 E-value=37 Score=46.38 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=59.8
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAK 532 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~ 532 (1950)
++..+..|+--..+..+|++.. +... ...-..+.|+-|+. +++.|.+|+..|+|.|-|.++-+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---------~e~r---~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih 211 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---------KETR---TTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH 211 (1118)
T ss_pred CCcceeecchhhheeeeecccc---------eeee---eeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceee
Confidence 4456777766667888887431 1111 11112334888875 78999999999999999999999999
Q ss_pred eeccCcCCCeEEEEEec
Q 000170 533 VITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 533 tl~~~H~~~I~~v~F~~ 549 (1950)
++. +|++.|....-.|
T Consensus 212 t~~-aHs~siSDfDv~G 227 (1118)
T KOG1275|consen 212 TFD-AHSGSISDFDVQG 227 (1118)
T ss_pred eee-ccccceeeeeccC
Confidence 995 9999998766554
No 406
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=55.50 E-value=58 Score=41.72 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=37.8
Q ss_pred cCCCcccccccccccc---cCC-C------CCCCCCCCcCCCcCc-----------cccccccee-ecCCcccccCCccc
Q 000170 1778 NCGHATHIQCELLENE---SSS-K------SNLSGCPLCMPKKNT-----------QRSRNKTVL-AESGLVSKFSSRPQ 1835 (1950)
Q Consensus 1778 ~CGHafH~~CL~~en~---g~~-~------~~~~~CpiC~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~ 1835 (1950)
-|||..|..|.-..++ |.. . ...+.|.-|.....= ...+++-.+ .+-.++.++=.-.+
T Consensus 151 ~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~vf~~ca~~~~~d~L~~eL~l~~rIf~GSe 230 (446)
T PF07227_consen 151 VCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTSELLGFVKKVFQTCAKAWRVDVLCKELDLVRRIFRGSE 230 (446)
T ss_pred CCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCcc
Confidence 4999999999853332 211 1 124799999875532 122333322 45555555433444
Q ss_pred ccCcccccccC
Q 000170 1836 QSLGTTLHSHE 1846 (1950)
Q Consensus 1836 ~~~~~~~~~~~ 1846 (1950)
+..|..+|+.-
T Consensus 231 d~rgk~L~~~~ 241 (446)
T PF07227_consen 231 DYRGKELHEKV 241 (446)
T ss_pred chhHHHHHHHH
Confidence 44455566654
No 407
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=55.43 E-value=2.9 Score=37.20 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=29.9
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCC-CCCCCCCCCcCC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSS-KSNLSGCPLCMP 1808 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~-~~~~~~CpiC~~ 1808 (1950)
+|.+|++.-.. ...+.==.|+..||..|+........ ....+.|+.|.+
T Consensus 1 ~C~vC~~~~~~---~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDD---GDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTT---SSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCC---CCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 48899982222 22333347999999999964221100 112699999964
No 408
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.93 E-value=4.1 Score=48.04 Aligned_cols=48 Identities=27% Similarity=0.527 Sum_probs=33.9
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
+...|.+|-.....+ ..-.|||.|-..|+.. +.+ .....+||+|..+-
T Consensus 214 ~d~kC~lC~e~~~~p------s~t~CgHlFC~~Cl~~--~~t-~~k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVP------SCTPCGHLFCLSCLLI--SWT-KKKYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCc------ccccccchhhHHHHHH--HHH-hhccccCchhhhhc
Confidence 468899998766654 4578999999999942 122 11335699998653
No 409
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=54.16 E-value=1.1e+02 Score=35.19 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=49.6
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec-ccCC-CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 451 AVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG-LLGD-RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 451 a~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~-~~~~-~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
.+.+..|.+++.+|.|..||.+.+ +. .|. .... ....-....++..+|..++++..+|.|..+|+.+|
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG---------~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTG---------KV-LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTS---------CE-EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred eecccccccccceeeeEecccCCc---------ce-eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 555678899999999999997542 21 222 1111 11112233333445999999999999999999999
Q ss_pred ceeeeec
Q 000170 529 SAAKVIT 535 (1950)
Q Consensus 529 ~~l~tl~ 535 (1950)
+.+-...
T Consensus 143 ~~~w~~~ 149 (238)
T PF13360_consen 143 KLLWKYP 149 (238)
T ss_dssp EEEEEEE
T ss_pred cEEEEee
Confidence 9876664
No 410
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.63 E-value=8.2 Score=45.27 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=41.7
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCcc-cccccceeecCCcccccCCcc
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQ-RSRNKTVLAESGLVSKFSSRP 1834 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1834 (1950)
.|..|++.=. ...+.+-.|+|+|...|... .....|++|...-+.. -+++ +-+++.+.|.+..
T Consensus 5 hCn~C~~~~~----~~~f~LTaC~HvfC~~C~k~-------~~~~~C~lCkk~ir~i~l~~s----lp~~ik~~F~d~~ 68 (233)
T KOG4739|consen 5 HCNKCFRFPS----QDPFFLTACRHVFCEPCLKA-------SSPDVCPLCKKSIRIIQLNRS----LPTDIKSYFADPP 68 (233)
T ss_pred EeccccccCC----CCceeeeechhhhhhhhccc-------CCccccccccceeeeeecccc----cchhHHHHccCcH
Confidence 5888876433 24589999999999999852 1224899999764332 2233 5566666675544
No 411
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=52.69 E-value=4.7e+02 Score=31.15 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=48.1
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
|.+..++.|++||++| |.+++.+.. ...+.+. +..+|+.|+.-++-..|++=+ ||.+.++|+..-
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~------~~~~~i~-------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDP------SKPTRIL-------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCC------ccceeEe-------ecceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 5566679999999999 888887321 1112121 234599999999887766665 599999999876
Q ss_pred cee
Q 000170 529 SAA 531 (1950)
Q Consensus 529 ~~l 531 (1950)
...
T Consensus 67 ~~~ 69 (275)
T PF00780_consen 67 EPV 69 (275)
T ss_pred ccc
Confidence 543
No 412
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.05 E-value=22 Score=44.89 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=77.6
Q ss_pred cEEEEEc-CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC-CCcEEEEE
Q 000170 447 PQVLAVH-PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA-DGHVTVWD 524 (1950)
Q Consensus 447 pt~ia~s-~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~-dG~I~lWD 524 (1950)
++-+.+. .+++..++-||+++.|--+. ..+..+.- -...|.+.|.+++.|-||...+++.. |-.++++|
T Consensus 12 i~hv~~tka~fiiqASlDGh~KFWkKs~-------isGvEfVK--hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 12 ITHVFPTKAKFIIQASLDGHKKFWKKSR-------ISGVEFVK--HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred eeeEeeehhheEEeeecchhhhhcCCCC-------ccceeehh--hhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 4545555 48999999999999996421 01111111 12347888999999999999999777 99999988
Q ss_pred CCCCcee-----------------------------------------------eeeccCcCCCeEEEEEecCCCccCCc
Q 000170 525 VQRASAA-----------------------------------------------KVITGEHTSPVVHTLFLGQDSQVTRQ 557 (1950)
Q Consensus 525 l~~g~~l-----------------------------------------------~tl~~~H~~~I~~v~F~~d~~~~~~~ 557 (1950)
+.+-... .-..+-|.++|..+.+++- -
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa------~ 156 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA------G 156 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc------c
Confidence 7743211 0011237788888888853 2
Q ss_pred eEEEEecCCceEEEEccc
Q 000170 558 FKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 558 ~~~vssD~~G~V~~h~ft 575 (1950)
-.++|.|.+|+|=+|+..
T Consensus 157 Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cceeeccccceeEeecCC
Confidence 368888999988888864
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=51.68 E-value=47 Score=39.13 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=42.3
Q ss_pred EEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 502 MCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 502 LafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+++..+|...++.+..|+|...|..+|+.++.+. --+..|++++|-+.
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITSCCFGGK 264 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEEEEecCC
Confidence 3456789999999999999999999999999886 45889999999974
No 414
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=51.67 E-value=9.3e+02 Score=34.30 Aligned_cols=147 Identities=16% Similarity=0.237 Sum_probs=85.9
Q ss_pred cccccccccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC-----C---EEEEEeCCCcEEEEeCCCCCCcc
Q 000170 407 PMRLEGVRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP-----S---FIAVGMSKGAIVVVPGKYSAHHR 478 (1950)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~-----~---~IAvGts~G~I~vfd~k~~~~~~ 478 (1950)
.+-+.| |+-.+=|+..+... |....-+...+.+.|+.++| + ++|||.-+-.+.+--.-
T Consensus 501 qVvvA~---~~~~l~y~~i~~~~-----l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~------ 566 (1096)
T KOG1897|consen 501 QVVVAG---GGLALFYLEIEDGG-----LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL------ 566 (1096)
T ss_pred EEEEec---CccEEEEEEeeccc-----eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC------
Confidence 444444 55566677665544 33334445677889997663 3 89999777665544221
Q ss_pred Ccccceeeeec-ccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC--CCceeeeeccCc--CCCeEEEEEecCCCc
Q 000170 479 DSMDSKMMMLG-LLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ--RASAAKVITGEH--TSPVVHTLFLGQDSQ 553 (1950)
Q Consensus 479 d~~~~k~~~l~-~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~--~g~~l~tl~~~H--~~~I~~v~F~~d~~~ 553 (1950)
.+...++.. ..++.---+|-..+|-.|+.+|.+|..||.+.-+-+. +|+.--.-. .| +.|++==.|...
T Consensus 567 --pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk-~~lGt~P~~Lr~f~sk--- 640 (1096)
T KOG1897|consen 567 --PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKK-VTLGTQPISLRTFSSK--- 640 (1096)
T ss_pred --CCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccc-cccCCCCcEEEEEeeC---
Confidence 111112211 0112223356777888889999999999998766555 444321111 22 356666677765
Q ss_pred cCCceEEEEecCCceEEEEcc
Q 000170 554 VTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 554 ~~~~~~~vssD~~G~V~~h~f 574 (1950)
++...+..+|.=-++|.|+.
T Consensus 641 -~~t~vfa~sdrP~viY~~n~ 660 (1096)
T KOG1897|consen 641 -SRTAVFALSDRPTVIYSSNG 660 (1096)
T ss_pred -CceEEEEeCCCCEEEEecCC
Confidence 35566777777777777764
No 415
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=51.23 E-value=43 Score=42.71 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCEEEEe-cCCCc----EEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 497 APVTAMCFNQPGDLLLAG-YADGH----VTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG-~~dG~----I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
-.+...++||||++||-+ +..|. |+++|+.+|+.+... .....-.++.|.++
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~~~~~~~W~~d 180 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENPKFSSVSWSDD 180 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEEESEEEEECTT
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--ccccccceEEEeCC
Confidence 345578999999999977 44455 999999999765321 11222234899987
No 416
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=50.90 E-value=31 Score=44.26 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=62.3
Q ss_pred CcceeeeEEecCChhHHHHhhhccccccCCC--cEEEEE-cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRRDHGS--PQVLAV-HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG 492 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~--pt~ia~-s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~ 492 (1950)
|-+--++|+++|--. +..|.--+++.-.+. -.|++. ...|||+|+.+|-|++||.= + ..+|+..
T Consensus 533 GlS~~svFrIDPR~~-gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g------~rAKtal----- 599 (776)
T COG5167 533 GLSDYSVFRIDPRAR-GNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-G------KRAKTAL----- 599 (776)
T ss_pred eecccceEEeccccc-CCceeeeeehhccccccccccccccCceEEEecCCCceeeehhh-c------chhhhcC-----
Confidence 455566888877422 245544444432222 133333 34799999999999999961 1 2333322
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
++...+|--|..+.+|+++++-.. ..+-|-|+.
T Consensus 600 P~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 600 PGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 335568999999999999988764 567788875
No 417
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=50.20 E-value=43 Score=43.40 Aligned_cols=87 Identities=10% Similarity=0.123 Sum_probs=56.5
Q ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC-----------CC
Q 000170 450 LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA-----------DG 518 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~-----------dG 518 (1950)
-.|.|.|+++=...| |.+|--... . ++-.+ .+-.|.-+.|||..+||++=+. ..
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~f------~--r~~RF------~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGESF------D--RIQRF------YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCccH------H--HHHhc------cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 344568888887776 677843210 0 00011 2334999999999999998542 25
Q ss_pred cEEEEECCCCceeeeeccC-cCCCeEEE-EEecCC
Q 000170 519 HVTVWDVQRASAAKVITGE-HTSPVVHT-LFLGQD 551 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~-H~~~I~~v-~F~~d~ 551 (1950)
+++|||+.+|...+++... -...++.+ .|+.|+
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 6999999999988877521 23445554 577764
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=49.99 E-value=31 Score=30.73 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.6
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeC
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPG 471 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~ 471 (1950)
.+++++-+| ++||+|+.+|.|.+|.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 467888877 79999999999999976
No 419
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=49.98 E-value=16 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=21.6
Q ss_pred cccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
+|..|+++|... ..++..=|..||..|.
T Consensus 1 ~C~~C~~~i~~~----~~~~~~~~~~~H~~Cf 28 (39)
T smart00132 1 KCAGCGKPIRGG----ELVLRALGKVWHPECF 28 (39)
T ss_pred CccccCCcccCC----cEEEEeCCccccccCC
Confidence 589999998775 2345556899999996
No 420
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=49.49 E-value=3.5e+02 Score=31.79 Aligned_cols=110 Identities=16% Similarity=0.091 Sum_probs=62.9
Q ss_pred cEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC-------
Q 000170 447 PQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD------- 517 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d------- 517 (1950)
|..+++. ...+.++...| +.++|.+.+ +...+...............+++.+||...++....
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g-------~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~ 113 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGG-IAVVDPDTG-------KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID 113 (246)
T ss_dssp EEEEEEECTTSEEEEEETTC-EEEEETTTT-------EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG
T ss_pred CceEEEEccCCEEEEEEcCc-eEEEecCCC-------cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc
Confidence 6666776 36677776655 455587432 112222111122245668899999999977776544
Q ss_pred -CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 518 -GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 518 -G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
|.|..++.. ++...... .-..-..|+|+++ +.++.++--..+.||..
T Consensus 114 ~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~d-----g~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 114 PGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPD-----GKTLYVADSFNGRIWRF 161 (246)
T ss_dssp SEEEEEEETT-SEEEEEEE--EESSEEEEEEETT-----SSEEEEEETTTTEEEEE
T ss_pred ccceEEECCC-CeEEEEec--CcccccceEECCc-----chheeecccccceeEEE
Confidence 668888888 66544443 2345688999987 34454444344443333
No 421
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=49.28 E-value=44 Score=43.05 Aligned_cols=89 Identities=15% Similarity=0.164 Sum_probs=63.1
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC---------
Q 000170 448 QVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG--------- 518 (1950)
Q Consensus 448 t~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG--------- 518 (1950)
.|..+.|.|++.-+..| |.+|+.-. ..++..+ .+.-|.-+.|||.|+||.+=..-+
T Consensus 38 ~~~SP~G~~l~~~~~~~-V~~~~g~~--------~~~l~~~------~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 38 VSESPLGTYLFSEHAAG-VECWGGPS--------KAKLVRF------RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred eeecCcchheehhhccc-eEEccccc--------hhheeee------ecCCceecccCcccceeeeeccCCccChhhccC
Confidence 45666678999888776 78886421 1122221 245699999999999999865444
Q ss_pred ------cEEEEECCCCceeeeeccCcCCC--eE-EEEEecCCC
Q 000170 519 ------HVTVWDVQRASAAKVITGEHTSP--VV-HTLFLGQDS 552 (1950)
Q Consensus 519 ------~I~lWDl~~g~~l~tl~~~H~~~--I~-~v~F~~d~~ 552 (1950)
++++||..+|..+..+. +-..+ .+ -+.|+-+|.
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~D~ 144 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSIDDK 144 (561)
T ss_pred CccccCceeEEeccCceeEeecc-ccCCcccccceeeeeecch
Confidence 49999999999988876 44444 66 667887753
No 422
>PF04641 Rtf2: Rtf2 RING-finger
Probab=47.70 E-value=9.8 Score=45.81 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=37.0
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
......|.++++.+.+. ..-+.+..|||+|=..|+. +- . ....||+|...-
T Consensus 110 ~~~~~~CPvt~~~~~~~--~~fv~l~~cG~V~s~~alk-e~-k----~~~~Cp~c~~~f 160 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGK--HKFVYLRPCGCVFSEKALK-EL-K----KSKKCPVCGKPF 160 (260)
T ss_pred CCceeECCCCCcccCCc--eeEEEEcCCCCEeeHHHHH-hh-c----ccccccccCCcc
Confidence 34467899999999553 2346667999999999995 22 1 236799999755
No 423
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.67 E-value=7.6 Score=49.71 Aligned_cols=47 Identities=28% Similarity=0.452 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCC-CCCCCCCCCcCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSS-KSNLSGCPLCMP 1808 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~-~~~~~~CpiC~~ 1808 (1950)
...|.+|-.+=.- .+.-.|||+|.-.|+- +-.... ......||+|..
T Consensus 186 ~~~CPICL~~~~~------p~~t~CGHiFC~~CiL-qy~~~s~~~~~~~CPiC~s 233 (513)
T KOG2164|consen 186 DMQCPICLEPPSV------PVRTNCGHIFCGPCIL-QYWNYSAIKGPCSCPICRS 233 (513)
T ss_pred CCcCCcccCCCCc------ccccccCceeeHHHHH-HHHhhhcccCCccCCchhh
Confidence 6889999753222 3445699999999984 321111 123468999975
No 424
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=46.94 E-value=1.4e+02 Score=37.39 Aligned_cols=99 Identities=13% Similarity=0.063 Sum_probs=58.9
Q ss_pred EEEEeCC----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC---CcEEEEECCC--
Q 000170 457 IAVGMSK----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD---GHVTVWDVQR-- 527 (1950)
Q Consensus 457 IAvGts~----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d---G~I~lWDl~~-- 527 (1950)
+.|||.. +-|.+|++-. .+++... .+.-...+.+|-|+|++++++|-++..+ |.|.-|.+..
T Consensus 5 ~YiGtyT~~~s~gI~v~~ld~-------~~g~l~~--~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~ 75 (346)
T COG2706 5 VYIGTYTKRESQGIYVFNLDT-------KTGELSL--LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD 75 (346)
T ss_pred EEEeeecccCCCceEEEEEeC-------cccccch--hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC
Confidence 4455443 4599998721 2222111 1223467889999999999999888665 7777777764
Q ss_pred Cceee---eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 528 ASAAK---VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 528 g~~l~---tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
|+... ....|+.. ++|++.++ ++.++++.-..|.|-.
T Consensus 76 G~Lt~ln~~~~~g~~p--~yvsvd~~-----g~~vf~AnY~~g~v~v 115 (346)
T COG2706 76 GRLTFLNRQTLPGSPP--CYVSVDED-----GRFVFVANYHSGSVSV 115 (346)
T ss_pred CeEEEeeccccCCCCC--eEEEECCC-----CCEEEEEEccCceEEE
Confidence 55421 11113322 88888876 5566666555554433
No 425
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=46.50 E-value=7.9 Score=35.84 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=28.0
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCC--cC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPL--CM 1807 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~Cpi--C~ 1807 (1950)
..+..|.+..+++..+ ++=-.|||+|=...+. +-++. .....||+ |.
T Consensus 9 ~~~~~CPiT~~~~~~P-----V~s~~C~H~fek~aI~-~~i~~--~~~~~CPv~GC~ 57 (57)
T PF11789_consen 9 TISLKCPITLQPFEDP-----VKSKKCGHTFEKEAIL-QYIQR--NGSKRCPVAGCN 57 (57)
T ss_dssp B--SB-TTTSSB-SSE-----EEESSS--EEEHHHHH-HHCTT--TS-EE-SCCC-S
T ss_pred EeccCCCCcCChhhCC-----cCcCCCCCeecHHHHH-HHHHh--cCCCCCCCCCCC
Confidence 4478999999988876 6667999999999985 44421 24578998 64
No 426
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=46.40 E-value=33 Score=41.45 Aligned_cols=77 Identities=17% Similarity=0.327 Sum_probs=53.3
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc-eee-eec--cCcC------------CCeEEEEEecCCCccCCce
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS-AAK-VIT--GEHT------------SPVVHTLFLGQDSQVTRQF 558 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~-~l~-tl~--~~H~------------~~I~~v~F~~d~~~~~~~~ 558 (1950)
....||++-|..-|.|||+|...|.|.++.-.+.. |-. -++ .+|. ..|..|.|..+. +|.-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t---~r~h 101 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT---GRNH 101 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC---Ccce
Confidence 35679999999999999999999999999987643 321 111 1442 468899999763 3444
Q ss_pred EEEEecCCceEEEEcccccccccce
Q 000170 559 KAVTGDTKGLVQLHSLSVVPLLNRF 583 (1950)
Q Consensus 559 ~~vssD~~G~V~~h~ft~~rl~~~~ 583 (1950)
-++++.++ + +++|..|
T Consensus 102 FLlstNdk--------t-iKlWKiy 117 (460)
T COG5170 102 FLLSTNDK--------T-IKLWKIY 117 (460)
T ss_pred EEEecCCc--------e-eeeeeee
Confidence 45555554 3 6788655
No 427
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=46.03 E-value=11 Score=49.71 Aligned_cols=49 Identities=18% Similarity=0.402 Sum_probs=27.9
Q ss_pred Cccccccc-ccccCC-CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1756 LLCCICNC-LLTKNS-SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1756 ~~C~iC~k-~L~~~~-~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
.+|++|.. .+..+. ......-=.||++||..|+.. ....||.|.+-.+.
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r--------~s~~CPrC~R~q~r 562 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR--------KSPCCPRCERRQKR 562 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc--------cCCCCCchHHHHHH
Confidence 47888842 111111 111233347999999999853 12349999874433
No 428
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=45.54 E-value=88 Score=40.32 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=43.1
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.++|+.|++||+|++||.=..+|++.++...-.+.+..+...-......+.|+|+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 5799999999999999999999999998876555544443232356789999975
No 429
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=43.76 E-value=1.9e+02 Score=37.58 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
..-+|+.+++||-|++|++.++.| |.+|+-..+..+..+ -| .-|-.+.|+|.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~ 82 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RH-PDVKYLDFSPN 82 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeee--ec-CCceecccCcc
Confidence 456899999999999999999755 799999887655444 34 57888999986
No 430
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=43.56 E-value=15 Score=33.61 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=25.6
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
...+|.+||+++.... +.++--.||--||..|-.
T Consensus 4 ~~~~C~~Cg~~~~~~d--DiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGD--DIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCC--CEEECCCCCCcccHHHHh
Confidence 3578999999997542 234445699999999973
No 431
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.30 E-value=54 Score=35.08 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccc-------cccccccccCCCCCCCCCCCcCCCcCccccccccee
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHI-------QCELLENESSSKSNLSGCPLCMPKKNTQRSRNKTVL 1821 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~-------~CL~~en~g~~~~~~~~CpiC~~~~~~~~~~~~~~~ 1821 (1950)
....|.||.+.=..+ +|||..|. +|-..-.+.+++ ..|.|..|.+..+.-...++-+|
T Consensus 64 ddatC~IC~KTKFAD---------G~GH~C~YCq~r~CARCGGrv~lrsNK-v~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD---------GCGHNCSYCQTRFCARCGGRVSLRSNK-VMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred cCcchhhhhhccccc---------ccCcccchhhhhHHHhcCCeeeeccCc-eEEeccCCcHHHHHHHhcchHHH
Confidence 357899999855444 68887664 332111111111 23788888876655443454444
No 432
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.08 E-value=3.5e+02 Score=34.69 Aligned_cols=25 Identities=20% Similarity=-0.011 Sum_probs=18.8
Q ss_pred HHHHHHH---HHHHcCCHHHHHHHHHhc
Q 000170 1314 FYQVCGL---IHTIRYNYLAALDSYMKD 1338 (1950)
Q Consensus 1314 FyrVL~~---LY~~~~qY~~aL~~yL~D 1338 (1950)
+.++|.. -|++.|+.+++|+||++.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 3344444 488999999999999984
No 433
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=42.25 E-value=8.5 Score=53.41 Aligned_cols=38 Identities=32% Similarity=0.603 Sum_probs=25.9
Q ss_pred eEEEecCCCccccccccc--ccccCCCC-----CCCCCCCcCCCcCc
Q 000170 1773 QIRVFNCGHATHIQCELL--ENESSSKS-----NLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1773 ~ivVF~CGHafH~~CL~~--en~g~~~~-----~~~~CpiC~~~~~~ 1812 (1950)
..|-..|||.||..|... || .+.| ....||+|..+-++
T Consensus 3501 P~IqL~C~HiFHlqC~R~vLE~--RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3501 PAIQLDCSHIFHLQCCRRVLEN--RWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cceecCCccchhHHHHHHHHHh--cccCCeeEEeeeecccccchhhh
Confidence 367789999999999863 22 1111 13589999876554
No 434
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=41.69 E-value=68 Score=37.82 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=61.0
Q ss_pred cccCcceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec
Q 000170 413 VRRGSTTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG 489 (1950)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~ 489 (1950)
++.+.-++..+.|+.-+.++....+- .-.+-|+-|.+ .+.++|..+|.|+-|+.+-+ +....
T Consensus 75 vG~~dg~v~~~n~n~~g~~~d~~~s~-----~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~- 139 (238)
T KOG2444|consen 75 VGTSDGAVYVFNWNLEGAHSDRVCSG-----EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---------KVLGY- 139 (238)
T ss_pred eecccceEEEecCCccchHHHhhhcc-----cccceeccccccccceeEEeccCCceeeeccccC---------ceeee-
Confidence 34456677888887666777665432 22345555554 48999999999999998531 22221
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeee
Q 000170 490 LLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 490 ~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
. ..|.. .++.++++-+.++.|.+|++.....++..
T Consensus 140 -~-g~h~~--------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W 174 (238)
T KOG2444|consen 140 -V-GQHNF--------ESGEELIVVGSDEFLKIADTSHDRVLKKW 174 (238)
T ss_pred -e-ccccC--------CCcceeEEecCCceEEeeccccchhhhhc
Confidence 1 12331 46667777777777888877776655433
No 435
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=40.76 E-value=1.4e+02 Score=35.82 Aligned_cols=74 Identities=9% Similarity=0.159 Sum_probs=48.9
Q ss_pred CCCCCeEEEEEcCC-CCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 494 RSPAPVTAMCFNQP-GDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 494 ~h~~~VtsLafS~D-G~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
+-...|+.|+|+|| ++..|+....+.|.-.|+ +|++++.+.-.=-.-.=.|++.++ ...+++.+..+.++.+
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~------~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN------GRYVLSEERDQRLYIF 91 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST------TEEEEEETTTTEEEEE
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC------CEEEEEEcCCCcEEEE
Confidence 34456999999997 668899999999999997 588888775211245667778865 3567777667766665
Q ss_pred cc
Q 000170 573 SL 574 (1950)
Q Consensus 573 ~f 574 (1950)
..
T Consensus 92 ~~ 93 (248)
T PF06977_consen 92 TI 93 (248)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 436
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=38.84 E-value=23 Score=32.04 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=27.9
Q ss_pred ccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1758 CCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1758 C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
|..|+++|.... +++-.-|..||..|. .|-.|...-
T Consensus 1 C~~C~~~I~~~~----~~~~~~~~~~H~~Cf-------------~C~~C~~~l 36 (58)
T PF00412_consen 1 CARCGKPIYGTE----IVIKAMGKFWHPECF-------------KCSKCGKPL 36 (58)
T ss_dssp BTTTSSBESSSS----EEEEETTEEEETTTS-------------BETTTTCBT
T ss_pred CCCCCCCccCcE----EEEEeCCcEEEcccc-------------ccCCCCCcc
Confidence 889999999653 554578999999996 488887543
No 437
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.71 E-value=1.2e+02 Score=37.44 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=39.2
Q ss_pred CCCCeEEEEEcCCCCEEEEecCC-CcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYAD-GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~d-G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
..+-|-||||+.||.++|+.+-. |.+.+||..+|+.+.... -.-+..|+-.++
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~ 268 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDD 268 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCC
Confidence 46789999999999988666655 558999999999865432 345666665543
No 438
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=38.13 E-value=1e+02 Score=40.31 Aligned_cols=92 Identities=14% Similarity=0.220 Sum_probs=60.5
Q ss_pred CCCCeEEEEEcCCCCE--EEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 495 SPAPVTAMCFNQPGDL--LLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~--LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
..|||.++.||++|+- ++-|+.=-.|.|+|+. |.++..+- .++=..+-|++- +|.++++|=.. .
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~-----g~ii~lAGFGN-----L 334 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPH-----GNIILLAGFGN-----L 334 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC---CCCccceEECCC-----CCEEEEeecCC-----C
Confidence 3799999999999975 4557888899999986 66655442 467788889985 78888877332 1
Q ss_pred cccccccccceeeeEEeecCCC--ccccEEEeec
Q 000170 573 SLSVVPLLNRFSIKTQCLLDGQ--KTGIVLSASP 604 (1950)
Q Consensus 573 ~ft~~rl~~~~t~~s~~ll~g~--~~g~Vla~sp 604 (1950)
.+ -+-+|++-. .+++... ...+++.++|
T Consensus 335 ~G-~mEvwDv~n---~K~i~~~~a~~tt~~eW~P 364 (566)
T KOG2315|consen 335 PG-DMEVWDVPN---RKLIAKFKAANTTVFEWSP 364 (566)
T ss_pred CC-ceEEEeccc---hhhccccccCCceEEEEcC
Confidence 11 144555433 2322221 3445677877
No 439
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.88 E-value=2e+02 Score=35.35 Aligned_cols=77 Identities=16% Similarity=0.286 Sum_probs=53.9
Q ss_pred CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec------CCCcEEEEECCCCceeeeec
Q 000170 462 SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY------ADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 462 s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~------~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.-..|-+||... . .|...+.+-.|.|++|.|..+.+.+++|. ....+..||..+.+- ..+.
T Consensus 14 ~C~~lC~yd~~~----------~--qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~ 80 (281)
T PF12768_consen 14 PCPGLCLYDTDN----------S--QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLG 80 (281)
T ss_pred CCCEEEEEECCC----------C--EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecC
Confidence 344578898632 1 23335556789999999998888888885 577899999998763 2332
Q ss_pred c----CcCCCeEEEEEecCC
Q 000170 536 G----EHTSPVVHTLFLGQD 551 (1950)
Q Consensus 536 ~----~H~~~I~~v~F~~d~ 551 (1950)
+ .-.++|+.+.+...+
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d 100 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISND 100 (281)
T ss_pred CcccccCCCcEEEEEeeccC
Confidence 2 235789999887653
No 440
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=35.65 E-value=3.9e+02 Score=34.08 Aligned_cols=111 Identities=16% Similarity=0.172 Sum_probs=73.8
Q ss_pred CCcEEEEEcC--C-EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC---CC
Q 000170 445 GSPQVLAVHP--S-FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA---DG 518 (1950)
Q Consensus 445 G~pt~ia~s~--~-~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~---dG 518 (1950)
..|..+++++ . ..+....++.|.++|.... + ++....-+ ..-..++|++||+.+-++.. ++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---------~--~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---------T--VLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---------c--eeeEeeec--cCCceEEECCCCCEEEEEecccCCc
Confidence 4578888875 3 3444445688999985321 1 11100111 14567899999987777766 78
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+|.+.|-.+++.++++..|- .+ ..++|.++ +..+.++-...+.+...+..
T Consensus 141 ~vsvid~~t~~~~~~~~vG~-~P-~~~a~~p~-----g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGN-TP-TGVAVDPD-----GNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred eEEEEeCCCCeEEEEEecCC-Cc-ceEEECCC-----CCeEEEEecCCCeEEEEeCC
Confidence 99999999999988875443 34 89999987 44566666567777776654
No 441
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.50 E-value=12 Score=44.52 Aligned_cols=42 Identities=26% Similarity=0.569 Sum_probs=33.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
...|.+|-..+..+ ++..|||.|-..|+.. . .. ....||.|.
T Consensus 13 ~~~C~iC~~~~~~p------~~l~C~H~~c~~C~~~-~-~~---~~~~Cp~cr 54 (386)
T KOG2177|consen 13 ELTCPICLEYFREP------VLLPCGHNFCRACLTR-S-WE---GPLSCPVCR 54 (386)
T ss_pred cccChhhHHHhhcC------ccccccchHhHHHHHH-h-cC---CCcCCcccC
Confidence 46899999888776 6789999999999952 1 11 237999999
No 442
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.51 E-value=17 Score=46.13 Aligned_cols=49 Identities=27% Similarity=0.603 Sum_probs=36.7
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...+...|++|...++.+ ++-.|||+|-..|+. ..+. ....||.|.-.-
T Consensus 80 ~~~sef~c~vc~~~l~~p------v~tpcghs~c~~Cl~-r~ld----~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPP------VVTPCGHSFCLECLD-RSLD----QETECPLCRDEL 128 (398)
T ss_pred cccchhhhhhhHhhcCCC------ccccccccccHHHHH-HHhc----cCCCCccccccc
Confidence 336678999998888886 455999999999974 3333 357999997644
No 443
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=34.14 E-value=86 Score=33.30 Aligned_cols=52 Identities=15% Similarity=0.320 Sum_probs=35.8
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|..|++++..-. +...+-..|+|-+-..|-.. . .....|.|.+|....
T Consensus 53 ~~~~C~~C~~~fg~l~-~~~~~C~~C~~~VC~~C~~~-~---~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLF-NRGRVCVDCKHRVCKKCGVY-S---KKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTS-TTCEEETTTTEEEETTSEEE-T---SSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccC-CCCCcCCcCCccccCccCCc-C---CCCCCEEChhhHHHH
Confidence 4679999999875331 34588899999999999753 1 122468999998644
No 444
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=34.03 E-value=24 Score=42.41 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=39.3
Q ss_pred cccccccccccCC--------CCCeEEEecCCC--cccccccccccccCCCCCCCCCCCcCCCcCc-c--cccccceeec
Q 000170 1757 LCCICNCLLTKNS--------SSFQIRVFNCGH--ATHIQCELLENESSSKSNLSGCPLCMPKKNT-Q--RSRNKTVLAE 1823 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~--------~~~~ivVF~CGH--afH~~CL~~en~g~~~~~~~~CpiC~~~~~~-~--~~~~~~~~~~ 1823 (1950)
.|.+=-..|.-+. .....|...||| +||..=.. +|.|+ ..-.||+|..-..- + -|--.++++.
T Consensus 292 QCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H~WG~~-e~~g~---~~r~CPmC~~~gp~V~L~lG~E~~f~vD 367 (429)
T KOG3842|consen 292 QCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYHNWGVR-ENTGQ---RERECPMCRVVGPYVPLWLGCEAGFYVD 367 (429)
T ss_pred CCCcccceeecccccccccccccCCeEEEeccccccccccccc-cccCc---ccCcCCeeeeecceeeeeccccceeEec
Confidence 3666555554321 234689999999 59987764 56665 34689999864432 1 2233355555
Q ss_pred CCc
Q 000170 1824 SGL 1826 (1950)
Q Consensus 1824 ~~~ 1826 (1950)
.|-
T Consensus 368 ~G~ 370 (429)
T KOG3842|consen 368 AGP 370 (429)
T ss_pred CCC
Confidence 553
No 445
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=33.77 E-value=4.8e+02 Score=32.44 Aligned_cols=92 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred CCcEE-EEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 445 GSPQV-LAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 445 G~pt~-ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
|++.. .+.....+.+.+..|.|..=.= .++... .......+.++.+..++||+++|+|..-.-..-|
T Consensus 104 gs~~~i~~l~~~~~~l~~~~G~iy~T~D----------gG~tW~--~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~ 171 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAGDRGAIYRTTD----------GGKTWQ--AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSW 171 (302)
T ss_dssp S-EEEEEEEETTEEEEEETT--EEEESS----------TTSSEE--EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE
T ss_pred CCeeEEEEcCCCcEEEEcCCCcEEEeCC----------CCCCee--EcccCCcceeEeEEECCCCcEEEEECcccEEEEe
Confidence 44433 3334455666667787665421 112121 1112346889999999999999999654445688
Q ss_pred ECCCCc-eeeeeccCcCCCeEEEEEecC
Q 000170 524 DVQRAS-AAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 524 Dl~~g~-~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|--... ..+.. .-..+|-++.|.++
T Consensus 172 ~~G~~~w~~~~r--~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 172 DPGQTTWQPHNR--NSSRRIQSMGFSPD 197 (302)
T ss_dssp -TT-SS-EEEE----SSS-EEEEEE-TT
T ss_pred cCCCccceEEcc--CccceehhceecCC
Confidence 854321 11111 22578999999986
No 446
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=33.72 E-value=17 Score=35.11 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=31.3
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
|....|.+|+..+..+ |+-.|||+|=..|+.. -+.. ....||+|..
T Consensus 2 P~~f~CpIt~~lM~dP------Vi~~~G~tyer~~I~~-~l~~---~~~~~P~t~~ 47 (73)
T PF04564_consen 2 PDEFLCPITGELMRDP------VILPSGHTYERSAIER-WLEQ---NGGTDPFTRQ 47 (73)
T ss_dssp SGGGB-TTTSSB-SSE------EEETTSEEEEHHHHHH-HHCT---TSSB-TTT-S
T ss_pred CcccCCcCcCcHhhCc------eeCCcCCEEcHHHHHH-HHHc---CCCCCCCCCC
Confidence 5667899999988886 5679999999999852 2221 2478999954
No 447
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=33.63 E-value=1.4e+03 Score=31.06 Aligned_cols=64 Identities=17% Similarity=0.341 Sum_probs=45.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC-CCcEEEEECCCCc
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA-DGHVTVWDVQRAS 529 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~-dG~I~lWDl~~g~ 529 (1950)
..++|=|.+..=++++++. |+...|. .-...|-|-|-||.+||++|+++-. .=+-.+||-...+
T Consensus 125 ~iL~VLT~~dvSV~~sV~~-----d~srVka------Di~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 125 AILTVLTARDVSVLPSVHC-----DSSRVKA------DIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred ceEEEEecCceeEeeeeee-----CCceEEE------eccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 5799999998888888743 4433321 1235788999999999998877633 4568999976543
No 448
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=33.61 E-value=4e+02 Score=36.32 Aligned_cols=109 Identities=17% Similarity=0.289 Sum_probs=62.8
Q ss_pred ccccCCCcEEEEEcC-CEEEEEeCCC-cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEE--cCCCC-EEEEe
Q 000170 440 FRRDHGSPQVLAVHP-SFIAVGMSKG-AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCF--NQPGD-LLLAG 514 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~-~~IAvGts~G-~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLaf--S~DG~-~LasG 514 (1950)
|..+-..|+.+.-+. +.+|+-.++| .+.|||.+.+. +-..... ...++|..++| .|||+ .||+|
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~----------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVG 93 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV----------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVG 93 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE----------EEEeeee-cCCCceeeceeeecCCCCEEEEEE
Confidence 334444555554433 4455544444 57899986421 1111111 24788999998 47777 45556
Q ss_pred cCCCcEEEEECCCC---------ceeeeec-cCcC-CCeEEEEEecCCCccCCceEEEEecCC
Q 000170 515 YADGHVTVWDVQRA---------SAAKVIT-GEHT-SPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g---------~~l~tl~-~~H~-~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+ ..+|.|+-=.+. ..++.+. ..|+ .+|....|.++| .++|++..+
T Consensus 94 f-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G------~LvV~sGNq 149 (631)
T PF12234_consen 94 F-PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG------TLVVGSGNQ 149 (631)
T ss_pred c-CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC------eEEEEeCCE
Confidence 5 678888754321 2334331 2454 789999999863 577777665
No 449
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=33.31 E-value=20 Score=47.10 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=0.0
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEe----cCCCcEEEEECCCC
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAG----YADGHVTVWDVQRA 528 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG----~~dG~I~lWDl~~g 528 (1950)
+|+|.++|.|-+-..+. .......+. +++..+.|++||++ |..+||+| -.|-.+.|||+.++
T Consensus 73 lavG~atG~I~l~s~r~-----~hdSs~E~t-----p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ 139 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRH-----PHDSSAEVT-----PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSL 139 (783)
T ss_pred hhhccccCceEEeecCC-----cccccceec-----ccccccccccccccccHHHHHhhhhhhcccCCccceecccc
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=33.26 E-value=2.8e+02 Score=30.41 Aligned_cols=115 Identities=16% Similarity=0.118 Sum_probs=60.6
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEc-----CCCCEEEEecCCCcEEEEECCCCcee
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFN-----QPGDLLLAGYADGHVTVWDVQRASAA 531 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS-----~DG~~LasG~~dG~I~lWDl~~g~~l 531 (1950)
||.+|+-|+|.|++..........++.....|. -...|+||+-- .+.+.|+.|+. -++..||+.+..-+
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-----in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~ 86 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLN-----INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL 86 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEE-----CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchh
Confidence 788899999999986321100000000001221 24567777643 35778898885 67899999887643
Q ss_pred eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccc
Q 000170 532 KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLN 581 (1950)
Q Consensus 532 ~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~ 581 (1950)
-- ..-...|..+.|-.-+. .....+++++...-.-|-+.+. -.+|.
T Consensus 87 Fy--ke~~DGvn~i~~g~~~~-~~~~l~ivGGncsi~Gfd~~G~-e~fWt 132 (136)
T PF14781_consen 87 FY--KEVPDGVNAIVIGKLGD-IPSPLVIVGGNCSIQGFDYEGN-EIFWT 132 (136)
T ss_pred hh--hhCccceeEEEEEecCC-CCCcEEEECceEEEEEeCCCCc-EEEEE
Confidence 11 11224555554421100 1244666666665444444443 34553
No 451
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=32.84 E-value=1.1e+02 Score=38.35 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCC-EEEE-ecCCCcEEEEECCCCceeeeec
Q 000170 497 APVTAMCFNQPGD-LLLA-GYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 497 ~~VtsLafS~DG~-~Las-G~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.++.+|++|.|.+ +|.+ ...+|.+.+||..+|+.++++.
T Consensus 289 ~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 289 HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 4688999999988 4433 3468999999999999998885
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=32.81 E-value=1.3e+02 Score=25.05 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCCCEEEE-ecCCCcEEEEECCCCceeeeeccC
Q 000170 506 QPGDLLLA-GYADGHVTVWDVQRASAAKVITGE 537 (1950)
Q Consensus 506 ~DG~~Las-G~~dG~I~lWDl~~g~~l~tl~~~ 537 (1950)
|||++|.+ ...++.|.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 56775555 556899999999999888777543
No 453
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=32.49 E-value=39 Score=42.97 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcccccccccccCCCCCeEEEe--cCCCcccccccccc
Q 000170 1723 RILDTAKSLIEDDTFYTMSVLKKEASHGYAPRSLLCCICNCLLTKNSSSFQIRVF--NCGHATHIQCELLE 1791 (1950)
Q Consensus 1723 ~IL~~a~~Lle~Dl~~~l~~l~r~~~rG~~p~s~~C~iC~k~L~~~~~~~~ivVF--~CGHafH~~CL~~e 1791 (1950)
+++++....++++-|...+-+-...-..+.+....|.+|-+-......+...+|| +|.-+.|++|...+
T Consensus 158 e~fEii~t~lE~EWf~~e~~lp~k~vepi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~ 228 (669)
T COG5141 158 EAFEIIVTRLEKEWFFFEHGLPDKHVEPIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQ 228 (669)
T ss_pred HHHHHHHHHHHHHHHhhhccCccccccccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcccce
Confidence 3444445555565554443333222334455554555555444444445567777 69999999998643
No 454
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=32.43 E-value=2.5e+02 Score=36.06 Aligned_cols=104 Identities=10% Similarity=0.015 Sum_probs=65.7
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCC---CCCccCcccce--eeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKY---SAHHRDSMDSK--MMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~---~~~~~d~~~~k--~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.+-.+.|+..++ .-+.++...|.|.-|.... .+....+-+.| +.+. ...+..+-.+++.|||+|..+++=.
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy--~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY--GFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh--cccccccCccceEEccccCcccccC
Confidence 344457777665 4567777889999997642 11000000000 0000 0123456789999999999999999
Q ss_pred CCCcEEEEECCCCceeeee----ccCc-----CCCeEEEEEe
Q 000170 516 ADGHVTVWDVQRASAAKVI----TGEH-----TSPVVHTLFL 548 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl----~~~H-----~~~I~~v~F~ 548 (1950)
.|-.|++++..+|++.+.+ ++.| .-.+.+|.|.
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg 262 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG 262 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh
Confidence 9999999999999987655 2233 2356666654
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=32.32 E-value=93 Score=36.50 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=42.7
Q ss_pred CcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 446 SPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 446 ~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|+++..+| +++.++++.+.|.+|++..+ .....+ ... .-+.|..|++|.-|+||++=-.
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~-------~~~~~~---~F~-Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQE-------ECPLLC---TFS-TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccC-------CCceeE---EEc-chhheeEEEeccccceEEEEEe
Confidence 677777777 88888899999999998421 111111 111 2488999999999999987443
No 456
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=32.24 E-value=3.2e+02 Score=38.39 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=88.4
Q ss_pred eeeeEEecCChhHHHHhhhccccccCCCcEEEEE-cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC
Q 000170 419 TLGYFDVDANNTITQTIASQAFRRDHGSPQVLAV-HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA 497 (1950)
Q Consensus 419 ~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~-s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~ 497 (1950)
++-+|.++..+++-.. +...-.|+|-++.. ++.++|. =+..|++|++-. .+.+. ....+..
T Consensus 808 RIivfe~~e~~~L~~v----~e~~v~Gav~aL~~fngkllA~--In~~vrLye~t~---------~~eLr---~e~~~~~ 869 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELV----AETVVKGAVYALVEFNGKLLAG--INQSVRLYEWTT---------ERELR---IECNISN 869 (1096)
T ss_pred eEEEEEEecCCceeee----eeeeeccceeehhhhCCeEEEe--cCcEEEEEEccc---------cceeh---hhhcccC
Confidence 4556666664443222 33456778776554 3454443 345799999832 12222 1134788
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEEECC--CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 498 PVTAMCFNQPGDLLLAGYADGHVTVWDVQ--RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 498 ~VtsLafS~DG~~LasG~~dG~I~lWDl~--~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
++.+|.+...|..+|+|..=+.|.+---. .|...-.-.+-|....+.+.+..+ ...+++|..|.+|....
T Consensus 870 ~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-------d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 870 PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-------DTYLGAENSGNLFTVRK 941 (1096)
T ss_pred CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-------ceEEeecccccEEEEEe
Confidence 99999999999999999999988775444 444555555678889999999965 46788899998887653
No 457
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=30.44 E-value=4.5e+02 Score=33.44 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=42.2
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCcee
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAA 531 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l 531 (1950)
.+..+.+++.+|.+..+|.+.+ + ..|.... +....+. .++..|..+..+|.|..+|..+|+.+
T Consensus 255 ~~~~vy~~~~~g~l~ald~~tG---------~-~~W~~~~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 255 VGGVVYALAYNGNLVALDLRSG---------Q-IVWKREY----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred ECCEEEEEEcCCeEEEEECCCC---------C-EEEeecC----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEE
Confidence 3567778888999999998542 2 2332111 1122222 25777888889999999999999764
No 458
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=30.38 E-value=54 Score=32.84 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=51.1
Q ss_pred HHHHHHhhcCchHHHHHHhhCCCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhh
Q 000170 1479 LYLELLCRYERDSVLKFLETFDSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELND 1543 (1950)
Q Consensus 1479 lYIeLLCqydP~~Vl~fLqt~~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~ 1543 (1950)
.=..|.|..+|..|++||--...=+.|++...+...|..+|+--|+.+.-+-..++...++.|.+
T Consensus 10 ~r~~l~~~l~~~~il~~L~~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~r~~~Wf~~Fl~AL~~ 74 (84)
T cd08789 10 RRVRVFFHIDVEEVLPYLTCLTAEDKERIQAAENNSGNIKAAWTLLDTLVRRDNWLEPFLDALRE 74 (84)
T ss_pred hhHHHHhcCcHHHHHhhCCcCCHHHHHHHHHHHhcCChHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 34567788999999999984333456777777778899999999998888888888888777654
No 459
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=29.82 E-value=20 Score=43.56 Aligned_cols=48 Identities=29% Similarity=0.631 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccc-cccccCCCCCCCCCCCcCCCcCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL-LENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~-~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
+..|.||-..++. ..+++|||-...-|.. ...+- ....|++|....++
T Consensus 61 n~~C~ICA~~~TY------s~~~PC~H~~CH~Ca~RlRALY----~~K~C~~CrTE~e~ 109 (493)
T COG5236 61 NMNCQICAGSTTY------SARYPCGHQICHACAVRLRALY----MQKGCPLCRTETEA 109 (493)
T ss_pred cceeEEecCCceE------EEeccCCchHHHHHHHHHHHHH----hccCCCccccccce
Confidence 5789999988887 4689999965555543 21111 34799999986655
No 460
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=28.19 E-value=3.1e+02 Score=34.93 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=54.2
Q ss_pred EEcCCEEEEEeCC-C----cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC-------
Q 000170 451 AVHPSFIAVGMSK-G----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG------- 518 (1950)
Q Consensus 451 a~s~~~IAvGts~-G----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG------- 518 (1950)
.++++++|.+.+. | .|+++|+..+ +.+. .... ...-+.++|.+||+.+.-...+.
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---------~~l~--d~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETG---------KFLP--DGIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTT---------EEEE--EEEE--EEESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCC---------cCcC--Cccc--ccccceEEEeCCCCEEEEEEeCcccccccC
Confidence 3446899988544 3 4999998542 2111 0100 11123499999998775554333
Q ss_pred ----cEEEEECCCCcee--eeeccCcCC-CeEEEEEecCCCccCCceEEEEecCC
Q 000170 519 ----HVTVWDVQRASAA--KVITGEHTS-PVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 519 ----~I~lWDl~~g~~l--~tl~~~H~~-~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
.|..|.+.++..- -.+...... ...++..+.| ++.++|.+-.+
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-----~~~l~i~~~~~ 248 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-----GRYLFISSSSG 248 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-----SSEEEEEEESS
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-----ccEEEEEEEcc
Confidence 2888888877532 233322222 3678888876 45666655443
No 461
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.17 E-value=4.9e+02 Score=31.55 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=49.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
++++++|..+|.+.+-+++++. + +|..+..+ .=.+.+.+ .+||..+-.|+.||+...-|..+..|+..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs--------~--~w~f~~~~-~vk~~a~~-d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGS--------Q--IWNFVILE-TVKVRAQC-DFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEecchh--------h--eeeeeehh-hhccceEE-cCCCceEEEecCCCcEEEecccccceEEe
Confidence 5899999999999999987641 1 22222211 12233332 57999999999999999999999988755
Q ss_pred e
Q 000170 534 I 534 (1950)
Q Consensus 534 l 534 (1950)
.
T Consensus 131 s 131 (354)
T KOG4649|consen 131 S 131 (354)
T ss_pred c
Confidence 4
No 462
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=1.3e+03 Score=32.07 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=76.4
Q ss_pred CcceeeeEEecCChhHHHHhhhccccc-cCCCcEEEEEcCCEEEE-EeCCCcEEEEeCCCCCCccCcccceeeeecccCC
Q 000170 416 GSTTLGYFDVDANNTITQTIASQAFRR-DHGSPQVLAVHPSFIAV-GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD 493 (1950)
Q Consensus 416 ~~~~~~~~~~~~~~~iS~~i~s~~f~~-~~G~pt~ia~s~~~IAv-Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~ 493 (1950)
++..++-++|.-.+ +.--.|.. .+|.|-+++.++..+.- -+..-.|.||+... +....+.|
T Consensus 19 rk~eiy~~~W~l~d-----l~~~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG-------~lL~~~~w----- 81 (829)
T KOG2280|consen 19 RKQEIYFMKWPLTD-----LYYVYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISG-------QLLGRILW----- 81 (829)
T ss_pred hhhhhcccCCcccc-----cceeEEEecccCCceEEEecccccccccccceeEEEEeccc-------cchHHHHh-----
Confidence 45566667773322 11112222 57777777777632221 13445689998732 22222232
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccC---cCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE---HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~---H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
.++++-.|.||.|...+ +=..+|+|+++++..-.. ...+-| ..+.|..+.|..+ -+...+.+|.|+
T Consensus 82 -~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~i-e~~svg~e~~~~~I~ec~~f~~--------GVavlt~~g~v~ 150 (829)
T KOG2280|consen 82 -KHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEFI-ESNSVGFESQMSDIVECRFFHN--------GVAVLTVSGQVI 150 (829)
T ss_pred -cCCCeeeecccCCceEE-EEeccceEEEeecchhhh-cccccccccccCceeEEEEecC--------ceEEEecCCcEE
Confidence 24589999999888755 456799999999974332 221112 2356888887753 345556677777
Q ss_pred EEccc
Q 000170 571 LHSLS 575 (1950)
Q Consensus 571 ~h~ft 575 (1950)
..+..
T Consensus 151 ~i~~~ 155 (829)
T KOG2280|consen 151 LINGV 155 (829)
T ss_pred EEcCC
Confidence 77653
No 463
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=27.68 E-value=6.1e+02 Score=34.79 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceee--eeccCcCCCeEEEEEecC
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAK--VITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~--tl~~~H~~~I~~v~F~~d 550 (1950)
.+.|-.|.|+++++.+.+-..+|.|.+||...+.... .+...|+..|..=+|..+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~ 185 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVND 185 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcc
Confidence 5789999999999999999999999999994443222 444466665665577765
No 464
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=27.62 E-value=20 Score=43.38 Aligned_cols=45 Identities=29% Similarity=0.535 Sum_probs=34.0
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
.|.+|..-|.... ..+.+.+|||.-|.+|+.. +.. .. +.||+|..
T Consensus 160 ncPic~e~l~~s~--~~~~~~~CgH~~h~~cf~e--~~~--~~-y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSF--EDAGVLKCGHYMHSRCFEE--MIC--EG-YTCPICSK 204 (276)
T ss_pred CCchhHHHhcccc--ccCCccCcccchHHHHHHH--Hhc--cC-CCCCcccc
Confidence 3999987776542 3577899999999999953 222 23 99999998
No 465
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.40 E-value=65 Score=40.10 Aligned_cols=45 Identities=24% Similarity=0.585 Sum_probs=31.4
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccc-cccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL-LENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~-~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|-+|.. ...++.+=.|||.....|+. |+. .+....||-|.-.=
T Consensus 370 eLCKICae------ndKdvkIEPCGHLlCt~CLa~WQ~----sd~gq~CPFCRcEI 415 (563)
T KOG1785|consen 370 ELCKICAE------NDKDVKIEPCGHLLCTSCLAAWQD----SDEGQTCPFCRCEI 415 (563)
T ss_pred HHHHHhhc------cCCCcccccccchHHHHHHHhhcc----cCCCCCCCceeeEe
Confidence 46888863 13458888999999999996 221 12246899997543
No 466
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.36 E-value=1.1e+02 Score=37.69 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=37.9
Q ss_pred EEcCCCCEEEEe-----cCCCcEEEEECC-CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEE
Q 000170 503 CFNQPGDLLLAG-----YADGHVTVWDVQ-RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVT 562 (1950)
Q Consensus 503 afS~DG~~LasG-----~~dG~I~lWDl~-~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vs 562 (1950)
+||+||++|.+- ...|.|-+||+. +.+.+..+. .|.-.=-.+.+.+| +.+++|.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pD-----G~tLvVA 116 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPD-----GETLVVA 116 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCC-----CCEEEEE
Confidence 799999999985 557889999999 455555554 44433345667887 3456664
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=26.93 E-value=1.6e+02 Score=38.14 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred eEEEEEcCC----CCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 499 VTAMCFNQP----GDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 499 VtsLafS~D----G~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+|-=.||+- .-|+|+|+..|+|+|||-. |...++.-.+-..+|.+|.-+.+
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecC
Confidence 333445544 4489999999999999966 55556655577889999988876
No 468
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=26.52 E-value=95 Score=24.38 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHh
Q 000170 1313 HFYQVCGLIHTIRYNYLAALDSYMK 1337 (1950)
Q Consensus 1313 ~FyrVL~~LY~~~~qY~~aL~~yL~ 1337 (1950)
..+.-+..+|...|+|.+++.+|-+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4677888999999999999999876
No 469
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=26.45 E-value=16 Score=43.21 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=36.5
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCccccccccee-ecC-Ccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQRSRNKTVL-AES-GLVSK 1829 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~~~~~~~~-~~~-~~~~~ 1829 (1950)
...|..|+.-|.... +|-=.-.|+||..|. .|.+|.+.-+|-. -+| ||. +||-|
T Consensus 92 GTKCsaC~~GIpPtq----VVRkAqd~VYHl~CF-------------~C~iC~R~L~TGd----EFYLmeD~rLvCK 147 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQ----VVRKAQDFVYHLHCF-------------ACFICKRQLATGD----EFYLMEDARLVCK 147 (383)
T ss_pred CCcchhhcCCCChHH----HHHHhhcceeehhhh-------------hhHhhhcccccCC----eeEEeccceeehh
Confidence 578999987765432 444456789999995 5999998777643 444 554 34443
No 470
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=26.04 E-value=57 Score=39.39 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=26.8
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
..+..|.+|---+.. ...|++-.|-|.+|..|+.
T Consensus 113 ~p~gqCvICLygfa~---~~~ft~T~C~Hy~H~~Cla 146 (368)
T KOG4445|consen 113 HPNGQCVICLYGFAS---SPAFTVTACDHYMHFACLA 146 (368)
T ss_pred CCCCceEEEEEeecC---CCceeeehhHHHHHHHHHH
Confidence 447889999654443 3469999999999999987
No 471
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=25.56 E-value=8.7e+02 Score=33.29 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=39.4
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEec
Q 000170 496 PAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~ 549 (1950)
....+-+.-|.-++.-++....-.+.|||+..+.......-.....|.++.|+.
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts 82 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS 82 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee
Confidence 345666666777777777777778999999998865433223468999999885
No 472
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.56 E-value=90 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Q 000170 1315 YQVCGLIHTIRYNYLAALDSYMK 1337 (1950)
Q Consensus 1315 yrVL~~LY~~~~qY~~aL~~yL~ 1337 (1950)
+.-|+.+|.+.|+|++|+.+|-+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34678899999999999999977
No 473
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=25.39 E-value=71 Score=40.45 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=36.6
Q ss_pred HHHHHHhcCccccCCCcccccccccccC-----------------------------------CCCCeEEEecCCCcccc
Q 000170 1741 SVLKKEASHGYAPRSLLCCICNCLLTKN-----------------------------------SSSFQIRVFNCGHATHI 1785 (1950)
Q Consensus 1741 ~~l~r~~~rG~~p~s~~C~iC~k~L~~~-----------------------------------~~~~~ivVF~CGHafH~ 1785 (1950)
.++.+...+.|.|...+|-+|++.|.+- +....|+|-.-+--||.
T Consensus 346 d~iLrA~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~PI~P~~G~~etvRvvamdr~fHv 425 (468)
T KOG1701|consen 346 DRILRALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNPILPRDGKDETVRVVAMDRDFHV 425 (468)
T ss_pred HHHHHhcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCCccCCCCCcceEEEEEccccccc
Confidence 3445666778888888888888888641 12347999999999999
Q ss_pred cccc
Q 000170 1786 QCEL 1789 (1950)
Q Consensus 1786 ~CL~ 1789 (1950)
.|..
T Consensus 426 ~CY~ 429 (468)
T KOG1701|consen 426 NCYK 429 (468)
T ss_pred ccee
Confidence 9975
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=25.20 E-value=5.1e+02 Score=36.37 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCC-CCEEEEecCCCcEEEEEC
Q 000170 496 PAPVTAMCFNQP-GDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 496 ~~~VtsLafS~D-G~~LasG~~dG~I~lWDl 525 (1950)
..+..-++|+|. ...+|.=...|.-.+||+
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEe
Confidence 457888999975 568999999999999999
No 475
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.19 E-value=15 Score=49.53 Aligned_cols=50 Identities=32% Similarity=0.515 Sum_probs=31.8
Q ss_pred Cccccccccccc-CCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1756 LLCCICNCLLTK-NSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1756 ~~C~iC~k~L~~-~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
..|++|-..|.. +..-+.-+.-.|.|-||.+|+--=-.. +....||+|..
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S---s~~s~CPlCRs 1520 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS---SARSNCPLCRS 1520 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh---cCCCCCCcccc
Confidence 689999877752 111112345579999999999521111 13468999984
No 476
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=24.77 E-value=1.8e+02 Score=36.54 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCc----
Q 000170 463 KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEH---- 538 (1950)
Q Consensus 463 ~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H---- 538 (1950)
.|.+.|||+..+ +...+ ....+.+....|||||+++|-.. ++.|.++++.+++..+.-.+|-
T Consensus 22 ~~~y~i~d~~~~---------~~~~l----~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 22 KGDYYIYDIETG---------EITPL----TPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEETTTT---------EEEES----S-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEE
T ss_pred ceeEEEEecCCC---------ceEEC----cCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEE
Confidence 467888988431 11121 11257899999999999999998 5899999998886554333341
Q ss_pred ------------CCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 539 ------------TSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 539 ------------~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
-..=..+.|+|| +++.+.+.-|+..
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WSpd----~~~la~~~~d~~~ 124 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWSPD----SKYLAFLRFDERE 124 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE-TT----SSEEEEEEEE-TT
T ss_pred cCccceeccccccccccceEECCC----CCEEEEEEECCcC
Confidence 012245668888 4677777777763
No 477
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=24.36 E-value=38 Score=43.69 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=36.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccccc----ccccCCCCCCCCCCCcCCCcCcc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELL----ENESSSKSNLSGCPLCMPKKNTQ 1813 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~----en~g~~~~~~~~CpiC~~~~~~~ 1813 (1950)
+..|++|++--.... +..+---+|+--||+.|..- +..|. ..-.|.|-+|....+.+
T Consensus 168 n~qc~vC~~g~~~~~-NrmlqC~~C~~~fHq~Chqp~i~~~l~~D-~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAG-NRMLQCDKCRQWYHQACHQPLIKDELAGD-PFYEWFCDVCNRGPKKV 228 (464)
T ss_pred cceeeeeecCCcCcc-ceeeeecccccHHHHHhccCCCCHhhccC-ccceEeehhhccchhhc
Confidence 455999987554443 22344447999999999741 11111 22458999999877765
No 478
>PLN02189 cellulose synthase
Probab=24.08 E-value=69 Score=45.14 Aligned_cols=61 Identities=18% Similarity=0.391 Sum_probs=41.5
Q ss_pred CCCcccccccccccCCCCCeEEEec-CCCcccccccccccccCCCCCCCCCCCcCCCcCccccccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFN-CGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQRSRNK 1818 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~-CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~~~~~ 1818 (1950)
....|.+||..+........+|.-+ ||--....|..-|-+ .....||.|....+..+|-.|
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~----eg~q~CpqCkt~Y~r~kgs~~ 94 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR----EGTQNCPQCKTRYKRLKGSPR 94 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh----cCCccCcccCCchhhccCCCC
Confidence 3579999999887554344555555 777788899853321 123789999988876665333
No 479
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=24.05 E-value=36 Score=30.58 Aligned_cols=44 Identities=23% Similarity=0.412 Sum_probs=26.1
Q ss_pred cccccccccccCCCCCeEEEecCC-----CcccccccccccccCCCCCCCCCCCcC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCG-----HATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CG-----HafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
.|-+|.. ... .....+-+|. |.+|..|+.. =... .....|++|.
T Consensus 1 ~CrIC~~---~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~-W~~~--~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD---EGD-EGDPLVSPCRCKGSLKYVHQECLER-WINE--SGNKTCEICK 49 (49)
T ss_pred CccCCCC---CCC-CCCeeEeccccCCchhHHHHHHHHH-HHHH--cCCCcCCCCC
Confidence 4778865 111 2234566785 9999999962 1110 1235899994
No 480
>PLN02436 cellulose synthase A
Probab=23.91 E-value=71 Score=45.10 Aligned_cols=60 Identities=17% Similarity=0.341 Sum_probs=39.2
Q ss_pred CCCcccccccccccCCCCCeEEEec-CCCcccccccccccccCCCCCCCCCCCcCCCcCcccccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFN-CGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQRSRN 1817 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~-CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~~~~ 1817 (1950)
..++|.+||-.+........+|.-+ ||--....|..-|-+ .....||.|....+..+|-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~----eg~~~Cpqckt~Y~r~kgs~ 95 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKRIKGSP 95 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhh----cCCccCcccCCchhhccCCC
Confidence 3579999999886553334454444 666688888853221 12378999998887665433
No 481
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=23.65 E-value=50 Score=30.53 Aligned_cols=41 Identities=34% Similarity=0.662 Sum_probs=29.2
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..|-.|+..=.. =++-.|||..-..|-.+++ -..||.|...
T Consensus 8 ~~~~~~~~~~~~------~~~~pCgH~I~~~~f~~~r-------YngCPfC~~~ 48 (55)
T PF14447_consen 8 QPCVFCGFVGTK------GTVLPCGHLICDNCFPGER-------YNGCPFCGTP 48 (55)
T ss_pred eeEEEccccccc------cccccccceeeccccChhh-------ccCCCCCCCc
Confidence 567777753222 3678999999999986543 3689999763
No 482
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.41 E-value=66 Score=43.95 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=30.9
Q ss_pred HhcCccccCCCcccccccccccCCCCCeEE------EecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1746 EASHGYAPRSLLCCICNCLLTKNSSSFQIR------VFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1746 ~~~rG~~p~s~~C~iC~k~L~~~~~~~~iv------VF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
...|||++ ...|..||..+.-+..+..++ ...|+|+-|.. . .+.||.|....=.
T Consensus 375 lnRrGyap-~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~-~-----------p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 375 VPRRGYVP-SLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAA-P-----------DWRCPRCGSDRLR 434 (665)
T ss_pred ecCCCCCC-eeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCC-c-----------CccCCCCcCCcce
Confidence 35689986 467888886655432221222 24465554422 2 3689999876433
No 483
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=23.30 E-value=7.8e+02 Score=30.68 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=81.6
Q ss_pred eeEEecCChhHHHHhhhccccccCCCcEEEEEcC--CE-EEEEeCCCcEEEEeCCC-CCCccCcccceeeeecccCCCCC
Q 000170 421 GYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP--SF-IAVGMSKGAIVVVPGKY-SAHHRDSMDSKMMMLGLLGDRSP 496 (1950)
Q Consensus 421 ~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~--~~-IAvGts~G~I~vfd~k~-~~~~~d~~~~k~~~l~~~~~~h~ 496 (1950)
.+..+++...+.+.+. .+...|..||.++ +. ..+=|..+.|.-|++.. .. ...+. .... ..+.+.
T Consensus 144 ~lyr~~p~g~~~~l~~-----~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g-~~~~~--~~~~---~~~~~~ 212 (307)
T COG3386 144 SLYRVDPDGGVVRLLD-----DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG-PIGGR--RGFV---DFDEEP 212 (307)
T ss_pred eEEEEcCCCCEEEeec-----CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC-ccCCc--ceEE---EccCCC
Confidence 4667766544444332 1244566666665 34 44455568888887731 00 00111 1111 111245
Q ss_pred CCeEEEEEcCCCCEEEEecCCC-cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 497 APVTAMCFNQPGDLLLAGYADG-HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~~dG-~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
|.--.++...||.+-+++..+| .|..|+.. |+.+..+. -....+++++|-+.+ ..++.|+++..|+
T Consensus 213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG~~----~~~L~iTs~~~~~ 279 (307)
T COG3386 213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGGPD----LNTLYITSARSGM 279 (307)
T ss_pred CCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeCCC----cCEEEEEecCCCC
Confidence 6666778888999887777766 99999998 99888876 333789999999853 5688888877754
No 484
>PRK02888 nitrous-oxide reductase; Validated
Probab=23.20 E-value=5.5e+02 Score=35.01 Aligned_cols=98 Identities=18% Similarity=0.210 Sum_probs=55.6
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-cCCCcEEEEECCCCce-
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG-YADGHVTVWDVQRASA- 530 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG-~~dG~I~lWDl~~g~~- 530 (1950)
++++..++ .+.|.++|.+.. ++...+.+..-+.+ ....-|++||||+++.++ -.+++|.+.|+.+.+.
T Consensus 287 dGK~~~V~--gn~V~VID~~t~----~~~~~~v~~yIPVG----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 287 AGKFKTIG--GSKVPVVDGRKA----ANAGSALTRYVPVP----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred CCCEEEEC--CCEEEEEECCcc----ccCCcceEEEEECC----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 34555553 467999997530 00001111111122 345678999999976654 5699999999998663
Q ss_pred -----------eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 531 -----------AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 531 -----------l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
...+.. .-.=.|.+|.+++ .-...+..|+.
T Consensus 357 ~~~~~~~~~~vvaevev--GlGPLHTaFDg~G----~aytslf~dsq 397 (635)
T PRK02888 357 FDGKIKPRDAVVAEPEL--GLGPLHTAFDGRG----NAYTTLFLDSQ 397 (635)
T ss_pred hhccCCccceEEEeecc--CCCcceEEECCCC----CEEEeEeecce
Confidence 222211 2334578888763 22344555665
No 485
>PLN03218 maturation of RBCL 1; Provisional
Probab=22.71 E-value=2.2e+03 Score=31.55 Aligned_cols=81 Identities=12% Similarity=0.054 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCchhhHHHhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhc
Q 000170 958 LFDDIFSKFEAVQHRDTFLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHG 1037 (1950)
Q Consensus 958 LF~~if~~f~~~~~~~iFle~LEp~IL~g~I~~lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~ 1037 (1950)
.|..+.+.|...+....-++.++-.+..| ......+...||..|.+.|+.+..+++.-.|.-..+..|.+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G--~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv-------- 720 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQG--IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS-------- 720 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--------
Confidence 34444444444444444444444444444 22346678888999999998888877776553222333322
Q ss_pred ccchhhHHhhc
Q 000170 1038 LHGALVYLFNK 1048 (1950)
Q Consensus 1038 LydaLIYI~n~ 1048 (1950)
.|.+||..|.+
T Consensus 721 tyN~LI~gy~k 731 (1060)
T PLN03218 721 TMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHHH
Confidence 25566666655
No 486
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=8.6 Score=47.09 Aligned_cols=49 Identities=29% Similarity=0.555 Sum_probs=35.6
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
...|.+|-.-|.+. +.+-.|+|-|...|.. .++.. ....||+|..+-..
T Consensus 43 ~v~c~icl~llk~t-----mttkeClhrfc~~ci~-~a~r~---gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKKT-----MTTKECLHRFCFDCIW-KALRS---GNNECPTCRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHhh-----cccHHHHHHHHHHHHH-HHHHh---cCCCCchHHhhccc
Confidence 45799998777664 5667999999999984 33322 24689999875544
No 487
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.34 E-value=45 Score=39.66 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHh-cCcccc-CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1732 IEDDTFYTMSVLKKEA-SHGYAP-RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1732 le~Dl~~~l~~l~r~~-~rG~~p-~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
++.+++.-..++.+.. ..|+.| .+.+|..|+-.|... |..|+.. .+....||-|.+
T Consensus 172 l~~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~~---------------~~~~V~~------~d~iv~CP~CgR 229 (239)
T COG1579 172 LDPELLSEYERIRKNKKGVGVVPLEGRVCGGCHMKLPSQ---------------TLSKVRK------KDEIVFCPYCGR 229 (239)
T ss_pred cCHHHHHHHHHHHhcCCCceEEeecCCcccCCeeeecHH---------------HHHHHhc------CCCCccCCccch
Confidence 4456666666655554 556665 689999998544432 5566632 134678999975
No 488
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.08 E-value=76 Score=44.91 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=38.2
Q ss_pred CCCcccccccccccCCCCCeEEE-ecCCCcccccccccccccCCCCCCCCCCCcCCCcCccccccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRV-FNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQRSRNK 1818 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivV-F~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~~~~~ 1818 (1950)
..++|.+||..+........+|. --||--....|..-|-. .....||.|....+..+|-.|
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~----eG~q~CPqCktrYkr~kgspr 77 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKTKYKRHKGSPA 77 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhh----cCCccCCccCCchhhhcCCCC
Confidence 35799999998876533333332 23555588888853211 123789999987776655443
No 489
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=71 Score=38.53 Aligned_cols=40 Identities=30% Similarity=0.746 Sum_probs=27.4
Q ss_pred CCcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|.||-- ..-+.++..|||. ...+|-. ....||+|.+.
T Consensus 300 ~~LC~ICmD------aP~DCvfLeCGHmVtCt~CGk---------rm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMD------APRDCVFLECGHMVTCTKCGK---------RMNECPICRQY 340 (350)
T ss_pred HHHHHHHhc------CCcceEEeecCcEEeehhhcc---------ccccCchHHHH
Confidence 467999963 2335788899996 5566632 23589999753
No 490
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=21.82 E-value=1e+02 Score=39.71 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=36.9
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
..-.+.+|+.+|+|++.|+...=|.|.|+|+.++..++...
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 34569999999999999999999999999999999987775
No 491
>PLN02400 cellulose synthase
Probab=21.40 E-value=93 Score=44.10 Aligned_cols=59 Identities=15% Similarity=0.350 Sum_probs=37.0
Q ss_pred CCCcccccccccccCCCCCeEE-EecCCCcccccccccccccCCCCCCCCCCCcCCCcCccccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIR-VFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQRSR 1816 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~iv-VF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~~~ 1816 (1950)
..++|.+||..+........+| .--||--....|..-|-+ .....||.|....+..+|-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERk----eGnq~CPQCkTrYkR~Kgs 94 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERK----DGTQCCPQCKTRYRRHKGS 94 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecc----cCCccCcccCCccccccCC
Confidence 3579999999887653223332 223555578888853321 1237899999887766543
No 492
>PLN03077 Protein ECB2; Provisional
Probab=21.35 E-value=2.2e+03 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=25.5
Q ss_pred ecCHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 000170 839 LLPWKERIQVLRKAGDWMGALNMAMTLYD 867 (1950)
Q Consensus 839 llsW~drI~~Lv~~gd~~eAL~LA~~~Y~ 867 (1950)
..+|.-.|..+.+.|++.+|+.+......
T Consensus 253 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred cchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999877654
No 493
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=21.09 E-value=2e+03 Score=29.92 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=26.0
Q ss_pred EecCHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 000170 838 RLLPWKERIQVLRKAGDWMGALNMAMTLYD 867 (1950)
Q Consensus 838 ~llsW~drI~~Lv~~gd~~eAL~LA~~~Y~ 867 (1950)
...+|.-.|..+.+.|++.+|+++-...-.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~ 217 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWE 217 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456899999999999999999999877653
No 494
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.01 E-value=2.4e+02 Score=35.00 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCCcccccccc-c----ccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1754 RSLLCCICNCL-L----TKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1754 ~s~~C~iC~k~-L----~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
....|.+||.. . .........++..|+.+-|..=.. ...||-|..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~----------R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV----------RVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc----------CccCCCCCC
Confidence 35699999963 1 111112457888888777665542 368999985
No 495
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=20.78 E-value=74 Score=28.50 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=26.6
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCEL 1789 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~ 1789 (1950)
.....|..|++.||+ .....+.==.|+=.+|.+|+.
T Consensus 9 ~~~~~C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp SSTEB-TTSSSBECS-SSSCEEEETTTT-EEETTGGC
T ss_pred CCCCCCcccCcccCC-CCCCeEEECCCCChHhhhhhh
Confidence 346789999999977 334566777899999999984
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=20.53 E-value=4.9e+02 Score=37.52 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=41.4
Q ss_pred CEEEEEeC---------CCcEEEEeCCC---CCCccCc-ccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 455 SFIAVGMS---------KGAIVVVPGKY---SAHHRDS-MDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 455 ~~IAvGts---------~G~I~vfd~k~---~~~~~d~-~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.|||+||. .|.|+|||+-. .+.+... ...|.+ .-+...|+|+++| .-+|..+.+- ...|.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel----~~eE~KGtVsavc-eV~G~l~~~~--GqKI~ 1119 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKEL----YIEEQKGTVSAVC-EVRGHLLSSQ--GQKII 1119 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeee----ehhhcccceEEEE-EeccEEEEcc--CcEEE
Confidence 58999964 69999999722 1100000 011111 1134579999998 6778754433 47899
Q ss_pred EEECCCCc
Q 000170 522 VWDVQRAS 529 (1950)
Q Consensus 522 lWDl~~g~ 529 (1950)
+|++.++.
T Consensus 1120 v~~l~r~~ 1127 (1366)
T KOG1896|consen 1120 VRKLDRDS 1127 (1366)
T ss_pred EEEeccCC
Confidence 99996554
No 497
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=20.40 E-value=24 Score=44.40 Aligned_cols=73 Identities=19% Similarity=0.361 Sum_probs=43.3
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCccc--ccccceeecCCcccc-----
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQR--SRNKTVLAESGLVSK----- 1829 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~--~~~~~~~~~~~~~~~----- 1829 (1950)
.|..|+|.+.+.. .-+=.-+-.||..|. .|-.|.++-+.|+ ..+..+|-|.++.+.
T Consensus 276 iC~~C~K~V~g~~----~ac~Am~~~fHv~CF-------------tC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~ 338 (468)
T KOG1701|consen 276 ICAFCHKTVSGQG----LAVEAMDQLFHVQCF-------------TCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCN 338 (468)
T ss_pred hhhhcCCcccCcc----hHHHHhhhhhcccce-------------ehHhhhhhhccccccccCCcccchHHHHHHHHHHh
Confidence 7999999888764 122234667898884 5888887774431 133344445544432
Q ss_pred -----cCCcccccCcccccccC
Q 000170 1830 -----FSSRPQQSLGTTLHSHE 1846 (1950)
Q Consensus 1830 -----~~~~~~~~~~~~~~~~~ 1846 (1950)
+.+.--+.-|..||+|=
T Consensus 339 ~Cg~~I~d~iLrA~GkayHp~C 360 (468)
T KOG1701|consen 339 KCGEPIMDRILRALGKAYHPGC 360 (468)
T ss_pred hhhhHHHHHHHHhcccccCCCc
Confidence 22233355666788875
No 498
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.39 E-value=2.8e+02 Score=37.12 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeE-EEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 497 APVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVV-HTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~-~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
..|--+-|||-=..+|.+-++|.|.+.-++ .+.+-++. .|+-.|+ +++|.+| +..++|+--+ |.|-+|...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W~~D-----GkllaVg~kd-G~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCWRPD-----GKLLAVGFKD-GTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeeecCC-----CCEEEEEecC-CeEEEEEcc
Confidence 458888999999999999999999999998 77777775 5776666 9999998 4456665544 877777754
No 499
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=20.35 E-value=1.7e+03 Score=29.95 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHhCCHHHHHHHHHHHHh
Q 000170 1515 GITDAAAFLLERVGDVGSALLLTLSELN 1542 (1950)
Q Consensus 1515 ~i~DA~ayLLeR~Gd~~eAL~liL~~L~ 1542 (1950)
++..-++.||-++|++.+|.+++-+.+.
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3445689999999999999998876653
No 500
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=20.01 E-value=1.1e+03 Score=32.08 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q 000170 1314 FYQVCGLIHTIRYNYLAALDSYMKD 1338 (1950)
Q Consensus 1314 FyrVL~~LY~~~~qY~~aL~~yL~D 1338 (1950)
+|-|+..+|+..++|.++|.||-+-
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6999999999999999999999874
Done!