Query 000170
Match_columns 1950
No_of_seqs 348 out of 1465
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 22:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frx_A Guanine nucleotide-bind 99.5 4.8E-12 1.6E-16 150.6 30.2 144 439-606 12-158 (319)
2 2ynn_A Coatomer subunit beta'; 99.5 4.9E-12 1.7E-16 149.3 29.6 138 439-604 8-148 (304)
3 1vyh_C Platelet-activating fac 99.5 3.6E-12 1.2E-16 157.4 27.7 139 440-606 104-244 (410)
4 4gqb_B Methylosome protein 50; 99.5 3.2E-12 1.1E-16 154.8 26.4 127 443-591 81-208 (344)
5 2hes_X YDR267CP; beta-propelle 99.4 3.1E-11 1.1E-15 144.3 30.2 146 439-604 9-161 (330)
6 2xzm_R RACK1; ribosome, transl 99.4 4.6E-11 1.6E-15 143.3 31.3 123 439-573 16-146 (343)
7 3frx_A Guanine nucleotide-bind 99.4 5.9E-11 2E-15 141.2 29.8 143 439-604 60-204 (319)
8 2hes_X YDR267CP; beta-propelle 99.4 5.5E-11 1.9E-15 142.1 29.4 141 443-604 57-205 (330)
9 4ery_A WD repeat-containing pr 99.4 5.2E-11 1.8E-15 140.0 28.5 137 440-604 19-157 (312)
10 1vyh_C Platelet-activating fac 99.4 4.3E-11 1.5E-15 147.7 28.4 138 439-604 145-284 (410)
11 3dm0_A Maltose-binding peripla 99.4 3.4E-11 1.2E-15 158.5 28.7 103 440-550 378-483 (694)
12 4g56_B MGC81050 protein; prote 99.4 3.9E-11 1.3E-15 145.5 26.1 116 441-570 91-207 (357)
13 2aq5_A Coronin-1A; WD40 repeat 99.4 3.4E-11 1.2E-15 147.2 25.2 144 417-573 56-204 (402)
14 3ow8_A WD repeat-containing pr 99.4 6.6E-12 2.3E-16 150.0 18.1 134 443-604 163-298 (321)
15 3v7d_B Cell division control p 99.4 2.3E-10 8E-15 141.9 31.6 117 440-574 117-234 (464)
16 2ynn_A Coatomer subunit beta'; 99.3 1.1E-10 3.7E-15 137.7 27.2 116 440-573 51-169 (304)
17 3ow8_A WD repeat-containing pr 99.3 1.1E-10 3.6E-15 139.5 27.0 137 440-604 76-216 (321)
18 3f3f_A Nucleoporin SEH1; struc 99.3 5.8E-10 2E-14 130.0 32.6 122 440-574 7-141 (351)
19 4aow_A Guanine nucleotide-bind 99.3 4.9E-10 1.7E-14 131.8 31.4 121 439-573 33-156 (340)
20 2ymu_A WD-40 repeat protein; u 99.3 1.5E-10 5E-15 147.5 28.8 113 440-573 12-126 (577)
21 1got_B GT-beta; complex (GTP-b 99.3 2.5E-10 8.7E-15 136.8 29.1 139 439-606 50-194 (340)
22 3mkq_A Coatomer beta'-subunit; 99.3 1.1E-10 3.7E-15 155.1 28.2 138 439-604 8-148 (814)
23 3sfz_A APAF-1, apoptotic pepti 99.3 2.5E-10 8.6E-15 159.6 33.1 141 440-606 611-753 (1249)
24 3zwl_B Eukaryotic translation 99.3 6.2E-10 2.1E-14 131.7 31.5 116 440-574 28-149 (369)
25 3jrp_A Fusion protein of prote 99.3 1.6E-10 5.4E-15 137.7 25.2 146 439-606 6-157 (379)
26 3mmy_A MRNA export factor; mRN 99.3 3.7E-10 1.3E-14 133.7 27.7 117 440-574 35-158 (368)
27 4gga_A P55CDC, cell division c 99.3 3.4E-10 1.2E-14 139.6 28.1 132 447-606 108-240 (420)
28 3fm0_A Protein CIAO1; WDR39,SG 99.3 3.6E-10 1.2E-14 135.9 27.5 137 442-604 59-202 (345)
29 3vl1_A 26S proteasome regulato 99.3 3.5E-10 1.2E-14 137.9 27.7 127 453-606 108-236 (420)
30 1k8k_C P40, ARP2/3 complex 41 99.3 5.5E-10 1.9E-14 133.1 28.6 118 440-573 48-170 (372)
31 2aq5_A Coronin-1A; WD40 repeat 99.3 3.1E-10 1.1E-14 138.6 26.8 137 445-604 35-184 (402)
32 1k8k_C P40, ARP2/3 complex 41 99.3 3.3E-10 1.1E-14 135.0 26.2 141 443-604 7-150 (372)
33 1got_B GT-beta; complex (GTP-b 99.3 4.3E-11 1.5E-15 143.6 18.2 139 439-604 179-320 (340)
34 1p22_A F-BOX/WD-repeat protein 99.3 5.7E-10 1.9E-14 138.1 28.8 132 444-604 133-264 (435)
35 2xzm_R RACK1; ribosome, transl 99.3 6.2E-10 2.1E-14 133.4 28.1 142 440-604 72-221 (343)
36 4aez_A CDC20, WD repeat-contai 99.3 9.7E-10 3.3E-14 134.5 30.1 131 447-605 96-226 (401)
37 1gxr_A ESG1, transducin-like e 99.3 8.7E-10 3E-14 129.0 28.2 139 442-604 49-191 (337)
38 3fm0_A Protein CIAO1; WDR39,SG 99.3 4.9E-11 1.7E-15 143.5 18.0 142 441-604 12-158 (345)
39 3dwl_C Actin-related protein 2 99.3 7.8E-11 2.7E-15 141.7 19.4 116 441-573 8-128 (377)
40 3dm0_A Maltose-binding peripla 99.3 4.5E-10 1.5E-14 147.9 27.5 141 440-605 426-570 (694)
41 4ery_A WD repeat-containing pr 99.2 1.5E-09 5E-14 127.6 28.9 115 440-573 61-177 (312)
42 1gxr_A ESG1, transducin-like e 99.2 1.3E-09 4.5E-14 127.5 28.4 116 442-574 95-212 (337)
43 4gqb_B Methylosome protein 50; 99.2 6.4E-11 2.2E-15 143.4 17.4 136 442-603 125-264 (344)
44 1nr0_A Actin interacting prote 99.2 6.5E-10 2.2E-14 144.5 28.0 116 439-572 142-266 (611)
45 1nr0_A Actin interacting prote 99.2 5.4E-10 1.8E-14 145.2 27.1 139 439-604 54-198 (611)
46 1r5m_A SIR4-interacting protei 99.2 4.8E-10 1.6E-14 135.5 24.7 118 443-574 44-178 (425)
47 3odt_A Protein DOA1; ubiquitin 99.2 1.5E-09 5.2E-14 125.8 27.2 236 439-778 13-254 (313)
48 1r5m_A SIR4-interacting protei 99.2 1.3E-09 4.5E-14 131.6 27.7 111 444-575 108-235 (425)
49 3iz6_a 40S ribosomal protein R 99.2 1.8E-10 6.1E-15 140.5 20.2 139 439-604 61-213 (380)
50 2pm7_B Protein transport prote 99.2 1.2E-10 4.3E-15 136.8 18.2 120 440-574 5-130 (297)
51 2oaj_A Protein SNI1; WD40 repe 99.2 4.8E-10 1.6E-14 152.7 25.9 151 443-606 487-690 (902)
52 3k26_A Polycomb protein EED; W 99.2 7.1E-10 2.4E-14 131.4 24.1 142 443-606 17-171 (366)
53 1pgu_A Actin interacting prote 99.2 1.4E-09 4.7E-14 138.9 28.4 136 442-603 16-167 (615)
54 1sq9_A Antiviral protein SKI8; 99.2 7.7E-10 2.6E-14 133.5 24.7 124 439-574 11-155 (397)
55 3dwl_C Actin-related protein 2 99.2 2.4E-10 8.2E-15 137.4 19.9 121 439-574 50-175 (377)
56 3k26_A Polycomb protein EED; W 99.2 1.4E-09 4.8E-14 128.8 26.0 114 443-574 68-190 (366)
57 2pbi_B Guanine nucleotide-bind 99.2 1.1E-09 3.7E-14 132.5 25.5 138 439-604 59-204 (354)
58 3ei3_B DNA damage-binding prot 99.2 2.4E-09 8.2E-14 129.3 28.3 115 443-574 117-234 (383)
59 2ovr_B FBW7, F-BOX/WD repeat p 99.2 3.2E-09 1.1E-13 131.5 29.5 130 443-604 117-247 (445)
60 2ovr_B FBW7, F-BOX/WD repeat p 99.2 3.4E-09 1.2E-13 131.3 29.6 134 439-604 154-287 (445)
61 4g56_B MGC81050 protein; prote 99.2 1.7E-10 5.7E-15 140.0 17.4 139 440-604 177-321 (357)
62 4aez_A CDC20, WD repeat-contai 99.2 3.8E-09 1.3E-13 129.3 29.4 130 443-602 133-265 (401)
63 2ymu_A WD-40 repeat protein; u 99.2 1.5E-10 5.2E-15 147.3 17.0 134 440-604 422-557 (577)
64 2pbi_B Guanine nucleotide-bind 99.2 3.3E-10 1.1E-14 137.1 18.6 139 439-604 191-334 (354)
65 4h5i_A Guanine nucleotide-exch 99.2 7.8E-11 2.7E-15 143.4 13.2 110 444-566 219-334 (365)
66 1erj_A Transcriptional repress 99.2 4.8E-09 1.6E-13 128.4 29.0 127 442-592 62-204 (393)
67 4e54_B DNA damage-binding prot 99.2 1.4E-10 4.9E-15 143.8 15.6 136 444-606 119-260 (435)
68 3v7d_B Cell division control p 99.2 3.5E-09 1.2E-13 131.3 27.9 137 440-604 158-360 (464)
69 1erj_A Transcriptional repress 99.2 3.8E-09 1.3E-13 129.3 27.8 109 446-573 125-235 (393)
70 3iz6_a 40S ribosomal protein R 99.1 2.4E-10 8.1E-15 139.4 15.9 114 443-573 204-326 (380)
71 3vl1_A 26S proteasome regulato 99.1 2.1E-09 7.2E-14 130.9 24.3 129 449-606 63-191 (420)
72 4ggc_A P55CDC, cell division c 99.1 7.5E-09 2.6E-13 120.4 27.7 129 448-604 29-158 (318)
73 3bg1_A Protein SEC13 homolog; 99.1 2.2E-10 7.5E-15 136.1 14.6 143 441-604 10-160 (316)
74 3mkq_A Coatomer beta'-subunit; 99.1 2.3E-09 7.8E-14 142.5 25.8 118 439-574 50-170 (814)
75 2pm9_A Protein WEB1, protein t 99.1 3.4E-09 1.1E-13 128.6 24.6 119 443-574 66-195 (416)
76 3dw8_B Serine/threonine-protei 99.1 2.8E-09 9.5E-14 130.8 23.7 124 445-574 94-256 (447)
77 2j04_B YDR362CP, TAU91; beta p 99.1 1E-10 3.5E-15 150.0 11.2 138 440-604 262-405 (524)
78 1p22_A F-BOX/WD-repeat protein 99.1 4.1E-09 1.4E-13 130.4 25.2 133 440-604 169-304 (435)
79 2vdu_B TRNA (guanine-N(7)-)-me 99.1 6.9E-09 2.4E-13 129.1 27.3 139 443-604 101-249 (450)
80 2xyi_A Probable histone-bindin 99.1 2.4E-09 8.3E-14 132.7 22.9 125 441-574 125-261 (430)
81 3f3f_A Nucleoporin SEH1; struc 99.1 2.4E-09 8.3E-14 124.7 20.7 130 440-575 53-248 (351)
82 3jro_A Fusion protein of prote 99.1 3E-09 1E-13 142.0 24.0 144 440-605 5-154 (753)
83 1sq9_A Antiviral protein SKI8; 99.1 6.8E-09 2.3E-13 125.2 24.9 121 440-574 58-214 (397)
84 1pgu_A Actin interacting prote 99.1 9E-10 3.1E-14 140.6 17.9 136 443-604 445-592 (615)
85 2j04_A TAU60, YPL007P, hypothe 99.1 4.1E-10 1.4E-14 143.5 14.5 92 444-550 85-193 (588)
86 4a11_B DNA excision repair pro 99.1 2.5E-08 8.5E-13 119.9 29.2 146 441-606 40-196 (408)
87 3ei3_B DNA damage-binding prot 99.1 8.1E-09 2.8E-13 124.7 25.0 139 441-606 70-214 (383)
88 2pm9_A Protein WEB1, protein t 99.1 2.5E-09 8.7E-14 129.6 20.2 113 446-574 14-143 (416)
89 3i2n_A WD repeat-containing pr 99.1 5.7E-09 2E-13 123.3 22.6 122 440-574 14-146 (357)
90 1yfq_A Cell cycle arrest prote 99.1 9E-09 3.1E-13 121.3 23.9 113 443-573 10-128 (342)
91 3dw8_B Serine/threonine-protei 99.1 7.1E-09 2.4E-13 127.2 23.7 122 443-574 27-205 (447)
92 3odt_A Protein DOA1; ubiquitin 99.1 3.1E-08 1.1E-12 114.7 27.6 237 441-778 56-295 (313)
93 3lrv_A PRE-mRNA-splicing facto 99.0 1.4E-09 4.9E-14 130.1 16.3 106 444-565 125-235 (343)
94 2pm7_B Protein transport prote 99.0 3E-09 1E-13 125.0 17.8 118 442-573 97-235 (297)
95 3vu4_A KMHSV2; beta-propeller 99.0 1.4E-09 4.8E-14 131.6 15.1 118 449-572 142-267 (355)
96 3bg1_A Protein SEC13 homolog; 99.0 1E-09 3.5E-14 130.3 13.4 146 439-604 52-220 (316)
97 3lrv_A PRE-mRNA-splicing facto 99.0 7.4E-09 2.5E-13 123.9 20.9 143 445-604 77-222 (343)
98 4e54_B DNA damage-binding prot 99.0 1.5E-09 5.2E-14 134.6 14.9 139 440-604 160-304 (435)
99 4aow_A Guanine nucleotide-bind 99.0 9.1E-08 3.1E-12 112.4 28.6 140 440-604 82-223 (340)
100 3jrp_A Fusion protein of prote 99.0 3.9E-08 1.3E-12 116.9 25.5 149 440-604 51-214 (379)
101 3gre_A Serine/threonine-protei 99.0 1.4E-08 4.8E-13 124.9 22.2 144 442-604 61-222 (437)
102 3zwl_B Eukaryotic translation 99.0 1.3E-07 4.3E-12 111.9 28.9 176 397-604 15-226 (369)
103 3gre_A Serine/threonine-protei 99.0 2.1E-09 7.3E-14 132.2 14.0 136 443-599 167-306 (437)
104 4gq1_A NUP37; propeller, trans 99.0 1.3E-09 4.3E-14 133.9 11.0 110 452-574 99-216 (393)
105 3sfz_A APAF-1, apoptotic pepti 99.0 5.3E-08 1.8E-12 136.1 28.8 115 440-573 653-771 (1249)
106 2oaj_A Protein SNI1; WD40 repe 98.9 5.5E-09 1.9E-13 142.3 16.5 110 443-574 16-127 (902)
107 4h5i_A Guanine nucleotide-exch 98.9 4.6E-08 1.6E-12 119.0 23.0 102 446-566 135-241 (365)
108 2xyi_A Probable histone-bindin 98.9 1E-08 3.5E-13 127.0 17.5 152 439-606 226-388 (430)
109 4gq1_A NUP37; propeller, trans 98.9 9.1E-09 3.1E-13 126.2 15.6 116 440-572 132-282 (393)
110 1yfq_A Cell cycle arrest prote 98.9 1.2E-08 4E-13 120.4 15.9 135 443-603 149-301 (342)
111 2j04_A TAU60, YPL007P, hypothe 98.9 7.7E-09 2.6E-13 132.0 15.2 132 446-601 131-270 (588)
112 2j04_B YDR362CP, TAU91; beta p 98.9 4.4E-09 1.5E-13 134.8 13.2 143 442-604 205-365 (524)
113 3mmy_A MRNA export factor; mRN 98.9 1.8E-08 6.3E-13 119.1 16.6 80 439-531 81-164 (368)
114 2w18_A PALB2, fancn, partner a 98.8 1.7E-08 5.9E-13 121.8 15.3 159 417-604 156-336 (356)
115 3i2n_A WD repeat-containing pr 98.8 9.1E-09 3.1E-13 121.6 12.6 120 442-574 207-351 (357)
116 4a11_B DNA excision repair pro 98.8 3.2E-08 1.1E-12 118.9 17.6 114 444-575 141-275 (408)
117 2vdu_B TRNA (guanine-N(7)-)-me 98.8 1.4E-08 4.7E-13 126.4 14.2 114 444-572 149-267 (450)
118 4gga_A P55CDC, cell division c 98.8 2.6E-08 8.8E-13 122.8 15.9 118 441-586 273-397 (420)
119 2oit_A Nucleoporin 214KDA; NH2 98.8 1.1E-08 3.6E-13 128.1 12.5 121 445-573 93-220 (434)
120 3jro_A Fusion protein of prote 98.8 3.1E-08 1E-12 132.3 17.3 149 439-604 48-212 (753)
121 3vu4_A KMHSV2; beta-propeller 98.7 6.8E-08 2.3E-12 116.8 16.2 81 439-529 190-273 (355)
122 3bws_A Protein LP49; two-domai 98.7 7E-07 2.4E-11 109.2 24.7 118 444-574 122-241 (433)
123 4ggc_A P55CDC, cell division c 98.7 1.3E-07 4.4E-12 110.0 15.1 115 441-583 193-314 (318)
124 1l0q_A Surface layer protein; 98.6 8.8E-06 3E-10 98.1 29.5 112 443-574 30-145 (391)
125 1l0q_A Surface layer protein; 98.5 1.2E-05 4.2E-10 96.7 27.7 100 455-574 3-103 (391)
126 2w18_A PALB2, fancn, partner a 98.5 2.6E-07 8.9E-12 111.6 12.6 95 457-566 253-348 (356)
127 2oit_A Nucleoporin 214KDA; NH2 98.5 4.3E-07 1.5E-11 113.6 13.6 107 443-567 148-263 (434)
128 3bws_A Protein LP49; two-domai 98.5 1.5E-05 5E-10 97.5 27.0 116 440-574 165-290 (433)
129 2hqs_A Protein TOLB; TOLB, PAL 98.3 6.5E-05 2.2E-09 93.0 27.6 100 454-573 143-253 (415)
130 2hqs_A Protein TOLB; TOLB, PAL 98.3 9.3E-06 3.2E-10 100.5 19.1 113 441-573 175-297 (415)
131 2ojh_A Uncharacterized protein 98.2 9.3E-05 3.2E-09 84.0 23.6 85 460-563 18-103 (297)
132 2ecf_A Dipeptidyl peptidase IV 98.2 5.7E-05 2E-09 99.5 24.0 111 444-573 36-178 (741)
133 1ri6_A Putative isomerase YBHE 98.0 0.00064 2.2E-08 79.4 24.0 116 443-574 36-158 (343)
134 1xi4_A Clathrin heavy chain; a 98.0 0.02 6.8E-07 79.2 40.6 111 937-1062 678-792 (1630)
135 2ojh_A Uncharacterized protein 97.9 0.0011 3.7E-08 75.1 22.7 107 442-568 39-152 (297)
136 3vgz_A Uncharacterized protein 97.7 0.0098 3.3E-07 69.9 29.1 112 445-574 41-171 (353)
137 3vgz_A Uncharacterized protein 97.7 0.00049 1.7E-08 81.0 16.7 111 447-574 143-260 (353)
138 1xfd_A DIP, dipeptidyl aminope 97.7 9.4E-05 3.2E-09 97.1 11.6 103 447-565 63-193 (723)
139 1nir_A Nitrite reductase; hemo 97.6 0.00041 1.4E-08 89.2 16.0 111 447-575 181-310 (543)
140 3o4h_A Acylamino-acid-releasin 97.6 9.1E-05 3.1E-09 95.1 9.3 98 449-567 156-267 (582)
141 1xfd_A DIP, dipeptidyl aminope 97.6 5.5E-05 1.9E-09 99.3 7.1 105 448-573 20-140 (723)
142 1k32_A Tricorn protease; prote 97.6 0.00019 6.5E-09 99.2 12.7 104 444-566 378-493 (1045)
143 1z68_A Fibroblast activation p 97.6 4.9E-05 1.7E-09 100.1 6.4 102 447-566 62-191 (719)
144 1nir_A Nitrite reductase; hemo 97.5 0.00024 8.2E-09 91.4 12.3 101 453-573 148-254 (543)
145 3hfq_A Uncharacterized protein 97.5 0.0012 4E-08 78.4 15.9 120 443-573 84-215 (347)
146 3u4y_A Uncharacterized protein 97.4 0.0012 4E-08 77.5 15.4 110 445-573 41-157 (331)
147 1ri6_A Putative isomerase YBHE 97.4 0.0015 5.1E-08 76.3 15.6 115 446-572 179-304 (343)
148 1k32_A Tricorn protease; prote 97.4 0.00077 2.6E-08 93.1 15.1 100 446-564 339-440 (1045)
149 4a5s_A Dipeptidyl peptidase 4 97.4 0.00045 1.6E-08 91.8 12.1 105 452-574 26-139 (740)
150 2ecf_A Dipeptidyl peptidase IV 97.4 0.0031 1.1E-07 83.0 19.8 70 496-573 36-135 (741)
151 3hfq_A Uncharacterized protein 97.4 0.0014 4.7E-08 77.8 14.7 116 446-572 188-313 (347)
152 3scy_A Hypothetical bacterial 97.3 0.002 7E-08 76.9 16.0 113 445-571 211-332 (361)
153 3o4h_A Acylamino-acid-releasin 97.3 0.00068 2.3E-08 87.0 12.0 104 447-573 114-224 (582)
154 2z3z_A Dipeptidyl aminopeptida 97.3 0.00097 3.3E-08 87.4 13.5 90 462-567 233-333 (706)
155 1xip_A Nucleoporin NUP159; bet 97.3 0.00048 1.6E-08 84.9 9.9 86 447-550 129-224 (388)
156 4a5s_A Dipeptidyl peptidase 4 97.3 0.0011 3.7E-08 88.2 13.5 100 449-566 68-193 (740)
157 3u4y_A Uncharacterized protein 97.2 0.0027 9.3E-08 74.3 15.2 115 444-573 127-249 (331)
158 1pby_B Quinohemoprotein amine 97.2 0.0017 5.8E-08 75.6 13.2 93 455-563 2-100 (337)
159 3scy_A Hypothetical bacterial 97.2 0.0039 1.3E-07 74.4 16.0 116 444-572 154-287 (361)
160 1jmx_B Amine dehydrogenase; ox 97.2 0.0011 3.9E-08 77.6 11.0 98 452-565 9-112 (349)
161 1xip_A Nucleoporin NUP159; bet 97.1 0.0022 7.4E-08 79.1 13.3 101 447-573 90-190 (388)
162 2z3z_A Dipeptidyl aminopeptida 97.1 0.0035 1.2E-07 82.1 15.5 116 445-573 258-388 (706)
163 1z68_A Fibroblast activation p 97.1 0.00038 1.3E-08 91.6 6.3 99 452-574 25-137 (719)
164 1pby_B Quinohemoprotein amine 96.8 0.0028 9.6E-08 73.7 10.3 111 446-573 35-160 (337)
165 1jof_A Carboxy-CIS,CIS-muconat 96.8 0.0036 1.2E-07 75.5 11.2 116 445-572 83-220 (365)
166 3azo_A Aminopeptidase; POP fam 96.8 0.0031 1.1E-07 81.9 11.0 109 447-567 132-263 (662)
167 1jof_A Carboxy-CIS,CIS-muconat 96.6 0.0091 3.1E-07 71.9 13.1 119 445-572 193-337 (365)
168 1q7f_A NHL, brain tumor CG1071 96.5 0.035 1.2E-06 63.7 16.0 111 444-573 163-277 (286)
169 1jmx_B Amine dehydrogenase; ox 96.5 0.0077 2.6E-07 70.5 10.5 95 446-550 44-158 (349)
170 1q7f_A NHL, brain tumor CG1071 96.5 0.03 1E-06 64.4 15.2 115 443-573 28-148 (286)
171 2ecl_A Ring-box protein 2; RNF 96.4 0.0013 4.5E-08 63.0 2.9 56 1751-1811 11-75 (81)
172 2oiz_A Aromatic amine dehydrog 96.3 0.012 4.2E-07 71.2 11.6 88 448-551 259-359 (361)
173 1xi4_A Clathrin heavy chain; a 96.3 7.4 0.00025 54.7 40.1 67 1480-1546 1320-1387(1630)
174 3fvz_A Peptidyl-glycine alpha- 96.2 0.067 2.3E-06 63.5 16.9 97 443-550 22-153 (329)
175 1v87_A Deltex protein 2; ring- 96.2 0.0041 1.4E-07 63.1 5.1 59 1753-1812 23-94 (114)
176 1b89_A Protein (clathrin heavy 96.1 0.14 4.8E-06 63.9 19.6 63 1481-1543 248-311 (449)
177 3pe7_A Oligogalacturonate lyas 96.1 0.027 9.4E-07 67.3 12.9 88 450-550 43-135 (388)
178 2dg1_A DRP35, lactonase; beta 96.1 0.085 2.9E-06 61.9 16.7 96 443-550 43-145 (333)
179 3fvz_A Peptidyl-glycine alpha- 96.0 0.032 1.1E-06 66.2 12.9 114 444-573 195-319 (329)
180 1iym_A EL5; ring-H2 finger, ub 96.0 0.0032 1.1E-07 55.2 2.9 47 1755-1809 5-52 (55)
181 2ecm_A Ring finger and CHY zin 95.9 0.0026 8.8E-08 55.8 2.1 48 1755-1809 5-52 (55)
182 1x4j_A Ring finger protein 38; 95.9 0.0029 9.8E-08 59.4 2.4 51 1754-1812 22-72 (75)
183 2ect_A Ring finger protein 126 95.9 0.0041 1.4E-07 58.7 3.3 48 1755-1810 15-62 (78)
184 3no2_A Uncharacterized protein 95.8 0.04 1.4E-06 64.3 12.4 99 455-573 6-105 (276)
185 4ayc_A E3 ubiquitin-protein li 95.8 0.014 4.7E-07 61.5 7.6 44 1756-1810 54-97 (138)
186 3dpl_R Ring-box protein 1; ubi 95.8 0.0036 1.2E-07 63.2 2.6 55 1751-1810 33-99 (106)
187 2gop_A Trilobed protease; beta 95.7 0.052 1.8E-06 63.9 12.6 92 447-563 17-122 (347)
188 1pjx_A Dfpase, DIISOPROPYLFLUO 95.7 0.12 4.1E-06 59.7 15.4 117 444-572 171-295 (314)
189 1chc_A Equine herpes virus-1 r 95.5 0.0036 1.2E-07 57.4 1.4 47 1754-1810 4-50 (68)
190 2ep4_A Ring finger protein 24; 95.5 0.0039 1.3E-07 58.2 1.4 48 1755-1810 15-62 (74)
191 2ysl_A Tripartite motif-contai 95.4 0.0059 2E-07 56.7 2.4 49 1754-1810 19-67 (73)
192 2xdw_A Prolyl endopeptidase; a 95.4 0.052 1.8E-06 71.6 12.2 100 447-564 127-252 (710)
193 2l0b_A E3 ubiquitin-protein li 95.4 0.005 1.7E-07 60.2 1.9 48 1754-1809 39-86 (91)
194 2kiz_A E3 ubiquitin-protein li 95.3 0.0048 1.6E-07 56.8 1.5 50 1754-1811 13-62 (69)
195 3e5z_A Putative gluconolactona 95.3 0.12 4.3E-06 59.6 13.9 105 443-565 170-277 (296)
196 3azo_A Aminopeptidase; POP fam 95.3 0.056 1.9E-06 70.1 12.1 92 450-550 195-304 (662)
197 2ysj_A Tripartite motif-contai 95.3 0.0045 1.5E-07 56.0 1.2 44 1755-1806 20-63 (63)
198 3no2_A Uncharacterized protein 95.3 0.48 1.6E-05 55.2 18.6 45 505-550 2-47 (276)
199 2bkl_A Prolyl endopeptidase; m 95.2 0.043 1.5E-06 72.2 10.7 101 447-564 123-246 (695)
200 4a0k_B E3 ubiquitin-protein li 95.1 0.0041 1.4E-07 63.8 0.4 54 1751-1809 44-109 (117)
201 2gop_A Trilobed protease; beta 95.0 0.11 3.8E-06 61.0 12.5 89 445-550 59-181 (347)
202 2ecj_A Tripartite motif-contai 94.9 0.0075 2.6E-07 53.3 1.5 45 1754-1806 14-58 (58)
203 2oiz_A Aromatic amine dehydrog 94.9 0.1 3.4E-06 63.2 11.8 93 449-550 54-161 (361)
204 2d8t_A Dactylidin, ring finger 94.9 0.0093 3.2E-07 55.3 2.1 46 1754-1810 14-59 (71)
205 3g4e_A Regucalcin; six bladed 94.8 0.15 5E-06 59.6 12.5 111 444-566 148-263 (297)
206 2ct2_A Tripartite motif protei 94.6 0.01 3.6E-07 57.0 1.8 53 1754-1810 14-66 (88)
207 1qks_A Cytochrome CD1 nitrite 94.5 0.25 8.6E-06 63.8 14.9 99 456-574 169-273 (567)
208 2yur_A Retinoblastoma-binding 94.5 0.017 5.7E-07 54.2 2.9 47 1754-1809 14-61 (74)
209 1t1h_A Gspef-atpub14, armadill 94.5 0.011 3.8E-07 55.7 1.6 48 1753-1810 6-53 (78)
210 2xeu_A Ring finger protein 4; 94.5 0.0065 2.2E-07 54.7 -0.1 51 1755-1810 3-54 (64)
211 1qks_A Cytochrome CD1 nitrite 94.4 0.35 1.2E-05 62.4 15.9 114 446-575 198-328 (567)
212 3pe7_A Oligogalacturonate lyas 94.4 0.07 2.4E-06 63.7 8.8 65 502-573 41-108 (388)
213 2ea6_A Ring finger protein 4; 94.4 0.0087 3E-07 54.7 0.5 51 1754-1809 14-65 (69)
214 1rwi_B Serine/threonine-protei 94.3 0.44 1.5E-05 53.7 14.8 111 444-573 149-261 (270)
215 3ng2_A RNF4, snurf, ring finge 94.2 0.0097 3.3E-07 54.9 0.5 52 1754-1810 9-61 (71)
216 3l11_A E3 ubiquitin-protein li 94.2 0.019 6.5E-07 58.4 2.6 46 1755-1810 15-60 (115)
217 2egp_A Tripartite motif-contai 94.1 0.017 5.9E-07 54.4 2.0 50 1754-1810 11-63 (79)
218 2xdw_A Prolyl endopeptidase; a 94.1 0.31 1.1E-05 64.2 14.7 101 450-565 178-306 (710)
219 2dg1_A DRP35, lactonase; beta 94.0 0.65 2.2E-05 54.3 15.7 113 444-573 86-210 (333)
220 1jm7_A BRCA1, breast cancer ty 93.9 0.013 4.5E-07 59.0 0.9 46 1756-1809 22-67 (112)
221 1g25_A CDK-activating kinase a 93.9 0.018 6.2E-07 52.4 1.6 50 1755-1810 3-53 (65)
222 1bor_A Transcription factor PM 93.8 0.032 1.1E-06 49.5 3.0 43 1755-1811 6-48 (56)
223 2djb_A Polycomb group ring fin 93.6 0.016 5.3E-07 53.9 0.7 46 1755-1810 15-60 (72)
224 2csy_A Zinc finger protein 183 93.6 0.017 5.9E-07 54.9 0.9 45 1755-1810 15-59 (81)
225 2ecy_A TNF receptor-associated 93.6 0.015 5.2E-07 53.0 0.5 47 1754-1810 14-60 (66)
226 2ckl_A Polycomb group ring fin 93.5 0.019 6.6E-07 57.7 1.2 46 1755-1810 15-60 (108)
227 2ecn_A Ring finger protein 141 93.5 0.017 5.9E-07 53.2 0.7 44 1755-1810 15-58 (70)
228 3fl2_A E3 ubiquitin-protein li 93.4 0.018 6.2E-07 59.4 0.8 45 1756-1810 53-97 (124)
229 2y43_A E3 ubiquitin-protein li 93.4 0.016 5.5E-07 57.3 0.4 46 1755-1810 22-67 (99)
230 3e5z_A Putative gluconolactona 93.4 0.63 2.2E-05 53.6 14.0 117 440-573 64-199 (296)
231 3c5m_A Oligogalacturonate lyas 93.3 0.18 6.2E-06 60.0 9.6 99 447-567 240-373 (396)
232 3c5m_A Oligogalacturonate lyas 93.3 0.065 2.2E-06 63.9 5.5 74 450-535 43-119 (396)
233 2bkl_A Prolyl endopeptidase; m 93.2 0.46 1.6E-05 62.4 14.0 107 450-573 175-301 (695)
234 2ckl_B Ubiquitin ligase protei 93.2 0.021 7.2E-07 61.9 1.0 46 1756-1810 55-100 (165)
235 1rwi_B Serine/threonine-protei 93.2 0.73 2.5E-05 51.9 13.8 110 444-572 107-218 (270)
236 2ecw_A Tripartite motif-contai 93.1 0.032 1.1E-06 53.0 2.0 50 1755-1810 19-69 (85)
237 3lrq_A E3 ubiquitin-protein li 93.1 0.017 5.7E-07 57.5 -0.0 47 1755-1810 22-68 (100)
238 2ecv_A Tripartite motif-contai 93.1 0.024 8.1E-07 53.9 1.0 50 1754-1810 18-69 (85)
239 2z2n_A Virginiamycin B lyase; 93.0 1.6 5.6E-05 49.4 16.6 110 443-572 13-125 (299)
240 3dsm_A Uncharacterized protein 92.8 0.5 1.7E-05 56.1 12.2 92 446-550 132-235 (328)
241 2z2n_A Virginiamycin B lyase; 92.8 1.8 6.3E-05 48.9 16.6 94 444-550 56-151 (299)
242 3ztg_A E3 ubiquitin-protein li 92.6 0.035 1.2E-06 54.0 1.5 48 1753-1809 11-59 (92)
243 1z6u_A NP95-like ring finger p 92.5 0.029 1E-06 60.0 0.9 45 1756-1810 79-123 (150)
244 2qe8_A Uncharacterized protein 92.3 1.3 4.5E-05 52.7 15.0 87 443-535 65-162 (343)
245 1b89_A Protein (clathrin heavy 92.2 3.1 0.0001 52.0 18.3 66 993-1062 94-159 (449)
246 1jm7_B BARD1, BRCA1-associated 91.7 0.065 2.2E-06 54.7 2.3 42 1755-1809 22-64 (117)
247 4ap4_A E3 ubiquitin ligase RNF 91.3 0.048 1.6E-06 56.2 0.8 53 1753-1810 5-58 (133)
248 2qc5_A Streptogramin B lactona 91.1 3.7 0.00013 46.4 16.5 110 444-572 19-130 (300)
249 3dsm_A Uncharacterized protein 90.9 1.8 6.2E-05 51.2 14.2 89 446-547 45-138 (328)
250 2ghs_A AGR_C_1268P; regucalcin 90.9 1.8 6.2E-05 51.1 14.1 111 445-567 179-294 (326)
251 1yr2_A Prolyl oligopeptidase; 90.9 1.3 4.5E-05 58.6 14.2 96 455-565 220-336 (741)
252 3hrp_A Uncharacterized protein 90.7 1.3 4.3E-05 54.7 12.9 112 443-574 129-247 (409)
253 2qc5_A Streptogramin B lactona 90.6 4.8 0.00016 45.5 16.8 94 444-550 61-156 (300)
254 1yr2_A Prolyl oligopeptidase; 89.9 0.45 1.6E-05 63.0 8.5 99 447-564 165-287 (741)
255 2ct0_A Non-SMC element 1 homol 89.8 0.15 5.2E-06 48.0 2.7 52 1751-1810 11-62 (74)
256 2hz6_A Endoplasmic reticulum t 89.7 0.24 8.1E-06 60.1 5.1 71 451-535 6-76 (369)
257 1pjx_A Dfpase, DIISOPROPYLFLUO 89.6 3.2 0.00011 47.6 14.4 92 444-548 70-180 (314)
258 1e4u_A Transcriptional repress 89.4 0.075 2.6E-06 50.6 0.3 49 1755-1811 11-61 (78)
259 1rmd_A RAG1; V(D)J recombinati 88.8 0.093 3.2E-06 53.3 0.5 46 1755-1810 23-68 (116)
260 2ghs_A AGR_C_1268P; regucalcin 88.7 4.2 0.00014 48.0 14.8 111 445-573 90-207 (326)
261 2y1n_A E3 ubiquitin-protein li 88.6 0.14 4.8E-06 62.6 1.9 46 1755-1810 332-377 (389)
262 3sjl_D Methylamine dehydrogena 88.5 1.5 5.2E-05 53.8 11.0 105 452-575 42-168 (386)
263 2f42_A STIP1 homology and U-bo 88.4 0.35 1.2E-05 53.1 4.7 54 1747-1810 98-151 (179)
264 2c2l_A CHIP, carboxy terminus 88.4 0.14 4.9E-06 59.4 1.8 52 1749-1810 202-253 (281)
265 4ic3_A E3 ubiquitin-protein li 88.0 0.26 9E-06 46.1 3.0 40 1756-1810 25-65 (74)
266 3iuj_A Prolyl endopeptidase; h 87.8 0.42 1.4E-05 62.9 5.9 63 495-565 127-194 (693)
267 3sjl_D Methylamine dehydrogena 87.7 1.2 4.1E-05 54.8 9.3 79 450-535 83-177 (386)
268 3hct_A TNF receptor-associated 87.6 0.11 3.7E-06 53.1 0.1 46 1755-1810 18-63 (118)
269 3lvg_A Clathrin heavy chain 1; 87.1 0.21 7.1E-06 62.2 2.1 177 1299-1536 291-476 (624)
270 4ap4_A E3 ubiquitin ligase RNF 86.8 0.12 4.2E-06 53.1 -0.0 52 1754-1810 71-123 (133)
271 3c75_H MADH, methylamine dehyd 86.8 1.7 5.9E-05 54.0 10.2 104 453-575 83-208 (426)
272 2mad_H Methylamine dehydrogena 86.3 4.4 0.00015 49.3 13.3 68 501-573 70-154 (373)
273 3iuj_A Prolyl endopeptidase; h 86.3 5.8 0.0002 52.1 15.5 88 453-550 184-290 (693)
274 3g4e_A Regucalcin; six bladed 85.6 6.2 0.00021 45.6 13.7 113 444-572 53-176 (297)
275 2ecg_A Baculoviral IAP repeat- 85.2 0.18 6.2E-06 47.3 0.2 40 1756-1810 26-66 (75)
276 3q7m_A Lipoprotein YFGL, BAMB; 84.8 5.2 0.00018 47.6 12.9 79 444-535 267-345 (376)
277 3dr2_A Exported gluconolactona 84.6 6.8 0.00023 45.4 13.4 100 439-550 80-198 (305)
278 3dr2_A Exported gluconolactona 84.0 6 0.0002 45.9 12.6 103 444-565 187-297 (305)
279 3o36_A Transcription intermedi 83.4 2.3 8E-05 46.7 8.2 51 1753-1810 2-52 (184)
280 2d8s_A Cellular modulator of i 83.2 0.47 1.6E-05 45.3 2.1 51 1755-1812 15-70 (80)
281 3knv_A TNF receptor-associated 83.1 0.18 6.3E-06 53.3 -0.8 45 1755-1809 31-75 (141)
282 1mda_H Methylamine dehydrogena 83.0 2.6 8.7E-05 51.5 9.1 76 447-535 268-354 (368)
283 3nw0_A Non-structural maintena 82.9 0.2 6.8E-06 57.6 -0.7 47 1755-1809 180-226 (238)
284 2kre_A Ubiquitin conjugation f 82.8 0.4 1.4E-05 47.7 1.6 48 1751-1809 25-72 (100)
285 2mad_H Methylamine dehydrogena 82.7 4.6 0.00016 49.0 11.3 71 451-534 275-357 (373)
286 2kr4_A Ubiquitin conjugation f 81.0 0.41 1.4E-05 46.1 0.9 47 1752-1809 11-57 (85)
287 1wgm_A Ubiquitin conjugation f 80.4 0.58 2E-05 46.4 1.7 48 1752-1810 19-67 (98)
288 3c75_H MADH, methylamine dehyd 80.1 4 0.00014 50.8 9.5 79 447-538 323-414 (426)
289 2iwa_A Glutamine cyclotransfer 79.4 14 0.00049 42.9 13.3 116 446-574 108-235 (266)
290 1kb0_A Quinohemoprotein alcoho 79.3 2.8 9.7E-05 55.2 8.3 74 464-550 457-530 (677)
291 1yiq_A Quinohemoprotein alcoho 79.3 3.5 0.00012 54.4 9.1 88 463-567 454-541 (689)
292 2qe8_A Uncharacterized protein 78.8 25 0.00087 41.4 15.7 57 494-550 64-130 (343)
293 1we9_A PHD finger family prote 78.3 1.1 3.8E-05 40.7 2.8 59 1754-1814 5-63 (64)
294 2ea5_A Cell growth regulator w 78.3 0.83 2.8E-05 42.1 1.9 42 1754-1810 14-56 (68)
295 3htk_C E3 SUMO-protein ligase 78.0 0.65 2.2E-05 53.7 1.4 48 1753-1808 179-228 (267)
296 2yho_A E3 ubiquitin-protein li 76.6 1.3 4.5E-05 42.0 2.8 40 1756-1810 19-59 (79)
297 3t6p_A Baculoviral IAP repeat- 76.5 1.4 4.8E-05 53.3 3.8 41 1755-1810 295-336 (345)
298 3hrp_A Uncharacterized protein 76.5 16 0.00054 44.8 13.4 110 450-572 176-294 (409)
299 2yql_A PHD finger protein 21A; 76.5 1.3 4.5E-05 39.2 2.6 53 1749-1808 3-55 (56)
300 2ece_A 462AA long hypothetical 75.6 13 0.00046 46.4 12.2 99 462-574 162-287 (462)
301 2yu4_A E3 SUMO-protein ligase 73.4 0.99 3.4E-05 44.2 1.1 49 1753-1808 5-58 (94)
302 3ei3_A DNA damage-binding prot 73.4 3E+02 0.01 38.4 28.0 112 446-573 515-633 (1158)
303 3lvg_A Clathrin heavy chain 1; 72.4 1.2 4.2E-05 55.5 1.9 61 1483-1543 272-333 (624)
304 1wen_A Inhibitor of growth fam 70.9 3.8 0.00013 38.2 4.4 51 1756-1814 17-70 (71)
305 1xwh_A Autoimmune regulator; P 70.5 1.9 6.5E-05 39.6 2.2 50 1755-1811 8-57 (66)
306 3k1l_B Fancl; UBC, ring, RWD, 69.6 1.1 3.6E-05 53.6 0.4 55 1754-1808 307-369 (381)
307 3hcs_A TNF receptor-associated 69.4 0.93 3.2E-05 49.0 -0.1 46 1755-1810 18-63 (170)
308 1mm2_A MI2-beta; PHD, zinc fin 69.3 3.3 0.00011 37.4 3.4 50 1754-1810 8-57 (61)
309 1weu_A Inhibitor of growth fam 68.0 3.5 0.00012 40.3 3.6 53 1755-1814 35-90 (91)
310 3hxj_A Pyrrolo-quinoline quino 67.8 12 0.00042 42.9 9.1 100 448-571 140-240 (330)
311 3ei3_A DNA damage-binding prot 67.5 29 0.001 48.5 14.1 112 443-574 884-997 (1158)
312 3q7m_A Lipoprotein YFGL, BAMB; 67.4 30 0.001 40.9 12.6 72 452-534 51-129 (376)
313 1mda_H Methylamine dehydrogena 67.4 8.5 0.00029 46.9 7.8 66 502-574 269-344 (368)
314 2lri_C Autoimmune regulator; Z 67.2 3.2 0.00011 38.2 3.0 48 1755-1809 12-59 (66)
315 2p4o_A Hypothetical protein; p 67.0 99 0.0034 35.6 16.7 74 445-532 32-109 (306)
316 3pbp_A Nucleoporin NUP82; beta 65.7 1.3E+02 0.0044 37.5 17.5 85 443-528 64-159 (452)
317 3v43_A Histone acetyltransfera 65.7 7.9 0.00027 39.1 5.9 59 1748-1809 53-112 (112)
318 3nok_A Glutaminyl cyclase; bet 63.5 67 0.0023 37.4 13.8 104 447-563 138-253 (268)
319 1f62_A Transcription factor WS 63.4 4.1 0.00014 35.2 2.8 48 1757-1808 2-49 (51)
320 3u5n_A E3 ubiquitin-protein li 63.2 4.2 0.00014 45.5 3.7 50 1754-1810 6-55 (207)
321 3vk6_A E3 ubiquitin-protein li 62.2 2.3 7.9E-05 42.1 1.1 45 1757-1810 3-47 (101)
322 2yt5_A Metal-response element- 61.6 2.8 9.6E-05 38.2 1.5 56 1754-1811 5-63 (66)
323 2puy_A PHD finger protein 21A; 61.2 3.9 0.00013 36.7 2.3 49 1754-1809 4-52 (60)
324 3hxj_A Pyrrolo-quinoline quino 60.7 25 0.00085 40.3 9.8 80 454-549 107-186 (330)
325 2vje_B MDM4 protein; proto-onc 60.2 1.4 4.9E-05 39.8 -0.7 47 1755-1810 7-54 (63)
326 2xe4_A Oligopeptidase B; hydro 59.9 15 0.00052 48.8 8.7 99 449-565 180-291 (751)
327 2l5u_A Chromodomain-helicase-D 59.3 4.4 0.00015 36.6 2.3 49 1754-1809 10-58 (61)
328 3nol_A Glutamine cyclotransfer 58.7 87 0.003 36.3 13.6 103 448-563 130-243 (262)
329 2iwa_A Glutamine cyclotransfer 58.1 1.1E+02 0.0039 35.3 14.6 107 447-574 23-133 (266)
330 2fp8_A Strictosidine synthase; 57.8 95 0.0032 35.9 14.2 97 444-550 79-195 (322)
331 1yiq_A Quinohemoprotein alcoho 56.6 60 0.002 42.7 13.5 38 497-534 305-345 (689)
332 1wew_A DNA-binding family prot 56.1 3.6 0.00012 39.0 1.2 54 1755-1814 16-77 (78)
333 2k16_A Transcription initiatio 53.8 4.3 0.00015 38.0 1.4 52 1755-1810 18-69 (75)
334 3mbr_X Glutamine cyclotransfer 53.6 1.5E+02 0.005 34.0 14.3 82 446-535 106-187 (243)
335 1zbd_B Rabphilin-3A; G protein 53.5 24 0.00081 37.0 7.0 60 1750-1811 50-109 (134)
336 2xe4_A Oligopeptidase B; hydro 53.4 10 0.00034 50.5 5.4 69 498-574 175-254 (751)
337 1kb0_A Quinohemoprotein alcoho 53.3 77 0.0026 41.5 13.7 37 499-535 315-354 (677)
338 4a2l_A BT_4663, two-component 53.3 1.4E+02 0.0049 39.4 16.5 114 445-572 357-477 (795)
339 2vje_A E3 ubiquitin-protein li 53.2 3.4 0.00012 37.4 0.6 45 1755-1810 8-55 (64)
340 1wev_A Riken cDNA 1110020M19; 53.0 3.9 0.00013 39.7 1.0 56 1755-1814 16-77 (88)
341 4gq2_M Nucleoporin NUP120; bet 51.5 46 0.0016 45.6 11.4 86 448-534 175-273 (950)
342 1npe_A Nidogen, entactin; glyc 51.4 2.9E+02 0.0099 30.6 16.7 94 444-550 78-177 (267)
343 2ysm_A Myeloid/lymphoid or mix 50.2 7.3 0.00025 39.2 2.5 60 1749-1812 47-107 (111)
344 2e6s_A E3 ubiquitin-protein li 48.9 16 0.00053 34.6 4.3 54 1751-1808 22-76 (77)
345 2lv9_A Histone-lysine N-methyl 48.8 12 0.00042 36.9 3.8 50 1756-1811 29-78 (98)
346 2ad6_A Methanol dehydrogenase 48.4 32 0.0011 44.2 8.7 63 462-537 442-504 (571)
347 3ask_A E3 ubiquitin-protein li 48.1 11 0.00036 42.9 3.6 54 1751-1808 170-224 (226)
348 1wim_A KIAA0161 protein; ring 47.5 4.9 0.00017 39.0 0.7 51 1755-1809 5-61 (94)
349 2xb1_A Pygopus homolog 2, B-ce 47.2 4.5 0.00015 40.6 0.4 54 1756-1812 4-64 (105)
350 1npe_A Nidogen, entactin; glyc 47.1 94 0.0032 34.8 11.5 94 443-550 165-261 (267)
351 4fhn_B Nucleoporin NUP120; pro 47.1 25 0.00086 49.1 8.0 86 449-535 178-276 (1139)
352 1fp0_A KAP-1 corepressor; PHD 47.1 15 0.00051 35.7 3.9 49 1755-1810 25-73 (88)
353 3nok_A Glutaminyl cyclase; bet 44.9 3.7E+02 0.013 31.1 16.0 104 448-574 58-162 (268)
354 2e6r_A Jumonji/ARID domain-con 44.2 8.8 0.0003 37.5 1.9 52 1754-1809 15-66 (92)
355 3f6q_B LIM and senescent cell 43.5 16 0.00056 32.9 3.5 41 1753-1810 9-49 (72)
356 3asl_A E3 ubiquitin-protein li 42.9 15 0.00051 34.1 3.2 55 1751-1809 14-69 (70)
357 1x61_A Thyroid receptor intera 42.8 20 0.0007 32.5 4.1 40 1754-1810 4-43 (72)
358 2ro1_A Transcription intermedi 42.7 11 0.00039 41.5 2.8 49 1755-1810 2-50 (189)
359 3f7f_A Nucleoporin NUP120; nuc 41.7 50 0.0017 43.5 8.9 85 448-535 165-258 (729)
360 4a2l_A BT_4663, two-component 41.7 2.4E+02 0.0081 37.2 15.8 112 444-572 405-523 (795)
361 3shb_A E3 ubiquitin-protein li 41.6 19 0.00064 34.1 3.6 30 1778-1808 46-76 (77)
362 2hz6_A Endoplasmic reticulum t 40.9 20 0.0007 43.0 4.9 59 507-574 8-66 (369)
363 2g6q_A Inhibitor of growth pro 40.3 11 0.00038 34.1 1.8 51 1753-1810 8-61 (62)
364 1k3i_A Galactose oxidase precu 39.9 85 0.0029 40.7 10.9 100 449-563 192-305 (656)
365 3lqh_A Histone-lysine N-methyl 39.6 19 0.00066 39.6 3.9 57 1755-1811 2-65 (183)
366 3v9f_A Two-component system se 39.4 2E+02 0.0068 37.9 14.5 112 444-572 362-475 (781)
367 1x4l_A Skeletal muscle LIM-pro 39.1 24 0.0008 32.2 3.9 41 1755-1810 5-45 (72)
368 2dar_A PDZ and LIM domain prot 39.0 26 0.0009 33.5 4.4 37 1755-1810 25-61 (90)
369 2xbg_A YCF48-like protein; pho 38.8 2.2E+02 0.0076 33.2 13.4 55 495-550 203-260 (327)
370 3qqz_A Putative uncharacterize 38.6 1.4E+02 0.0048 34.3 11.2 74 492-572 22-96 (255)
371 3c6w_A P28ING5, inhibitor of g 38.5 12 0.00041 33.5 1.7 49 1754-1809 7-58 (59)
372 1wyh_A SLIM 2, skeletal muscle 38.2 22 0.00076 32.2 3.6 39 1755-1810 5-43 (72)
373 2p4o_A Hypothetical protein; p 37.8 2.2E+02 0.0075 32.6 13.0 94 444-549 168-264 (306)
374 1x62_A C-terminal LIM domain p 37.6 20 0.00068 33.4 3.2 38 1753-1809 13-50 (79)
375 1wep_A PHF8; structural genomi 37.3 19 0.00063 34.1 2.9 52 1756-1810 13-64 (79)
376 2vnf_A ING 4, P29ING4, inhibit 37.1 12 0.00043 33.5 1.6 48 1753-1809 7-59 (60)
377 1x64_A Alpha-actinin-2 associa 36.2 31 0.0011 32.8 4.4 39 1753-1810 23-61 (89)
378 2xbg_A YCF48-like protein; pho 36.0 2.4E+02 0.0083 32.9 13.1 55 495-550 161-215 (327)
379 2l4z_A DNA endonuclease RBBP8, 35.9 17 0.00058 37.3 2.6 38 1755-1810 61-98 (123)
380 2p9w_A MAL S 1 allergenic prot 35.4 3.4E+02 0.012 32.5 14.0 80 444-530 136-218 (334)
381 1x4k_A Skeletal muscle LIM-pro 34.9 28 0.00095 31.6 3.6 38 1755-1809 5-42 (72)
382 2xzh_A Clathrin heavy chain 1; 34.2 72 0.0025 38.5 7.8 49 720-770 79-127 (365)
383 3nol_A Glutamine cyclotransfer 34.0 1.2E+02 0.004 35.2 9.5 38 497-535 43-82 (262)
384 2kwj_A Zinc finger protein DPF 34.0 16 0.00054 37.1 1.9 57 1749-1809 51-108 (114)
385 3tc9_A Hypothetical hydrolase; 34.0 3.8E+02 0.013 32.7 14.9 112 443-571 177-296 (430)
386 1x68_A FHL5 protein; four-and- 33.8 27 0.00094 32.2 3.4 30 1755-1788 5-36 (76)
387 1nyp_A Pinch protein; LIM doma 33.7 28 0.00097 31.0 3.4 37 1755-1810 5-41 (66)
388 2cu8_A Cysteine-rich protein 2 33.6 28 0.00097 32.0 3.5 41 1752-1810 6-46 (76)
389 2cur_A Skeletal muscle LIM-pro 33.5 31 0.0011 31.0 3.7 37 1755-1810 5-41 (69)
390 1kv9_A Type II quinohemoprotei 33.1 89 0.003 40.8 9.4 39 497-535 300-341 (668)
391 3v9f_A Two-component system se 32.7 3.4E+02 0.012 35.7 15.1 110 444-571 406-520 (781)
392 2ku3_A Bromodomain-containing 32.5 9.9 0.00034 35.4 0.2 54 1752-1809 13-66 (71)
393 1g47_A Pinch protein; LIM doma 32.1 19 0.00066 33.1 2.1 40 1753-1809 9-48 (77)
394 2d8z_A Four and A half LIM dom 32.1 43 0.0015 30.1 4.4 36 1755-1809 5-40 (70)
395 2d8x_A Protein pinch; LIM doma 31.3 31 0.0011 31.1 3.3 36 1755-1809 5-40 (70)
396 1zfo_A LAsp-1; LIM domain, zin 31.2 14 0.00048 28.7 0.8 29 1755-1788 3-31 (31)
397 3qil_A Clathrin heavy chain 1; 30.9 14 0.00049 37.8 1.0 71 991-1062 46-116 (125)
398 3tc9_A Hypothetical hydrolase; 30.0 2.8E+02 0.0097 33.9 12.8 74 443-529 135-215 (430)
399 1kv9_A Type II quinohemoprotei 30.0 69 0.0024 41.9 7.6 61 462-535 436-496 (668)
400 4gne_A Histone-lysine N-methyl 29.9 44 0.0015 33.6 4.3 49 1749-1807 9-60 (107)
401 2d8y_A Eplin protein; LIM doma 29.8 48 0.0017 31.6 4.6 30 1754-1788 14-43 (91)
402 2fp8_A Strictosidine synthase; 29.7 3.6E+02 0.012 30.8 13.1 92 444-547 184-291 (322)
403 1a7i_A QCRP2 (LIM1); LIM domai 29.3 25 0.00087 32.8 2.4 31 1753-1788 5-35 (81)
404 3o70_A PHD finger protein 13; 28.8 25 0.00086 32.4 2.2 49 1755-1809 19-67 (68)
405 1x63_A Skeletal muscle LIM-pro 28.1 47 0.0016 30.9 4.1 39 1755-1810 15-53 (82)
406 1wee_A PHD finger family prote 28.1 18 0.0006 33.6 1.0 53 1755-1811 16-68 (72)
407 3lys_A Prophage PI2 protein 01 27.8 2E+02 0.0067 27.8 8.8 58 975-1039 35-92 (112)
408 2ysm_A Myeloid/lymphoid or mix 27.7 43 0.0015 33.5 3.9 50 1754-1807 6-55 (111)
409 1wig_A KIAA1808 protein; LIM d 27.6 27 0.00093 32.1 2.2 28 1755-1788 5-32 (73)
410 3mbr_X Glutamine cyclotransfer 27.4 7.3E+02 0.025 28.2 15.4 106 447-574 23-131 (243)
411 2egq_A FHL1 protein; LIM domai 27.1 38 0.0013 31.1 3.2 42 1755-1810 15-56 (77)
412 2jmi_A Protein YNG1, ING1 homo 26.6 12 0.00041 36.5 -0.4 47 1755-1808 25-75 (90)
413 2l3k_A Rhombotin-2, linker, LI 26.6 34 0.0012 34.8 2.9 29 1756-1788 9-37 (123)
414 2cuq_A Four and A half LIM dom 26.4 52 0.0018 30.4 4.0 37 1755-1810 15-51 (80)
415 2dlo_A Thyroid receptor-intera 26.1 46 0.0016 31.0 3.6 38 1754-1810 14-51 (81)
416 3kqi_A GRC5, PHD finger protei 26.0 13 0.00043 34.9 -0.3 56 1755-1812 9-64 (75)
417 3qqz_A Putative uncharacterize 26.0 7.7E+02 0.026 28.0 15.3 122 444-573 69-201 (255)
418 2zet_C Melanophilin; complex, 25.8 1.7E+02 0.0057 31.3 8.1 54 1753-1811 66-119 (153)
419 2l43_A N-teminal domain from h 25.7 17 0.00059 35.2 0.5 50 1755-1810 25-76 (88)
420 2ece_A 462AA long hypothetical 25.6 1.3E+02 0.0043 37.8 8.3 39 497-535 321-363 (462)
421 2ad6_A Methanol dehydrogenase 25.6 2.5E+02 0.0086 35.8 11.6 18 456-473 318-335 (571)
422 1bpo_A Protein (clathrin); cla 25.2 91 0.0031 38.9 6.8 56 720-778 78-133 (494)
423 2cup_A Skeletal muscle LIM-pro 24.7 51 0.0017 31.9 3.8 30 1755-1788 5-34 (101)
424 1fwx_A Nitrous oxide reductase 24.6 38 0.0013 43.8 3.5 77 446-527 278-361 (595)
425 3a9g_A Putative uncharacterize 24.3 5.9E+02 0.02 30.1 13.9 76 443-528 27-115 (354)
426 2co8_A NEDD9 interacting prote 24.1 36 0.0012 32.0 2.4 29 1755-1788 15-43 (82)
427 2ri7_A Nucleosome-remodeling f 23.8 15 0.00052 39.7 -0.3 53 1755-1810 8-60 (174)
428 1iml_A CRIP, cysteine rich int 23.7 47 0.0016 30.5 3.1 27 1757-1788 2-28 (76)
429 1v6g_A Actin binding LIM prote 23.5 39 0.0013 31.5 2.5 36 1755-1809 15-50 (81)
430 1fwx_A Nitrous oxide reductase 23.5 1.3E+02 0.0045 38.8 8.1 67 499-573 279-358 (595)
431 2rgt_A Fusion of LIM/homeobox 22.9 32 0.0011 36.9 2.1 32 1752-1788 3-34 (169)
432 2kgg_A Histone demethylase jar 22.4 26 0.0009 30.4 1.0 48 1757-1807 4-52 (52)
433 2dj7_A Actin-binding LIM prote 21.9 45 0.0016 31.2 2.6 37 1755-1809 15-51 (80)
434 1j2o_A FLIN2, fusion of rhombo 21.5 66 0.0023 32.1 3.9 29 1755-1788 3-31 (114)
435 3pbp_A Nucleoporin NUP82; beta 21.1 1.2E+02 0.0042 37.6 6.8 64 454-521 139-206 (452)
436 2ehe_A Four and A half LIM dom 21.1 53 0.0018 30.6 2.9 30 1755-1788 15-44 (82)
437 1wem_A Death associated transc 20.8 13 0.00044 34.9 -1.5 52 1755-1810 16-71 (76)
438 2ism_A Putative oxidoreductase 20.6 7.9E+02 0.027 28.8 13.9 76 443-528 29-115 (352)
439 1x6a_A LIMK-2, LIM domain kina 20.5 43 0.0015 31.2 2.1 37 1755-1810 15-51 (81)
440 2iyb_E Testin, TESS, TES; LIM 20.1 54 0.0019 29.2 2.6 29 1756-1788 3-33 (65)
No 1
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.50 E-value=4.8e-12 Score=150.62 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=107.0
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.++.+.|.++++++++ ++||+|+.||+|++||+... +......+ ....+|.++|++++|++||++|++|+
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~----~~~~~~~~---~~~~~h~~~v~~~~~s~dg~~l~s~s 84 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD----DQKFGVPV---RSFKGHSHIVQDCTLTADGAYALSAS 84 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEE----TTEEEEEE---EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCC----Cccccccc---eEEeCCcccEEEEEECCCCCEEEEEe
Confidence 4566788899999974 68999999999999997321 00001111 12346899999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
.||+|++||+.++++++++. +|..+|.+++|.++ +. .++++..+|. +++|+. ...+...+.| |
T Consensus 85 ~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~-----~~-~l~s~s~D~~--------i~vwd~-~~~~~~~~~~-h 147 (319)
T 3frx_A 85 WDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKK-----AS-MIISGSRDKT--------IKVWTI-KGQCLATLLG-H 147 (319)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTT-----SC-EEEEEETTSC--------EEEEET-TSCEEEEECC-C
T ss_pred CCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCC-----CC-EEEEEeCCCe--------EEEEEC-CCCeEEEEec-c
Confidence 99999999999999999886 99999999999986 33 4455555554 445543 2344556667 8
Q ss_pred cccEEEeeccc
Q 000170 596 TGIVLSASPLL 606 (1950)
Q Consensus 596 ~g~Vla~spLp 606 (1950)
.+.|.++...|
T Consensus 148 ~~~v~~~~~~~ 158 (319)
T 3frx_A 148 NDWVSQVRVVP 158 (319)
T ss_dssp SSCEEEEEECC
T ss_pred CCcEEEEEEcc
Confidence 88886555544
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.50 E-value=4.9e-12 Score=149.30 Aligned_cols=138 Identities=13% Similarity=0.163 Sum_probs=106.1
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|+...+.++++++++ .+||+|+.||.|++||...+ ..+. ....|..+|++++|++||++|++|+.
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~---------~~~~---~~~~~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ---------VEVR---SIQVTETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------EEEE---EEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------ceeE---EeeccCCcEEEEEEeCCCCEEEEECC
Confidence 4666788899999986 79999999999999998531 1111 22347889999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee-eEEeecCCCc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI-KTQCLLDGQK 595 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~-~s~~ll~g~~ 595 (1950)
||+|++||+.+++++.++. +|...|++++|+++ +..++ ++..+|.| ++|+..+. .....+.| |
T Consensus 76 d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~-----~~~l~-sgs~D~~v--------~lWd~~~~~~~~~~~~~-h 139 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPT-----KPYVL-SGSDDLTV--------KLWNWENNWALEQTFEG-H 139 (304)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSS-----SSEEE-EEETTSCE--------EEEEGGGTTEEEEEECC-C
T ss_pred CCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCC-----CCEEE-EECCCCeE--------EEEECCCCcchhhhhcc-c
Confidence 9999999999999999986 99999999999987 33444 44445544 44543332 34566778 8
Q ss_pred cccEEEeec
Q 000170 596 TGIVLSASP 604 (1950)
Q Consensus 596 ~g~Vla~sp 604 (1950)
.+.|.+++.
T Consensus 140 ~~~v~~v~~ 148 (304)
T 2ynn_A 140 EHFVMCVAF 148 (304)
T ss_dssp CSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 888855444
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.48 E-value=3.6e-12 Score=157.40 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=109.1
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+..+.+.++|+++++ .+||+|+.||.|++||+..+ +... ...+|.++|++|+|+++|++||+|+.|
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~---------~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs~D 171 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---------DFER---TLKGHTDSVQDISFDHSGKLLASCSAD 171 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC---------CCCE---EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------cEEE---EEeccCCcEEEEEEcCCCCEEEEEeCC
Confidence 445678899999986 79999999999999998532 1111 234589999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|+|++||+.++++++++. +|...|++++|+++ +..+ +++..+|. +++|+..+..+...+.| |.+
T Consensus 172 ~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~-----~~~l-~s~s~D~~--------i~~wd~~~~~~~~~~~~-h~~ 235 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPN-----GDHI-VSASRDKT--------IKMWEVQTGYCVKTFTG-HRE 235 (410)
T ss_dssp SCCCEEETTSSCEEECCC-CCSSCEEEEEECSS-----SSEE-EEEETTSE--------EEEEETTTCCEEEEEEC-CSS
T ss_pred CeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCC-----CCEE-EEEeCCCe--------EEEEECCCCcEEEEEeC-CCc
Confidence 999999999999999986 99999999999987 3344 44444554 45565556666777888 888
Q ss_pred cEEEeeccc
Q 000170 598 IVLSASPLL 606 (1950)
Q Consensus 598 ~Vla~spLp 606 (1950)
.|.++.+.|
T Consensus 236 ~v~~~~~~~ 244 (410)
T 1vyh_C 236 WVRMVRPNQ 244 (410)
T ss_dssp CEEEEEECT
T ss_pred cEEEEEECC
Confidence 886666533
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.48 E-value=3.2e-12 Score=154.79 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=96.1
Q ss_pred cCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 443 DHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 443 ~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
..+.+++++.++ .+|++|+.+|.|+|||+..+ .... .......+|.++|++|+|||||++||+|+.||+|+
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~------~~~~--~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDEN------ETLI--VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTT------SSCE--EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCC------Ccee--EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 345689999987 78999999999999998542 1111 11112346899999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL 591 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll 591 (1950)
+||+.++++++++. +|...|++++|++++ ..+++++..+|. +++|+..+.+....+
T Consensus 153 iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~-----~~~l~s~s~D~~--------v~iwd~~~~~~~~~~ 208 (344)
T 4gqb_B 153 VWDLAQQVVLSSYR-AHAAQVTCVAASPHK-----DSVFLSCSEDNR--------ILLWDTRCPKPASQI 208 (344)
T ss_dssp EEETTTTEEEEEEC-CCSSCEEEEEECSSC-----TTEEEEEETTSC--------EEEEETTSSSCEEEC
T ss_pred EEECCCCcEEEEEc-CcCCceEEEEecCCC-----CCceeeeccccc--------cccccccccceeeee
Confidence 99999999999997 999999999999873 345555544454 455554444433333
No 5
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.1e-11 Score=144.32 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=98.3
Q ss_pred cccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 439 AFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
.++...+.+.|+++++.+||+|+.||.|++||++.+ ....... .....|.++|++|+|+|||++||+|+.||
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~-------~~~~~~~-~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYD-------DFTLIDV-LDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSS-------CCEEEEE-ECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCC-------CeEEEEE-EecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 345567889999999999999999999999998531 1111110 01224899999999999999999999999
Q ss_pred cEEEEECCC-------CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec
Q 000170 519 HVTVWDVQR-------ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL 591 (1950)
Q Consensus 519 ~I~lWDl~~-------g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll 591 (1950)
+|+|||+.. ++++.++. +|..+|++++|+++ +.. ++++..+|.|..+..... ....++...+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~-----g~~-las~s~D~~v~iwd~~~~----~~~~~~~~~~ 149 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSND-----GYY-LATCSRDKSVWIWETDES----GEEYECISVL 149 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC-----CEEEEEECTT-----SCE-EEEEETTSCEEEEECCTT----CCCCEEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCC-----CCE-EEEEeCCCEEEEEeccCC----CCCeEEEEEe
Confidence 999999953 34566675 99999999999987 334 444444555544443100 0122455667
Q ss_pred CCCccccEEEeec
Q 000170 592 DGQKTGIVLSASP 604 (1950)
Q Consensus 592 ~g~~~g~Vla~sp 604 (1950)
.+ |.+.|.++.-
T Consensus 150 ~~-h~~~v~~v~~ 161 (330)
T 2hes_X 150 QE-HSQDVKHVIW 161 (330)
T ss_dssp CC-CSSCEEEEEE
T ss_pred cc-CCCceEEEEE
Confidence 78 8888854443
No 6
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.43 E-value=4.6e-11 Score=143.25 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=92.3
Q ss_pred cccccCCCcEEEEE--------cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE
Q 000170 439 AFRRDHGSPQVLAV--------HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL 510 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~--------s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~ 510 (1950)
.++.+.+.++|+++ ++.+||+|+.||+|++||+.... . ........ ....+|.++|++++|+|||.+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~-~-~~~~~~~~---~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEE-Q-NGYFGIPH---KALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSC-C-SSBSEEEE---EEECCCSSCEEEEEECSSTTE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCC-c-cccccccc---chhccCCCceEEEEECCCCCE
Confidence 35566778899988 45799999999999999985310 0 00011111 133569999999999999999
Q ss_pred EEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 511 LLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 511 LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|++|+.||+|++||+.++++++++. +|..+|++++|+++ +..++.++ .+|.|.++.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~-----~~~l~s~~-~d~~i~~wd 146 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPD-----NRQILSAG-AEREIKLWN 146 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSS-----TTEEEEEE-TTSCEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCC-----CCEEEEEc-CCCEEEEEe
Confidence 9999999999999999999999886 99999999999997 33444444 444444433
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.40 E-value=5.9e-11 Score=141.17 Aligned_cols=143 Identities=8% Similarity=0.131 Sum_probs=104.4
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|+.+.+.++++++++ .+||+|+.||+|++||++.+ +.+. ...+|.++|++++|+++|.+|++|+.
T Consensus 60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~---------~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~ 127 (319)
T 3frx_A 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG---------ETYQ---RFVGHKSDVMSVDIDKKASMIISGSR 127 (319)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEE---EEECCSSCEEEEEECTTSCEEEEEET
T ss_pred EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------CeeE---EEccCCCcEEEEEEcCCCCEEEEEeC
Confidence 3556677889998875 79999999999999998532 2221 22458999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKT 596 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~ 596 (1950)
||+|++||+. ++++.++. +|...|.++.|.+..........++++..+|.|. +|+..+.+....+.| |.
T Consensus 128 D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~--------~wd~~~~~~~~~~~~-h~ 196 (319)
T 3frx_A 128 DKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK--------AWNLNQFQIEADFIG-HN 196 (319)
T ss_dssp TSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEE--------EEETTTTEEEEEECC-CC
T ss_pred CCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEE--------EEECCcchhheeecC-CC
Confidence 9999999996 56777776 8999999999998532212233566666666544 454444555566778 88
Q ss_pred ccEEEeec
Q 000170 597 GIVLSASP 604 (1950)
Q Consensus 597 g~Vla~sp 604 (1950)
+.|.+++.
T Consensus 197 ~~v~~~~~ 204 (319)
T 3frx_A 197 SNINTLTA 204 (319)
T ss_dssp SCEEEEEE
T ss_pred CcEEEEEE
Confidence 88855444
No 8
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.5e-11 Score=142.13 Aligned_cols=141 Identities=18% Similarity=0.312 Sum_probs=96.5
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
+.+.++++++++ ++||+|+.||.|++||...... ......... ...+|.++|++++|||||++||+|+.||+|
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~--~~~~~~~~~---~~~~h~~~V~~v~~sp~g~~las~s~D~~v 131 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD--RTFEMDLLA---IIEGHENEVKGVAWSNDGYYLATCSRDKSV 131 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------CCCEEEE---EEC----CEEEEEECTTSCEEEEEETTSCE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC--ccccceeEE---EEcCCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence 456789999885 7999999999999999842100 000111111 235689999999999999999999999999
Q ss_pred EEEECCC-C---ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee--eEEeecCCC
Q 000170 521 TVWDVQR-A---SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI--KTQCLLDGQ 594 (1950)
Q Consensus 521 ~lWDl~~-g---~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~--~s~~ll~g~ 594 (1950)
++||+.. + +++.++. +|..+|++++|+++ +..++.++++ |. +++|+..+. ++...+.|
T Consensus 132 ~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~-----~~~l~s~s~D-~~--------i~iW~~~~~~~~~~~~~~~- 195 (330)
T 2hes_X 132 WIWETDESGEEYECISVLQ-EHSQDVKHVIWHPS-----EALLASSSYD-DT--------VRIWKDYDDDWECVAVLNG- 195 (330)
T ss_dssp EEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSS-----SSEEEEEETT-SC--------EEEEEEETTEEEEEEEECC-
T ss_pred EEEeccCCCCCeEEEEEec-cCCCceEEEEECCC-----CCEEEEEcCC-Ce--------EEEEECCCCCeeEEEEccC-
Confidence 9999943 2 4566775 99999999999987 3444444444 43 456654433 45667888
Q ss_pred ccccEEEeec
Q 000170 595 KTGIVLSASP 604 (1950)
Q Consensus 595 ~~g~Vla~sp 604 (1950)
|.+.|.++..
T Consensus 196 h~~~v~~~~~ 205 (330)
T 2hes_X 196 HEGTVWSSDF 205 (330)
T ss_dssp CSSCEEEEEE
T ss_pred CCCcEEEEEe
Confidence 9988855443
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.40 E-value=5.2e-11 Score=139.96 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=104.0
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+..+.+.++++++++ ++||+|+.+|.|++||...+ +... ....|.++|++++|+|||++|++|+.|
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~---------~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~d 86 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---------KFEK---TISGHKLGISDVAWSSDSNLLVSASDD 86 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEE---EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc---------ccch---hhccCCCceEEEEEcCCCCEEEEECCC
Confidence 345667889999886 79999999999999998431 1111 224588999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|.|++||+.++++++++. +|...|.+++|.++ ++ .++++..+|.|. +|+..+.+....+.+ |.+
T Consensus 87 ~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-----~~-~l~s~~~d~~i~--------iwd~~~~~~~~~~~~-~~~ 150 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQ-----SN-LIVSGSFDESVR--------IWDVKTGKCLKTLPA-HSD 150 (312)
T ss_dssp SEEEEEETTTCCEEEEEE-CCSSCEEEEEECSS-----SS-EEEEEETTSCEE--------EEETTTCCEEEEECC-CSS
T ss_pred CEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCC-----CC-EEEEEeCCCcEE--------EEECCCCEEEEEecC-CCC
Confidence 999999999999999886 89999999999986 33 455555555444 454444555566666 776
Q ss_pred cEEEeec
Q 000170 598 IVLSASP 604 (1950)
Q Consensus 598 ~Vla~sp 604 (1950)
.|.++..
T Consensus 151 ~v~~~~~ 157 (312)
T 4ery_A 151 PVSAVHF 157 (312)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 7744433
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.39 E-value=4.3e-11 Score=147.73 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=108.1
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.++...+.++|+++++ .+||+|+.||+|++||+..+ +++. ...+|.++|++++|+|+|.+|++|+.
T Consensus 145 ~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~---------~~~~---~~~~h~~~V~~v~~~p~~~~l~s~s~ 212 (410)
T 1vyh_C 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF---------ECIR---TMHGHDHNVSSVSIMPNGDHIVSASR 212 (410)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS---------CEEE---CCCCCSSCEEEEEECSSSSEEEEEET
T ss_pred EEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------ceeE---EEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 3455677899999875 79999999999999998431 2221 34568999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKT 596 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~ 596 (1950)
||+|++||+.++.+++++. +|...|..+.|.++ +..++.++. +|. +++|+..+.++...+.+ |.
T Consensus 213 D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~-----g~~l~s~s~-D~~--------v~vwd~~~~~~~~~~~~-h~ 276 (410)
T 1vyh_C 213 DKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQD-----GTLIASCSN-DQT--------VRVWVVATKECKAELRE-HR 276 (410)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTT-----SSEEEEEET-TSC--------EEEEETTTCCEEEEECC-CS
T ss_pred CCeEEEEECCCCcEEEEEe-CCCccEEEEEECCC-----CCEEEEEcC-CCe--------EEEEECCCCceeeEecC-CC
Confidence 9999999999999999997 99999999999987 344444444 443 45666556666677777 88
Q ss_pred ccEEEeec
Q 000170 597 GIVLSASP 604 (1950)
Q Consensus 597 g~Vla~sp 604 (1950)
+.|.+++.
T Consensus 277 ~~v~~~~~ 284 (410)
T 1vyh_C 277 HVVECISW 284 (410)
T ss_dssp SCEEEEEE
T ss_pred ceEEEEEE
Confidence 88854443
No 11
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.38 E-value=3.4e-11 Score=158.55 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=84.8
Q ss_pred ccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 440 FRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
++.+.+.++|++.++ ++||+|+.||.|++||+... +....... ....+|.++|++++||+||++|++|+.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~----~~~~~~~~---~~~~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD----DKAYGVAQ---RRLTGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCS----TTCSCEEE---EEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCC----Cccccccc---ceecCCCCcEEEEEECCCCCEEEEEeC
Confidence 456788899999874 68999999999999998531 00001111 123468999999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
||+|+|||+.++++.+++. +|...|++++|+++
T Consensus 451 Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~ 483 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLD 483 (694)
T ss_dssp TSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTT
T ss_pred CCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCC
Confidence 9999999999999998886 99999999999987
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.37 E-value=3.9e-11 Score=145.48 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=85.8
Q ss_pred cccCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 441 RRDHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
....+.+++++.++ ..+++|+.+|.|+|||+..+ .. . ........+|.++|++|+|+|||++||+|+.||+
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~------~~-~-~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEK------ES-L-LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeecccc------ce-e-EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 34566799999987 67888999999999998532 10 0 0111122468999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
|++||+.+++++..+. +|...|++++|++++ ...++++..+|.|.
T Consensus 163 v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~-----~~~~~s~~~dg~v~ 207 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYN-AHSSEVNCVAACPGK-----DTIFLSCGEDGRIL 207 (357)
T ss_dssp EEEEETTTTEEEEEEC-CCSSCEEEEEECTTC-----SSCEEEEETTSCEE
T ss_pred EEEEECCCCcEEEEEc-CCCCCEEEEEEccCC-----CceeeeeccCCceE
Confidence 9999999999999986 999999999999872 33444444444433
No 13
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.37 E-value=3.4e-11 Score=147.16 Aligned_cols=144 Identities=12% Similarity=0.143 Sum_probs=100.4
Q ss_pred cceeeeEEecCChhHHHHhhhccccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC
Q 000170 417 STTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD 493 (1950)
Q Consensus 417 ~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~ 493 (1950)
+..+.++.++....+...+ ..++.+.+.+++++.++ .+||+|+.||.|++||+..+........ .+. ...
T Consensus 56 ~g~i~v~~~~~~~~~~~~~--~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~---~~~ 128 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNV--PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE--PVI---TLE 128 (402)
T ss_dssp SCCEEEEETTCCEECCTTC--CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS--CSE---EEE
T ss_pred CCEEEEEECccCCCCCCCC--ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCC--ceE---Eec
Confidence 3445555554443332211 23556778899999965 7999999999999999854210000000 011 123
Q ss_pred CCCCCeEEEEEcCCC-CEEEEecCCCcEEEEECCCCceeeeec-cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 494 RSPAPVTAMCFNQPG-DLLLAGYADGHVTVWDVQRASAAKVIT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG-~~LasG~~dG~I~lWDl~~g~~l~tl~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
+|.++|++|+|+|+| .+|++|+.||+|++||+.+++++.++. .+|...|++++|+++ +..+++++ .+|.|..
T Consensus 129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~d~~i~i 202 (402)
T 2aq5_A 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD-----GALICTSC-RDKRVRV 202 (402)
T ss_dssp CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT-----SSCEEEEE-TTSEEEE
T ss_pred CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC-----CCEEEEEe-cCCcEEE
Confidence 588999999999998 699999999999999999999998884 489999999999987 33444444 4454444
Q ss_pred Ec
Q 000170 572 HS 573 (1950)
Q Consensus 572 h~ 573 (1950)
+.
T Consensus 203 wd 204 (402)
T 2aq5_A 203 IE 204 (402)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.36 E-value=6.6e-12 Score=150.00 Aligned_cols=134 Identities=18% Similarity=0.226 Sum_probs=104.7
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
....++++++++ ++||+|+.+|.|++||.+.+ +.+. ...+|.++|++++|+|||++||+|+.||.|
T Consensus 163 ~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~---------~~~~---~~~~h~~~v~~l~~spd~~~l~s~s~dg~i 230 (321)
T 3ow8_A 163 RGKFILSIAYSPDGKYLASGAIDGIINIFDIATG---------KLLH---TLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230 (321)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEE---EECCCSSCCCEEEECTTSCEEEEECTTSCE
T ss_pred CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEE---EEcccCCceeEEEEcCCCCEEEEEcCCCeE
Confidence 344578888875 79999999999999998532 2221 235688999999999999999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEE
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vl 600 (1950)
++||+.++++..++. +|...|++++|+++ +..++.++ .+|. +++|+..+.++...+.+ |.+.|.
T Consensus 231 ~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~-----~~~l~s~s-~D~~--------v~iwd~~~~~~~~~~~~-h~~~v~ 294 (321)
T 3ow8_A 231 KIYDVQHANLAGTLS-GHASWVLNVAFCPD-----DTHFVSSS-SDKS--------VKVWDVGTRTCVHTFFD-HQDQVW 294 (321)
T ss_dssp EEEETTTCCEEEEEC-CCSSCEEEEEECTT-----SSEEEEEE-TTSC--------EEEEETTTTEEEEEECC-CSSCEE
T ss_pred EEEECCCcceeEEEc-CCCCceEEEEECCC-----CCEEEEEe-CCCc--------EEEEeCCCCEEEEEEcC-CCCcEE
Confidence 999999999998886 99999999999997 33444444 4443 55666556667777888 888885
Q ss_pred Eeec
Q 000170 601 SASP 604 (1950)
Q Consensus 601 a~sp 604 (1950)
+++-
T Consensus 295 ~v~~ 298 (321)
T 3ow8_A 295 GVKY 298 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 15
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.35 E-value=2.3e-10 Score=141.94 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=92.8
Q ss_pred ccccCCC-cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 440 FRRDHGS-PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 440 f~~~~G~-pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
++.+.+. ++|+++++++||+|+.||.|++||.+.+ +.+. ...+|.++|++++|++++ +|++|+.||
T Consensus 117 l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~---------~~~~---~~~~h~~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 117 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK---------KFLL---QLSGHDGGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------EEEE---EECCCSSCEEEEEECSTT-EEEEEETTS
T ss_pred EcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC---------cEEE---EEeCCCcCEEEEEEcCCC-EEEEEeCCC
Confidence 3445555 4899999999999999999999998531 2221 234699999999999999 999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+|++||+.+++++.++. +|..+|.+++|.+.. ....++++..+|.|..+..
T Consensus 184 ~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~----~~~~l~s~s~d~~i~vwd~ 234 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYK----NIKYIVTGSRDNTLHVWKL 234 (464)
T ss_dssp CEEEEETTTTEEEEEEC-CCSSCEEEEEEEESS----SCEEEEEEETTSCEEEEEC
T ss_pred CEEEEECCCCcEEEEEC-CCCCccEEEEEecCC----CCCEEEEEcCCCcEEEeeC
Confidence 99999999999999886 899999999999631 2345666666666655554
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.35 E-value=1.1e-10 Score=137.75 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=87.5
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+....+.++++++++ ++||+|+.||.|++||...+ +.+. ...+|.++|++|+|+|+|.+||+|+.|
T Consensus 51 ~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~---------~~~~---~~~~h~~~v~~~~~~~~~~~l~sgs~D 118 (304)
T 2ynn_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---------EKVV---DFEAHPDYIRSIAVHPTKPYVLSGSDD 118 (304)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---------CEEE---EEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred eeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC---------cEEE---EEeCCCCcEEEEEEcCCCCEEEEECCC
Confidence 334556678877764 89999999999999998532 1221 224589999999999999999999999
Q ss_pred CcEEEEECCCCce-eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 GHVTVWDVQRASA-AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 G~I~lWDl~~g~~-l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|+|++||+.++.. .+++. +|...|++++|+|++ +. .++++..+|.|..+.
T Consensus 119 ~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~----~~-~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 119 LTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKD----PS-TFASGCLDRTVKVWS 169 (304)
T ss_dssp SCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTC----TT-EEEEEETTSEEEEEE
T ss_pred CeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCC----CC-EEEEEeCCCeEEEEE
Confidence 9999999998854 45554 999999999999852 23 444555555444444
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.34 E-value=1.1e-10 Score=139.52 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=103.8
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+....+.++|+++++ .++|+|+.||+|++||+..+ +++. ....+...|++++|+|||++||+|+.|
T Consensus 76 l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---------~~~~---~~~~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---------KQIK---SIDAGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------EEEE---EEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred eccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---------CEEE---EEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 455677889999886 68999999999999998532 2221 123467789999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|.|++||+.+++....+. .|...|.+++|+++ +..++++ ..+|.| ++|+..+.+....+.| |.+
T Consensus 144 g~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spd-----g~~lasg-~~dg~i--------~iwd~~~~~~~~~~~~-h~~ 207 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLD-TRGKFILSIAYSPD-----GKYLASG-AIDGII--------NIFDIATGKLLHTLEG-HAM 207 (321)
T ss_dssp SEEEEEETTTCSEEEEEE-CSSSCEEEEEECTT-----SSEEEEE-ETTSCE--------EEEETTTTEEEEEECC-CSS
T ss_pred CcEEEEEcCCCceeEEec-CCCceEEEEEECCC-----CCEEEEE-cCCCeE--------EEEECCCCcEEEEEcc-cCC
Confidence 999999999999888886 88899999999997 3444444 444544 4555445555666777 777
Q ss_pred cE--EEeec
Q 000170 598 IV--LSASP 604 (1950)
Q Consensus 598 ~V--la~sp 604 (1950)
.| ++++|
T Consensus 208 ~v~~l~~sp 216 (321)
T 3ow8_A 208 PIRSLTFSP 216 (321)
T ss_dssp CCCEEEECT
T ss_pred ceeEEEEcC
Confidence 76 44444
No 18
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.34 E-value=5.8e-10 Score=130.00 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=92.6
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEec
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~ 515 (1950)
++.+.+.++|+++++ .+||+|+.+|.|++||+..+ ....+ .. .....|.++|++|+|++ ||.+|++|+
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~-~~--~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD-----TSNWE-LS--DSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSS-----SCCEE-EE--EEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCC-----CCcce-ec--ceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 345677899999875 79999999999999998532 01101 11 12345899999999999 799999999
Q ss_pred CCCcEEEEECCCC---------ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 516 ADGHVTVWDVQRA---------SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 516 ~dG~I~lWDl~~g---------~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.||.|++||+.++ +.+..+. +|..+|++++|.++. ....++++..+|.|..+..
T Consensus 79 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~----~~~~l~~~~~dg~v~iwd~ 141 (351)
T 3f3f_A 79 YDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAH----LGLKLACLGNDGILRLYDA 141 (351)
T ss_dssp TTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGG----GCSEEEEEETTCEEEEEEC
T ss_pred CCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCC----CCcEEEEecCCCcEEEecC
Confidence 9999999999987 4466665 899999999999861 1245666666676666664
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.33 E-value=4.9e-10 Score=131.77 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=92.2
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.++.+.|.++||++++ ++||+|+.||+|+|||+.... ... .... ....+|.++|++++|+|||++|++|+
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~----~~~--~~~~-~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE----TNY--GIPQ-RALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS----SCS--EEEE-EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC----ccc--ceee-EEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 4667889999999984 699999999999999985321 011 1111 13356899999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.||.|++|+...+....... .|...+..+.|.++ .+. ++++..+|.+..+.
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~-l~s~s~d~~~~~~d 156 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFV-GHTKDVLSVAFSSD-----NRQ-IVSGSRDKTIKLWN 156 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTT-----SSC-EEEEETTSCEEEEC
T ss_pred ccccceEEeecccceeeeec-CCCCceeEEEEeec-----Ccc-ceeecCCCeEEEEE
Confidence 99999999999998877665 77889999999976 333 44444555554444
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.33 E-value=1.5e-10 Score=147.50 Aligned_cols=113 Identities=18% Similarity=0.235 Sum_probs=89.4
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+..+.+.++|+++++ ++||+|+.||.|+|||... +.+. ...+|.++|++|+|||||++||+|+.|
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~----------~~~~---~l~gh~~~V~~l~fspdg~~las~~~d 78 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQ---TLTGHSSSVWGVAFSPDGQTIASASDD 78 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------CEEE---EEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC----------CEEE---EEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence 445678899999986 7999999999999999521 1111 234589999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|+|+|||+ ++++++++. +|..+|.+++|+++ +..++ ++..+|.+..+.
T Consensus 79 ~~i~vWd~-~~~~~~~~~-~~~~~v~~~~~s~d-----~~~l~-~~~~d~~~~~~~ 126 (577)
T 2ymu_A 79 KTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPD-----GQTIA-SASDDKTVKLWN 126 (577)
T ss_dssp SCEEEEET-TSCEEEEEC-CCSSCEEEEEECTT-----SSEEE-EEETTSCEEEEE
T ss_pred CEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCC-----CCEEE-EEcCCCceeecc
Confidence 99999996 678888887 99999999999997 33444 444455544444
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.33 E-value=2.5e-10 Score=136.81 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=104.3
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.++.+.+.++|+++++ .+||+|+.||.|++||...+ +.+. ....|.++|.+++|+|||++||+|+.
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~---------~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT---------NKVH---AIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---------CEEE---EEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---------Ccce---EeecCCccEEEEEECCCCCEEEEEeC
Confidence 4556778899999875 69999999999999998431 1111 12347889999999999999999999
Q ss_pred CCcEEEEECCCCc----eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecC
Q 000170 517 DGHVTVWDVQRAS----AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLD 592 (1950)
Q Consensus 517 dG~I~lWDl~~g~----~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~ 592 (1950)
||.|++||+.++. ..+.+. +|...|.++.|.++ + . ++++..+|. +++|+..+.+....+.
T Consensus 118 d~~v~iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~-----~-~-l~s~s~d~~--------i~~wd~~~~~~~~~~~ 181 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDD-----N-Q-IVTSSGDTT--------CALWDIETGQQTTTFT 181 (340)
T ss_dssp TCEEEEEETTTCSBSCEEEEEEE-CCSSCEEEEEEEET-----T-E-EEEEETTSC--------EEEEETTTTEEEEEEC
T ss_pred CCeEEEEECccCCCcceeEEEec-CCCccEEEEEECCC-----C-c-EEEEECCCc--------EEEEECCCCcEEEEEc
Confidence 9999999998764 344554 89999999999976 2 2 344444443 4556655666677788
Q ss_pred CCccccEEEeeccc
Q 000170 593 GQKTGIVLSASPLL 606 (1950)
Q Consensus 593 g~~~g~Vla~spLp 606 (1950)
| |.+.|.+++..|
T Consensus 182 ~-h~~~v~~~~~~~ 194 (340)
T 1got_B 182 G-HTGDVMSLSLAP 194 (340)
T ss_dssp C-CSSCEEEEEECT
T ss_pred C-CCCceEEEEECC
Confidence 8 888886655533
No 22
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.32 E-value=1.1e-10 Score=155.13 Aligned_cols=138 Identities=12% Similarity=0.178 Sum_probs=105.5
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.|..+.+.++|++.++ .+||+|+.+|.|.+||...+ +.+. ....|.++|++++|||||++||+|+.
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~---------~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~ 75 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ---------VEVR---SIQVTETPVRAGKFIARKNWIIVGSD 75 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------EEEE---EEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCC---------ceEE---EEecCCCcEEEEEEeCCCCEEEEEeC
Confidence 4566788899999996 79999999999999998431 2121 22358899999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee-eEEeecCCCc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI-KTQCLLDGQK 595 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~-~s~~ll~g~~ 595 (1950)
||.|++||+.+++.+.++. +|...|++++|+++ +.. +++++.+|.|..++. .+. .....+.+ |
T Consensus 76 dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~-----~~~-l~~~~~dg~i~vw~~--------~~~~~~~~~~~~-~ 139 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPT-----KPY-VLSGSDDLTVKLWNW--------ENNWALEQTFEG-H 139 (814)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSS-----SSE-EEEEETTSEEEEEEG--------GGTSEEEEEEEC-C
T ss_pred CCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCC-----CCE-EEEEcCCCEEEEEEC--------CCCceEEEEEcC-C
Confidence 9999999999999998886 89999999999987 333 445556665555543 222 34455666 7
Q ss_pred cccEEEeec
Q 000170 596 TGIVLSASP 604 (1950)
Q Consensus 596 ~g~Vla~sp 604 (1950)
.+.|.+++.
T Consensus 140 ~~~v~~~~~ 148 (814)
T 3mkq_A 140 EHFVMCVAF 148 (814)
T ss_dssp SSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 777744433
No 23
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.32 E-value=2.5e-10 Score=159.55 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=110.9
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
++.+.+.++|+++++ ++||+|+.+|.|++||...+ +.+. ...+|.++|++++|||||++||+|+.|
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~---------~~~~---~~~~h~~~v~~~~~s~~~~~l~s~~~d 678 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---------EKLL---DIKAHEDEVLCCAFSSDDSYIATCSAD 678 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEE---EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------CEEE---EeccCCCCEEEEEEecCCCEEEEEeCC
Confidence 445678899999986 79999999999999998532 1121 234689999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|+|++||+.+|+++.++. +|..+|++++|++++ ....++++..+|.|.. |+..+.++...+.| |.+
T Consensus 679 ~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~----~~~~l~sg~~d~~v~v--------wd~~~~~~~~~~~~-h~~ 744 (1249)
T 3sfz_A 679 KKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKS----NHLLLATGSNDFFLKL--------WDLNQKECRNTMFG-HTN 744 (1249)
T ss_dssp SEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSS----SCCEEEEEETTSCEEE--------EETTSSSEEEEECC-CSS
T ss_pred CeEEEEECCCCceEEEEc-CCCCcEEEEEEecCC----CceEEEEEeCCCeEEE--------EECCCcchhheecC-CCC
Confidence 999999999999999997 999999999999862 3456666666665544 44445566677778 888
Q ss_pred cEEEeeccc
Q 000170 598 IVLSASPLL 606 (1950)
Q Consensus 598 ~Vla~spLp 606 (1950)
.|.+++..|
T Consensus 745 ~v~~~~~sp 753 (1249)
T 3sfz_A 745 SVNHCRFSP 753 (1249)
T ss_dssp CEEEEEECS
T ss_pred CEEEEEEec
Confidence 886555433
No 24
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.32 E-value=6.2e-10 Score=131.75 Aligned_cols=116 Identities=11% Similarity=0.115 Sum_probs=91.6
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
++.+.+.++|+++++ ++||+|+.+|.|.+||...+ +.+. ....|.++|++++|+|||++|++|+.|
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~---~~~~h~~~v~~~~~~~~~~~l~s~~~d 95 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG---------ERLG---TLDGHTGTIWSIDVDCFTKYCVTGSAD 95 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC---------CEEE---EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc---------hhhh---hhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence 344667789999875 79999999999999998431 1121 234588999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC----CceEEEEcc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT----KGLVQLHSL 574 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~----~G~V~~h~f 574 (1950)
|.|++||+.+++++..+. |..+|.+++|+++ +..+++++++ .|.|..+..
T Consensus 96 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~-----~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWK--SPVPVKRVEFSPC-----GNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp TEEEEEETTTCCEEEEEE--CSSCEEEEEECTT-----SSEEEEEECCBTTBCCEEEEEEE
T ss_pred CeEEEEECCCCcEEEEee--cCCCeEEEEEccC-----CCEEEEecCCccCCCCEEEEEEe
Confidence 999999999999998885 8899999999987 3455555544 255555544
No 25
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.6e-10 Score=137.70 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=104.3
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEEe
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~LasG 514 (1950)
.++.+.+.++|+++++ .+||+|+.+|.|++||+.. ...+... ....|.++|++|+|+++ |.+|++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------ETHKLID---TLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEET-------TEEEEEE---EECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCC-------Ccceeee---EecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 3456778899999885 7999999999999999842 1112111 23568999999999988 9999999
Q ss_pred cCCCcEEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecC
Q 000170 515 YADGHVTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLD 592 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~ 592 (1950)
+.||.|++||+.+++ .+..+. +|..+|++++|++++ ....++++..+|.|..+...... ......+.
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~------~~~~~~~~ 144 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHE----YGPLLLVASSDGKVSVVEFKENG------TTSPIIID 144 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGG----GCSEEEEEETTSEEEEEECCTTS------CCCEEEEE
T ss_pred ccCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCC----CCCEEEEecCCCcEEEEecCCCC------ceeeEEec
Confidence 999999999999997 666665 899999999999861 12355556666666666543110 11223445
Q ss_pred CCccccEEEeeccc
Q 000170 593 GQKTGIVLSASPLL 606 (1950)
Q Consensus 593 g~~~g~Vla~spLp 606 (1950)
+ |.+.|.+++..|
T Consensus 145 ~-~~~~v~~~~~~~ 157 (379)
T 3jrp_A 145 A-HAIGVNSASWAP 157 (379)
T ss_dssp C-CTTCEEEEEECC
T ss_pred C-CCCceEEEEEcC
Confidence 5 777775544433
No 26
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.30 E-value=3.7e-10 Score=133.65 Aligned_cols=117 Identities=16% Similarity=0.281 Sum_probs=90.4
Q ss_pred ccccCCCcEEEEEcC-----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe
Q 000170 440 FRRDHGSPQVLAVHP-----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~-----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG 514 (1950)
++...+.++|+++++ .+||+|+.+|.|++||+... ...+.. ....|.++|++++|+|||++|++|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------GQTIPK--AQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--------SCEEEE--EEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--------CceeEE--EeccccCCEEEEEECcCCCEEEEE
Confidence 455678899999996 58999999999999998531 111111 223488999999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeeccCcCCCeEEEEE--ecCCCccCCceEEEEecCCceEEEEcc
Q 000170 515 YADGHVTVWDVQRASAAKVITGEHTSPVVHTLF--LGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F--~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+.||.|++||+.++++.... +|..+|++++| .++ ...++++..+|.|..+..
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~------~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPN------YSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSS------CEEEEEEETTSEEEEECS
T ss_pred cCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCC------CCEEEEccCCCcEEEEEC
Confidence 99999999999999987644 79999999999 544 245556656665555543
No 27
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.29 E-value=3.4e-10 Score=139.58 Aligned_cols=132 Identities=17% Similarity=0.282 Sum_probs=98.4
Q ss_pred cEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 447 PQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 447 pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
..+|+-++ ++||||. +++|+|||...+ ++..+ ....+|.+.|+||+|||||++||+|+.||+|+|||+
T Consensus 108 ~~~l~wS~~n~lAvgl-d~tV~lWd~~tg---------~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 108 LNLVDWSSGNVLAVAL-DNSVYLWSASSG---------DILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp CBCEEECTTSEEEEEE-TTEEEEEETTTC---------CEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceeEEECCCCEEEEEe-CCEEEEEECCCC---------CEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEc
Confidence 46677764 7999997 899999998542 22211 145568889999999999999999999999999999
Q ss_pred CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecc
Q 000170 526 QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPL 605 (1950)
Q Consensus 526 ~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spL 605 (1950)
.++++++++. +|...|.++.|.+. .++++..+|.++.+... . .......+.| |.+.+..+...
T Consensus 177 ~~~~~~~~~~-~h~~~v~~~s~~~~--------~l~sgs~d~~i~~~d~~-~------~~~~~~~~~~-h~~~~~~~~~~ 239 (420)
T 4gga_A 177 QQQKRLRNMT-SHSARVGSLSWNSY--------ILSSGSRSGHIHHHDVR-V------AEHHVATLSG-HSQEVCGLRWA 239 (420)
T ss_dssp TTTEEEEEEC-CCSSCEEEEEEETT--------EEEEEETTSEEEEEETT-S------SSCEEEEEEC-CSSCEEEEEEC
T ss_pred CCCcEEEEEe-CCCCceEEEeeCCC--------EEEEEeCCCceeEeeec-c------cceeeEEecc-cccceeeeeec
Confidence 9999999987 99999999998753 56666677777776642 1 1112344566 77777655543
Q ss_pred c
Q 000170 606 L 606 (1950)
Q Consensus 606 p 606 (1950)
|
T Consensus 240 ~ 240 (420)
T 4gga_A 240 P 240 (420)
T ss_dssp T
T ss_pred C
Confidence 3
No 28
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.29 E-value=3.6e-10 Score=135.93 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=99.9
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...+.+++++.++ ++||+|+.||.|++||...+ ..+++. ...+|.++|++|+|+|||++||+|+.||+
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-------~~~~~~---~~~~h~~~v~~v~~sp~~~~l~s~s~D~~ 128 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-------DFECVT---TLEGHENEVKSVAWAPSGNLLATCSRDKS 128 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------EEEEE---EECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC-------CeEEEE---EccCCCCCceEEEEeCCCCEEEEEECCCe
Confidence 3566789999885 79999999999999997421 111111 33568999999999999999999999999
Q ss_pred EEEEECCCCc---eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee--eEEeecCCC
Q 000170 520 VTVWDVQRAS---AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI--KTQCLLDGQ 594 (1950)
Q Consensus 520 I~lWDl~~g~---~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~--~s~~ll~g~ 594 (1950)
|++||+.++. ++..+. +|...|.+++|+++ +..++.++.+ |. +++|+..+. .+...+.|
T Consensus 129 v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~-----~~~l~s~s~d-~~--------i~~w~~~~~~~~~~~~~~~- 192 (345)
T 3fm0_A 129 VWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPS-----QELLASASYD-DT--------VKLYREEEDDWVCCATLEG- 192 (345)
T ss_dssp EEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSS-----SSCEEEEETT-SC--------EEEEEEETTEEEEEEEECC-
T ss_pred EEEEECCCCCCeEEEEEec-CcCCCeEEEEECCC-----CCEEEEEeCC-Cc--------EEEEEecCCCEEEEEEecC-
Confidence 9999998764 445554 89999999999987 3445555444 43 344543222 23456778
Q ss_pred ccccEEEeec
Q 000170 595 KTGIVLSASP 604 (1950)
Q Consensus 595 ~~g~Vla~sp 604 (1950)
|.+.|.+++-
T Consensus 193 h~~~v~~l~~ 202 (345)
T 3fm0_A 193 HESTVWSLAF 202 (345)
T ss_dssp CSSCEEEEEE
T ss_pred CCCceEEEEE
Confidence 8888854443
No 29
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.29 E-value=3.5e-10 Score=137.88 Aligned_cols=127 Identities=15% Similarity=0.261 Sum_probs=93.3
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceee
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAK 532 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~ 532 (1950)
++++||+|+.+|.|.+||...+ +... ....|.++|++++|+|||++|++|+.||+|++||+.++++++
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~---------~~~~---~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~ 175 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFN---------LQRE---IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 175 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSC---------EEEE---ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE
T ss_pred CCCEEEEEECCCCEEEEeCCCc---------ceee---ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce
Confidence 4589999999999999998431 2221 234689999999999999999999999999999999999999
Q ss_pred eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC--CccccEEEeeccc
Q 000170 533 VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG--QKTGIVLSASPLL 606 (1950)
Q Consensus 533 tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g--~~~g~Vla~spLp 606 (1950)
++. +|..+|++++|+++ +.. ++++..+|.|. +|+..+.+....+.+ .+.+.|.++...|
T Consensus 176 ~~~-~h~~~v~~~~~~~~-----~~~-l~s~~~d~~v~--------iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 236 (420)
T 3vl1_A 176 TLI-GHRATVTDIAIIDR-----GRN-VLSASLDGTIR--------LWECGTGTTIHTFNRKENPHDGVNSIALFV 236 (420)
T ss_dssp EEE-CCSSCEEEEEEETT-----TTE-EEEEETTSCEE--------EEETTTTEEEEEECBTTBTTCCEEEEEEEE
T ss_pred EEc-CCCCcEEEEEEcCC-----CCE-EEEEcCCCcEE--------EeECCCCceeEEeecCCCCCCCccEEEEec
Confidence 886 99999999999987 333 44555555444 444334444444443 1445565444443
No 30
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.29 E-value=5.5e-10 Score=133.14 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=90.6
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+....+.+++++.++ .+||+|+.+|.|++||+..+ ...... ....|.++|++++|++||++|++|+.|
T Consensus 48 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d 117 (372)
T 1k8k_C 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-------TWKPTL---VILRINRAARCVRWAPNEKKFAVGSGS 117 (372)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT-------EEEEEE---ECCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC-------eeeeeE---EeecCCCceeEEEECCCCCEEEEEeCC
Confidence 445667789999884 79999999999999998431 111111 234578899999999999999999999
Q ss_pred CcEEEEECCCCc---eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 GHVTVWDVQRAS---AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 G~I~lWDl~~g~---~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|.|++||+.+++ ....+..+|...|++++|+++ ++ .++++..+|.|..+.
T Consensus 118 ~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~-~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 118 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-----SV-LLAAGSCDFKCRIFS 170 (372)
T ss_dssp SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-----SS-EEEEEETTSCEEEEE
T ss_pred CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC-----CC-EEEEEcCCCCEEEEE
Confidence 999999999887 345555689999999999986 33 455555566666655
No 31
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.28 E-value=3.1e-10 Score=138.63 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=97.9
Q ss_pred CCcEEEEEcCCEEEE---EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcE
Q 000170 445 GSPQVLAVHPSFIAV---GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHV 520 (1950)
Q Consensus 445 G~pt~ia~s~~~IAv---Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I 520 (1950)
....++++++.++++ |+.+|.|.|||+... .+.........+|.++|++++|+| ++++||+|+.||+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~--------~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v 106 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKT--------GRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV 106 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCC--------EECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccC--------CCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeE
Confidence 345678888876655 788999999998421 110000012356899999999999 99999999999999
Q ss_pred EEEECCCC-------ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec--
Q 000170 521 TVWDVQRA-------SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL-- 591 (1950)
Q Consensus 521 ~lWDl~~g-------~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll-- 591 (1950)
++||+.++ +++..+. +|..+|++++|+++ +...++++..+|.|.. |+..+.+....+
T Consensus 107 ~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~-----~~~~l~s~~~dg~i~i--------wd~~~~~~~~~~~~ 172 (402)
T 2aq5_A 107 MVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPT-----AQNVLLSAGCDNVILV--------WDVGTGAAVLTLGP 172 (402)
T ss_dssp EEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSS-----BTTEEEEEETTSCEEE--------EETTTTEEEEEECT
T ss_pred EEEEccCCCCccccCCceEEec-CCCCeEEEEEECcC-----CCCEEEEEcCCCEEEE--------EECCCCCccEEEec
Confidence 99999998 5667775 99999999999987 3335555555565544 444445555556
Q ss_pred CCCccccEEEeec
Q 000170 592 DGQKTGIVLSASP 604 (1950)
Q Consensus 592 ~g~~~g~Vla~sp 604 (1950)
.+ |.+.|.+++.
T Consensus 173 ~~-~~~~v~~~~~ 184 (402)
T 2aq5_A 173 DV-HPDTIYSVDW 184 (402)
T ss_dssp TT-CCSCEEEEEE
T ss_pred CC-CCCceEEEEE
Confidence 56 7777755544
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.28 E-value=3.3e-10 Score=134.98 Aligned_cols=141 Identities=9% Similarity=0.006 Sum_probs=98.2
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..+.++|+++++ ++||+|+.+|.|++||...+ ..+... ....|.++|++++|+|||++|++|+.||.|
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-------~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 76 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-------KWVQVH---ELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 76 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-------EEEEEE---EEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-------cEEeee---eecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence 567789999985 79999999999999998421 100111 223588999999999999999999999999
Q ss_pred EEEECCCCceeeeec-cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE
Q 000170 521 TVWDVQRASAAKVIT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
++||+.+++....+. .+|...|++++|+++ ++ .++++..+|.|..+.+.....|. ....+..+ |.+.|
T Consensus 77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~-~l~~~~~d~~v~i~d~~~~~~~~----~~~~~~~~-~~~~i 145 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVILRINRAARCVRWAPN-----EK-KFAVGSGSRVISICYFEQENDWW----VCKHIKKP-IRSTV 145 (372)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTT-----SS-EEEEEETTSSEEEEEEETTTTEE----EEEEECTT-CCSCE
T ss_pred EEEECCCCeeeeeEEeecCCCceeEEEECCC-----CC-EEEEEeCCCEEEEEEecCCCcce----eeeeeecc-cCCCe
Confidence 999999988654442 379999999999987 33 44444555666555543111110 12334444 66667
Q ss_pred EEeec
Q 000170 600 LSASP 604 (1950)
Q Consensus 600 la~sp 604 (1950)
.++..
T Consensus 146 ~~~~~ 150 (372)
T 1k8k_C 146 LSLDW 150 (372)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 54444
No 33
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.28 E-value=4.3e-11 Score=143.55 Aligned_cols=139 Identities=12% Similarity=0.153 Sum_probs=104.3
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.+....+.++++++++ .++++|+.||.|++||.+.+ ++.. ...+|.++|++|+|+|||.+||+|+.
T Consensus 179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~---------~~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---------MCRQ---TFTGHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------SEEE---EECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC---------eeEE---EEcCCcCCEEEEEEcCCCCEEEEEcC
Confidence 3455677899999986 69999999999999998542 1111 23458899999999999999999999
Q ss_pred CCcEEEEECCCCceeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 517 DGHVTVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
||+|++||+.+++.+.++.. .|..+|++++|+++ +..+++++ .+|.| ++|+..+.+....+.| |
T Consensus 247 d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~g~-~d~~i--------~vwd~~~~~~~~~~~~-h 311 (340)
T 1got_B 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----GRLLLAGY-DDFNC--------NVWDALKADRAGVLAG-H 311 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----SSEEEEEE-TTSEE--------EEEETTTCCEEEEEEC-C
T ss_pred CCcEEEEECCCCcEEEEEccCCcccceEEEEECCC-----CCEEEEEC-CCCeE--------EEEEcccCcEeeEeec-C
Confidence 99999999999988877641 33468999999997 34455444 44544 4455444555667788 9
Q ss_pred cccEEEeec
Q 000170 596 TGIVLSASP 604 (1950)
Q Consensus 596 ~g~Vla~sp 604 (1950)
.+.|.+++.
T Consensus 312 ~~~v~~~~~ 320 (340)
T 1got_B 312 DNRVSCLGV 320 (340)
T ss_dssp SSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 988855444
No 34
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.27 E-value=5.7e-10 Score=138.10 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=99.8
Q ss_pred CCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 444 HGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 444 ~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.+.++|+++++++||+|+.+|.|++||...+ +... ...+|.++|++++| ||.+|++|+.||+|++|
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~---------~~~~---~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL---------ECKR---ILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSC---------CEEE---EECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCC---------eEEE---EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 4568999999999999999999999998431 1121 23458999999999 89999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEee
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSAS 603 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~s 603 (1950)
|+.+++++.++. +|..+|++++|.++ .++++..+|.|..+...... .......+.| |.+.|.+++
T Consensus 199 d~~~~~~~~~~~-~h~~~v~~l~~~~~--------~l~s~s~dg~i~vwd~~~~~-----~~~~~~~~~~-~~~~v~~~~ 263 (435)
T 1p22_A 199 DVNTGEMLNTLI-HHCEAVLHLRFNNG--------MMVTCSKDRSIAVWDMASPT-----DITLRRVLVG-HRAAVNVVD 263 (435)
T ss_dssp ESSSCCEEEEEC-CCCSCEEEEECCTT--------EEEEEETTSCEEEEECSSSS-----CCEEEEEECC-CSSCEEEEE
T ss_pred ECCCCcEEEEEc-CCCCcEEEEEEcCC--------EEEEeeCCCcEEEEeCCCCC-----CceeeeEecC-CCCcEEEEE
Confidence 999999999997 89999999999853 45555566666665542110 1122355666 777776555
Q ss_pred c
Q 000170 604 P 604 (1950)
Q Consensus 604 p 604 (1950)
+
T Consensus 264 ~ 264 (435)
T 1p22_A 264 F 264 (435)
T ss_dssp E
T ss_pred e
Confidence 4
No 35
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.27 E-value=6.2e-10 Score=133.44 Aligned_cols=142 Identities=10% Similarity=0.045 Sum_probs=98.5
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
++.+.+.++++++++ .++|+|+.||+|++||++.+ +.+. ...+|.++|++++|+|||++|++|+.|
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---------~~~~---~~~~h~~~v~~v~~sp~~~~l~s~~~d 139 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---------TTYK---RFVGHQSEVYSVAFSPDNRQILSAGAE 139 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---------CEEE---EEECCCSCEEEEEECSSTTEEEEEETT
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------cEEE---EEcCCCCcEEEEEECCCCCEEEEEcCC
Confidence 445667789999875 79999999999999998542 1121 224589999999999999999999999
Q ss_pred CcEEEEECCCCceeeeec--cCcCCCeEEEEEecCCCccC----CceEEEEecCCceEEEEcccccccccceeeeEEeec
Q 000170 518 GHVTVWDVQRASAAKVIT--GEHTSPVVHTLFLGQDSQVT----RQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL 591 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~--~~H~~~I~~v~F~~d~~~~~----~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll 591 (1950)
|+|++||+... +..... .+|...|.+++|++++.... ....++++..+|.|. +|+. .......+
T Consensus 140 ~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~--------iwd~-~~~~~~~~ 209 (343)
T 2xzm_R 140 REIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLK--------VWNT-NFQIRYTF 209 (343)
T ss_dssp SCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEE--------EEET-TTEEEEEE
T ss_pred CEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEE--------EEcC-CCceeEEE
Confidence 99999999843 333332 37899999999998731100 012455555555444 4442 23344556
Q ss_pred CCCccccEEEeec
Q 000170 592 DGQKTGIVLSASP 604 (1950)
Q Consensus 592 ~g~~~g~Vla~sp 604 (1950)
.+ |.+.|.+++.
T Consensus 210 ~~-h~~~v~~~~~ 221 (343)
T 2xzm_R 210 KA-HESNVNHLSI 221 (343)
T ss_dssp EC-CSSCEEEEEE
T ss_pred cC-ccccceEEEE
Confidence 67 7777754443
No 36
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.27 E-value=9.7e-10 Score=134.51 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=98.7
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
+++++.++..+++|+.+|.|.+||...+ +.... ....|.++|++++|+|||++||+|+.||.|++||+.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~---------~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSG---------SVSAL--AETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTC---------CEEEE--EECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCC---------cEeEe--eecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 5678888888888999999999998532 11111 112378899999999999999999999999999999
Q ss_pred CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeecc
Q 000170 527 RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPL 605 (1950)
Q Consensus 527 ~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spL 605 (1950)
+++.++++. +|..+|.++.|.+. .++++..+|.|..+... . .......+.+ |.+.|.++...
T Consensus 165 ~~~~~~~~~-~~~~~v~~~~~~~~--------~l~~~~~dg~i~i~d~~---~----~~~~~~~~~~-~~~~v~~~~~~ 226 (401)
T 4aez_A 165 SQTKLRTMA-GHQARVGCLSWNRH--------VLSSGSRSGAIHHHDVR---I----ANHQIGTLQG-HSSEVCGLAWR 226 (401)
T ss_dssp TCCEEEEEC-CCSSCEEEEEEETT--------EEEEEETTSEEEEEETT---S----SSCEEEEEEC-CSSCEEEEEEC
T ss_pred CCeEEEEec-CCCCceEEEEECCC--------EEEEEcCCCCEEEEecc---c----CcceeeEEcC-CCCCeeEEEEc
Confidence 999999987 99999999999642 56666667777776642 0 1223445566 77778555443
No 37
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.27 E-value=8.7e-10 Score=129.01 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=97.6
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...+.++|++.++ .+|++|+ +|.|.+||+..+. ....+. ......|.++|++++|+|||++|++|+.||.
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG------NKSPVS-QLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTT------CCSCSE-EEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCC------ceeeee-cccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence 3556688999875 7999998 9999999985321 001111 0122358899999999999999999999999
Q ss_pred EEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 520 VTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 520 I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|++||+.+++ ....+. +|...|++++|+++ ++ .++++..+|.|..+.. .+.+....+.+ |.+
T Consensus 121 i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~-~l~~~~~dg~v~~~d~--------~~~~~~~~~~~-~~~ 184 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELT-SSAPACYALAISPD-----SK-VCFSCCSDGNIAVWDL--------HNQTLVRQFQG-HTD 184 (337)
T ss_dssp EEEEECCCC--EEEEEEE-CSSSCEEEEEECTT-----SS-EEEEEETTSCEEEEET--------TTTEEEEEECC-CSS
T ss_pred EEEEECCCCCcceeeecc-cCCCceEEEEECCC-----CC-EEEEEeCCCcEEEEeC--------CCCceeeeeec-ccC
Confidence 9999999987 445554 89999999999986 33 4444555565555443 34444555666 777
Q ss_pred cEEEeec
Q 000170 598 IVLSASP 604 (1950)
Q Consensus 598 ~Vla~sp 604 (1950)
.|.++..
T Consensus 185 ~i~~~~~ 191 (337)
T 1gxr_A 185 GASCIDI 191 (337)
T ss_dssp CEEEEEE
T ss_pred ceEEEEE
Confidence 7754444
No 38
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.27 E-value=4.9e-11 Score=143.46 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=100.0
Q ss_pred cccCC-CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 441 RRDHG-SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 441 ~~~~G-~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+...+ .+.+++.++ ++||+|+.||.|+|||...+ ...+......+|.++|++|+|||||++||+|+.|
T Consensus 12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~---------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD---------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT---------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC---------cceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 33444 678888886 79999999999999997421 1111111235689999999999999999999999
Q ss_pred CcEEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 518 GHVTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 518 G~I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
|+|++||+.++. ++.++. +|..+|++++|+++ ++.+ +++..+|.|..+..... ....+...+.+ |
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~-----~~~l-~s~s~D~~v~iwd~~~~-----~~~~~~~~~~~-h 149 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPS-----GNLL-ATCSRDKSVWVWEVDEE-----DEYECVSVLNS-H 149 (345)
T ss_dssp SCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTT-----SSEE-EEEETTSCEEEEEECTT-----SCEEEEEEECC-C
T ss_pred CcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCC-----CCEE-EEEECCCeEEEEECCCC-----CCeEEEEEecC-c
Confidence 999999998774 567775 99999999999987 3344 44444455544443100 11234566777 8
Q ss_pred cccEEEeec
Q 000170 596 TGIVLSASP 604 (1950)
Q Consensus 596 ~g~Vla~sp 604 (1950)
.+.|.++..
T Consensus 150 ~~~v~~~~~ 158 (345)
T 3fm0_A 150 TQDVKHVVW 158 (345)
T ss_dssp CSCEEEEEE
T ss_pred CCCeEEEEE
Confidence 888854443
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.26 E-value=7.8e-11 Score=141.66 Aligned_cols=116 Identities=8% Similarity=-0.009 Sum_probs=82.4
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
....+.++|+++++ ++||+|+.+|.|++||...+ ..+.. ....+|.++|++++|+|||++||+|+.||
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~-------~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~d~ 77 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN-------GWKHA---RTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT-------EEEEC---CCBCCCSSCEEEEEECTTTCCEEEEETTS
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC-------ceEEE---EEEecCCceEEEEEEeCCCCEEEEEeCCC
Confidence 33567788888885 79999999999999998421 00111 13456899999999999999999999999
Q ss_pred cEEEEECCCCc---eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRAS---AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~---~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+|++||+.+++ ....+. +|..+|++++|+++ +..+++++ .+|.|..+.
T Consensus 78 ~v~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~-----~~~l~~~~-~d~~i~iwd 128 (377)
T 3dwl_C 78 NAYVYEKRPDGTWKQTLVLL-RLNRAATFVRWSPN-----EDKFAVGS-GARVISVCY 128 (377)
T ss_dssp SEEEC------CCCCEEECC-CCSSCEEEEECCTT-----SSCCEEEE-SSSCEEECC
T ss_pred eEEEEEcCCCCceeeeeEec-ccCCceEEEEECCC-----CCEEEEEe-cCCeEEEEE
Confidence 99999999987 555554 89999999999987 33444444 445444443
No 40
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.25 E-value=4.5e-10 Score=147.94 Aligned_cols=141 Identities=14% Similarity=0.104 Sum_probs=103.8
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+..+.+.++|+++++ .+|++|+.||.|++||+..+ +... ...+|.++|++++|+|||++|++|+.|
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---------~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s~D 493 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---------VSTR---RFVGHTKDVLSVAFSLDNRQIVSASRD 493 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEE---EEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---------ccee---EEeCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 445677889999875 79999999999999998532 1121 224589999999999999999999999
Q ss_pred CcEEEEECCCCceeeeec--cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 518 GHVTVWDVQRASAAKVIT--GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~--~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
|+|++||+.......... .+|...|.+++|++++ .+..++++..+|.| ++|+..+.+....+.| |
T Consensus 494 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~d~~v--------~vwd~~~~~~~~~~~~-h 560 (694)
T 3dm0_A 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT----LQPTIVSASWDKTV--------KVWNLSNCKLRSTLAG-H 560 (694)
T ss_dssp SCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS----SSCEEEEEETTSCE--------EEEETTTCCEEEEECC-C
T ss_pred CEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC----CcceEEEEeCCCeE--------EEEECCCCcEEEEEcC-C
Confidence 999999987554332221 3789999999999872 33455566555544 4555445566677888 9
Q ss_pred cccEEEeecc
Q 000170 596 TGIVLSASPL 605 (1950)
Q Consensus 596 ~g~Vla~spL 605 (1950)
.+.|.+++..
T Consensus 561 ~~~v~~v~~s 570 (694)
T 3dm0_A 561 TGYVSTVAVS 570 (694)
T ss_dssp SSCEEEEEEC
T ss_pred CCCEEEEEEe
Confidence 8888555443
No 41
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.25 E-value=1.5e-09 Score=127.60 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=91.1
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+....+.+++++.++ ++||+|+.+|.|++||++.+ +.+. ....|.+.|++++|+|+|.+|++|+.|
T Consensus 61 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---------~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---------KCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFD 128 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEE---EEECCSSCEEEEEECSSSSEEEEEETT
T ss_pred hccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---------cEEE---EEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 344566789999875 79999999999999998531 1111 223588999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|.|++||+.++++++.+. +|..+|.+++|+++ +. .++++..+|.|..+.
T Consensus 129 ~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-----~~-~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 129 ESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRD-----GS-LIVSSSYDGLCRIWD 177 (312)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECTT-----SS-EEEEEETTSCEEEEE
T ss_pred CcEEEEECCCCEEEEEec-CCCCcEEEEEEcCC-----CC-EEEEEeCCCcEEEEE
Confidence 999999999999998886 89999999999986 33 444555555554444
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.25 E-value=1.3e-09 Score=127.51 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=90.2
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...+.+++++.++ ++|++|+.+|.|.+||...+ ...... ....|.++|++++|+|+|.+|++|+.||.
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-------~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP-------TPRIKA---ELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------EEEE---EEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC-------Ccceee---ecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 3456688999885 79999999999999998531 111111 22347889999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|++||+.+++.+..+. +|..+|.+++|+++ ++. ++++..+|.|..+..
T Consensus 165 v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~-----~~~-l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 165 IAVWDLHNQTLVRQFQ-GHTDGASCIDISND-----GTK-LWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEEEETTTTEEEEEEC-CCSSCEEEEEECTT-----SSE-EEEEETTSEEEEEET
T ss_pred EEEEeCCCCceeeeee-cccCceEEEEECCC-----CCE-EEEEecCCcEEEEEC
Confidence 9999999999998886 89999999999986 334 444445565555553
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.24 E-value=6.4e-11 Score=143.39 Aligned_cols=136 Identities=17% Similarity=0.117 Sum_probs=100.5
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCC
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADG 518 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG 518 (1950)
.+.+.++|+++++ ++||+|+.||+|++||+..+ +.+. ...+|.++|++++|++++. +|++|+.||
T Consensus 125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---------~~~~---~~~~h~~~V~~~~~~~~~~~~l~s~s~D~ 192 (344)
T 4gqb_B 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---------VVLS---SYRAHAAQVTCVAASPHKDSVFLSCSEDN 192 (344)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEE---EECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------cEEE---EEcCcCCceEEEEecCCCCCceeeecccc
Confidence 3567789999875 79999999999999998531 2221 3356999999999999985 789999999
Q ss_pred cEEEEECCCCceeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 519 HVTVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
+|++||+.++++...+.. .|...|++++|.+++ ++ +++++..+|.| ++|+..+.++...|.| |.+
T Consensus 193 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~-~l~sg~~dg~v--------~~wd~~~~~~~~~~~~-h~~ 258 (344)
T 4gqb_B 193 RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQ----SE-VFVFGDENGTV--------SLVDTKSTSCVLSSAV-HSQ 258 (344)
T ss_dssp CEEEEETTSSSCEEECC----CCCEEEEEECSSC----TT-EEEEEETTSEE--------EEEESCC--CCEEEEC-CSS
T ss_pred ccccccccccceeeeeecceeeccceeeeecCCC----Cc-ceEEeccCCcE--------EEEECCCCcEEEEEcC-CCC
Confidence 999999999998887742 556789999999863 33 45555555544 4555555666666778 888
Q ss_pred cEEEee
Q 000170 598 IVLSAS 603 (1950)
Q Consensus 598 ~Vla~s 603 (1950)
.|.+++
T Consensus 259 ~v~~v~ 264 (344)
T 4gqb_B 259 CVTGLV 264 (344)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 884443
No 44
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.24 E-value=6.5e-10 Score=144.49 Aligned_cols=116 Identities=14% Similarity=0.193 Sum_probs=91.6
Q ss_pred cccccCCCcEEEEEcCC---EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHPS---FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~---~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.+..+.+.++++++++. .||+|+.||+|++||... .++.. ...+|.++|++++|||||++||+|+
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~---------~~~~~---~l~~H~~~V~~v~fspdg~~las~s 209 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---------FKFKS---TFGEHTKFVHSVRYNPDGSLFASTG 209 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT---------BEEEE---EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC---------CeEee---eeccccCceEEEEECCCCCEEEEEE
Confidence 45567788999999873 699999999999999742 12211 3356999999999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecc------CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 516 ADGHVTVWDVQRASAAKVITG------EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~------~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.||+|+|||+.+|+++.++.. +|..+|++++|+++ +..++.++ .+|.|.++
T Consensus 210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-----g~~l~s~s-~D~~v~lW 266 (611)
T 1nr0_A 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-----GTKIASAS-ADKTIKIW 266 (611)
T ss_dssp TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-----SSEEEEEE-TTSEEEEE
T ss_pred CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-----CCEEEEEe-CCCeEEEE
Confidence 999999999999999888854 79999999999997 34444444 44444333
No 45
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.24 E-value=5.4e-10 Score=145.23 Aligned_cols=139 Identities=16% Similarity=0.224 Sum_probs=101.7
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.+..+.+.++|+++++ ++||+|+.||+|+|||...+ . ..... ....|.++|++|+|||||++||+++.
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~------~-~~~~~---~~~~~~~~v~~v~fs~dg~~l~~~~~ 123 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT------T-HILKT---TIPVFSGPVKDISWDSESKRIAAVGE 123 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST------T-CCEEE---EEECSSSCEEEEEECTTSCEEEEEEC
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC------c-ceeeE---eecccCCceEEEEECCCCCEEEEEEC
Confidence 3556677899999986 79999999999999998421 1 11111 22458899999999999999999886
Q ss_pred C----CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecC
Q 000170 517 D----GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLD 592 (1950)
Q Consensus 517 d----G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~ 592 (1950)
+ |+|++|| ++++..++. +|..+|++++|+|+ +...++++..+|. +++|+..+.++...|.
T Consensus 124 ~~~~~~~v~~wd--~~~~~~~l~-gh~~~v~~v~f~p~-----~~~~l~s~s~D~~--------v~lwd~~~~~~~~~l~ 187 (611)
T 1nr0_A 124 GRERFGHVFLFD--TGTSNGNLT-GQARAMNSVDFKPS-----RPFRIISGSDDNT--------VAIFEGPPFKFKSTFG 187 (611)
T ss_dssp CSSCSEEEEETT--TCCBCBCCC-CCSSCEEEEEECSS-----SSCEEEEEETTSC--------EEEEETTTBEEEEEEC
T ss_pred CCCceeEEEEee--CCCCcceec-CCCCCceEEEECCC-----CCeEEEEEeCCCe--------EEEEECCCCeEeeeec
Confidence 5 5788888 466777776 99999999999997 3333444444443 4556555566677888
Q ss_pred CCccccEEEeec
Q 000170 593 GQKTGIVLSASP 604 (1950)
Q Consensus 593 g~~~g~Vla~sp 604 (1950)
| |.+.|.+++-
T Consensus 188 ~-H~~~V~~v~f 198 (611)
T 1nr0_A 188 E-HTKFVHSVRY 198 (611)
T ss_dssp C-CSSCEEEEEE
T ss_pred c-ccCceEEEEE
Confidence 8 9998854443
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.24 E-value=4.8e-10 Score=135.47 Aligned_cols=118 Identities=14% Similarity=0.260 Sum_probs=85.7
Q ss_pred cCCCcEEEEEcC--C-EEEEEeCCCcEEEEeC----CCCCCccCccc---c-eeeeecccCC------CCCCCeEEEEEc
Q 000170 443 DHGSPQVLAVHP--S-FIAVGMSKGAIVVVPG----KYSAHHRDSMD---S-KMMMLGLLGD------RSPAPVTAMCFN 505 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~-~IAvGts~G~I~vfd~----k~~~~~~d~~~---~-k~~~l~~~~~------~h~~~VtsLafS 505 (1950)
..+.++|+++++ . +||+|+.+|.|.+||+ ..+ .. . ....+..+.. +|.++|++++|+
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 117 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEG------KKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS 117 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------------CEEEEEEEEEECCCCCC------CBCEEEEEEC
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCc------cccccccccccccccccccccccCCCCceEEEEEc
Confidence 457889999986 5 9999999999999998 432 10 0 0111111222 257799999999
Q ss_pred CCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 506 QPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 506 ~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|||++||+|+.||.|++|| .+++.+..+. +|..+|++++|+++ +. .++++..+|.|..+..
T Consensus 118 ~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~-----~~-~l~~~~~d~~i~iwd~ 178 (425)
T 1r5m_A 118 HDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKD-----GT-HIISMDVENVTILWNV 178 (425)
T ss_dssp TTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTT-----SS-EEEEEETTCCEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCC-----CC-EEEEEecCCeEEEEEC
Confidence 9999999999999999999 7788888886 89999999999987 33 3445555565555443
No 47
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.5e-09 Score=125.77 Aligned_cols=236 Identities=11% Similarity=0.104 Sum_probs=145.8
Q ss_pred cccccCCCcEEEEE-cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 439 AFRRDHGSPQVLAV-HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~-s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
.++.+.+.++|++. ++.+||+|+.+|.|++||...+ +... ....|.++|++++|+|||++|++|+.|
T Consensus 13 ~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~---------~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ---------WLGT---VVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp EECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSS---------EEEE---EEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred HhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCC---------EEEE---EeecCCccEEEEEECCCCCEEEEecCC
Confidence 34567788899886 3589999999999999998431 1111 112478899999999999999999999
Q ss_pred CcEEEEECCCC---ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 518 GHVTVWDVQRA---SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 518 G~I~lWDl~~g---~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
|.|++||+.+. +....+. +|..+|+++.|.+ . .++++..+|.|..+. ..+....+.+
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~-------~-~l~~~~~d~~i~~~d----------~~~~~~~~~~- 140 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLI-GHQGNVCSLSFQD-------G-VVISGSWDKTAKVWK----------EGSLVYNLQA- 140 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEEET-------T-EEEEEETTSEEEEEE----------TTEEEEEEEC-
T ss_pred CeEEEEEeeecCCCCcccchh-hcccCEEEEEecC-------C-EEEEEeCCCCEEEEc----------CCcEEEeccc-
Confidence 99999999765 4556665 8999999999953 2 445555555554443 2223344445
Q ss_pred ccccEEEeecccccccCCCCCCCCCCCCcccccccccccccccccCCcccccccCCCcccccEEEEEec-cEEEEEEecc
Q 000170 595 KTGIVLSASPLLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTY-QTALVVRLTP 673 (1950)
Q Consensus 595 ~~g~Vla~spLp~~~~~gs~~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~T~-~~~~IV~l~P 673 (1950)
|.+.|.++...|.+ ++ .++.++. ..+.+.....
T Consensus 141 ~~~~v~~~~~~~~~-----------~~-----------------------------------~l~~~~~d~~i~i~d~~~ 174 (313)
T 3odt_A 141 HNASVWDAKVVSFS-----------EN-----------------------------------KFLTASADKTIKLWQNDK 174 (313)
T ss_dssp CSSCEEEEEEEETT-----------TT-----------------------------------EEEEEETTSCEEEEETTE
T ss_pred CCCceeEEEEccCC-----------CC-----------------------------------EEEEEECCCCEEEEecCc
Confidence 66677555444310 11 0111111 1112222111
Q ss_pred CceeeeeccCCCCCCCCCCCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeecceeEeeEEe-ccccc
Q 000170 674 TLEVYAQIPRPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKSELKVYGKWS-LDSAA 752 (1950)
Q Consensus 674 ~~~v~~k~~rP~~v~~~slp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~~~~~~~~~~-~~~~I 752 (1950)
..+. +..+ ..+.+.+++|... . .+++.+.+..|.++++... .....+. -...|
T Consensus 175 ~~~~---~~~~---~~~~i~~~~~~~~-----------------~-~~~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~i 228 (313)
T 3odt_A 175 VIKT---FSGI---HNDVVRHLAVVDD-----------------G-HFISCSNDGLIKLVDMHTG--DVLRTYEGHESFV 228 (313)
T ss_dssp EEEE---ECSS---CSSCEEEEEEEET-----------------T-EEEEEETTSEEEEEETTTC--CEEEEEECCSSCE
T ss_pred eEEE---Eecc---CcccEEEEEEcCC-----------------C-eEEEccCCCeEEEEECCch--hhhhhhhcCCceE
Confidence 1111 1111 1123445566441 1 2566677788888876322 2334444 35679
Q ss_pred eeeeeccCCeEEEEeecCeEEEEecC
Q 000170 753 IGVAWLDDQMLVVLTLLGQLYLYARD 778 (1950)
Q Consensus 753 ~~l~WLs~~iL~vLt~s~~L~l~d~~ 778 (1950)
.++.|-.+..+++-..++.+.++|..
T Consensus 229 ~~~~~~~~~~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 229 YCIKLLPNGDIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp EEEEECTTSCEEEEETTSEEEEECTT
T ss_pred EEEEEecCCCEEEEecCCEEEEEECC
Confidence 99999988777777888899999964
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.3e-09 Score=131.60 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=85.3
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.+.++|+++++ ++||+|+.+|.|.+||... +.+. ....|.++|++++|+|||++|++|+.||.|+
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~----------~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG----------ALLN---VLNFHRAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS----------CEEE---EECCCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------Ceee---eccCCCccEEEEEECCCCCEEEEEecCCeEE
Confidence 44789999985 7999999999999999421 1111 2245889999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCC---------------eEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 522 VWDVQRASAAKVITGEHTSP---------------VVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~---------------I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+||+.+++.+..+. .|... |.+++|.++ + .++++..+|.|+.+...
T Consensus 175 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~g~i~~~d~~ 235 (425)
T 1r5m_A 175 LWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVDD-----D--KFVIPGPKGAIFVYQIT 235 (425)
T ss_dssp EEETTTTEEEEEEC-CC---------------CCCBSCCEEEET-----T--EEEEECGGGCEEEEETT
T ss_pred EEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcCC-----C--EEEEEcCCCeEEEEEcC
Confidence 99999999888775 55554 888888875 1 35555566777777654
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.23 E-value=1.8e-10 Score=140.49 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=100.6
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.++.+.|.++|+++++ .+||+|+.||+|++||...+ +... ....|..+|++++|+|||++||+|+.
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~---------~~~~---~~~~h~~~v~~~~~s~~g~~las~~~ 128 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS---------QKTH---AIKLHCPWVMECAFAPNGQSVACGGL 128 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---------EEEE---EEECCCTTCCCCEECTTSSEEEECCS
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------ccce---EEecCCCCEEEEEECCCCCEEEEeeC
Confidence 3556778899999986 79999999999999998431 1111 22358889999999999999999999
Q ss_pred CCcEEEEECCCCc-------eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEe
Q 000170 517 DGHVTVWDVQRAS-------AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQC 589 (1950)
Q Consensus 517 dG~I~lWDl~~g~-------~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ 589 (1950)
||.|++||+.++. ..+++. +|...|.++.|.+++ ...++++..+|. +++|+..+.+...
T Consensus 129 d~~v~iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~-----~~~l~s~s~D~~--------i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 129 DSACSIFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQ-----ETRLITGSGDQT--------CVLWDVTTGQRIS 194 (380)
T ss_dssp SSCCEEEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSS-----SSCEEEECTTSC--------EEEECTTTCCEEE
T ss_pred CCcEEEEECCCCccccCCccceeecc-CCCcceEEEEEecCC-----CCEEEEECCCCc--------EEEEEcCCCcEEE
Confidence 9999999997643 334554 999999999999862 334555555553 4556554554444
Q ss_pred ec-----CCCccccEEEeec
Q 000170 590 LL-----DGQKTGIVLSASP 604 (1950)
Q Consensus 590 ll-----~g~~~g~Vla~sp 604 (1950)
++ .| |.+.|.+++.
T Consensus 195 ~~~~~~~~~-h~~~v~~~~~ 213 (380)
T 3iz6_a 195 IFGSEFPSG-HTADVLSLSI 213 (380)
T ss_dssp EECCCSSSS-CCSCEEEEEE
T ss_pred EeecccCCC-CccCeEEEEe
Confidence 44 44 6666655544
No 50
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.22 E-value=1.2e-10 Score=136.79 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=89.2
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEEec
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~LasG~ 515 (1950)
+..+.+.++++++++ ++||+|+.||.|+|||.... ..+.+. +..+|.++|++|+|+++ |++||+|+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~-------~~~~~~---~l~gH~~~V~~v~~s~~~~g~~l~s~s 74 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE-------THKLID---TLTGHEGPVWRVDWAHPKFGTILASCS 74 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS-------CBCCCE---EECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC-------CcEEEE---EEccccCCeEEEEecCCCcCCEEEEEc
Confidence 345667789999874 89999999999999998421 111111 33569999999999874 99999999
Q ss_pred CCCcEEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 516 ADGHVTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.||+|++||+.+++ .+.++. +|..+|.+++|.++. .+ ..++++..+|.|..+.+
T Consensus 75 ~D~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~---~g-~~l~s~s~d~~v~~wd~ 130 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHE---YG-PMLLVASSDGKVSVVEF 130 (297)
T ss_dssp TTTEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGG---GC-SEEEEEETTSEEEEEEB
T ss_pred CCCEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCC---CC-cEEEEEECCCcEEEEEe
Confidence 99999999999885 455554 899999999999851 12 24445555566655543
No 51
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.22 E-value=4.8e-10 Score=152.68 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=101.2
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCc--------cC------------cccc------------e--ee
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHH--------RD------------SMDS------------K--MM 486 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~--------~d------------~~~~------------k--~~ 486 (1950)
..+.++++++++ .+||+|+.||+|+|||+..+... .+ ..+. + -.
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 456789999985 89999999999999998532000 00 0000 0 00
Q ss_pred eecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeee--e--c-cCcCCCeEEEEEe-----cCCCccCC
Q 000170 487 MLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKV--I--T-GEHTSPVVHTLFL-----GQDSQVTR 556 (1950)
Q Consensus 487 ~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~t--l--~-~~H~~~I~~v~F~-----~d~~~~~~ 556 (1950)
++ ....+|.++|++|+||||| +||+|+.||+|+|||+.++.++.. + . .+|+..|++|+|+ +|++ .+
T Consensus 567 ~~-~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~--~~ 642 (902)
T 2oaj_A 567 PS-TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGY--SS 642 (902)
T ss_dssp EE-EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSS--EE
T ss_pred ee-EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCC--cc
Confidence 11 1235599999999999999 999999999999999998876542 2 1 3899999999999 8742 13
Q ss_pred ceEEEEecCCceEEEEcccccccccc---eeeeEEeecCC----CccccEEEeeccc
Q 000170 557 QFKAVTGDTKGLVQLHSLSVVPLLNR---FSIKTQCLLDG----QKTGIVLSASPLL 606 (1950)
Q Consensus 557 ~~~~vssD~~G~V~~h~ft~~rl~~~---~t~~s~~ll~g----~~~g~Vla~spLp 606 (1950)
..+++++++ |.| ++|+. -++++...|.| ++.++|++++|+-
T Consensus 643 ~~l~sgs~D-~tv--------~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~ 690 (902)
T 2oaj_A 643 ILMVCGTDM-GEV--------ITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFS 690 (902)
T ss_dssp EEEEEEETT-SEE--------EEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEE
T ss_pred eEEEEEecC-CcE--------EEEEEecCCCCcEEEEecCceecCCCCceEEEEeEe
Confidence 455555554 444 44443 23444555555 1347787777653
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.21 E-value=7.1e-10 Score=131.38 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=101.3
Q ss_pred cCCCcEEEEEcC------CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC----CCEEE
Q 000170 443 DHGSPQVLAVHP------SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP----GDLLL 512 (1950)
Q Consensus 443 ~~G~pt~ia~s~------~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D----G~~La 512 (1950)
+.+.++|+++++ ..+++++.+|.|.+||...+ ..... ........|.+.|++++|+++ |.+||
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------GEIRL-LQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------GCEEE-EEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------cEEEe-eeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 567789999984 46777778889999998532 11111 111223347789999999999 77999
Q ss_pred EecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeec-
Q 000170 513 AGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLL- 591 (1950)
Q Consensus 513 sG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll- 591 (1950)
+|+.||.|++||+.+++++..+. +|..+|++++|++++ ++ .++++..+|.|..+. ..+.+....+
T Consensus 90 ~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~----~~-~l~s~~~dg~i~iwd--------~~~~~~~~~~~ 155 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD----PN-LLLSVSKDHALRLWN--------IQTDTLVAIFG 155 (366)
T ss_dssp EEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSC----TT-EEEEEETTSCEEEEE--------TTTTEEEEEEC
T ss_pred EecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCC----CC-EEEEEeCCCeEEEEE--------eecCeEEEEec
Confidence 99999999999999999998886 899999999999831 33 455555555555444 3344444444
Q ss_pred --CCCccccEEEeeccc
Q 000170 592 --DGQKTGIVLSASPLL 606 (1950)
Q Consensus 592 --~g~~~g~Vla~spLp 606 (1950)
.+ |.+.|.++...|
T Consensus 156 ~~~~-~~~~v~~~~~~~ 171 (366)
T 3k26_A 156 GVEG-HRDEVLSADYDL 171 (366)
T ss_dssp STTS-CSSCEEEEEECT
T ss_pred cccc-ccCceeEEEECC
Confidence 45 777775555433
No 53
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.21 E-value=1.4e-09 Score=138.89 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=97.7
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCC-eEEEEEcC--CCCEEEEecC
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAP-VTAMCFNQ--PGDLLLAGYA 516 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~-VtsLafS~--DG~~LasG~~ 516 (1950)
...|.++|+++++ ++||+|+ +|.|.+||...+. ...+... ...+|.++ |++++|+| ||++||+|+.
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~-----~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~~l~s~~~ 86 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGD-----SKVPPVV---QFTGHGSSVVTTVKFSPIKGSQYLCSGDE 86 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSC-----CSSCSEE---EECTTTTSCEEEEEECSSTTCCEEEEEET
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCC-----Cccccce---EEecCCCceEEEEEECcCCCCCEEEEecC
Confidence 4567888888876 7999998 8899999985310 0001111 22458899 99999999 9999999999
Q ss_pred CCcEEEEECCCC--------ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC---ceEEEEcccccccccceee
Q 000170 517 DGHVTVWDVQRA--------SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK---GLVQLHSLSVVPLLNRFSI 585 (1950)
Q Consensus 517 dG~I~lWDl~~g--------~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~---G~V~~h~ft~~rl~~~~t~ 585 (1950)
||+|++||+.++ +..+.+. +|..+|.+++|+++ ++.+++++++. |.|+. |+ +.
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-----~~~l~~~~~~~~~~~~v~~--------~d--~~ 150 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFE-----GRRLCVVGEGRDNFGVFIS--------WD--SG 150 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTT-----SSEEEEEECCSSCSEEEEE--------TT--TC
T ss_pred CCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCC-----CCEEEEeccCCCCccEEEE--------EE--CC
Confidence 999999999865 5666775 89999999999997 45566666553 54444 44 23
Q ss_pred eEEeecCCCccccEEEee
Q 000170 586 KTQCLLDGQKTGIVLSAS 603 (1950)
Q Consensus 586 ~s~~ll~g~~~g~Vla~s 603 (1950)
+....+.+ |.+.|.++.
T Consensus 151 ~~~~~~~~-~~~~v~~~~ 167 (615)
T 1pgu_A 151 NSLGEVSG-HSQRINACH 167 (615)
T ss_dssp CEEEECCS-CSSCEEEEE
T ss_pred Ccceeeec-CCccEEEEE
Confidence 34455666 777774333
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.21 E-value=7.7e-10 Score=133.52 Aligned_cols=124 Identities=11% Similarity=0.037 Sum_probs=92.6
Q ss_pred cccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC----C---CEE
Q 000170 439 AFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP----G---DLL 511 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D----G---~~L 511 (1950)
.++...+.++|+++++++||+|+.+|.|++||...+... ....... ....|.++|++++|+++ | .+|
T Consensus 11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~---~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE---NPKDKSY---SHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC---CGGGGEE---EEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc---cCCCcce---EEecCCCcEEEEEEecccccCCccccEE
Confidence 345677889999999999999999999999998532100 0000111 12358899999999999 9 999
Q ss_pred EEecCCCcEEEEECCCCce-----eeeeccCc-----CCCeEEEEEe----cCCCccCCceEEEEecCCceEEEEcc
Q 000170 512 LAGYADGHVTVWDVQRASA-----AKVITGEH-----TSPVVHTLFL----GQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 512 asG~~dG~I~lWDl~~g~~-----l~tl~~~H-----~~~I~~v~F~----~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
++|+.||.|++||+.+++. .+.+. +| ...|++++|+ ++ +...++++..+|.|..+..
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~-----~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRL-----LSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC---------CEEEEEEETTSCEEEEEE
T ss_pred EEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCC-----CceEEEEEeCCCcEEEEeC
Confidence 9999999999999999987 77776 77 5999999999 76 3442555556666666554
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.21 E-value=2.4e-10 Score=137.41 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=85.8
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.++...+.++++++++ ++||+|+.||.|++||+..+ ...+... ....|.++|++++|+|||++|++|+.
T Consensus 50 ~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~ 120 (377)
T 3dwl_C 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD------GTWKQTL---VLLRLNRAATFVRWSPNEDKFAVGSG 120 (377)
T ss_dssp CBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------------CCCCEE---ECCCCSSCEEEEECCTTSSCCEEEES
T ss_pred EEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC------Cceeeee---EecccCCceEEEEECCCCCEEEEEec
Confidence 3445677899999986 79999999999999998532 1011111 23458899999999999999999999
Q ss_pred CCcEEEEECCCCc---eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 517 DGHVTVWDVQRAS---AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 517 dG~I~lWDl~~g~---~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
||.|++||+.+++ +.+.+...|...|++++|+++ ++.+ +++..+|.|..+..
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l-~~~~~d~~i~iwd~ 175 (377)
T 3dwl_C 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN-----NVLL-AAGCADRKAYVLSA 175 (377)
T ss_dssp SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT-----SSEE-EEEESSSCEEEEEE
T ss_pred CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC-----CCEE-EEEeCCCEEEEEEE
Confidence 9999999999987 477787459999999999987 3344 44444465555553
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.21 E-value=1.4e-09 Score=128.82 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=89.4
Q ss_pred cCCCcEEEEEcCC------EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEec
Q 000170 443 DHGSPQVLAVHPS------FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGY 515 (1950)
Q Consensus 443 ~~G~pt~ia~s~~------~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~ 515 (1950)
..+.+++++.++. +||+|+.+|.|.+||...+ +.+. ....|.++|++|+|+| ++.+|++|+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~~~---~~~~~~~~i~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---------QCIK---HYVGHGNAINELKFHPRDPNLLLSVS 135 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---------CEEE---EEESCCSCEEEEEECSSCTTEEEEEE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---------eEee---eecCCCCcEEEEEECCCCCCEEEEEe
Confidence 3467899888865 8999999999999998531 1111 1235889999999999 999999999
Q ss_pred CCCcEEEEECCCCceeeeec--cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 516 ADGHVTVWDVQRASAAKVIT--GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~--~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.||.|++||+.+++.+..+. .+|...|++++|+++ ++. ++++..+|.|..+..
T Consensus 136 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~-l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 136 KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL-----GEK-IMSCGMDHSLKLWRI 190 (366)
T ss_dssp TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT-----SSE-EEEEETTSCEEEEES
T ss_pred CCCeEEEEEeecCeEEEEecccccccCceeEEEECCC-----CCE-EEEecCCCCEEEEEC
Confidence 99999999999999988873 389999999999986 334 444445565555553
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.20 E-value=1.1e-09 Score=132.46 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=101.7
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.++.+.+.++|+++++ .+||+|+.||+|++||...+ +... ....|...|.+++|+|||.+||+|+.
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~---------~~~~---~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT---------NKEH---AVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEE---EEECSSSCCCEEEECTTSSEEEEEST
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------Ccce---EEecCCCCEEEEEECCCCCEEEEeeC
Confidence 4556778899999986 79999999999999997431 1111 11236789999999999999999999
Q ss_pred CCcEEEEECCCC------ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEee
Q 000170 517 DGHVTVWDVQRA------SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCL 590 (1950)
Q Consensus 517 dG~I~lWDl~~g------~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~l 590 (1950)
||.|++|++..+ ...+.+. +|...|..++|+++ +..++ ++..+|. +++|+..+.+....
T Consensus 127 d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~-----~~~l~-t~s~D~~--------v~lwd~~~~~~~~~ 191 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNS-----DMQIL-TASGDGT--------CALWDVESGQLLQS 191 (354)
T ss_dssp TSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSS-----SSEEE-EEETTSE--------EEEEETTTCCEEEE
T ss_pred CCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCC-----CCEEE-EEeCCCc--------EEEEeCCCCeEEEE
Confidence 999999999754 2344554 89999999999987 23344 4444443 45666556666677
Q ss_pred cCCCccccEEEeec
Q 000170 591 LDGQKTGIVLSASP 604 (1950)
Q Consensus 591 l~g~~~g~Vla~sp 604 (1950)
+.| |.+.|.++..
T Consensus 192 ~~~-h~~~v~~~~~ 204 (354)
T 2pbi_B 192 FHG-HGADVLCLDL 204 (354)
T ss_dssp EEC-CSSCEEEEEE
T ss_pred EcC-CCCCeEEEEE
Confidence 778 8887754433
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.20 E-value=2.4e-09 Score=129.34 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=89.4
Q ss_pred cCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
..+.+++++.++ .+|++|+.+|.|++||++. .... .+. ....+.++|++++|+|||.+|++|+.||.
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~--~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 186 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-------SVIQ--VFA-KTDSWDYWYCCVDVSVSRQMLATGDSTGR 186 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-------CEEE--EEE-CCCCSSCCEEEEEEETTTTEEEEEETTSE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-------CceE--EEe-ccCCCCCCeEEEEECCCCCEEEEECCCCC
Confidence 567789999976 6899999999999999852 1111 111 23446689999999999999999999999
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|++||+ +++.+.++. +|...|.+++|+++ +...++++..+|.|..+..
T Consensus 187 i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 187 LLLLGL-DGHEIFKEK-LHKAKVTHAEFNPR-----CDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp EEEEET-TSCEEEEEE-CSSSCEEEEEECSS-----CTTEEEEEETTSEEEEEEG
T ss_pred EEEEEC-CCCEEEEec-cCCCcEEEEEECCC-----CCCEEEEEeCCCEEEEEeC
Confidence 999999 678888886 89999999999987 3335555555565555543
No 59
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.19 E-value=3.2e-09 Score=131.51 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=99.4
Q ss_pred cCCC-cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 443 DHGS-PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 443 ~~G~-pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
+.+. ++|+++++++||+|+.+|.|++||...+ +.+. ...+|.++|++++|+ +.+|++|+.||+|+
T Consensus 117 h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~---------~~~~---~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~ 182 (445)
T 2ovr_B 117 HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTG---------KCLR---TLVGHTGGVWSSQMR--DNIIISGSTDRTLK 182 (445)
T ss_dssp STTSCEEEEEEETTEEEEEETTSCEEEEETTTC---------CEEE---ECCCCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred cCCCcEEEEEEcCCEEEEEECCCcEEEEECCCC---------cEEE---EEcCCCCCEEEEEec--CCEEEEEeCCCeEE
Confidence 4444 4899999999999999999999998532 2221 345689999999997 77999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEE
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLS 601 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla 601 (1950)
+||+.+++++.++. +|..+|.++.|.++ .++++..+|.|..+. ..+.+....+.+ |.+.|.+
T Consensus 183 vwd~~~~~~~~~~~-~h~~~v~~~~~~~~--------~l~s~s~dg~i~~wd--------~~~~~~~~~~~~-~~~~v~~ 244 (445)
T 2ovr_B 183 VWNAETGECIHTLY-GHTSTVRCMHLHEK--------RVVSGSRDATLRVWD--------IETGQCLHVLMG-HVAAVRC 244 (445)
T ss_dssp EEETTTTEEEEEEC-CCSSCEEEEEEETT--------EEEEEETTSEEEEEE--------SSSCCEEEEEEC-CSSCEEE
T ss_pred EEECCcCcEEEEEC-CCCCcEEEEEecCC--------EEEEEeCCCEEEEEE--------CCCCcEEEEEcC-CcccEEE
Confidence 99999999999987 99999999999753 355555556555444 334555556666 7777765
Q ss_pred eec
Q 000170 602 ASP 604 (1950)
Q Consensus 602 ~sp 604 (1950)
++.
T Consensus 245 ~~~ 247 (445)
T 2ovr_B 245 VQY 247 (445)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 60
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.19 E-value=3.4e-09 Score=131.26 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=101.6
Q ss_pred cccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 439 AFRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
.+....+.++|++++++++++|+.+|.|++||...+ +.+. ...+|.++|++++| ++.+|++|+.||
T Consensus 154 ~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~---------~~~~---~~~~h~~~v~~~~~--~~~~l~s~s~dg 219 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG---------ECIH---TLYGHTSTVRCMHL--HEKRVVSGSRDA 219 (445)
T ss_dssp ECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------EEEE---EECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred EEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC---------cEEE---EECCCCCcEEEEEe--cCCEEEEEeCCC
Confidence 345577889999999999999999999999998531 2221 23468899999999 478899999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcccc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGI 598 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~ 598 (1950)
+|++||+.+++++.++. +|..+|+++.|.+ ..++ ++..+|.|. +|+..+.+....+.+ |.+.
T Consensus 220 ~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~-------~~l~-~~~~dg~i~--------iwd~~~~~~~~~~~~-~~~~ 281 (445)
T 2ovr_B 220 TLRVWDIETGQCLHVLM-GHVAAVRCVQYDG-------RRVV-SGAYDFMVK--------VWDPETETCLHTLQG-HTNR 281 (445)
T ss_dssp EEEEEESSSCCEEEEEE-CCSSCEEEEEECS-------SCEE-EEETTSCEE--------EEEGGGTEEEEEECC-CSSC
T ss_pred EEEEEECCCCcEEEEEc-CCcccEEEEEECC-------CEEE-EEcCCCEEE--------EEECCCCcEeEEecC-CCCc
Confidence 99999999999998886 8999999999943 2344 444455444 444444555566667 7777
Q ss_pred EEEeec
Q 000170 599 VLSASP 604 (1950)
Q Consensus 599 Vla~sp 604 (1950)
|.++..
T Consensus 282 v~~~~~ 287 (445)
T 2ovr_B 282 VYSLQF 287 (445)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 766554
No 61
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.19 E-value=1.7e-10 Score=139.95 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=103.3
Q ss_pred ccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEec
Q 000170 440 FRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~ 515 (1950)
++...+.++|+++++ .++++|+.||.|++||.+.+ +... ......+.+.|++++|+|+ +.+||+|+
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~---------~~~~-~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP---------KPAT-RIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS---------SCBC-BCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC---------ceee-eeeeccccccccchhhhhcccceEEEee
Confidence 445677889999875 47999999999999998642 1111 1123457788999999998 56899999
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCc
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQK 595 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~ 595 (1950)
.||.|++||+.++++++++. +|..+|++++|++++ ++.++.+++ +|. +++|+..+.+...++ | |
T Consensus 247 ~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~~----~~~lasgs~-D~~--------i~iwd~~~~~~~~~~-~-H 310 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYHS----SPFLASISE-DCT--------VAVLDADFSEVFRDL-S-H 310 (357)
T ss_dssp SSSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSSS----SCCEEEEET-TSC--------EEEECTTSCEEEEEC-C-C
T ss_pred cccceeEEECCCCcEeEEEe-ccceeEEEEEEcCCC----CCEEEEEeC-CCE--------EEEEECCCCcEeEEC-C-C
Confidence 99999999999999999997 999999999999873 344444444 443 456665555555555 5 8
Q ss_pred cccEE--Eeec
Q 000170 596 TGIVL--SASP 604 (1950)
Q Consensus 596 ~g~Vl--a~sp 604 (1950)
.+.|. +|+|
T Consensus 311 ~~~V~~vafsP 321 (357)
T 4g56_B 311 RDFVTGVAWSP 321 (357)
T ss_dssp SSCEEEEEECS
T ss_pred CCCEEEEEEeC
Confidence 88884 4554
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.19 E-value=3.8e-09 Score=129.26 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=94.4
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..+.++|++.++ .+||+|+.+|.|.+||...+ +.+. ....|.++|++++| ++.+|++|+.||.|
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~---~~~~~~~~v~~~~~--~~~~l~~~~~dg~i 198 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---------TKLR---TMAGHQARVGCLSW--NRHVLSSGSRSGAI 198 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEE---EECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---------eEEE---EecCCCCceEEEEE--CCCEEEEEcCCCCE
Confidence 456689999975 79999999999999998431 1121 22468999999999 67899999999999
Q ss_pred EEEECCC-CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE
Q 000170 521 TVWDVQR-ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV 599 (1950)
Q Consensus 521 ~lWDl~~-g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V 599 (1950)
++||+.. +.....+. +|...|++++|+++ +..++ ++..+|.|.. |+..+.+....+.+ |.+.|
T Consensus 199 ~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~-----~~~l~-s~~~d~~v~i--------wd~~~~~~~~~~~~-~~~~v 262 (401)
T 4aez_A 199 HHHDVRIANHQIGTLQ-GHSSEVCGLAWRSD-----GLQLA-SGGNDNVVQI--------WDARSSIPKFTKTN-HNAAV 262 (401)
T ss_dssp EEEETTSSSCEEEEEE-CCSSCEEEEEECTT-----SSEEE-EEETTSCEEE--------EETTCSSEEEEECC-CSSCC
T ss_pred EEEecccCcceeeEEc-CCCCCeeEEEEcCC-----CCEEE-EEeCCCeEEE--------ccCCCCCccEEecC-CcceE
Confidence 9999994 55666665 89999999999986 33444 4444554444 44334444455556 66666
Q ss_pred EEe
Q 000170 600 LSA 602 (1950)
Q Consensus 600 la~ 602 (1950)
.++
T Consensus 263 ~~~ 265 (401)
T 4aez_A 263 KAV 265 (401)
T ss_dssp CEE
T ss_pred EEE
Confidence 333
No 63
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.18 E-value=1.5e-10 Score=147.34 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=103.3
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+....+.++++++++ .+||+|+.+|.|++||... +.+. ...+|.++|++++|||||++||+|+.|
T Consensus 422 ~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~----------~~~~---~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG----------QLLQ---TLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS----------CEEE---EEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC----------CEEE---EEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 345667789999886 7999999999999999621 1111 224588999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|.|++||. ++++++++. +|..+|++|+|+++ ++.++.+++ +|. +++|+ ++.+....+.| |.+
T Consensus 489 ~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~d-----g~~l~s~~~-dg~--------v~lwd-~~~~~~~~~~~-h~~ 550 (577)
T 2ymu_A 489 KTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPD-----GQTIASASD-DKT--------VKLWN-RNGQLLQTLTG-HSS 550 (577)
T ss_dssp SEEEEEET-TSCEEEEEE-CCSSCEEEEEECTT-----SSCEEEEET-TSE--------EEEEC-TTSCEEEEEEC-CSS
T ss_pred CEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCC-----CCEEEEEEC-cCE--------EEEEe-CCCCEEEEEcC-CCC
Confidence 99999995 688888886 99999999999997 344555444 443 45566 35556667778 999
Q ss_pred cEEEeec
Q 000170 598 IVLSASP 604 (1950)
Q Consensus 598 ~Vla~sp 604 (1950)
.|.+++.
T Consensus 551 ~v~~~~f 557 (577)
T 2ymu_A 551 SVWGVAF 557 (577)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9955444
No 64
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.17 E-value=3.3e-10 Score=137.08 Aligned_cols=139 Identities=11% Similarity=0.106 Sum_probs=102.6
Q ss_pred cccccCCCcEEEEEcC----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe
Q 000170 439 AFRRDHGSPQVLAVHP----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG 514 (1950)
.|....+.++|+++++ ++|++|+.||.|++||++.+ +++. ....|.++|++++|+|+|.+||+|
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~---------~~~~---~~~~h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG---------QCVQ---AFETHESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC---------CEEE---EECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC---------cEEE---EecCCCCCeEEEEEeCCCCEEEEE
Confidence 3445566788888753 69999999999999998542 2221 234588999999999999999999
Q ss_pred cCCCcEEEEECCCCceeeeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 515 YADGHVTVWDVQRASAAKVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
+.||+|++||+.+++.+..+.. .|...|++++|+++ +..+++++++ |. +++|+..+.+....+.|
T Consensus 259 s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~-----g~~l~~g~~d-~~--------i~vwd~~~~~~~~~l~~ 324 (354)
T 2pbi_B 259 SDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS-----GRLLFAGYND-YT--------INVWDVLKGSRVSILFG 324 (354)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----SSEEEEEETT-SC--------EEEEETTTCSEEEEECC
T ss_pred eCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-----CCEEEEEECC-Cc--------EEEEECCCCceEEEEEC
Confidence 9999999999999987766642 23468999999987 4455555544 43 45555445555667778
Q ss_pred CccccEEEeec
Q 000170 594 QKTGIVLSASP 604 (1950)
Q Consensus 594 ~~~g~Vla~sp 604 (1950)
|.+.|.+++-
T Consensus 325 -h~~~v~~l~~ 334 (354)
T 2pbi_B 325 -HENRVSTLRV 334 (354)
T ss_dssp -CSSCEEEEEE
T ss_pred -CCCcEEEEEE
Confidence 8888844443
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.17 E-value=7.8e-11 Score=143.36 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=83.4
Q ss_pred CCCcEEEEEc--CCEEEEEeCCC----cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 444 HGSPQVLAVH--PSFIAVGMSKG----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 444 ~G~pt~ia~s--~~~IAvGts~G----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
.+.+++++++ +.++++|+.+| .|.+||.+.. ... ........+|..+|++|+|||||++||+|+.|
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~-------~~~-~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D 290 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSG-------NTS-VLRSKQVTNRFKGITSMDVDMKGELAVLASND 290 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETT-------EEE-EEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccc-------eec-ceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence 3346777766 47899998887 6788887431 111 11111234588999999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
|+|+|||+.++++++++..+|..+|++|+|+|| +..++.+++++
T Consensus 291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd-----g~~laS~S~D~ 334 (365)
T 4h5i_A 291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPD-----STYVASVSAAN 334 (365)
T ss_dssp SCEEEEETTTTEEEEEETTSSSSCEEEEEECTT-----SCEEEEEETTS
T ss_pred CEEEEEECCCCcEEEEecCcccCCEEEEEECCC-----CCEEEEEeCCC
Confidence 999999999999999886799999999999998 34555555443
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.17 E-value=4.8e-09 Score=128.43 Aligned_cols=127 Identities=13% Similarity=0.191 Sum_probs=90.1
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeeccc--------------CCCCCCCeEEEEEc
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLL--------------GDRSPAPVTAMCFN 505 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~--------------~~~h~~~VtsLafS 505 (1950)
...+.++|+++++ .+||+|+ ++.|.+|+...+ .... .+... ...+...|++++||
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g------~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG------SLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC------CEEE--EECC-----------------CCCCBEEEEEEC
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC------CEEE--EecCccccccccccccccccCCCceeEEEEEEC
Confidence 3567789999885 7999986 689999998532 1000 11000 00123359999999
Q ss_pred CCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee
Q 000170 506 QPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI 585 (1950)
Q Consensus 506 ~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~ 585 (1950)
|||++||+|+.||+|++||+.+++++.++. +|...|++++|+++ +..++. +..+|. +++|+..+.
T Consensus 133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~-----~~~l~s-~s~d~~--------v~iwd~~~~ 197 (393)
T 1erj_A 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPS-----GDKLVS-GSGDRT--------VRIWDLRTG 197 (393)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT-----SSEEEE-EETTSE--------EEEEETTTT
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcEEEEEc-cCCCCEEEEEEcCC-----CCEEEE-ecCCCc--------EEEEECCCC
Confidence 999999999999999999999999998886 99999999999987 334444 444444 445554445
Q ss_pred eEEeecC
Q 000170 586 KTQCLLD 592 (1950)
Q Consensus 586 ~s~~ll~ 592 (1950)
++...+.
T Consensus 198 ~~~~~~~ 204 (393)
T 1erj_A 198 QCSLTLS 204 (393)
T ss_dssp EEEEEEE
T ss_pred eeEEEEE
Confidence 4444444
No 67
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.17 E-value=1.4e-10 Score=143.77 Aligned_cols=136 Identities=21% Similarity=0.179 Sum_probs=97.7
Q ss_pred CCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCc
Q 000170 444 HGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGH 519 (1950)
Q Consensus 444 ~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~ 519 (1950)
-+.++||+.+| ++||+|+.||.|+|||+..+ +..... ...+|.++|++|+|+| ||.+|++|+.||+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-------~~~~~~---~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-------DKPTFI---KGIGAGGSITGLKFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-------SCCEEE---CCCSSSCCCCEEEECSSCTTEEEEECSSSC
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-------CceeEE---EccCCCCCEEEEEEeCCCCCEEEEEeCCCE
Confidence 45689999986 58999999999999998531 111121 3456999999999997 7999999999999
Q ss_pred EEEEECCCCceeeeeccCc--CCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 520 VTVWDVQRASAAKVITGEH--TSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H--~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|++||+.++.. +.+...| ...|++++|+++ + ..+++++.+|.|.++... .+....+.| |.+
T Consensus 189 v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~-~~l~~g~~dg~i~~wd~~---------~~~~~~~~~-h~~ 251 (435)
T 4e54_B 189 TRLQDFKGNIL-RVFASSDTINIWFCSLDVSAS-----S-RMVVTGDNVGNVILLNMD---------GKELWNLRM-HKK 251 (435)
T ss_dssp EEEEETTSCEE-EEEECCSSCSCCCCCEEEETT-----T-TEEEEECSSSBEEEEESS---------SCBCCCSBC-CSS
T ss_pred EEEeeccCCce-eEEeccCCCCccEEEEEECCC-----C-CEEEEEeCCCcEeeeccC---------cceeEEEec-ccc
Confidence 99999987654 3343233 567899999987 2 356666777766665532 222334566 888
Q ss_pred cEEEeeccc
Q 000170 598 IVLSASPLL 606 (1950)
Q Consensus 598 ~Vla~spLp 606 (1950)
.|.+++..|
T Consensus 252 ~v~~v~~~p 260 (435)
T 4e54_B 252 KVTHVALNP 260 (435)
T ss_dssp CEEEEEECT
T ss_pred eEEeeeecC
Confidence 885554433
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.16 E-value=3.5e-09 Score=131.35 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=88.8
Q ss_pred ccccCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEc--CCCCE------
Q 000170 440 FRRDHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFN--QPGDL------ 510 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS--~DG~~------ 510 (1950)
+....+.++|++.++ .++++|+.||.|++||+..+ +++. ...+|.++|++++|+ +++.+
T Consensus 158 ~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~---------~~~~---~~~~h~~~v~~l~~~~~~~~~~l~s~s~ 225 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG---------CCTH---VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225 (464)
T ss_dssp ECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT---------EEEE---EECCCSSCEEEEEEEESSSCEEEEEEET
T ss_pred EeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC---------cEEE---EECCCCCccEEEEEecCCCCCEEEEEcC
Confidence 455778899999986 59999999999999998542 1111 123456666666665 34444
Q ss_pred ---------------------------------------------------------EEEecCCCcEEEEECCCCceeee
Q 000170 511 ---------------------------------------------------------LLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 511 ---------------------------------------------------------LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
|++|+.||.|++||+.+++++.+
T Consensus 226 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 305 (464)
T 3v7d_B 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYI 305 (464)
T ss_dssp TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 55555555555555555555566
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeec
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
+. +|..+|++++|.++ +.. ++++..+|.| ++|+..+.+....+.+ |.+.|.++..
T Consensus 306 ~~-~~~~~v~~~~~~~~-----~~~-l~sg~~dg~i--------~vwd~~~~~~~~~~~~-h~~~v~~~~~ 360 (464)
T 3v7d_B 306 LS-GHTDRIYSTIYDHE-----RKR-CISASMDTTI--------RIWDLENGELMYTLQG-HTALVGLLRL 360 (464)
T ss_dssp EC-CCSSCEEEEEEETT-----TTE-EEEEETTSCE--------EEEETTTTEEEEEECC-CSSCEEEEEE
T ss_pred ec-CCCCCEEEEEEcCC-----CCE-EEEEeCCCcE--------EEEECCCCcEEEEEeC-CCCcEEEEEE
Confidence 64 79999999999986 334 4444455544 4455445566667777 7777755444
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.16 E-value=3.8e-09 Score=129.30 Aligned_cols=109 Identities=17% Similarity=0.319 Sum_probs=84.5
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.++|+++++ ++||+|+.||.|++||+..+ +.+. ...+|.++|++++|+|||++|++|+.||+|++|
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~---------~~~~---~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iw 192 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR---------KIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEE---EECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEE---EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 367888875 79999999999999998431 2221 235689999999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|+.++++..++. |...|+.++|++.+ +.. ++++..+|.|..+.
T Consensus 193 d~~~~~~~~~~~--~~~~v~~~~~~~~~----~~~-l~~~s~d~~v~iwd 235 (393)
T 1erj_A 193 DLRTGQCSLTLS--IEDGVTTVAVSPGD----GKY-IAAGSLDRAVRVWD 235 (393)
T ss_dssp ETTTTEEEEEEE--CSSCEEEEEECSTT----CCE-EEEEETTSCEEEEE
T ss_pred ECCCCeeEEEEE--cCCCcEEEEEECCC----CCE-EEEEcCCCcEEEEE
Confidence 999999887774 66789999999842 334 44444555444444
No 70
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.15 E-value=2.4e-10 Score=139.38 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=86.7
Q ss_pred cCCCcEEEEEc---CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVH---PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s---~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
..+.+.+++++ ++++++|+.||.|++||++.. . ..+. ...+|.++|++|+|+|||.+||+|+.||+
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~------~--~~~~---~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT------S--RAVR---TYHGHEGDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT------C--CCCE---EECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC------C--cceE---EECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence 45567888875 479999999999999998531 1 1111 22458999999999999999999999999
Q ss_pred EEEEECCCCceeeeeccC------cCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 520 VTVWDVQRASAAKVITGE------HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~------H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|++||+.+++++.++... |...|++++|+++ +. .++++..+|.|+.+.
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~-~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS-----GR-LLFAGYSNGDCYVWD 326 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS-----SS-EEEEECTTSCEEEEE
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCC-----CC-EEEEEECCCCEEEEE
Confidence 999999999998877522 2235999999987 33 445555566665554
No 71
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.15 E-value=2.1e-09 Score=130.95 Aligned_cols=129 Identities=10% Similarity=0.039 Sum_probs=92.1
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCC
Q 000170 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g 528 (1950)
++.+++++||+|+.+|.|++||...+ +... ....+ ..+...+|++||++||+|+.||.|++||+.++
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~---------~~~~---~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIR---------DGSK---MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSE---------ETTT---TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccc---------ceee---EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence 45566789999999999999998431 1000 11223 45566688999999999999999999999999
Q ss_pred ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeeccc
Q 000170 529 SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 529 ~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~spLp 606 (1950)
++.+.+. +|..+|++++|+++ +.. ++++..+|.|.. |+..+.+....+.+ |.+.|.+++..|
T Consensus 130 ~~~~~~~-~h~~~v~~~~~~~~-----~~~-l~s~s~d~~i~i--------wd~~~~~~~~~~~~-h~~~v~~~~~~~ 191 (420)
T 3vl1_A 130 LQREIDQ-AHVSEITKLKFFPS-----GEA-LISSSQDMQLKI--------WSVKDGSNPRTLIG-HRATVTDIAIID 191 (420)
T ss_dssp EEEEETT-SSSSCEEEEEECTT-----SSE-EEEEETTSEEEE--------EETTTCCCCEEEEC-CSSCEEEEEEET
T ss_pred ceeeecc-cccCccEEEEECCC-----CCE-EEEEeCCCeEEE--------EeCCCCcCceEEcC-CCCcEEEEEEcC
Confidence 9887775 99999999999987 334 444445554444 44334444555667 888885554433
No 72
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.14 E-value=7.5e-09 Score=120.43 Aligned_cols=129 Identities=17% Similarity=0.304 Sum_probs=93.5
Q ss_pred EEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 448 QVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 448 t~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
.||+-++ ++||+|. ||+|+|||...+ +++.. ..+.+|...|++|+|+|||++||+|+.||+|++||+.
T Consensus 29 ~~l~WS~~~~lAvg~-D~tV~iWd~~tg---------~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~ 97 (318)
T 4ggc_A 29 NLVDWSSGNVLAVAL-DNSVYLWSASSG---------DILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97 (318)
T ss_dssp BCEEECTTSEEEEEE-TTEEEEEETTTC---------CEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEECCCCEEEEEe-CCEEEEEECCCC---------CEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC
Confidence 5677665 6899986 899999998532 22211 1456688899999999999999999999999999999
Q ss_pred CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccEEEeec
Q 000170 527 RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 527 ~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
++++++++. +|...+..+.+.+. .++++...|.+..+... . .......+.| |.+.+..+..
T Consensus 98 ~~~~~~~~~-~h~~~~~~~~~~~~--------~l~s~~~~~~~~~~~~~-~------~~~~~~~~~~-~~~~~~~~~~ 158 (318)
T 4ggc_A 98 QQKRLRNMT-SHSARVGSLSWNSY--------ILSSGSRSGHIHHHDVR-V------AEHHVATLSG-HSQEVCGLRW 158 (318)
T ss_dssp TTEEEEEEE-CCSSCEEEEEEETT--------EEEEEETTSEEEEEETT-S------SSCEEEEEEC-CSSCEEEEEE
T ss_pred CceeEEEec-CccceEEEeecCCC--------EEEEEecCCceEeeecC-C------CceeEEEEcC-ccCceEEEEE
Confidence 999999987 99999998888753 55666666666655532 1 1112344555 6666644443
No 73
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.14 E-value=2.2e-10 Score=136.07 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=98.1
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEecC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGYA 516 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~~ 516 (1950)
..+.+.++++++++ ++||+|+.||+|++||++.+ ...+. ....+|.++|++|+|++ +|++||+|+.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~---------~~~~~-~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG---------GQILI-ADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETT---------EEEEE-EEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC---------CcEEE-EEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 44667889999874 89999999999999998421 11111 12346999999999986 4999999999
Q ss_pred CCcEEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 517 DGHVTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 517 dG~I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
||+|++||+.+++ +..++. +|..+|++++|++++ ....++++..+|.|..+....... ......+.+
T Consensus 80 D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~----~g~~lasgs~D~~i~lwd~~~~~~-----~~~~~~~~~- 148 (316)
T 3bg1_A 80 DRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHD----YGLILACGSSDGAISLLTYTGEGQ-----WEVKKINNA- 148 (316)
T ss_dssp TSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTT----TCSCEEEECSSSCEEEEEECSSSC-----EEECCBTTS-
T ss_pred CCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCC----CCcEEEEEcCCCCEEEEecCCCCC-----cceeeeecc-
Confidence 9999999999884 455664 899999999999862 123455555566555554321101 112345666
Q ss_pred ccccE--EEeec
Q 000170 595 KTGIV--LSASP 604 (1950)
Q Consensus 595 ~~g~V--la~sp 604 (1950)
|.+.| ++++|
T Consensus 149 h~~~v~~~~~~~ 160 (316)
T 3bg1_A 149 HTIGCNAVSWAP 160 (316)
T ss_dssp SSSCBCCCEECC
T ss_pred ccCCcceEEEcc
Confidence 77666 45555
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.13 E-value=2.3e-09 Score=142.48 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=91.6
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.+....+.++|++.++ ++||+|+.+|.|.+||+..+ +.+. ....|.++|++++|+|||.+|++|+.
T Consensus 50 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---------~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~ 117 (814)
T 3mkq_A 50 SIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---------EKVV---DFEAHPDYIRSIAVHPTKPYVLSGSD 117 (814)
T ss_dssp EEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---------CEEE---EEECCSSCEEEEEECSSSSEEEEEET
T ss_pred EEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------cEEE---EEecCCCCEEEEEEeCCCCEEEEEcC
Confidence 3445677889998875 89999999999999998532 2221 22458899999999999999999999
Q ss_pred CCcEEEEECCCC-ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 517 DGHVTVWDVQRA-SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 517 dG~I~lWDl~~g-~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
||+|++||+.++ .+.+.+. +|..+|++++|++++ + ..++++..+|.|..+..
T Consensus 118 dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~----~-~~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKD----P-STFASGCLDRTVKVWSL 170 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTE----E-EEEEEEETTSEEEEEET
T ss_pred CCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCC----C-CEEEEEeCCCeEEEEEC
Confidence 999999999987 5556665 999999999999831 2 35555556666665553
No 75
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.4e-09 Score=128.55 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=89.4
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~dG~ 519 (1950)
..+.++|++.++ .+||+|+.+|.|++||+.... ...+... ....|.++|++++|+|| +.+|++|+.||.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~-----~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN-----NAINSMA---RFSNHSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT-----SCCCEEE---ECCCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeeccccc-----ccccchh---hccCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence 456789999875 799999999999999985310 0111121 34568999999999999 999999999999
Q ss_pred EEEEECCCCc------eeeee--ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQRAS------AAKVI--TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~g~------~l~tl--~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|++||+.+++ ....+ ..+|...|++++|++++ ...++++..+|.|..+..
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~ 195 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL-----AHVFASAGSSNFASIWDL 195 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC-----TTEEEEESSSSCEEEEET
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC-----CcEEEEEcCCCCEEEEEC
Confidence 9999999987 33222 23799999999999862 345666666776655553
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.12 E-value=2.8e-09 Score=130.79 Aligned_cols=124 Identities=11% Similarity=0.172 Sum_probs=83.9
Q ss_pred CCcEEEEEcC----CEEEEEeCCCcEEEEeCCCCCCcc-----Ccccc-----------e--------e----eeecccC
Q 000170 445 GSPQVLAVHP----SFIAVGMSKGAIVVVPGKYSAHHR-----DSMDS-----------K--------M----MMLGLLG 492 (1950)
Q Consensus 445 G~pt~ia~s~----~~IAvGts~G~I~vfd~k~~~~~~-----d~~~~-----------k--------~----~~l~~~~ 492 (1950)
+.+++++.++ .++++|+.||.|++||+..+.... ....+ . . .......
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 6789999886 479999999999999974210000 00000 0 0 0000012
Q ss_pred CCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC-Cceeeee------ccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 493 DRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR-ASAAKVI------TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 493 ~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~-g~~l~tl------~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
.+|.++|++++|+|||++||+| .||.|++||+.+ +++++.+ ..+|...|++++|+++ +...++++..
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~s~~~ 247 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPN-----SCNTFVYSSS 247 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSS-----CTTEEEEEET
T ss_pred cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCC-----CCcEEEEEeC
Confidence 4689999999999999999999 799999999994 5555532 2489999999999987 3134555555
Q ss_pred CceEEEEcc
Q 000170 566 KGLVQLHSL 574 (1950)
Q Consensus 566 ~G~V~~h~f 574 (1950)
+|.|..+..
T Consensus 248 dg~i~iwd~ 256 (447)
T 3dw8_B 248 KGTIRLCDM 256 (447)
T ss_dssp TSCEEEEET
T ss_pred CCeEEEEEC
Confidence 565555443
No 77
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1e-10 Score=150.01 Aligned_cols=138 Identities=7% Similarity=0.039 Sum_probs=102.0
Q ss_pred ccccCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEE--EEcCCC-CEEEEec
Q 000170 440 FRRDHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAM--CFNQPG-DLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsL--afS~DG-~~LasG~ 515 (1950)
++...+.++|++.++ .+||+|+.||+|.+||++.+ .... . ....|.++|++| +|+++| .+||+|+
T Consensus 262 l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~------~~~~-~----~~~~H~~~V~sv~~~~s~~g~~~laS~S 330 (524)
T 2j04_B 262 LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDP------EVPS-F----YDQVHDSYILSVSTAYSDFEDTVVSTVA 330 (524)
T ss_dssp ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBC------SSCS-E----EEECSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCC------CCce-E----EeecccccEEEEEEEcCCCCCeEEEEec
Confidence 344557889999875 79999999999999998531 1111 1 123589999999 689998 9999999
Q ss_pred CCCcEEEEECCCCceeeeeccCcC--CCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHT--SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~--~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
.||+|+|||+.++++.+++. +|. ..|.+|+|+|+ ++.++.+++++ . +++|+..+..+...+.|
T Consensus 331 ~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~-----~~~l~s~~~d~-t--------v~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 331 VDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQ-----IYSYIYSDGAS-S--------LRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp TTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETT-----TTEEEEECSSS-E--------EEEEETTCTTCCEEEEE
T ss_pred cCCeEEEEECCCCCcccccc-cccccCcccceEeCCC-----cCeEEEeCCCC-c--------EEEEECcccccceeeec
Confidence 99999999999999888886 665 35899999997 34555444443 2 55666555555556677
Q ss_pred CccccEEEeec
Q 000170 594 QKTGIVLSASP 604 (1950)
Q Consensus 594 ~~~g~Vla~sp 604 (1950)
|.+.|.+++.
T Consensus 396 -H~~~V~sva~ 405 (524)
T 2j04_B 396 -RETTITAIGV 405 (524)
T ss_dssp -CSSCEEEEEC
T ss_pred -CCCceEEEEe
Confidence 9999955444
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.11 E-value=4.1e-09 Score=130.39 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=97.5
Q ss_pred ccccCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 440 FRRDHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+....+.++|+++++++||+|+.+|.|++||...+ +.+. ....|.++|++++|+ +.+|++|+.||.
T Consensus 169 ~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~---------~~~~---~~~~h~~~v~~l~~~--~~~l~s~s~dg~ 234 (435)
T 1p22_A 169 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG---------EMLN---TLIHHCEAVLHLRFN--NGMMVTCSKDRS 234 (435)
T ss_dssp ECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC---------CEEE---EECCCCSCEEEEECC--TTEEEEEETTSC
T ss_pred EcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC---------cEEE---EEcCCCCcEEEEEEc--CCEEEEeeCCCc
Confidence 45567789999999999999999999999998532 1121 234588999999996 469999999999
Q ss_pred EEEEECCCCcee---eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcc
Q 000170 520 VTVWDVQRASAA---KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKT 596 (1950)
Q Consensus 520 I~lWDl~~g~~l---~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~ 596 (1950)
|++||+.+++.. ..+ .+|..+|+++.|.+ . .++++..+|.|.. |+..+.+....+.+ |.
T Consensus 235 i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~-------~-~l~s~~~dg~i~v--------wd~~~~~~~~~~~~-~~ 296 (435)
T 1p22_A 235 IAVWDMASPTDITLRRVL-VGHRAAVNVVDFDD-------K-YIVSASGDRTIKV--------WNTSTCEFVRTLNG-HK 296 (435)
T ss_dssp EEEEECSSSSCCEEEEEE-CCCSSCEEEEEEET-------T-EEEEEETTSEEEE--------EETTTCCEEEEEEC-CS
T ss_pred EEEEeCCCCCCceeeeEe-cCCCCcEEEEEeCC-------C-EEEEEeCCCeEEE--------EECCcCcEEEEEcC-CC
Confidence 999999998765 444 49999999999953 2 3444445554444 44444555555666 66
Q ss_pred ccEEEeec
Q 000170 597 GIVLSASP 604 (1950)
Q Consensus 597 g~Vla~sp 604 (1950)
+.|.++..
T Consensus 297 ~~v~~~~~ 304 (435)
T 1p22_A 297 RGIACLQY 304 (435)
T ss_dssp SCEEEEEE
T ss_pred CcEEEEEe
Confidence 66654443
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=6.9e-09 Score=129.09 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=97.9
Q ss_pred cCCCcEEEEEcC--CEE-EEEeCCCcEEEEeCC--CCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 443 DHGSPQVLAVHP--SFI-AVGMSKGAIVVVPGK--YSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~I-AvGts~G~I~vfd~k--~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
..+.++|+++++ .+| |+|+.+|.|++||+. .+ .. ...+ ....+.+.|++|+|+|||++|++|+.+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~------~~-~~~~---~~~~~~~~v~~~~~sp~~~~l~~~~~~ 170 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK------NV-LKLR---KRFCFSKRPNAISIAEDDTTVIIADKF 170 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS------SC-EEEE---EEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC------ce-eeee---ecccCCCCceEEEEcCCCCEEEEEeCC
Confidence 466789999886 675 999999999999985 21 11 1111 112367889999999999999999999
Q ss_pred CcEEEEECCCCceee----eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEE-eecC
Q 000170 518 GHVTVWDVQRASAAK----VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQ-CLLD 592 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~----tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~-~ll~ 592 (1950)
|.|++||+.+++... ++. +|..+|++++|+++. .+...+++++.+|.|..+.+ .+.+.. .++.
T Consensus 171 g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~---~~~~~l~s~~~d~~i~vwd~--------~~~~~~~~~~~ 238 (450)
T 2vdu_B 171 GDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIKDS---DGHQFIITSDRDEHIKISHY--------PQCFIVDKWLF 238 (450)
T ss_dssp SEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEECT---TSCEEEEEEETTSCEEEEEE--------SCTTCEEEECC
T ss_pred CcEEEEecCCcccccccceeee-cccCceEEEEEcCCC---CCCcEEEEEcCCCcEEEEEC--------CCCceeeeeec
Confidence 999999999887654 554 899999999999860 01245566666665555443 233322 3355
Q ss_pred CCccccEEEeec
Q 000170 593 GQKTGIVLSASP 604 (1950)
Q Consensus 593 g~~~g~Vla~sp 604 (1950)
| |.+.|.+++.
T Consensus 239 ~-h~~~v~~~~~ 249 (450)
T 2vdu_B 239 G-HKHFVSSICC 249 (450)
T ss_dssp C-CSSCEEEEEE
T ss_pred C-CCCceEEEEE
Confidence 6 7777755443
No 80
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.11 E-value=2.4e-09 Score=132.68 Aligned_cols=125 Identities=13% Similarity=0.124 Sum_probs=89.8
Q ss_pred cccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccC-cccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEec
Q 000170 441 RRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRD-SMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGY 515 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d-~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~ 515 (1950)
....|.|+++++++ .+||+|+.+|.|.+||+........ ......+. ....|.++|++|+|+|++. +|++|+
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL---RLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE---EEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE---EecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 44678899999986 4899999999999999843110000 00011111 2235889999999999999 999999
Q ss_pred CCCcEEEEECCCCce-------eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 516 ADGHVTVWDVQRASA-------AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~-------l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.||.|++||+.++.. ...+. +|...|.+++|++++ ...++++...|.|..+.+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~-----~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLH-----ESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSC-----TTEEEEEETTSEEEEEET
T ss_pred CCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCC-----CCEEEEEeCCCeEEEEEC
Confidence 999999999998432 33443 899999999999852 345555666676766664
No 81
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.09 E-value=2.4e-09 Score=124.72 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=92.1
Q ss_pred ccccCCCcEEEEEc----CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEE
Q 000170 440 FRRDHGSPQVLAVH----PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLA 513 (1950)
Q Consensus 440 f~~~~G~pt~ia~s----~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~Las 513 (1950)
+....+.++|++.+ +.+||+|+.||.|++||+..+.........+.+. ....|.++|++++|+|+ |.+|++
T Consensus 53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~ 129 (351)
T 3f3f_A 53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLC---TLNDSKGSLYSVKFAPAHLGLKLAC 129 (351)
T ss_dssp EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEE---EECCCSSCEEEEEECCGGGCSEEEE
T ss_pred eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceee---eecccCCceeEEEEcCCCCCcEEEE
Confidence 34567789999986 5799999999999999985421000000001111 23458899999999999 999999
Q ss_pred ecCCCcEEEEECCCCcee------------------------------------------------------------ee
Q 000170 514 GYADGHVTVWDVQRASAA------------------------------------------------------------KV 533 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l------------------------------------------------------------~t 533 (1950)
|+.||.|++||+.+++.+ ..
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK 209 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee
Confidence 999999999999876532 22
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+ .+|..+|++++|+++++. ....++++..+|.|..+...
T Consensus 210 ~-~~h~~~i~~~~~~p~~~~--~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 210 L-PGHKSLIRSISWAPSIGR--WYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp C-CCCCSCEEEEEECCCSSC--SSEEEEEEETTSCEEEEEEE
T ss_pred c-CCCCcceeEEEECCCCCC--cceEEEEEcCCCeEEEEeCC
Confidence 2 278999999999987310 01466666677777766653
No 82
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3e-09 Score=142.00 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=101.8
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEEec
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~LasG~ 515 (1950)
+..+.|.++|+++++ ++||+|+.+|.|+|||... ...+... ...+|.++|++|+|+++ |++|++|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-------~~~~~~~---~l~~h~~~V~~l~~s~~~~~~~l~s~s 74 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------ETHKLID---TLTGHEGPVWRVDWAHPKFGTILASCS 74 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEET-------TEEEEEE---EECCCSSCEEEEEECCTTSCSEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCC-------CCCccce---eccCCcCceEEEEecCCCCCCEEEEEe
Confidence 455678899999875 7899999999999999732 1112121 33568999999999998 99999999
Q ss_pred CCCcEEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCC
Q 000170 516 ADGHVTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDG 593 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g 593 (1950)
.||+|++||+.+++ ....+. +|..+|++++|++++ ....++++..+|.|..+..... .......+.+
T Consensus 75 ~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~----~~~~l~sgs~dg~I~vwdl~~~------~~~~~~~~~~ 143 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHE----YGPLLLVASSDGKVSVVEFKEN------GTTSPIIIDA 143 (753)
T ss_dssp TTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGG----GCSEEEEEETTSEEEEEECCSS------SCCCCEEEEC
T ss_pred CCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCC----CCCEEEEEeCCCcEEEEEeecC------CCcceeEeec
Confidence 99999999999987 566665 899999999999861 1235566666676666654211 0112233455
Q ss_pred CccccEEEeecc
Q 000170 594 QKTGIVLSASPL 605 (1950)
Q Consensus 594 ~~~g~Vla~spL 605 (1950)
|.+.|.++...
T Consensus 144 -~~~~v~~l~~~ 154 (753)
T 3jro_A 144 -HAIGVNSASWA 154 (753)
T ss_dssp -CSSCEEEEEEC
T ss_pred -CCCceEEEEec
Confidence 77777544443
No 83
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.09 E-value=6.8e-09 Score=125.24 Aligned_cols=121 Identities=13% Similarity=0.098 Sum_probs=87.1
Q ss_pred ccccCCCcEEEEEc------C---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCC-----CCCeEEEEEc
Q 000170 440 FRRDHGSPQVLAVH------P---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRS-----PAPVTAMCFN 505 (1950)
Q Consensus 440 f~~~~G~pt~ia~s------~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h-----~~~VtsLafS 505 (1950)
+....+.++|++++ + .+||+|+.+|.|.+||+..+ ....+... . ....| .++|++++|+
T Consensus 58 ~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~-~-~~~~~~~~~~~~~v~~~~~~ 130 (397)
T 1sq9_A 58 HFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE-----DETKKVIF-E-KLDLLDSDMKKHSFWALKWG 130 (397)
T ss_dssp EECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEEC-----TTTCCEEE-E-EECCSCTTGGGSCEEEEEEE
T ss_pred EecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCC-----cccccccc-e-eecccccccCCCcEEEEEEe
Confidence 34456678888776 5 69999999999999998431 00000001 1 12334 5899999999
Q ss_pred ----CCCCE-EEEecCCCcEEEEECCC------Cceee-----eec------cCcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 506 ----QPGDL-LLAGYADGHVTVWDVQR------ASAAK-----VIT------GEHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 506 ----~DG~~-LasG~~dG~I~lWDl~~------g~~l~-----tl~------~~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
|+|.+ |++|+.||.|++||+.+ +++++ ++. ..|...|++++|+++ + .++++
T Consensus 131 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~--~l~~~ 203 (397)
T 1sq9_A 131 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-----G--LIATG 203 (397)
T ss_dssp CCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-----S--EEEEE
T ss_pred eccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCC-----c--eEEEE
Confidence 99999 99999999999999999 77776 664 358899999999986 4 66666
Q ss_pred cCCceEEEEcc
Q 000170 564 DTKGLVQLHSL 574 (1950)
Q Consensus 564 D~~G~V~~h~f 574 (1950)
..+|.|..+..
T Consensus 204 ~~dg~i~i~d~ 214 (397)
T 1sq9_A 204 FNNGTVQISEL 214 (397)
T ss_dssp CTTSEEEEEET
T ss_pred eCCCcEEEEEC
Confidence 67776666654
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.08 E-value=9e-10 Score=140.59 Aligned_cols=136 Identities=15% Similarity=0.102 Sum_probs=104.8
Q ss_pred cCCCcEEEEEcCCEEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 443 DHGSPQVLAVHPSFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
..+.++++++++.++|+|+. +|.|.+||...+ . ... .....|.++|++++|||||++||+|+.||.|+
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~---------~-~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~ 513 (615)
T 1pgu_A 445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL---------E-VSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKIL 513 (615)
T ss_dssp CSSCEEEEEECSSEEEEEETTTSCEEEEETTEE---------E-EEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cCCCceEEEEcCCEEEEeecCCCeEEEEECCCc---------c-ccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEE
Confidence 45678999999999999999 999999998421 1 110 13456889999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEec----------CCCccCCceEEEEecCCceEEEEcccccccccceee-eEEee
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLG----------QDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI-KTQCL 590 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~----------d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~-~s~~l 590 (1950)
+||+.+++++..+.+.|..+|++++|++ + +. .+++++.+|.|..+.. .+. +....
T Consensus 514 iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~-----~~-~l~~~~~dg~i~iw~~--------~~~~~~~~~ 579 (615)
T 1pgu_A 514 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE-----ED-LVATGSLDTNIFIYSV--------KRPMKIIKA 579 (615)
T ss_dssp EEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS-----CC-EEEEEETTSCEEEEES--------SCTTCCEEE
T ss_pred EeeCCCCcceeEeecCCCCceeEEEEcCccccccccccC-----CC-EEEEEcCCCcEEEEEC--------CCCceechh
Confidence 9999999999988745999999999998 5 33 4455555555555543 333 34566
Q ss_pred cCCCccccEEEeec
Q 000170 591 LDGQKTGIVLSASP 604 (1950)
Q Consensus 591 l~g~~~g~Vla~sp 604 (1950)
+.| |.+.|.+++.
T Consensus 580 ~~~-h~~~v~~l~~ 592 (615)
T 1pgu_A 580 LNA-HKDGVNNLLW 592 (615)
T ss_dssp TTS-STTCEEEEEE
T ss_pred hhc-CccceEEEEE
Confidence 778 8888855444
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.08 E-value=4.1e-10 Score=143.51 Aligned_cols=92 Identities=20% Similarity=0.305 Sum_probs=75.6
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC-----CeEEEEEcCCCCEEEEecC
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA-----PVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~-----~VtsLafS~DG~~LasG~~ 516 (1950)
.+.+++++.++ ++||+|+.+|.|++||.+. ++. ..+ |.. .|.+++|||||++||+|+.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------~l~---~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------MLT---NLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------EEE---ECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------eee---ecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 45689999986 7999999999999999521 122 223 443 5999999999999999999
Q ss_pred CCcEEEEECCCCce-------eeeec---cCcCCCeEEEEEecC
Q 000170 517 DGHVTVWDVQRASA-------AKVIT---GEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 517 dG~I~lWDl~~g~~-------l~tl~---~~H~~~I~~v~F~~d 550 (1950)
||+|+|||+.++.. ++++. .+|...|.+|+|+||
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 99999999999863 56662 479999999999987
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.08 E-value=2.5e-08 Score=119.95 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=105.2
Q ss_pred cccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeee-------cccCCCCCCCeEEEEEcC-CCC
Q 000170 441 RRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMML-------GLLGDRSPAPVTAMCFNQ-PGD 509 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l-------~~~~~~h~~~VtsLafS~-DG~ 509 (1950)
+...+.++|+++++ ++||+|+.+|.|++||+..+. ....... ......|.++|++++|+| ++.
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS------RQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS------SSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc------ccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 44667889999975 899999999999999985421 0010100 001135889999999999 888
Q ss_pred EEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEe
Q 000170 510 LLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQC 589 (1950)
Q Consensus 510 ~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ 589 (1950)
+|++|+.||.|++||+.+++....+. |...|..+.|.+.++ ....++++..+|.|..+.. .+.+...
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~d~--------~~~~~~~ 180 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVST---KHCLVAVGTRGPKVQLCDL--------KSGSCSH 180 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCS---SCCEEEEEESSSSEEEEES--------SSSCCCE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc--CCCceeeeEeecCCC---CCcEEEEEcCCCeEEEEeC--------CCcceee
Confidence 99999999999999999999888774 788999999998632 3345666666666665554 2334445
Q ss_pred ecCCCccccEEEeeccc
Q 000170 590 LLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 590 ll~g~~~g~Vla~spLp 606 (1950)
.+.+ |.+.|.+++..|
T Consensus 181 ~~~~-~~~~v~~~~~~~ 196 (408)
T 4a11_B 181 ILQG-HRQEILAVSWSP 196 (408)
T ss_dssp EECC-CCSCEEEEEECS
T ss_pred eecC-CCCcEEEEEECC
Confidence 5666 777885555443
No 87
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.08 E-value=8.1e-09 Score=124.68 Aligned_cols=139 Identities=22% Similarity=0.158 Sum_probs=99.7
Q ss_pred cccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecC
Q 000170 441 RRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYA 516 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~ 516 (1950)
....+.++|++.++ .+||+|+.+|.|++||...+ ...... ...+|.++|++++|+| ++.+|++|+.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-------NKTSFI---QGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-------TCEEEE---CCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-------ccceee---ecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 34567789999986 58999999999999998531 111111 3346899999999999 7899999999
Q ss_pred CCcEEEEECCCCceeeeecc--CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCC
Q 000170 517 DGHVTVWDVQRASAAKVITG--EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQ 594 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~--~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~ 594 (1950)
||.|++||+.+ ..++.+.. +|...|++++|+++ +. .+++++.+|.|..+.. ..+....+.+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~-----~~-~l~~~~~d~~i~i~d~---------~~~~~~~~~~- 202 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVS-----RQ-MLATGDSTGRLLLLGL---------DGHEIFKEKL- 202 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETT-----TT-EEEEEETTSEEEEEET---------TSCEEEEEEC-
T ss_pred CCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCC-----CC-EEEEECCCCCEEEEEC---------CCCEEEEecc-
Confidence 99999999996 55555542 44588999999987 33 4555566666666554 2333444556
Q ss_pred ccccEEEeeccc
Q 000170 595 KTGIVLSASPLL 606 (1950)
Q Consensus 595 ~~g~Vla~spLp 606 (1950)
|.+.|.+++..|
T Consensus 203 h~~~v~~~~~~~ 214 (383)
T 3ei3_B 203 HKAKVTHAEFNP 214 (383)
T ss_dssp SSSCEEEEEECS
T ss_pred CCCcEEEEEECC
Confidence 777785554433
No 88
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.5e-09 Score=129.62 Aligned_cols=113 Identities=9% Similarity=0.178 Sum_probs=83.2
Q ss_pred CcEEEEEcC--C-EEEEE----------eCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEE
Q 000170 446 SPQVLAVHP--S-FIAVG----------MSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLL 512 (1950)
Q Consensus 446 ~pt~ia~s~--~-~IAvG----------ts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~La 512 (1950)
.++|++.++ . ++|+| +.+|.|++||+..+ ...+.+ ....|.++|++++|+|||++||
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~------~~~~~~----~~~~~~~~v~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAA------DSEKPI----ASLQVDSKFNDLDWSHNNKIIA 83 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSG------GGCSCS----CCCCCSSCEEEEEECSSSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCC------CCCcEE----EEEecCCceEEEEECCCCCeEE
Confidence 456666665 3 89999 88999999998532 100111 1124788999999999999999
Q ss_pred EecCCCcEEEEECCC----CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 513 AGYADGHVTVWDVQR----ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 513 sG~~dG~I~lWDl~~----g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+|+.||.|++||+.+ .+.+..+. +|..+|++++|++++ + ..++++..+|.|..+..
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~----~-~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQ----D-NVLASGGNNGEIFIWDM 143 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSS----T-TBEEEECSSSCEEBCBT
T ss_pred EEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCC----C-CEEEEEcCCCeEEEEEC
Confidence 999999999999998 34667775 899999999999862 2 34555555665554443
No 89
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.07 E-value=5.7e-09 Score=123.34 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=87.7
Q ss_pred ccccCCCcEEEEEcC---CEEEEEeC---CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC---CCE
Q 000170 440 FRRDHGSPQVLAVHP---SFIAVGMS---KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP---GDL 510 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~---~~IAvGts---~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D---G~~ 510 (1950)
++...+.+++++.++ .++|+|+. +|.|.+||+..+ ...... ..+|.++|++++|+|+ |.+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-------~~~~~~----~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-------DLKLLR----EIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-------SEEEEE----EEEESSCEEEEECTTCCTTTCC
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-------ccccee----eecccCcEEEEEEcCCCCCCce
Confidence 345677899999987 46677876 999999998532 111111 1247889999999999 799
Q ss_pred EEEecCCCcEEEEECCCCc-eeeeeccCcCCCeEEEEEecC-CCccCCceEEEEecCCceEEEEcc
Q 000170 511 LLAGYADGHVTVWDVQRAS-AAKVITGEHTSPVVHTLFLGQ-DSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 511 LasG~~dG~I~lWDl~~g~-~l~tl~~~H~~~I~~v~F~~d-~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|++|+.||.|++||+.+++ .+..+. +|...|+++.|.+. .+.+.+ ..++++..+|.|..+..
T Consensus 83 l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp EEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECT
T ss_pred EEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeC
Confidence 9999999999999999998 777886 99999999977631 000012 34555566665555554
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.06 E-value=9e-09 Score=121.31 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=85.1
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEecCCCc
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~~dG~ 519 (1950)
..+.++|+++++ .+||+|+.+|.|++||+..+ ....... ....|.++|++++|++||+ +|++|+.||.
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~------~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ------AKNVDLL---QSLRYKHPLLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETT------TTEEEEE---EEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCC------Cccccce---eeeecCCceEEEEECCCCCcEEEEEcCCCe
Confidence 456789999875 79999999999999998431 1000011 1124789999999999999 9999999999
Q ss_pred EEEEEC-CCCceeeeeccC--cCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 520 VTVWDV-QRASAAKVITGE--HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 520 I~lWDl-~~g~~l~tl~~~--H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|++||+ .+++. ..+. + |...|++++|++ + ..++++..+|.|..+.
T Consensus 81 i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~-~------~~l~s~~~d~~i~iwd 128 (342)
T 1yfq_A 81 ILKVDLIGSPSF-QALT-NNEANLGICRICKYG-D------DKLIAASWDGLIEVID 128 (342)
T ss_dssp EEEECSSSSSSE-EECB-SCCCCSCEEEEEEET-T------TEEEEEETTSEEEEEC
T ss_pred EEEEEeccCCce-Eecc-ccCCCCceEEEEeCC-C------CEEEEEcCCCeEEEEc
Confidence 999999 88766 4554 7 999999999996 2 2455555556555554
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.06 E-value=7.1e-09 Score=127.18 Aligned_cols=122 Identities=9% Similarity=0.163 Sum_probs=85.9
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCcc--CcccceeeeecccCCCCC------------CCeEEEEEcC
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHR--DSMDSKMMMLGLLGDRSP------------APVTAMCFNQ 506 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~--d~~~~k~~~l~~~~~~h~------------~~VtsLafS~ 506 (1950)
..+.++|+++++ ++||+|+.+|.|+|||+..+.... .....+... ...+|. ++|++|+|+|
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~---~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYS---TFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEE---EEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEec---ccccccccccccccccccCceEEEEEcC
Confidence 467889999986 799999999999999985321000 000000111 223476 8899999999
Q ss_pred CC--CEEEEecCCCcEEEEECCCCcee---------------------------------------eeeccCcCCCeEEE
Q 000170 507 PG--DLLLAGYADGHVTVWDVQRASAA---------------------------------------KVITGEHTSPVVHT 545 (1950)
Q Consensus 507 DG--~~LasG~~dG~I~lWDl~~g~~l---------------------------------------~tl~~~H~~~I~~v 545 (1950)
++ .+|++|+.||+|++||+.++... +.+..+|...|+++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 99 89999999999999999875542 23345899999999
Q ss_pred EEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 546 LFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 546 ~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+|+++ +.. ++++ .+|.|..+..
T Consensus 184 ~~~~~-----~~~-l~s~-~d~~i~iwd~ 205 (447)
T 3dw8_B 184 SINSD-----YET-YLSA-DDLRINLWHL 205 (447)
T ss_dssp EECTT-----SSE-EEEE-CSSEEEEEET
T ss_pred EEcCC-----CCE-EEEe-CCCeEEEEEC
Confidence 99987 334 4445 4665555543
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3.1e-08 Score=114.73 Aligned_cols=237 Identities=12% Similarity=0.114 Sum_probs=142.0
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
....+.+++++.++ .+|++|+.+|.|.+|++... ...+.+. ....|.++|++++| ++.+|++|+.||
T Consensus 56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~------~~~~~~~---~~~~~~~~i~~~~~--~~~~l~~~~~d~ 124 (313)
T 3odt_A 56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT------SGEDPLY---TLIGHQGNVCSLSF--QDGVVISGSWDK 124 (313)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC------TTSCC-C---EECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec------CCCCccc---chhhcccCEEEEEe--cCCEEEEEeCCC
Confidence 34567789998875 79999999999999998431 1111111 22458899999999 788999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcccc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGI 598 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~ 598 (1950)
.|++|| .++....+. +|..+|.+++|.+.+ +.. ++++..+|.|.. |+ ..+..+.+.+.+.+.
T Consensus 125 ~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~----~~~-l~~~~~d~~i~i--------~d--~~~~~~~~~~~~~~~ 186 (313)
T 3odt_A 125 TAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFS----ENK-FLTASADKTIKL--------WQ--NDKVIKTFSGIHNDV 186 (313)
T ss_dssp EEEEEE--TTEEEEEEE-CCSSCEEEEEEEETT----TTE-EEEEETTSCEEE--------EE--TTEEEEEECSSCSSC
T ss_pred CEEEEc--CCcEEEecc-cCCCceeEEEEccCC----CCE-EEEEECCCCEEE--------Ee--cCceEEEEeccCccc
Confidence 999999 677777776 899999999999831 334 444445554444 43 122233333334455
Q ss_pred EEEeecccccccCCCCCCCCCCCCcccccccccccccccccCCcccccccCCCcccccEEEEEeccEEEEEEeccCceee
Q 000170 599 VLSASPLLFDESCGGAPLSSQGNSTASASSIGSMMGGVVGSDTGWKLFNEGSSLVEEGVVIFVTYQTALVVRLTPTLEVY 678 (1950)
Q Consensus 599 Vla~spLp~~~~~gs~~~~~~gn~~~~t~~~~~~~~~vv~~~s~~k~~~~~~s~~~~glVAl~T~~~~~IV~l~P~~~v~ 678 (1950)
|.++...|- + . +++-.....+.|..++.. +..
T Consensus 187 i~~~~~~~~------------~-------~----------------------------~~~~~~dg~i~i~d~~~~-~~~ 218 (313)
T 3odt_A 187 VRHLAVVDD------------G-------H----------------------------FISCSNDGLIKLVDMHTG-DVL 218 (313)
T ss_dssp EEEEEEEET------------T-------E----------------------------EEEEETTSEEEEEETTTC-CEE
T ss_pred EEEEEEcCC------------C-------e----------------------------EEEccCCCeEEEEECCch-hhh
Confidence 533333220 0 0 111111112223332211 111
Q ss_pred eeccCCCCCCCCCCCccccceeecccCCCCCCCcccccccceeEEEEEcCeeEEEEeeecceeEeeEEec-cccceeeee
Q 000170 679 AQIPRPDGVREGAMPYTAWKCMTTCRSSTTESIPTEAAERVSLLAIAWDRKVQVAKLVKSELKVYGKWSL-DSAAIGVAW 757 (1950)
Q Consensus 679 ~k~~rP~~v~~~slp~laW~~~~~~~~~~~~~~~~~~~~~~~~LA~aWgn~l~vl~~~k~~~~~~~~~~~-~~~I~~l~W 757 (1950)
.++... .+.+.+++|.+. . .+++.+.++.|.+.++... .....+.. ...|.++.|
T Consensus 219 ~~~~~~----~~~i~~~~~~~~-----------------~-~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~i~~~~~ 274 (313)
T 3odt_A 219 RTYEGH----ESFVYCIKLLPN-----------------G-DIVSCGEDRTVRIWSKENG--SLKQVITLPAISIWSVDC 274 (313)
T ss_dssp EEEECC----SSCEEEEEECTT-----------------S-CEEEEETTSEEEEECTTTC--CEEEEEECSSSCEEEEEE
T ss_pred hhhhcC----CceEEEEEEecC-----------------C-CEEEEecCCEEEEEECCCC--ceeEEEeccCceEEEEEE
Confidence 222111 123334555431 1 2566777788888775332 23333343 447999999
Q ss_pred ccCCeEEEEeecCeEEEEecC
Q 000170 758 LDDQMLVVLTLLGQLYLYARD 778 (1950)
Q Consensus 758 Ls~~iL~vLt~s~~L~l~d~~ 778 (1950)
-.+.-+++-..++.+.+++..
T Consensus 275 ~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 275 MSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CTTSCEEEEETTSCEEEEESC
T ss_pred ccCCCEEEEeCCCcEEEEeCC
Confidence 988767777888889999864
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.4e-09 Score=130.11 Aligned_cols=106 Identities=12% Similarity=0.136 Sum_probs=85.1
Q ss_pred CCCcEEEEEcC----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 444 HGSPQVLAVHP----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 444 ~G~pt~ia~s~----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
.+.+++++.++ .++|+|+.||.|++||++.+ +.+.. ....+..+|++++|+|||.+||+|+.||.
T Consensus 125 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---------~~~~~--~~~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 125 ANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD---------SQYIV--HSAKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp SSCEEEEECCC---CCEEEEEETTCCEEEEESSSS---------CEEEE--ECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred CCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC---------cEEEE--EecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 36688988865 68999999999999998532 22221 11235668999999999999999999999
Q ss_pred EEEEECCCCcee-eeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 520 VTVWDVQRASAA-KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 520 I~lWDl~~g~~l-~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
|++||+.+++++ .++..+|..+|++++|+++ +..++.++|+
T Consensus 194 i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~-----g~~l~s~~~~ 235 (343)
T 3lrv_A 194 LDVYNLSSPDQASSRFPVDEEAKIKEVKFADN-----GYWMVVECDQ 235 (343)
T ss_dssp EEEEESSCTTSCCEECCCCTTSCEEEEEECTT-----SSEEEEEESS
T ss_pred EEEEECCCCCCCccEEeccCCCCEEEEEEeCC-----CCEEEEEeCC
Confidence 999999999988 7787459999999999987 4566666654
No 94
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.03 E-value=3e-09 Score=125.03 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=87.1
Q ss_pred ccCCCcEEEEEcC----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC----------
Q 000170 442 RDHGSPQVLAVHP----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP---------- 507 (1950)
Q Consensus 442 ~~~G~pt~ia~s~----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D---------- 507 (1950)
...+.+++++.++ .+||+|+.||.|++||++.+ ...... ...+|...|++++|+|+
T Consensus 97 ~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~------~~~~~~----~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN------GTTSPI----IIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS------SCBCCE----EEECCSSCEEEEEECCCC---------
T ss_pred cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC------Cceeee----eeecccCccceEeecCCcccccccCCC
Confidence 3456789999874 58999999999999998532 000111 12358899999999997
Q ss_pred ---CCEEEEecCCCcEEEEECCCCc----eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 508 ---GDLLLAGYADGHVTVWDVQRAS----AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 508 ---G~~LasG~~dG~I~lWDl~~g~----~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+.+||+|+.||+|+|||+.+++ +..++. +|..+|.+|+|+|++. ....++++..+|.|.++.
T Consensus 167 ~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~---~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVL---LRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCS---SSEEEEEEETTSCEEEEE
T ss_pred CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCC---CceEEEEEECCCcEEEEE
Confidence 5799999999999999998876 556775 8999999999998631 123455555555444443
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.02 E-value=1.4e-09 Score=131.57 Aligned_cols=118 Identities=15% Similarity=0.216 Sum_probs=81.8
Q ss_pred EEEEcCCEEEE--EeCCCcEEEEeCCCCCC-ccCcccc--eeeee-cccCCCCCCCeEEEEEcCCCCEEEEecCCCc-EE
Q 000170 449 VLAVHPSFIAV--GMSKGAIVVVPGKYSAH-HRDSMDS--KMMML-GLLGDRSPAPVTAMCFNQPGDLLLAGYADGH-VT 521 (1950)
Q Consensus 449 ~ia~s~~~IAv--Gts~G~I~vfd~k~~~~-~~d~~~~--k~~~l-~~~~~~h~~~VtsLafS~DG~~LasG~~dG~-I~ 521 (1950)
.+++++.++|+ |+.+|.|++||++.+.. ....... ..+.. .....+|.++|++|+|||||++||+|+.||+ |+
T Consensus 142 ~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 142 VCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred eEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 34445578887 68999999999853200 0000000 00000 0123569999999999999999999999999 99
Q ss_pred EEECCCCceeeeeccC-cCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 522 VWDVQRASAAKVITGE-HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~-H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
+||+.+++++.++..+ |..+|++++|+++ +..++.++++ |.|..+
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~-----~~~l~s~s~d-~~v~iw 267 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTD-----GSKLAVVSDK-WTLHVF 267 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTT-----SCEEEEEETT-CEEEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCC-----CCEEEEEECC-CEEEEE
Confidence 9999999999999744 9999999999997 3455555544 433333
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.02 E-value=1e-09 Score=130.35 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=101.3
Q ss_pred cccccCCCcEEEEEc----CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEE
Q 000170 439 AFRRDHGSPQVLAVH----PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLL 512 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s----~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~La 512 (1950)
.++.+.+.+++++.+ +++||+|+.||+|++||.+.+ ...... ...+|.++|++++|+|+ |.+||
T Consensus 52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~-------~~~~~~---~~~~h~~~V~~v~~~p~~~g~~la 121 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG-------TWEKSH---EHAGHDSSVNSVCWAPHDYGLILA 121 (316)
T ss_dssp EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS-------CCCEEE---EECCCSSCCCEEEECCTTTCSCEE
T ss_pred EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC-------cceEEE---EccCCCCceEEEEECCCCCCcEEE
Confidence 455677889999985 579999999999999998531 111111 22458899999999998 88999
Q ss_pred EecCCCcEEEEECCCCcee--eeeccCcCCCeEEEEEecCCCcc------------CCceEEEEecCCceEEEEcccccc
Q 000170 513 AGYADGHVTVWDVQRASAA--KVITGEHTSPVVHTLFLGQDSQV------------TRQFKAVTGDTKGLVQLHSLSVVP 578 (1950)
Q Consensus 513 sG~~dG~I~lWDl~~g~~l--~tl~~~H~~~I~~v~F~~d~~~~------------~~~~~~vssD~~G~V~~h~ft~~r 578 (1950)
+|+.||+|++||+.++... .....+|...|..++|.++...+ ... .++++..+| .++
T Consensus 122 sgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~--------~v~ 192 (316)
T 3bg1_A 122 CGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIK-RFASGGCDN--------LIK 192 (316)
T ss_dssp EECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCC-BEECCBTTS--------BCC
T ss_pred EEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccc-eEEEecCCC--------eEE
Confidence 9999999999999886422 22334899999999999863210 012 344444443 256
Q ss_pred cccceee---eEEeecCCCccccEEEeec
Q 000170 579 LLNRFSI---KTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 579 l~~~~t~---~s~~ll~g~~~g~Vla~sp 604 (1950)
+|+.... .....|.| |.+.|.+++-
T Consensus 193 lWd~~~~~~~~~~~~l~~-h~~~V~~v~~ 220 (316)
T 3bg1_A 193 LWKEEEDGQWKEEQKLEA-HSDWVRDVAW 220 (316)
T ss_dssp EEEECTTSCEEEEECCBC-CSSCEEEEEC
T ss_pred EEEeCCCCccceeeeccc-CCCceEEEEe
Confidence 6654222 34556788 8888855444
No 97
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=7.4e-09 Score=123.93 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=92.9
Q ss_pred CCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEecCCCcEEE
Q 000170 445 GSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGYADGHVTV 522 (1950)
Q Consensus 445 G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~~dG~I~l 522 (1950)
+.+++++.++. +++|+.||.|++|+......--+-...+.+. . ....|.++|++++|+| +|.+|++|+.||+|++
T Consensus 77 ~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLR-E-IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEE-E-EECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeE-E-eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 45566666666 8999999999999864210000000111111 0 1124678999999999 9999999999999999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEE-eecCCCccccEEE
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQ-CLLDGQKTGIVLS 601 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~-~ll~g~~~g~Vla 601 (1950)
||+.++++.+.....|...|++++|+++ +. .++++..+|.|. +|+..+.+.. ..+.+.|.+.|.+
T Consensus 154 wd~~~~~~~~~~~~~~~~~i~~~~~~pd-----g~-~lasg~~dg~i~--------iwd~~~~~~~~~~~~~~h~~~v~~ 219 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKSDVEYSSGVLHKD-----SL-LLALYSPDGILD--------VYNLSSPDQASSRFPVDEEAKIKE 219 (343)
T ss_dssp EESSSSCEEEEECCCSSCCCCEEEECTT-----SC-EEEEECTTSCEE--------EEESSCTTSCCEECCCCTTSCEEE
T ss_pred EECCCCcEEEEEecCCCCceEEEEECCC-----CC-EEEEEcCCCEEE--------EEECCCCCCCccEEeccCCCCEEE
Confidence 9999999987776677789999999997 33 445445555444 4443333322 2344336777744
Q ss_pred eec
Q 000170 602 ASP 604 (1950)
Q Consensus 602 ~sp 604 (1950)
++.
T Consensus 220 l~f 222 (343)
T 3lrv_A 220 VKF 222 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.01 E-value=1.5e-09 Score=134.59 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=97.1
Q ss_pred ccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 440 FRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
+..+.+.++||++++ .+|++|+.||+|++||++.+ ... ... ....+...|++++|++||.+||+|+.
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~-------~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~ 229 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN-------ILR-VFA--SSDTINIWFCSLDVSASSRMVVTGDN 229 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC-------EEE-EEE--CCSSCSCCCCCEEEETTTTEEEEECS
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC-------cee-EEe--ccCCCCccEEEEEECCCCCEEEEEeC
Confidence 345677899999874 69999999999999998531 111 111 23446678999999999999999999
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEE---eecCC
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQ---CLLDG 593 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~---~ll~g 593 (1950)
||.|++||+. ++.+.++. +|..+|++|+|++++ .+ .++++..+|. +++|+..+.+.. ....+
T Consensus 230 dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~----~~-~~~s~s~d~~--------v~iwd~~~~~~~~~~~~~~~ 294 (435)
T 4e54_B 230 VGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCC----DW-FLATASVDQT--------VKIWDLRQVRGKASFLYSLP 294 (435)
T ss_dssp SSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTC----SS-EEEEEETTSB--------CCEEETTTCCSSSCCSBCCB
T ss_pred CCcEeeeccC-cceeEEEe-cccceEEeeeecCCC----ce-EEEEecCcce--------eeEEecccccccceEEEeee
Confidence 9999999986 55666775 999999999999872 33 4444444443 455654333321 12234
Q ss_pred CccccEEEeec
Q 000170 594 QKTGIVLSASP 604 (1950)
Q Consensus 594 ~~~g~Vla~sp 604 (1950)
|.+.|.+++-
T Consensus 295 -h~~~v~~~~~ 304 (435)
T 4e54_B 295 -HRHPVNAACF 304 (435)
T ss_dssp -CSSCEEECCB
T ss_pred -ccccccceeE
Confidence 7777755443
No 99
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=98.99 E-value=9.1e-08 Score=112.37 Aligned_cols=140 Identities=15% Similarity=0.125 Sum_probs=104.4
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
++...+.++++++++ .+|++|+.||.|++|+.... .... ....+...+.++.+++++.+|++|+.|
T Consensus 82 l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~l~s~s~d 149 (340)
T 4aow_A 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---------TTTR---RFVGHTKDVLSVAFSSDNRQIVSGSRD 149 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEE---EEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccc---------ceee---eecCCCCceeEEEEeecCccceeecCC
Confidence 344567789999875 79999999999999998431 1111 123367889999999999999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
|.|++||+...........+|...|..++|.+++ ....++++..+|.| ++|+..+.+....+.| |.+
T Consensus 150 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~s~~~d~~i--------~i~d~~~~~~~~~~~~-h~~ 216 (340)
T 4aow_A 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS----SNPIIVSCGWDKLV--------KVWNLANCKLKTNHIG-HTG 216 (340)
T ss_dssp SCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS----SSCEEEEEETTSCE--------EEEETTTTEEEEEECC-CSS
T ss_pred CeEEEEEeCCCceEEEEeccccCcccceEEccCC----CCcEEEEEcCCCEE--------EEEECCCCceeeEecC-CCC
Confidence 9999999988776655556999999999999863 34556666555544 4455445556667778 888
Q ss_pred cEEEeec
Q 000170 598 IVLSASP 604 (1950)
Q Consensus 598 ~Vla~sp 604 (1950)
.|.+++.
T Consensus 217 ~v~~~~~ 223 (340)
T 4aow_A 217 YLNTVTV 223 (340)
T ss_dssp CEEEEEE
T ss_pred cEEEEEE
Confidence 8855443
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=98.99 E-value=3.9e-08 Score=116.92 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=100.5
Q ss_pred ccccCCCcEEEEEc----CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEEE
Q 000170 440 FRRDHGSPQVLAVH----PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLLA 513 (1950)
Q Consensus 440 f~~~~G~pt~ia~s----~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~Las 513 (1950)
++...+.++|++.+ +.+||+|+.||.|++||+..+ ....+. ....|.++|++++|+|+ |.+|++
T Consensus 51 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~ 120 (379)
T 3jrp_A 51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-------RWSQIA---VHAVHSASVNSVQWAPHEYGPLLLV 120 (379)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-------EEEEEE---EECCCSSCEEEEEECCGGGCSEEEE
T ss_pred ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-------ceeEee---eecCCCcceEEEEeCCCCCCCEEEE
Confidence 44567789999986 689999999999999998431 101111 22458899999999999 999999
Q ss_pred ecCCCcEEEEECCCCcee--eeeccCcCCCeEEEEEecCCCcc-------CCceEEEEecCCceEEEEccccccccccee
Q 000170 514 GYADGHVTVWDVQRASAA--KVITGEHTSPVVHTLFLGQDSQV-------TRQFKAVTGDTKGLVQLHSLSVVPLLNRFS 584 (1950)
Q Consensus 514 G~~dG~I~lWDl~~g~~l--~tl~~~H~~~I~~v~F~~d~~~~-------~~~~~~vssD~~G~V~~h~ft~~rl~~~~t 584 (1950)
|+.||.|++||+.++... ..+ .+|...|++++|.+..... .....++++..+|.|..+.... +...
T Consensus 121 ~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~ 195 (379)
T 3jrp_A 121 ASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS----DAQT 195 (379)
T ss_dssp EETTSEEEEEECCTTSCCCEEEE-ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET----TTTE
T ss_pred ecCCCcEEEEecCCCCceeeEEe-cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC----CCcc
Confidence 999999999999988533 333 3899999999999830000 0123455555566665554321 1111
Q ss_pred eeEEeecCCCccccEEEeec
Q 000170 585 IKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 585 ~~s~~ll~g~~~g~Vla~sp 604 (1950)
......+.+ |.+.|.+++-
T Consensus 196 ~~~~~~~~~-h~~~v~~~~~ 214 (379)
T 3jrp_A 196 YVLESTLEG-HSDWVRDVAW 214 (379)
T ss_dssp EEEEEEECC-CSSCEEEEEE
T ss_pred eeeEEEEec-ccCcEeEEEE
Confidence 223445666 7777744443
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.4e-08 Score=124.91 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=93.2
Q ss_pred ccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 442 RDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 442 ~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
.+.+.++|+++++ .+||+|+.||.|++||..... .....+... . -.|.++|++|+|+++|.+||+|+.||
T Consensus 61 ~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~---~~~~~~~~~---~-~~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 61 NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEII---VGEVYSSSL---T-YDCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHH---TTCCCSCSE---E-EECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccc---cCcccceee---e-ccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 3458899999976 699999999999999974200 000000011 1 13789999999999999999999999
Q ss_pred cEEEEECC---CCceeeeecc-----------CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccccee
Q 000170 519 HVTVWDVQ---RASAAKVITG-----------EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFS 584 (1950)
Q Consensus 519 ~I~lWDl~---~g~~l~tl~~-----------~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t 584 (1950)
+|++||+. ++++.+.... +|...++++.|... .....++++..+|.|..+. ..+
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~d~~i~iwd--------~~~ 201 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN----EEKSLLVALTNLSRVIIFD--------IRT 201 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC----SSCEEEEEEETTSEEEEEE--------TTT
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc----CCCCEEEEEeCCCeEEEEe--------CCC
Confidence 99999994 6666544321 15567777775532 1224555555666555544 334
Q ss_pred eeEEeecCCC-ccccEEEeec
Q 000170 585 IKTQCLLDGQ-KTGIVLSASP 604 (1950)
Q Consensus 585 ~~s~~ll~g~-~~g~Vla~sp 604 (1950)
.+....+.+. |.+.|.+++.
T Consensus 202 ~~~~~~~~~~~h~~~v~~~~~ 222 (437)
T 3gre_A 202 LERLQIIENSPRHGAVSSICI 222 (437)
T ss_dssp CCEEEEEECCGGGCCEEEEEE
T ss_pred CeeeEEEccCCCCCceEEEEE
Confidence 4444555542 5566744443
No 102
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=98.97 E-value=1.3e-07 Score=111.89 Aligned_cols=176 Identities=15% Similarity=0.231 Sum_probs=114.0
Q ss_pred CCccccccCccccccccccCcceeeeEEecCChhH--H----HHh-----h----hccccccCCCcEEEEEcC--CEEEE
Q 000170 397 LHWKEGAAAQPMRLEGVRRGSTTLGYFDVDANNTI--T----QTI-----A----SQAFRRDHGSPQVLAVHP--SFIAV 459 (1950)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--S----~~i-----~----s~~f~~~~G~pt~ia~s~--~~IAv 459 (1950)
-+-..|+-.+++.|.|+......+ .|.+.+.. + ..| . -..+....+.+++++.++ ++||+
T Consensus 15 ~~~~~G~~~~~~~l~~h~~~v~~~---~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 15 NLYFQGSHMKAIKLTGHERPLTQV---KYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp CCCSSCCSEEEEEEECCSSCEEEE---EECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ceEEeccccccEEEEEeeceEEEE---EEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEE
Confidence 455667777788888876543332 23222211 0 000 0 112344667789999985 79999
Q ss_pred EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC-----CcEEEEECCCCcee---
Q 000170 460 GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD-----GHVTVWDVQRASAA--- 531 (1950)
Q Consensus 460 Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d-----G~I~lWDl~~g~~l--- 531 (1950)
|+.+|.|.+||+..+ +.+.. .. +.++|++++|+|+|++|++|..+ |.|.+||+.++...
T Consensus 92 ~~~dg~i~iwd~~~~---------~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 92 GSADYSIKLWDVSNG---------QCVAT---WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EETTTEEEEEETTTC---------CEEEE---EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EeCCCeEEEEECCCC---------cEEEE---ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 999999999998532 12211 11 67899999999999999999999 99999999987532
Q ss_pred --------eeeccCcCC--CeEEEEEecCCCccCCceEEEEecCCceEEEEccccccccccee-eeEEeecCCCccccEE
Q 000170 532 --------KVITGEHTS--PVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFS-IKTQCLLDGQKTGIVL 600 (1950)
Q Consensus 532 --------~tl~~~H~~--~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t-~~s~~ll~g~~~g~Vl 600 (1950)
..+. +|.. .|++++|+++ +. .++++..+|.|..+... + .+....+.+ |.+.|.
T Consensus 159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~-~l~~~~~dg~i~i~d~~--------~~~~~~~~~~~-~~~~v~ 222 (369)
T 3zwl_B 159 TKVSEEPIHKII-THEGLDAATVAGWSTK-----GK-YIIAGHKDGKISKYDVS--------NNYEYVDSIDL-HEKSIS 222 (369)
T ss_dssp EEECSSCSEEEE-CCTTCCCEEEEEECGG-----GC-EEEEEETTSEEEEEETT--------TTTEEEEEEEC-CSSCEE
T ss_pred cccccceeeecc-CCcCccceeEEEEcCC-----CC-EEEEEcCCCEEEEEECC--------CCcEeEEEEec-CCCcee
Confidence 2332 5555 9999999986 33 44555566766665542 2 233444555 666675
Q ss_pred Eeec
Q 000170 601 SASP 604 (1950)
Q Consensus 601 a~sp 604 (1950)
++..
T Consensus 223 ~~~~ 226 (369)
T 3zwl_B 223 DMQF 226 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 103
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=98.97 E-value=2.1e-09 Score=132.21 Aligned_cols=136 Identities=11% Similarity=0.171 Sum_probs=99.2
Q ss_pred cCCCcEEEEEc----CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 443 DHGSPQVLAVH----PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 443 ~~G~pt~ia~s----~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
..+.++|++.. +.+|++|+.+|.|++||++.+ +.+. ...+..|.++|++++|+|+|.+|++|+.||
T Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL---------ERLQ-IIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC---------CEEE-EEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------eeeE-EEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 45667787733 679999999999999998542 1111 112233788999999999999999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCcccc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGI 598 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~ 598 (1950)
+|++||+.++++++++..+|..+|++++|.+.-. .....++++..+|.|. +|+..+.++...+.+ |.+.
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s--~~~~~l~s~~~dg~i~--------iwd~~~~~~~~~~~~-~~~~ 305 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG--KNSVIVVGGSSKTFLT--------IWNFVKGHCQYAFIN-SDEQ 305 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC--TTEEEEEEESTTEEEE--------EEETTTTEEEEEEES-SSSC
T ss_pred eEEEEEcCCccEEEEEecCCCCceEEEEeccccC--CCccEEEEEcCCCcEE--------EEEcCCCcEEEEEEc-CCCC
Confidence 9999999999999988657888999998886411 1234666666666544 454445556666666 5544
Q ss_pred E
Q 000170 599 V 599 (1950)
Q Consensus 599 V 599 (1950)
+
T Consensus 306 ~ 306 (437)
T 3gre_A 306 P 306 (437)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.95 E-value=1.3e-09 Score=133.86 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=84.2
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--------CCCEEEEecCCCcEEEE
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--------PGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--------DG~~LasG~~dG~I~lW 523 (1950)
..+.+||+|+.|++|++||.+.+ .......+ ....+|.++|++|+|+| ||++||+|+.|++|+||
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~------~~~~~~~~-~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNE------TIITQHVL-GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETT------EEEEEEEE-CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCC------ccceeeee-cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 33468999999999999998431 10011112 24577999999999998 99999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|+.++.+...+. +|..+|++|+|+|+ +...++++..+|.|..+..
T Consensus 172 d~~~~~~~~~~~-~~~~~v~~v~~~p~-----~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 172 RLTDEGPILAGY-PLSSPGISVQFRPS-----NPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp EEETTEEEEEEE-ECSSCEEEEEEETT-----EEEEEEEEETTSEEEEEET
T ss_pred ECCCCceeeeec-CCCCCcEEEEECCC-----CCceEEecCCCCEEEEEEC
Confidence 999988777775 78899999999986 3345666666665555443
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.95 E-value=5.3e-08 Score=136.12 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=90.9
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEec
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGY 515 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~ 515 (1950)
++...+.++|+++++ ++||+|+.+|.|++||...+ +.+. ...+|.++|++++|++ ++.++++|+
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---------~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~ 720 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---------KLVH---TYDEHSEQVNCCHFTNKSNHLLLATGS 720 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEE---EEECCSSCEEEEEECSSSSCCEEEEEE
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---------ceEE---EEcCCCCcEEEEEEecCCCceEEEEEe
Confidence 345677899999985 79999999999999998532 2221 2245889999999999 566999999
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.||.|++||+.++++..++. +|..+|++++|+++ +. .++++..+|.|..+.
T Consensus 721 ~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~-----~~-~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 721 NDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPD-----DE-LLASCSADGTLRLWD 771 (1249)
T ss_dssp TTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSS-----TT-EEEEEESSSEEEEEE
T ss_pred CCCeEEEEECCCcchhheec-CCCCCEEEEEEecC-----CC-EEEEEECCCeEEEEe
Confidence 99999999999999999987 99999999999987 33 444444555444443
No 106
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.92 E-value=5.5e-09 Score=142.32 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=87.8
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..+.++|+++++ .+||+|+.||.|+|||... ..... . ..|.++|++|+|+| |++||+|+.||+|
T Consensus 16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~---------~~~~~---~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ---------VEVVI---K-LEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSEEEEECSTT---------CEEEE---E-CSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC---------cEEEE---E-cCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 456789999986 7999999999999999732 12222 1 13678999999999 8999999999999
Q ss_pred EEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 521 TVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
++||+.+++++.++. |...|++++|+++ ++ .+++++.+|.|..+..
T Consensus 82 ~lWd~~~~~~~~~~~--~~~~V~~v~~sp~-----g~-~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVF--VPGKITSIDTDAS-----LD-WMLIGLQNGSMIVYDI 127 (902)
T ss_dssp EEEETTTCSEEEEEE--CSSCEEEEECCTT-----CS-EEEEEETTSCEEEEET
T ss_pred EEEECCCCcEEEEEc--CCCCEEEEEECCC-----CC-EEEEEcCCCcEEEEEC
Confidence 999999999998884 7789999999987 33 4555556676666654
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=98.92 E-value=4.6e-08 Score=118.98 Aligned_cols=102 Identities=8% Similarity=0.053 Sum_probs=72.6
Q ss_pred CcEEEEEcC--CEEEEEe--CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 446 SPQVLAVHP--SFIAVGM--SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGt--s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.+.++++++ +++|+|+ .+|+|+|||.+.+ +.+.. . .|.+.|++|+|||||++||+|+. +.++
T Consensus 135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~---------~~~~~---~-~~~~~V~~v~fspdg~~l~s~s~-~~~~ 200 (365)
T 4h5i_A 135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDL---------TEKFE---I-ETRGEVKDLHFSTDGKVVAYITG-SSLE 200 (365)
T ss_dssp CEEEEEECTTSSCEEEEESCSSCEEEEEETTTT---------EEEEE---E-ECSSCCCEEEECTTSSEEEEECS-SCEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC---------cEEEE---e-CCCCceEEEEEccCCceEEeccc-eeEE
Confidence 356777764 7777655 6899999998531 22221 1 26788999999999999999985 5677
Q ss_pred EEECCCCceee-eeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 522 VWDVQRASAAK-VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 522 lWDl~~g~~l~-tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+|+..+++.+. ....+|...|.+|+|+++ +..++.++.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-----g~~l~~~s~d~ 241 (365)
T 4h5i_A 201 VISTVTGSCIARKTDFDKNWSLSKINFIAD-----DTVLIAASLKK 241 (365)
T ss_dssp EEETTTCCEEEEECCCCTTEEEEEEEEEET-----TEEEEEEEESS
T ss_pred EEEeccCcceeeeecCCCCCCEEEEEEcCC-----CCEEEEEecCC
Confidence 77777777653 333479999999999998 34455544443
No 108
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=98.92 E-value=1e-08 Score=127.00 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=103.2
Q ss_pred cccccCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEe
Q 000170 439 AFRRDHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG 514 (1950)
.+....+.+++++.++ .++|+|+.+|.|++||++.+. ..+.+. ....|.++|++|+|+|+|. +||+|
T Consensus 226 ~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~------~~~~~~---~~~~~~~~v~~i~~~p~~~~~l~tg 296 (430)
T 2xyi_A 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN------TSKPSH---TVDAHTAEVNCLSFNPYSEFILATG 296 (430)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC------SSSCSE---EEECCSSCEEEEEECSSCTTEEEEE
T ss_pred eecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC------CCccee---EeecCCCCeEEEEeCCCCCCEEEEE
Confidence 3445667799999975 689999999999999996420 001111 1135789999999999998 69999
Q ss_pred cCCCcEEEEECCC-CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccc------eeeeE
Q 000170 515 YADGHVTVWDVQR-ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNR------FSIKT 587 (1950)
Q Consensus 515 ~~dG~I~lWDl~~-g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~------~t~~s 587 (1950)
+.||.|++||+.+ ++++.++. +|..+|++++|+++ +..+++++..+|.|..+.......... -....
T Consensus 297 ~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 297 SADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPH-----NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp ETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSS-----CTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred eCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCC-----CCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 9999999999998 55677776 89999999999997 334455554555555555431100000 00123
Q ss_pred EeecCCCccccEEEeeccc
Q 000170 588 QCLLDGQKTGIVLSASPLL 606 (1950)
Q Consensus 588 ~~ll~g~~~g~Vla~spLp 606 (1950)
...+.| |.+.|.+++..|
T Consensus 371 ~~~~~~-h~~~v~~~~~~p 388 (430)
T 2xyi_A 371 LFIHGG-HTAKISDFSWNP 388 (430)
T ss_dssp EEECCC-CSSCEEEEEECS
T ss_pred EEEcCC-CCCCceEEEECC
Confidence 445666 777775555543
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=98.90 E-value=9.1e-09 Score=126.21 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=81.1
Q ss_pred ccccCCCcEEEEEc----------CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC
Q 000170 440 FRRDHGSPQVLAVH----------PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD 509 (1950)
Q Consensus 440 f~~~~G~pt~ia~s----------~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~ 509 (1950)
+..+.+.+++++++ +.+||+|+.|++|+|||++.+ .... ....|.++|++++|+|++.
T Consensus 132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~---------~~~~---~~~~~~~~v~~v~~~p~~~ 199 (393)
T 4gq1_A 132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE---------GPIL---AGYPLSSPGISVQFRPSNP 199 (393)
T ss_dssp TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT---------EEEE---EEEECSSCEEEEEEETTEE
T ss_pred cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC---------ceee---eecCCCCCcEEEEECCCCC
Confidence 44567889999985 368999999999999998431 1111 1124788999999999875
Q ss_pred -EEEEecCCCcEEEEECCCCceeeee------------------------ccCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 510 -LLLAGYADGHVTVWDVQRASAAKVI------------------------TGEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 510 -~LasG~~dG~I~lWDl~~g~~l~tl------------------------~~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
+|++|+.||+|++||+.+++..... ..+|...|.++.|.+.+ +. .++++.
T Consensus 200 ~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d----g~-~l~s~s 274 (393)
T 4gq1_A 200 NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSD----GS-GILAMC 274 (393)
T ss_dssp EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTT----TC-EEEEEC
T ss_pred ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCC----CC-EEEEEe
Confidence 8999999999999999988653221 13688899999998431 23 344444
Q ss_pred CCceEEEE
Q 000170 565 TKGLVQLH 572 (1950)
Q Consensus 565 ~~G~V~~h 572 (1950)
.+|.+..+
T Consensus 275 ~d~~i~vw 282 (393)
T 4gq1_A 275 KSGAWLRW 282 (393)
T ss_dssp TTSEEEEE
T ss_pred CCCCEEEE
Confidence 44444443
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=98.89 E-value=1.2e-08 Score=120.35 Aligned_cols=135 Identities=15% Similarity=0.088 Sum_probs=100.7
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCC-CCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKY-SAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~-~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~dG~I 520 (1950)
..+.+++++++++.+++|+.+|.|.+||.+. . ...... ....+..+|++++|+| ||.++++|+.||.|
T Consensus 149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~----~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE------DDNGTI----EESGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCT------TCCCEE----EECSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred eCCceEEEEecCCcEEEEeCCCeEEEEECCccc------ccccee----eecCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 4577899999998899999999999999853 1 010111 1134678999999999 99999999999999
Q ss_pred EEEECCCC------ceeeeeccCcCC---------CeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceee
Q 000170 521 TVWDVQRA------SAAKVITGEHTS---------PVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSI 585 (1950)
Q Consensus 521 ~lWDl~~g------~~l~tl~~~H~~---------~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~ 585 (1950)
++||+..+ +....+. +|.. +|++++|+++ +..++ ++..+|.|.. |+..+.
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~-~~~~dg~i~v--------wd~~~~ 283 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFR-CHRLNLKDTNLAYPVNSIEFSPR-----HKFLY-TAGSDGIISC--------WNLQTR 283 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEE-CCCCCTTCCSSCCCEEEEEECTT-----TCCEE-EEETTSCEEE--------EETTTT
T ss_pred EEEEEcCCCcccccccceeee-cccccccccccceeEEEEEEcCC-----CCEEE-EecCCceEEE--------EcCccH
Confidence 99999887 6777775 6644 9999999987 33444 4445554444 444445
Q ss_pred eEEeecCCCc-cccEEEee
Q 000170 586 KTQCLLDGQK-TGIVLSAS 603 (1950)
Q Consensus 586 ~s~~ll~g~~-~g~Vla~s 603 (1950)
+....+.+ | .+.|.+++
T Consensus 284 ~~~~~~~~-~h~~~v~~~~ 301 (342)
T 1yfq_A 284 KKIKNFAK-FNEDSVVKIA 301 (342)
T ss_dssp EEEEECCC-CSSSEEEEEE
T ss_pred hHhhhhhc-ccCCCceEec
Confidence 55666777 6 88887777
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.89 E-value=7.7e-09 Score=131.95 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=91.5
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcc---cceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSM---DSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~---~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
++.|++.++ ++||+|+.||+|++||.+.+.- ... ...++. ....+|.++|.+++||||| ||+|+.|++|
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l--~~~~~i~l~ti~--~~~~gh~~~V~sVawSPdg--Laass~D~tV 204 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE--NTPEFYFESSIR--LSDAGSKDWVTHIVWYEDV--LVAALSNNSV 204 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTT--TCCCCEEEEEEE--CSCTTCCCCEEEEEEETTE--EEEEETTCCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc--ccccceeeeeee--cccccccccEEEEEEcCCc--EEEEeCCCeE
Confidence 578888775 8999999999999999854200 000 011111 1124588999999999999 8888999999
Q ss_pred EEEECCCCce---eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeEEeecCCCccc
Q 000170 521 TVWDVQRASA---AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTG 597 (1950)
Q Consensus 521 ~lWDl~~g~~---l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g 597 (1950)
++||+.+++. .+++..+|...|.+|+|+ + +.+++++| |. +++|+..+.+...+..| |.+
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g------~~LASa~~--~t--------IkLWd~~~~~~~~~~~g-h~~ 266 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASRRKITDLKIV-D------YKVVLTCP--GY--------VHKIDLKNYSISSLKTG-SLE 266 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T------TEEEEECS--SE--------EEEEETTTTEEEEEECS-CCS
T ss_pred EEEECCCCccccceeeecccccCcEEEEEEE-C------CEEEEEeC--Ce--------EEEEECCCCeEEEEEcC-CCc
Confidence 9999998884 356755899999999999 3 35666665 43 44555433333222337 777
Q ss_pred cEEE
Q 000170 598 IVLS 601 (1950)
Q Consensus 598 ~Vla 601 (1950)
.|..
T Consensus 267 ~V~~ 270 (588)
T 2j04_A 267 NFHI 270 (588)
T ss_dssp CCCE
T ss_pred eEEE
Confidence 7743
No 112
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=98.89 E-value=4.4e-09 Score=134.81 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=94.3
Q ss_pred ccCCCcEEEEEcC--------CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeec---ccCCCCCCCeEEEEEcCCCCE
Q 000170 442 RDHGSPQVLAVHP--------SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLG---LLGDRSPAPVTAMCFNQPGDL 510 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--------~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~---~~~~~h~~~VtsLafS~DG~~ 510 (1950)
...|.+.+++.++ .+||+|+.||+|++||+..+. .......... ....+|.++|++++|++++ +
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~----~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA----TDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS----SSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc----cccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 3568889999875 499999999999999985321 0000000000 0124588999999999875 8
Q ss_pred EEEecCCCcEEEEECCCCce-eeeeccCcCCCeEEE--EEecCCCccCCceEEEEecCCceEEEEcccccccccceeeeE
Q 000170 511 LLAGYADGHVTVWDVQRASA-AKVITGEHTSPVVHT--LFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIKT 587 (1950)
Q Consensus 511 LasG~~dG~I~lWDl~~g~~-l~tl~~~H~~~I~~v--~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~s 587 (1950)
||+|+.||+|++||+.++.. ..++. +|..+|++| +|.+++ .+.++.+++++ . +|+|+..+.++
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g----~~~laS~S~D~-t--------vklWD~~~~~~ 345 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFE----DTVVSTVAVDG-Y--------FYIFNPKDIAT 345 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTS----CCEEEEEETTS-E--------EEEECGGGHHH
T ss_pred EEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCC----CeEEEEeccCC-e--------EEEEECCCCCc
Confidence 99999999999999998754 34454 999999999 455541 14555555554 2 56666544443
Q ss_pred EeecCCCcc--ccE--EEeec
Q 000170 588 QCLLDGQKT--GIV--LSASP 604 (1950)
Q Consensus 588 ~~ll~g~~~--g~V--la~sp 604 (1950)
...+.| |. +.| ++++|
T Consensus 346 ~~~~~~-~~~~~~v~~v~fsp 365 (524)
T 2j04_B 346 TKTTVS-RFRGSNLVPVVYCP 365 (524)
T ss_dssp HCEEEE-ECSCCSCCCEEEET
T ss_pred cccccc-ccccCcccceEeCC
Confidence 334444 32 234 66766
No 113
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=98.87 E-value=1.8e-08 Score=119.06 Aligned_cols=80 Identities=13% Similarity=0.168 Sum_probs=65.1
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEE--cCCCCEEEEe
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCF--NQPGDLLLAG 514 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLaf--S~DG~~LasG 514 (1950)
.+....+.+++++.++ .+||+|+.+|.|++||+..+ +.... ..|.++|++++| +++|.+|++|
T Consensus 81 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---------~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~ 147 (368)
T 3mmy_A 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN---------QAIQI----AQHDAPVKTIHWIKAPNYSCVMTG 147 (368)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEE----EECSSCEEEEEEEECSSCEEEEEE
T ss_pred EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC---------Cceee----ccccCceEEEEEEeCCCCCEEEEc
Confidence 3445678899999975 69999999999999998531 22221 237899999999 9999999999
Q ss_pred cCCCcEEEEECCCCcee
Q 000170 515 YADGHVTVWDVQRASAA 531 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l 531 (1950)
+.||.|++||+.+++++
T Consensus 148 ~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp ETTSEEEEECSSCSSCS
T ss_pred cCCCcEEEEECCCCcEE
Confidence 99999999999887643
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=98.85 E-value=1.7e-08 Score=121.83 Aligned_cols=159 Identities=12% Similarity=0.017 Sum_probs=99.0
Q ss_pred cceeeeEEecCChhHHHHhhhccccccCCCcEEEEE---cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCC
Q 000170 417 STTLGYFDVDANNTITQTIASQAFRRDHGSPQVLAV---HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD 493 (1950)
Q Consensus 417 ~~~~~~~~~~~~~~iS~~i~s~~f~~~~G~pt~ia~---s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~ 493 (1950)
...+..+.+.+..++ +.+...........++++ .+.+||+|+.||+|+|||.+.+ +..+ .+. .+.
T Consensus 156 d~~V~~~~~s~dG~~---~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------k~l~--tL~-g~~ 223 (356)
T 2w18_A 156 DQQVEVMTFAEDGGG---KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG------QLLK--KMH-IDD 223 (356)
T ss_dssp TCEEEEEEECTTSCE---EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC------CEEE--EEE-CCC
T ss_pred CCcEEEEEECCCCce---eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC------cEEE--EEc-CCC
Confidence 455556666443322 112222223334455666 3489999999999999999653 1111 111 122
Q ss_pred CCCCCeEEEEEcCCCCEE------------EEecCCCcEEEEECCCCceeeee----ccCcCCCeEEEEEecCCCccCCc
Q 000170 494 RSPAPVTAMCFNQPGDLL------------LAGYADGHVTVWDVQRASAAKVI----TGEHTSPVVHTLFLGQDSQVTRQ 557 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~L------------asG~~dG~I~lWDl~~g~~l~tl----~~~H~~~I~~v~F~~d~~~~~~~ 557 (1950)
.+...|.+++|||||.++ |+|+.|++|++||..+|++++++ .++|...+.+..|.+ .
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg-------~ 296 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKD-------H 296 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEET-------T
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCC-------C
Confidence 245689999999999987 67889999999999999988766 358877776666652 2
Q ss_pred eEEEEecCCceEEEEcccccccccceeeeEEeecCCCccccE---EEeec
Q 000170 558 FKAVTGDTKGLVQLHSLSVVPLLNRFSIKTQCLLDGQKTGIV---LSASP 604 (1950)
Q Consensus 558 ~~~vssD~~G~V~~h~ft~~rl~~~~t~~s~~ll~g~~~g~V---la~sp 604 (1950)
.++++..+| + +|+|+..++++..+|.| |...| ++|+|
T Consensus 297 -~lASgS~Dg-------T-IkIWDl~tGk~l~tL~g-H~~~vvs~vafSP 336 (356)
T 2w18_A 297 -CAAAILTSG-------T-IAIWDLLLGQCTALLPP-VSDQHWSFVKWSG 336 (356)
T ss_dssp -EEEEEETTS-------C-EEEEETTTCSEEEEECC-C--CCCCEEEECS
T ss_pred -EEEEEcCCC-------c-EEEEECCCCcEEEEecC-CCCCeEEEEEECC
Confidence 344443333 3 77888878888888988 65543 56777
No 115
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=98.84 E-value=9.1e-09 Score=121.58 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=89.5
Q ss_pred ccCCCcEEEEEcC-----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEec
Q 000170 442 RDHGSPQVLAVHP-----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGY 515 (1950)
Q Consensus 442 ~~~G~pt~ia~s~-----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~ 515 (1950)
...+.+++++.++ .++++|+.+|.|.+||.+.+ .....+.. .....|.++|++++|+|+|. +|++|+
T Consensus 207 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 207 NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ------HPTKGFAS-VSEKAHKSTVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE------ETTTEEEE-EEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC------Ccccceee-eccCCCcCCEEEEEECCCCCcEEEEEe
Confidence 3456789999874 89999999999999998531 11111110 01125889999999999999 899999
Q ss_pred CCCcEEEEECCCCc-------------------eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 516 ADGHVTVWDVQRAS-------------------AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~-------------------~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.||.|++||+.++. ++.++. +|..+|++++|+++ +..+++++..+|.|..+.+
T Consensus 280 ~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~-----~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 280 GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPD-----KRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSS-----STTEEEEEETTSEEEEEEE
T ss_pred CCCcEEEeecCCCcccccccCCCCccccccccceeeccc-cCCCCeeEEEEcCC-----CCeEEEEecCCCcEEEEEC
Confidence 99999999998653 455565 89999999999997 4566656666666655554
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=98.84 E-value=3.2e-08 Score=118.93 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=84.3
Q ss_pred CCCcEEEEEcC-----CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE-EEEecCC
Q 000170 444 HGSPQVLAVHP-----SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL-LLAGYAD 517 (1950)
Q Consensus 444 ~G~pt~ia~s~-----~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~-LasG~~d 517 (1950)
.+.+.+++..+ .++++|+.+|.|.+||++.+ +... ....|.++|++++|+|+|.+ |++|+.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---------~~~~---~~~~~~~~v~~~~~~~~~~~ll~~~~~d 208 (408)
T 4a11_B 141 EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---------SCSH---ILQGHRQEILAVSWSPRYDYILATASAD 208 (408)
T ss_dssp SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---------CCCE---EECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---------ceee---eecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence 44567777764 38999999999999998532 1111 22458899999999999995 9999999
Q ss_pred CcEEEEECCCCc-eeeeec--------------cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 518 GHVTVWDVQRAS-AAKVIT--------------GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 518 G~I~lWDl~~g~-~l~tl~--------------~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
|.|++||+.++. ++..+. .+|...|++++|+++ +. .++++..+|.|..+...
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~-~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-----GL-HLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-----SS-EEEEEETTSCEEEEETT
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-----CC-EEEEecCCCeEEEEECC
Confidence 999999998876 333331 378999999999987 33 34455555666666643
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.4e-08 Score=126.41 Aligned_cols=114 Identities=8% Similarity=0.019 Sum_probs=86.9
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC---CCEEEEecCCC
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP---GDLLLAGYADG 518 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D---G~~LasG~~dG 518 (1950)
.+.++++++++ .+|++|+.+|.|.+|++..+ .... ... ....+|.++|++|+|+|| |.+|++|+.||
T Consensus 149 ~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~------~~~~-~~~-~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~ 220 (450)
T 2vdu_B 149 SKRPNAISIAEDDTTVIIADKFGDVYSIDINSI------PEEK-FTQ-EPILGHVSMLTDVHLIKDSDGHQFIITSDRDE 220 (450)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------CCSS-CCC-CCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCcEEEEecCCc------cccc-ccc-eeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence 46689999875 79999999999999998532 1000 000 022348899999999999 99999999999
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
+|++||+.+++++.++..+|..+|++++|+ + +..++.++ .+|.|..+
T Consensus 221 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d-----~~~l~s~~-~d~~v~vw 267 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKWLFGHKHFVSSICCG-K-----DYLLLSAG-GDDKIFAW 267 (450)
T ss_dssp CEEEEEESCTTCEEEECCCCSSCEEEEEEC-S-----TTEEEEEE-SSSEEEEE
T ss_pred cEEEEECCCCceeeeeecCCCCceEEEEEC-C-----CCEEEEEe-CCCeEEEE
Confidence 999999999999888656999999999999 6 34455444 44444333
No 118
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=98.82 E-value=2.6e-08 Score=122.78 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=88.8
Q ss_pred cccCCCcEEEEEcC---CEEEE--EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 441 RRDHGSPQVLAVHP---SFIAV--GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~---~~IAv--Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
....+.+.+++.++ .++++ |+.||+|++||...+ ++... -.+...|++++|++++..|++|+
T Consensus 273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~----~~~~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---------ACLSA----VDAHSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---------EEEEE----EECSSCEEEEEEETTTTEEEEEE
T ss_pred cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---------cccee----eccccceeeeeecCCCCeEEEEE
Confidence 44567788998875 56665 457999999998542 22211 11356899999999999998754
Q ss_pred --CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccceeee
Q 000170 516 --ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRFSIK 586 (1950)
Q Consensus 516 --~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~t~~ 586 (1950)
.||.|+|||+.+++++.++. ||..+|++|+|+++ +..++.+++|+ + +|+|+.+...
T Consensus 340 g~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spd-----g~~l~S~s~D~--------t-vriWdv~~~~ 397 (420)
T 4gga_A 340 GFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPD-----GATVASAAADE--------T-LRLWRCFELD 397 (420)
T ss_dssp CTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTT-----SSCEEEEETTT--------E-EEEECCSCSS
T ss_pred ecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCC-----CCEEEEEecCC--------e-EEEEECCCCC
Confidence 89999999999999999997 99999999999997 34556555554 2 6677765443
No 119
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.82 E-value=1.1e-08 Score=128.06 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=85.5
Q ss_pred CCcEEEEEcC--CEEE----EEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEecCC
Q 000170 445 GSPQVLAVHP--SFIA----VGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAGYAD 517 (1950)
Q Consensus 445 G~pt~ia~s~--~~IA----vGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG~~d 517 (1950)
+.+++++.++ ++|| +|+.+|.|+|||+..+.. ......+.+.......+|.++|++|+|+|+ +.+||+|+.|
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN-EAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHC-TTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccccc-CCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 4589999885 7899 678899999999742100 000000000000133568899999999998 8999999999
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|+|++||+.++....... +|...|++++|+++ +..+++++ .+|.|..+.
T Consensus 172 g~v~iwD~~~~~~~~~~~-~~~~~v~~v~wspd-----g~~lasgs-~dg~v~iwd 220 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATL-PSTVAVTSVCWSPK-----GKQLAVGK-QNGTVVQYL 220 (434)
T ss_dssp SCEEEEEESSSEEEEEEE-CGGGCEEEEEECTT-----SSCEEEEE-TTSCEEEEC
T ss_pred CeEEEEEcCCCcceeecc-CCCCceeEEEEcCC-----CCEEEEEc-CCCcEEEEc
Confidence 999999999997765554 79999999999997 34455544 455555544
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.1e-08 Score=132.26 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=101.4
Q ss_pred cccccCCCcEEEEEc----CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC--CCEEE
Q 000170 439 AFRRDHGSPQVLAVH----PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP--GDLLL 512 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s----~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D--G~~La 512 (1950)
.+..+.+.++|++++ +++|++|+.||.|++||+..+ ...... ....|.++|++++|+|+ |.+++
T Consensus 48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-------~~~~~~---~~~~h~~~V~~v~~sp~~~~~~l~ 117 (753)
T 3jro_A 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-------RWSQIA---VHAVHSASVNSVQWAPHEYGPLLL 117 (753)
T ss_dssp EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-------EEEEEE---EECCCSSCEEEEEECCGGGCSEEE
T ss_pred eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-------cccccc---cccCCCCCeEEEEECCCCCCCEEE
Confidence 345567889999986 679999999999999998431 111111 23458899999999999 99999
Q ss_pred EecCCCcEEEEECCCCce--eeeeccCcCCCeEEEEEecCCCcc--------CCceEEEEecCCceEEEEcccccccccc
Q 000170 513 AGYADGHVTVWDVQRASA--AKVITGEHTSPVVHTLFLGQDSQV--------TRQFKAVTGDTKGLVQLHSLSVVPLLNR 582 (1950)
Q Consensus 513 sG~~dG~I~lWDl~~g~~--l~tl~~~H~~~I~~v~F~~d~~~~--------~~~~~~vssD~~G~V~~h~ft~~rl~~~ 582 (1950)
+|+.||.|++||+.++.. ...+ .+|...|++++|.+..... .+. .++++..+|.|..+.... +.
T Consensus 118 sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~----~~ 191 (753)
T 3jro_A 118 VASSDGKVSVVEFKENGTTSPIII-DAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNS----DA 191 (753)
T ss_dssp EEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEET----TT
T ss_pred EEeCCCcEEEEEeecCCCcceeEe-ecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccC----Cc
Confidence 999999999999998843 2334 4899999999999830000 023 344454556555554321 11
Q ss_pred eeeeEEeecCCCccccEEEeec
Q 000170 583 FSIKTQCLLDGQKTGIVLSASP 604 (1950)
Q Consensus 583 ~t~~s~~ll~g~~~g~Vla~sp 604 (1950)
........+.+ |.+.|.+++-
T Consensus 192 ~~~~~~~~~~~-h~~~V~~l~~ 212 (753)
T 3jro_A 192 QTYVLESTLEG-HSDWVRDVAW 212 (753)
T ss_dssp TEEEEEEEECC-CSSCEEEEEE
T ss_pred ccceeeeeecC-CCCcEEEEEe
Confidence 11234456677 8888854444
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=98.75 E-value=6.8e-08 Score=116.75 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=64.5
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCc-EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGA-IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~-I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
.++.+.+.++|+++++ .+||+|+.||+ |++||.+.+ +++.. .....|.++|++++|||||++||+|+
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---------~~~~~-~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---------VLVRE-FRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---------CEEEE-EECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---------cEEEE-EEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 3455677899999986 79999999998 999998542 22210 01112889999999999999999999
Q ss_pred CCCcEEEEECCCCc
Q 000170 516 ADGHVTVWDVQRAS 529 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~ 529 (1950)
.||+|++||+.++.
T Consensus 260 ~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 260 DKWTLHVFEIFNDQ 273 (355)
T ss_dssp TTCEEEEEESSCCS
T ss_pred CCCEEEEEEccCCC
Confidence 99999999998764
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.73 E-value=7e-07 Score=109.24 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=88.2
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
.+.|.++++++ .++++|+.+|.|.+||...+ +...........+|.+.|++++|+++|.++++|+.||.|+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSG-------QTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTC-------CEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCC-------eEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 34567777764 56777778889999998532 1111110001235888999999999999999999999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+||+.+++++.++. .|...|.+++|.++ +..+++++..+|.|+.+..
T Consensus 195 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 195 VFDLKTLAYKATVD-LTGKWSKILLYDPI-----RDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp EEETTTCCEEEEEE-CSSSSEEEEEEETT-----TTEEEEEETTTTEEEEEET
T ss_pred EEECCCceEEEEEc-CCCCCeeEEEEcCC-----CCEEEEEecCCCcEEEEEC
Confidence 99999999988886 89999999999987 4456666656666655543
No 123
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=98.68 E-value=1.3e-07 Score=110.01 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=85.6
Q ss_pred cccCCCcEEEEEcC---C--EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-
Q 000170 441 RRDHGSPQVLAVHP---S--FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG- 514 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~---~--~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG- 514 (1950)
....|.+.+++..+ . .++.|+.+|.|++||.... .... ...+...|.+++|++++..++++
T Consensus 193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---------~~~~----~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---------ACLS----AVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---------CEEE----EEECSSCEEEEEEETTTTEEEEEE
T ss_pred cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---------cccc----cccceeeeeeeeecccccceEEEE
Confidence 34556778887765 3 3567888999999998531 1111 11256789999999999988764
Q ss_pred -cCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcccccccccce
Q 000170 515 -YADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLSVVPLLNRF 583 (1950)
Q Consensus 515 -~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft~~rl~~~~ 583 (1950)
+.||.|++||+.++++++++. +|..+|++|+|+++ +..++.+++++ . +++|+.+
T Consensus 260 g~~d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spd-----g~~l~S~s~D~-~--------v~iWd~~ 314 (318)
T 4ggc_A 260 GFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPD-----GATVASAAADE-T--------LRLWRCF 314 (318)
T ss_dssp CTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTT-----SSCEEEEETTT-E--------EEEECCS
T ss_pred EcCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCC-----CCEEEEEecCC-e--------EEEEECC
Confidence 589999999999999999997 99999999999997 34555555553 2 5667644
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.63 E-value=8.8e-06 Score=98.06 Aligned_cols=112 Identities=9% Similarity=0.128 Sum_probs=83.2
Q ss_pred cCCCcEEEEEcC--CEE-EEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEE-EecCCC
Q 000170 443 DHGSPQVLAVHP--SFI-AVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLL-AGYADG 518 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~I-AvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~La-sG~~dG 518 (1950)
..+.|+++++++ .+| ++|+.+|.|.+||...+ +.... .. +.+.|++++|+|||++|+ +|+.+|
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---------~~~~~-~~---~~~~v~~~~~spdg~~l~~~~~~~~ 96 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------NVIAT-VP---AGSSPQGVAVSPDGKQVYVTNMASS 96 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---------EEEEE-EE---CSSSEEEEEECTTSSEEEEEETTTT
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC---------eEEEE-EE---CCCCccceEECCCCCEEEEEECCCC
Confidence 345689999986 566 67778999999998532 21211 11 234899999999999884 666789
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.|++||+.+++.+..+. +...+.+++|+++ +..+++++..+|.|+.+..
T Consensus 97 ~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~d-----g~~l~~~~~~~~~v~~~d~ 145 (391)
T 1l0q_A 97 TLSVIDTTSNTVAGTVK--TGKSPLGLALSPD-----GKKLYVTNNGDKTVSVINT 145 (391)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSEEEEEECTT-----SSEEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCeEEEEEe--CCCCcceEEECCC-----CCEEEEEeCCCCEEEEEEC
Confidence 99999999999988775 3457899999987 4556677777777766654
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.55 E-value=1.2e-05 Score=96.74 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=75.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG~~dG~I~lWDl~~g~~l~t 533 (1950)
..+++|+.+|.|.+||...+ +.+.. .. +...|++++|+|||++| ++|+.||+|++||+.++++++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~---------~~~~~---~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~ 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN---------KVTAT---IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT---------EEEEE---EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCC---------eEEEE---ee-cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE
Confidence 35788999999999998531 22211 11 23469999999999987 7888999999999999999988
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+. .|. .|.+++|+++ +..+++++...|.|+.+..
T Consensus 70 ~~-~~~-~v~~~~~spd-----g~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 70 VP-AGS-SPQGVAVSPD-----GKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp EE-CSS-SEEEEEECTT-----SSEEEEEETTTTEEEEEET
T ss_pred EE-CCC-CccceEECCC-----CCEEEEEECCCCEEEEEEC
Confidence 86 333 9999999997 4566677766666665554
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=98.54 E-value=2.6e-07 Score=111.60 Aligned_cols=95 Identities=9% Similarity=0.113 Sum_probs=62.5
Q ss_pred EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeecc
Q 000170 457 IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITG 536 (1950)
Q Consensus 457 IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~ 536 (1950)
+|+|+.|++|++||.+.+ .......+. ..++|.+.+.+.+++ |.++|+|+.||+|+|||+.+|++++++.
T Consensus 253 laSGs~D~tIklWd~~tg------k~l~v~~~~-~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~- 322 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTT------LSVGVMLYC-LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP- 322 (356)
T ss_dssp -----CCEEEEEEETTTT------EEEEEEEEC-CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-
T ss_pred eeccCCCcEEEEEECCCC------EEEEEEEee-ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-
Confidence 578999999999998542 111111111 124566666655554 9999999999999999999999999997
Q ss_pred CcCCCeE-EEEEecCCCccCCceEEEEecCC
Q 000170 537 EHTSPVV-HTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 537 ~H~~~I~-~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+|...|+ .++|+|| +..++.+++++
T Consensus 323 gH~~~vvs~vafSPD-----G~~LaSGS~D~ 348 (356)
T 2w18_A 323 PVSDQHWSFVKWSGT-----DSHLLAGQKDG 348 (356)
T ss_dssp CC--CCCCEEEECSS-----SSEEEEECTTS
T ss_pred CCCCCeEEEEEECCC-----CCEEEEEECCC
Confidence 7766555 6899997 45556555554
No 127
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=98.50 E-value=4.3e-07 Score=113.56 Aligned_cols=107 Identities=25% Similarity=0.380 Sum_probs=79.4
Q ss_pred cCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+.+.+++++.++ .+||+|+.||+|++||++.+ .... . ...|...|++++|||||++||+|+.||+
T Consensus 148 h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~---------~~~~-~--~~~~~~~v~~v~wspdg~~lasgs~dg~ 215 (434)
T 2oit_A 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET---------VKVC-A--TLPSTVAVTSVCWSPKGKQLAVGKQNGT 215 (434)
T ss_dssp GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS---------EEEE-E--EECGGGCEEEEEECTTSSCEEEEETTSC
T ss_pred CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC---------ccee-e--ccCCCCceeEEEEcCCCCEEEEEcCCCc
Confidence 456689999975 58999999999999998642 1121 1 1236789999999999999999999999
Q ss_pred EEEEECCCCceeeeecc------CcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 520 VTVWDVQRASAAKVITG------EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~------~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
|++||+. ++..+++.. .|...|.++.|+++ ...+++.+...|
T Consensus 216 v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~-----~~~l~~~~~~dg 263 (434)
T 2oit_A 216 VVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT-----YVFAIVYAAADG 263 (434)
T ss_dssp EEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET-----TEEEEEEEETTC
T ss_pred EEEEccC-CcccccccCCcccCCCCceeEEEEEEecC-----ceEEEEEccCCC
Confidence 9999998 666555531 23348999999985 344444443333
No 128
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.50 E-value=1.5e-05 Score=97.53 Aligned_cols=116 Identities=11% Similarity=0.086 Sum_probs=85.5
Q ss_pred ccccCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEecC
Q 000170 440 FRRDHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAGYA 516 (1950)
Q Consensus 440 f~~~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG~~ 516 (1950)
+....+.+++++++ +.++++|+.+|.|.+||.+.+ +.+. ....|...|++++|+|||.+| ++|+.
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL---------AYKA---TVDLTGKWSKILLYDPIRDLVYCSNWI 232 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC---------CEEE---EEECSSSSEEEEEEETTTTEEEEEETT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc---------eEEE---EEcCCCCCeeEEEEcCCCCEEEEEecC
Confidence 34566778899885 478999999999999998531 1111 112467889999999999988 57778
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEec-------CCceEEEEcc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGD-------TKGLVQLHSL 574 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD-------~~G~V~~h~f 574 (1950)
+|.|++||+.+++.+..+. .| ..+.+++|+++ +..+++++. .+|.|+.+..
T Consensus 233 ~~~i~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~-----g~~l~~~~~~~~~~~~~dg~i~~~d~ 290 (433)
T 3bws_A 233 SEDISVIDRKTKLEIRKTD-KI-GLPRGLLLSKD-----GKELYIAQFSASNQESGGGRLGIYSM 290 (433)
T ss_dssp TTEEEEEETTTTEEEEECC-CC-SEEEEEEECTT-----SSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred CCcEEEEECCCCcEEEEec-CC-CCceEEEEcCC-----CCEEEEEECCCCccccCCCeEEEEEC
Confidence 9999999999999888775 33 45999999987 345555553 3455555543
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.35 E-value=6.5e-05 Score=92.96 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=72.0
Q ss_pred CCEEEEEeCC------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC---cEEEEE
Q 000170 454 PSFIAVGMSK------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG---HVTVWD 524 (1950)
Q Consensus 454 ~~~IAvGts~------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG---~I~lWD 524 (1950)
+..||.++.+ +.|.+||... ..... + ..|.+.|++++|||||++||+++.++ .|++||
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-------~~~~~-l-----~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d 209 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-------YNQFV-V-----HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQT 209 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-------CSCEE-E-----EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-------CCCEE-E-----eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEE
Confidence 4556665554 7999999842 11121 1 23678899999999999999999886 999999
Q ss_pred CCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc--eEEEEc
Q 000170 525 VQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG--LVQLHS 573 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G--~V~~h~ 573 (1950)
+.+|++.. +. .|...|.+++|+|| +..+++++..+| .||.+.
T Consensus 210 ~~tg~~~~-l~-~~~~~~~~~~~spd-----g~~la~~~~~~g~~~i~~~d 253 (415)
T 2hqs_A 210 LANGAVRQ-VA-SFPRHNGAPAFSPD-----GSKLAFALSKTGSLNLYVMD 253 (415)
T ss_dssp TTTCCEEE-EE-CCSSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEE
T ss_pred CCCCcEEE-ee-cCCCcccCEEEcCC-----CCEEEEEEecCCCceEEEEE
Confidence 99998754 43 78889999999998 445665554433 355444
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=98.32 E-value=9.3e-06 Score=100.52 Aligned_cols=113 Identities=21% Similarity=0.161 Sum_probs=84.4
Q ss_pred cccCCCcEEEEEcC--CEEEEEeCCC---cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEE-Ee
Q 000170 441 RRDHGSPQVLAVHP--SFIAVGMSKG---AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLL-AG 514 (1950)
Q Consensus 441 ~~~~G~pt~ia~s~--~~IAvGts~G---~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~La-sG 514 (1950)
....+.+.+++.++ ++||.++.++ .|.+||.+.+ +...+ ..+.+.|.+++|||||++|| ++
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---------~~~~l----~~~~~~~~~~~~spdg~~la~~~ 241 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------AVRQV----ASFPRHNGAPAFSPDGSKLAFAL 241 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------CEEEE----ECCSSCEEEEEECTTSSEEEEEE
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---------cEEEe----ecCCCcccCEEEcCCCCEEEEEE
Confidence 34556788888875 7899998875 9999998532 11222 23567899999999999998 77
Q ss_pred cCCCc--EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc--eEEEEc
Q 000170 515 YADGH--VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG--LVQLHS 573 (1950)
Q Consensus 515 ~~dG~--I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G--~V~~h~ 573 (1950)
+.+|. |.+||+.++++ ..+. .|...+.+++|++| +..++++++.+| .+|.+.
T Consensus 242 ~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~spd-----g~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 242 SKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWFPD-----SQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp CTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEECTT-----SSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCceEEEEECCCCCE-EeCc-CCCCcccceEECCC-----CCEEEEEECCCCCcEEEEEE
Confidence 77766 99999999887 4554 78889999999998 456777776655 344433
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=98.24 E-value=9.3e-05 Score=83.98 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=64.0
Q ss_pred EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC-CceeeeeccCc
Q 000170 460 GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR-ASAAKVITGEH 538 (1950)
Q Consensus 460 Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~-g~~l~tl~~~H 538 (1950)
+..++.|.+||...+ +...+ ..|.+.|++++|||||++||++. +|.|.+||+.+ ++........+
T Consensus 18 ~~~~~~i~~~d~~~~---------~~~~~----~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTR---------KMRVV----WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp CCCCEEEEEEETTTT---------EEEEE----EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC
T ss_pred CCcceeEEEEeCCCC---------ceeee----ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc
Confidence 457899999998531 11111 12578899999999999999997 89999999999 88776665333
Q ss_pred CCCeEEEEEecCCCccCCceEEEEe
Q 000170 539 TSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 539 ~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
...|.+++|+++ ++.+++++
T Consensus 84 ~~~~~~~~~spd-----g~~l~~~~ 103 (297)
T 2ojh_A 84 TICNNDHGISPD-----GALYAISD 103 (297)
T ss_dssp CCBCSCCEECTT-----SSEEEEEE
T ss_pred cccccceEECCC-----CCEEEEEE
Confidence 578999999997 34555555
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=98.21 E-value=5.7e-05 Score=99.55 Aligned_cols=111 Identities=9% Similarity=0.076 Sum_probs=78.6
Q ss_pred CCCcEEEEEcC--CEEEEEeC-CC-----cEEEEeCCCCCCccCcccceeeeecccCCCCC-------------------
Q 000170 444 HGSPQVLAVHP--SFIAVGMS-KG-----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSP------------------- 496 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts-~G-----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~------------------- 496 (1950)
.+.++++++++ ++||.++. +| .|.+||...+ ....+. ....+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG-------QTRLLV---DSKVVLPGTETLSDEEKARRERQRI 105 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC-------CEEEEE---CGGGTC-------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC-------ceeEcc---chhhcccccccccchhhhhhhhhhh
Confidence 45678888875 79999988 88 8999998542 111111 111111
Q ss_pred ---CCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 497 ---APVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 497 ---~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
..|++++|||||++||+++. |+|.+||+.++. ..+.+. .|...|.+++|+|| +..++.+++. .|+.
T Consensus 106 ~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPD-----G~~la~~~~~--~i~~ 176 (741)
T 2ecf_A 106 AAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPK-----GGFVSFIRGR--NLWV 176 (741)
T ss_dssp -CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTT-----SSEEEEEETT--EEEE
T ss_pred ccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-cCCcccccccCCCC-----CCEEEEEeCC--cEEE
Confidence 34899999999999999997 999999999983 334454 78889999999998 4456666653 3444
Q ss_pred Ec
Q 000170 572 HS 573 (1950)
Q Consensus 572 h~ 573 (1950)
+.
T Consensus 177 ~d 178 (741)
T 2ecf_A 177 ID 178 (741)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.97 E-value=0.00064 Score=79.43 Aligned_cols=116 Identities=15% Similarity=0.190 Sum_probs=75.4
Q ss_pred cCCCcEEEEEcC--CEEEEEeCC-CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe-cCCC
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSK-GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG-YADG 518 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~-G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG-~~dG 518 (1950)
..+.|.++++++ ++|++++.+ |.|.+|++... ....+.+. ... ..+.+.+++|+|||++|+++ +.+|
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~-----~~~~~~~~---~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD-----DGALTFAA---ESA-LPGSLTHISTDHQGQFVFVGSYNAG 106 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT-----TCCEEEEE---EEE-CSSCCSEEEECTTSSEEEEEETTTT
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC-----CCceeecc---ccc-cCCCCcEEEEcCCCCEEEEEecCCC
Confidence 455688888864 788888887 99999998410 01111111 111 12378999999999987655 5589
Q ss_pred cEEEEEC---CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 519 HVTVWDV---QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 519 ~I~lWDl---~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.|.+||+ .+++....+. + ...+..++|+++ +..+++++-..|.|+.+..
T Consensus 107 ~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~s~d-----g~~l~~~~~~~~~v~~~d~ 158 (343)
T 1ri6_A 107 NVSVTRLEDGLPVGVVDVVE-G-LDGCHSANISPD-----NRTLWVPALKQDRICLFTV 158 (343)
T ss_dssp EEEEEEEETTEEEEEEEEEC-C-CTTBCCCEECTT-----SSEEEEEEGGGTEEEEEEE
T ss_pred eEEEEECCCCcccccccccc-C-CCCceEEEECCC-----CCEEEEecCCCCEEEEEEe
Confidence 9999999 4445555553 3 346889999997 3455655535555555443
No 134
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.95 E-value=0.02 Score=79.25 Aligned_cols=111 Identities=18% Similarity=0.301 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhcCCccchHHHHHHHHHhcCchhhHHHhhHHHHhcCCCC--CCCHHHHHHHHHHHHhcCcHHHHHH
Q 000170 937 QFTRVGGVAVEFCVHINRTDILFDDIFSKFEAVQHRDTFLELLEPYILKDMLG--SLPPEIMQALVEHYSSKGWLQRVEQ 1014 (1950)
Q Consensus 937 ~~~~l~~~~iefCl~i~~~D~LF~~if~~f~~~~~~~iFle~LEp~IL~g~I~--~lPP~I~q~lv~~y~~~g~l~~lE~ 1014 (1950)
.++-++.+|.+|--.+|-..++ ++|+.|. ..++.|+- | |.|- +=.|+|.-++|+-..+.|....+|+
T Consensus 678 nlq~vvqva~ky~~~lg~~~li--~~fe~~~--~~egl~y~-l------~siv~~s~d~~vhfkyi~aa~~~~q~~ever 746 (1630)
T 1xi4_A 678 NLQICVQVASKYHEQLSTQSLI--ELFESFK--SFEGLFYF-L------GSIVNFSQDPDVHFKYIQAACKTGQIKEVER 746 (1630)
T ss_pred hhhhhhhHHHHHHhhcCHHHHH--HHHHHhc--chhhHHHH-H------HhhccccCChHHHHHHHHHHHHhCCchhhhH
Confidence 3556778888887777755443 4566554 34555543 2 2333 2359999999999999999999999
Q ss_pred HHhccCCCCCCHHHHHHHHHHhcccc--hhhHHhhcccCCchhHHHHHHH
Q 000170 1015 CVLHMDISSLDFNQVVRLCREHGLHG--ALVYLFNKGLDDFRAPLEELLV 1062 (1950)
Q Consensus 1015 ~Il~LD~~sLDidqvi~LC~e~~Lyd--aLIYI~n~~l~DYvTPL~eLl~ 1062 (1950)
+.- |-.+.|...|-.++++-+|-| +||+||.| .||+.-|+..|.
T Consensus 747 i~r--es~~y~~e~vk~flk~~kl~d~~pli~vCdr--~~~v~~l~~yLy 792 (1630)
T 1xi4_A 747 ICR--ESNCYDPERVKNFLKEAKLTDQLPLIIVCDR--FDFVHDLVLYLY 792 (1630)
T ss_pred Hhc--cCCCCCHHHHHHHHhhCCCCCCCCceeeccc--cccHHHHHHHHH
Confidence 854 799999999999999999998 68999999 799988887664
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=97.86 E-value=0.0011 Score=75.13 Aligned_cols=107 Identities=7% Similarity=0.039 Sum_probs=71.1
Q ss_pred ccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCC-CCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec--C
Q 000170 442 RDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKY-SAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY--A 516 (1950)
Q Consensus 442 ~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~-~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~--~ 516 (1950)
...+.++++++++ ++||++. +|.|.+||... + .. ..+ ....+...|++++|||||++|+++. .
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~-------~~--~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~ 106 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP-------SP--EKV--DTGFATICNNDHGISPDGALYAISDKVE 106 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC-------SC--EEC--CCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC-------Cc--eEe--ccccccccccceEECCCCCEEEEEEeCC
Confidence 3467788888875 7899886 88999999843 2 11 111 1112347799999999999999999 4
Q ss_pred CCcEEEEEC--CCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce
Q 000170 517 DGHVTVWDV--QRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL 568 (1950)
Q Consensus 517 dG~I~lWDl--~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~ 568 (1950)
++.+.||++ .+++ .+.+. .+ ..+..++|+++ +..+++++...|.
T Consensus 107 ~~~~~l~~~~~~~~~-~~~~~-~~-~~~~~~~~spd-----g~~l~~~~~~~~~ 152 (297)
T 2ojh_A 107 FGKSAIYLLPSTGGT-PRLMT-KN-LPSYWHGWSPD-----GKSFTYCGIRDQV 152 (297)
T ss_dssp TSSCEEEEEETTCCC-CEECC-SS-SSEEEEEECTT-----SSEEEEEEEETTE
T ss_pred CCcceEEEEECCCCc-eEEee-cC-CCccceEECCC-----CCEEEEEECCCCc
Confidence 455555555 5554 34443 23 35999999997 4456655555553
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.74 E-value=0.0098 Score=69.87 Aligned_cols=112 Identities=8% Similarity=0.015 Sum_probs=75.6
Q ss_pred CCcEEEEEcC--CEEEEEeC-------CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEe
Q 000170 445 GSPQVLAVHP--SFIAVGMS-------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAG 514 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts-------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG 514 (1950)
+.|..+++++ ++|++++. +|.|.+||...+ +..... . ..+.+.+++|++||+++ +++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---------~~~~~~-~---~~~~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---------EVTQAI-H---NDLKPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---------CEEEEE-E---ESSCCCSEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---------eEEEEE-e---cCCCcceEEECCCCCEEEEEe
Confidence 4577777775 68888875 468999998532 111110 1 12347889999999955 555
Q ss_pred cCCCcEEEEECCCCceeeeeccCcCC--------CeEEEEEecCCCccCCceEEEEe-cCCceEEEEcc
Q 000170 515 YADGHVTVWDVQRASAAKVITGEHTS--------PVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHSL 574 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~~H~~--------~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~f 574 (1950)
..+|.|.+||+.+++.+..+..++.. .+.+++|+++ +..+++++ ...|.|+.+..
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA-----TNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT-----TTEEEEEEESSSCEEEEEET
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC-----CCEEEEEecCCCceEEEEcC
Confidence 66899999999999998888643322 2788999987 34455555 34666666553
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.68 E-value=0.00049 Score=81.03 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=80.8
Q ss_pred cEEEEEc--CCEEEEEe--CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 447 PQVLAVH--PSFIAVGM--SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGt--s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
|.+++++ +++++++. .+|.|.+||...+ +... ....+...+.+++|+|||++|+++..+|.|.+
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~---------~~~~---~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~ 210 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGNI---------KLKT---AIQNTGKMSTGLALDSEGKRLYTTNADGELIT 210 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTTT---------EEEE---EECCCCTTCCCCEEETTTTEEEEECTTSEEEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCCC---------ceEE---EecCCCCccceEEECCCCCEEEEEcCCCeEEE
Confidence 4566665 46777765 4789999998531 2111 11113345889999999999999999999999
Q ss_pred EECCCCceeeeecc---CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 523 WDVQRASAAKVITG---EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 523 WDl~~g~~l~tl~~---~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
||+.+++....+.. +|...+..++|+++ +..+.++....|.|+.+..
T Consensus 211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 211 IDTADNKILSRKKLLDDGKEHFFINISLDTA-----RQRAFITDSKAAEVLVVDT 260 (353)
T ss_dssp EETTTTEEEEEEECCCSSSCCCEEEEEEETT-----TTEEEEEESSSSEEEEEET
T ss_pred EECCCCeEEEEEEcCCCCCCcccceEEECCC-----CCEEEEEeCCCCEEEEEEC
Confidence 99999998877753 35667899999997 4456676666677766654
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=97.68 E-value=9.4e-05 Score=97.09 Aligned_cols=103 Identities=12% Similarity=0.101 Sum_probs=72.7
Q ss_pred cEEEEEcC--CEEEEEeCC---------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 447 PQVLAVHP--SFIAVGMSK---------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~---------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
++++++++ ++||+++.+ +.|.+||...+ ..+ .+. ....+...|++++|||||++||.++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-------~~~--~l~-~~~~~~~~~~~~~~SPdG~~la~~~ 132 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG-------DPQ--SLD-PPEVSNAKLQYAGWGPKGQQLIFIF 132 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC-------CCE--ECC-CTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC-------ceE--ecc-CCccccccccccEECCCCCEEEEEE
Confidence 66777764 899999774 78889998532 111 121 2334566799999999999999998
Q ss_pred CCCcEEEEECCCCceeeeeccCcCC-----------------CeEEEEEecCCCccCCceEEEEecC
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTS-----------------PVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~-----------------~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
. ++|++||+.+|++.+....++.. .+.+++|+|| +..++.++++
T Consensus 133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-----g~~la~~~~~ 193 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-----GTRLAYAAIN 193 (723)
T ss_dssp T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-----SSEEEEEEEE
T ss_pred C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-----CCEEEEEEEC
Confidence 6 89999999999887665533321 2378999998 3445555543
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.62 E-value=0.00041 Score=89.23 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=85.5
Q ss_pred cEEEEEcC--CEEEEEeCCCcEEEEeC--CCCCCccCcccceeeeecccCCCCCCCeEEEEEcC----CCCEEEEec-CC
Q 000170 447 PQVLAVHP--SFIAVGMSKGAIVVVPG--KYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ----PGDLLLAGY-AD 517 (1950)
Q Consensus 447 pt~ia~s~--~~IAvGts~G~I~vfd~--k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~----DG~~LasG~-~d 517 (1950)
|.++++++ +++++++.+|.|.+||. +. .+.+. ... +...+..++||| ||++|++|. .+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t---------~~~~~---~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~ 247 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE---------PTKVA---EIK-IGIEARSVESSKFKGYEDRYTIAGAYWP 247 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSS---------CEEEE---EEE-CCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCC---------CcEEE---EEe-cCCCcceEEeCCCcCCCCCEEEEEEccC
Confidence 67777775 79999999999999998 32 12211 111 234589999999 999999887 58
Q ss_pred CcEEEEECCCCceeeeecc-C--------cC-CCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 518 GHVTVWDVQRASAAKVITG-E--------HT-SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~-~--------H~-~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
++|.+||..++++++++.. + |. ..|.++.|+++ +...+++....|.|+.....
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-----~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-----HPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS-----SSEEEEEETTTTEEEEEECT
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC-----CCEEEEEECCCCeEEEEEec
Confidence 9999999999999988863 1 43 48999999987 44677788888888887754
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=97.59 E-value=9.1e-05 Score=95.14 Aligned_cols=98 Identities=10% Similarity=0.011 Sum_probs=74.3
Q ss_pred EEEEcCCEEEEEeCC----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC--cEEE
Q 000170 449 VLAVHPSFIAVGMSK----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG--HVTV 522 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG--~I~l 522 (1950)
++.++|++||.++.+ +.|.+||...+ ..+ .+ ..+.+.+.+++|||||++||++..+| +|.+
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g-------~~~--~l----~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~ 222 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSG-------GLR--VF----DSGEGSFSSASISPGMKVTAGLETAREARLVT 222 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTC-------CCE--EE----CCSSCEEEEEEECTTSCEEEEEECSSCEEEEE
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCC-------Cce--Ee----ecCCCccccceECCCCCEEEEccCCCeeEEEE
Confidence 456778999988877 78999997432 111 22 34678899999999999999999999 9999
Q ss_pred EECCCCceeeeeccCcCCCeEEEE--------EecCCCccCCceEEEEecCCc
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTL--------FLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~--------F~~d~~~~~~~~~~vssD~~G 567 (1950)
||+.++++. .+. +|...|..+. |++| + .+++++..+|
T Consensus 223 ~d~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~spd-----g-~~~~~~~~~g 267 (582)
T 3o4h_A 223 VDPRDGSVE-DLE-LPSKDFSSYRPTAITWLGYLPD-----G-RLAVVARREG 267 (582)
T ss_dssp ECTTTCCEE-ECC-CSCSHHHHHCCSEEEEEEECTT-----S-CEEEEEEETT
T ss_pred EcCCCCcEE-Ecc-CCCcChhhhhhccccceeEcCC-----C-cEEEEEEcCC
Confidence 999999887 544 7877777777 9997 4 3555554444
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=97.58 E-value=5.5e-05 Score=99.30 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=72.3
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC---CeEEEEEcCCCCEEEEecCC-----
Q 000170 448 QVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA---PVTAMCFNQPGDLLLAGYAD----- 517 (1950)
Q Consensus 448 t~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~---~VtsLafS~DG~~LasG~~d----- 517 (1950)
.+++.+ ++++++ +.+|.|++||...+ +... .+ ..+.. .|++++|||||++||+++.+
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g-------~~~~-~~----~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETN-------TSTV-LI----EGKKIESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGC-------CCEE-EE----CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCC-------cEEE-Ee----ccccccccccceEEECCCCCEEEEEecCcccee
Confidence 344444 477766 68999999998532 1111 21 12332 59999999999999999875
Q ss_pred ----CcEEEEECCCCceeeeec--cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 ----GHVTVWDVQRASAAKVIT--GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 ----G~I~lWDl~~g~~l~tl~--~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
++|.+||+.+|++ +.+. .+|...|.+++|+|| ++.++.+++ +.|+...
T Consensus 87 ~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd-----G~~la~~~~--~~i~~~~ 140 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK-----GQQLIFIFE--NNIYYCA 140 (723)
T ss_dssp SCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS-----TTCEEEEET--TEEEEES
T ss_pred ecceeeEEEEECCCCce-EeccCCccccccccccEECCC-----CCEEEEEEC--CeEEEEE
Confidence 7888999999986 3332 256667999999998 455666666 4455544
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.57 E-value=0.00019 Score=99.18 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=80.4
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC---
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG--- 518 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG--- 518 (1950)
.+.+.++++++ ++||+++.++.|.+||...+ +...+ ...|.+.|++++|||||++||+++.++
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---------~~~~~---~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---------KPTVI---ERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEE---EECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCC---------ceEEe---ccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 35577777775 79999999999999998532 11111 124778899999999999999988765
Q ss_pred -------cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 519 -------HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 519 -------~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+|++||+.+++ ...+. .|...+.+++|++| ++.++.+++..
T Consensus 446 ~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spd-----G~~l~~~s~~~ 493 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDAD-----SKNLYYLSYRS 493 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTT-----SCEEEEEESCC
T ss_pred ccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCC-----CCEEEEEeccc
Confidence 99999999988 55665 78888999999998 44566666554
No 143
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=97.56 E-value=4.9e-05 Score=100.06 Aligned_cols=102 Identities=8% Similarity=0.171 Sum_probs=70.9
Q ss_pred cEEEEEc--CCEEEEEeC---------CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 447 PQVLAVH--PSFIAVGMS---------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts---------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
+.+++++ +++||.++. +|.|.+||...+ +.+. .....+.|++++|||||++||.+.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g---------~~~~----~~~l~~~~~~~~~SPDG~~la~~~ 128 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG---------EFVR----GNELPRPIQYLCWSPVGSKLAYVY 128 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---------EECC----SSCCCSSBCCEEECSSTTCEEEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC---------cccc----ceecCcccccceECCCCCEEEEEE
Confidence 4556665 589999877 789999998532 2100 001135699999999999999996
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCe-----------------EEEEEecCCCccCCceEEEEecCC
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPV-----------------VHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I-----------------~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
+++|++||+.+|++.+...++|...| ..++|+||+ +..+..+.|+.
T Consensus 129 -~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG----~~la~~~~d~~ 191 (719)
T 1z68_A 129 -QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNG----KFLAYAEFNDT 191 (719)
T ss_dssp -TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTS----SEEEEEEEECT
T ss_pred -CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCC----CEEEEEEECCC
Confidence 78999999999987655445655444 489999983 33344444543
No 144
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.55 E-value=0.00024 Score=91.37 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred cCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC--CCCce
Q 000170 453 HPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV--QRASA 530 (1950)
Q Consensus 453 s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl--~~g~~ 530 (1950)
.+.+++++..+|.|.+||...+ +.+.. .. .++ .+.+++|||||++|++++.||+|.+||+ .++++
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~---------~~~~~-i~-~g~--~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSK---------KIVKV-ID-TGY--AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTC---------CEEEE-EE-CST--TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred CCEEEEEEcCCCeEEEEECCCc---------eEEEE-Ee-cCc--ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcE
Confidence 4567888999999999998532 21110 01 112 2999999999999999999999999999 89999
Q ss_pred eeeeccCcCCCeEEEEEec----CCCccCCceEEEEecCCceEEEEc
Q 000170 531 AKVITGEHTSPVVHTLFLG----QDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 531 l~tl~~~H~~~I~~v~F~~----d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+.++. +...+.+++|++ | ++.+++++...+.|..+.
T Consensus 215 ~~~i~--~g~~p~~va~sp~~~~d-----g~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 215 VAEIK--IGIEARSVESSKFKGYE-----DRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EEEEE--CCSEEEEEEECCSTTCT-----TTEEEEEEEESSEEEEEE
T ss_pred EEEEe--cCCCcceEEeCCCcCCC-----CCEEEEEEccCCeEEEEe
Confidence 88885 445689999998 7 456666665455554444
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.46 E-value=0.0012 Score=78.36 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=77.8
Q ss_pred cCCCcEEEEEcC--CEEEEEe-CCCcEEEEeCCCCCCccCcccceeee-ecccCC-----CCCCCeEEEEEcCCCCEEEE
Q 000170 443 DHGSPQVLAVHP--SFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMM-LGLLGD-----RSPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~-l~~~~~-----~h~~~VtsLafS~DG~~Las 513 (1950)
..+.|..+++++ ++|+++. .+|.|.+||+... .....+. ....+. .....+.+++|+|||+.+++
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~------g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~ 157 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD------GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI 157 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT------SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC------CCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEE
Confidence 355687887774 7888877 6799999998421 0111111 110111 12345999999999998888
Q ss_pred ecCCCcEEEEECC-CCceee--eeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 514 GYADGHVTVWDVQ-RASAAK--VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 514 G~~dG~I~lWDl~-~g~~l~--tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+..++.|.+||+. +|+... .+.......+.+++|++| +..+++++...|.|..+.
T Consensus 158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd-----g~~l~v~~~~~~~v~v~~ 215 (347)
T 3hfq_A 158 DLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD-----GQYAFLAGELSSQIASLK 215 (347)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT-----SSEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC-----CCEEEEEeCCCCEEEEEE
Confidence 8899999999998 565432 222122347889999997 455667666666554443
No 146
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.44 E-value=0.0012 Score=77.49 Aligned_cols=110 Identities=7% Similarity=0.032 Sum_probs=73.8
Q ss_pred CCcEEEEEcC--CEEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC---
Q 000170 445 GSPQVLAVHP--SFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG--- 518 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG--- 518 (1950)
+.| ++++++ +++++++. ++.|.+||...+ ......+ ..+.+++.+++|+|||++|++++.+|
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-------~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 108 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-------PPKVVAI----QEGQSSMADVDITPDDQFAVTVTGLNHPF 108 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-------SCEEEEE----EECSSCCCCEEECTTSSEEEECCCSSSSC
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-------ceeEEec----ccCCCCccceEECCCCCEEEEecCCCCcc
Confidence 335 777765 66666555 899999998532 1101111 12445666699999999999888774
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCce-EEEEc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGL-VQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~-V~~h~ 573 (1950)
.|.+||+.+++.++.+. +.....+++|+++ +..++++....+. ++.+.
T Consensus 109 ~i~v~d~~~~~~~~~~~--~~~~~~~~~~spd-----g~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIP--IPYDAVGIAISPN-----GNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp EEEEEETTTTEEEEEEE--CCTTEEEEEECTT-----SSCEEEEEETTTTEEEEEE
T ss_pred cEEEEECCCCCeEEEEE--CCCCccceEECCC-----CCEEEEEecCCCceEEEEE
Confidence 89999999999988775 3345689999998 3345555444344 44444
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.40 E-value=0.0015 Score=76.26 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=72.9
Q ss_pred CcEEEEEcC--CEEEEE-eCCCcEEEEeCCCCCCccCcccceee-eec--ccCCCCCCCeEEEEEcCCCCEEE-EecCCC
Q 000170 446 SPQVLAVHP--SFIAVG-MSKGAIVVVPGKYSAHHRDSMDSKMM-MLG--LLGDRSPAPVTAMCFNQPGDLLL-AGYADG 518 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvG-ts~G~I~vfd~k~~~~~~d~~~~k~~-~l~--~~~~~h~~~VtsLafS~DG~~La-sG~~dG 518 (1950)
.|.++++++ .+++++ ..+|.|.+||+... ....... ... ..+......+.+++|+|||++|+ ++..+|
T Consensus 179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDP-----HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEESSCT-----TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 678888875 566554 48899999998320 0011101 111 01111245688999999999887 556899
Q ss_pred cEEEEECC--CC--ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 519 HVTVWDVQ--RA--SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 519 ~I~lWDl~--~g--~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.|.+||+. ++ +.+..+. .+.. +.+++|+++ +..+++++...|.|..+
T Consensus 254 ~i~v~d~~~~~~~~~~~~~~~-~~~~-~~~~~~s~d-----g~~l~~~~~~~~~v~v~ 304 (343)
T 1ri6_A 254 LITVFSVSEDGSVLSKEGFQP-TETQ-PRGFNVDHS-----GKYLIAAGQKSHHISVY 304 (343)
T ss_dssp EEEEEEECTTSCCEEEEEEEE-CSSS-CCCEEECTT-----SSEEEEECTTTCEEEEE
T ss_pred EEEEEEEcCCCCceEEeeeec-CCCc-cceEEECCC-----CCEEEEecCCCCeEEEE
Confidence 99999998 33 3444443 3333 889999987 45667766555555444
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=97.40 E-value=0.00077 Score=93.14 Aligned_cols=100 Identities=10% Similarity=0.068 Sum_probs=76.2
Q ss_pred CcEEEEEc-CCEEEEEeCCCcEE-EEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 446 SPQVLAVH-PSFIAVGMSKGAIV-VVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 446 ~pt~ia~s-~~~IAvGts~G~I~-vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.+.+++.+ ++.|+.++.++.|. +||...+ +...+ ..|...|.+++|||||++||+++.++.|++|
T Consensus 339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~---------~~~~l----~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~ 405 (1045)
T 1k32_A 339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---------KAEKF----EENLGNVFAMGVDRNGKFAVVANDRFEIMTV 405 (1045)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEETTTC---------CEEEC----CCCCCSEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEeeeEcCCCeEEEEECCCceEEEEECCCC---------CceEe----cCCccceeeeEECCCCCEEEEECCCCeEEEE
Confidence 44555554 45788888888888 8987431 11111 2467889999999999999999999999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
|+.+|++...+. +|...|.+++|++| ++.++.++.
T Consensus 406 d~~tg~~~~~~~-~~~~~v~~~~~SpD-----G~~la~~~~ 440 (1045)
T 1k32_A 406 DLETGKPTVIER-SREAMITDFTISDN-----SRFIAYGFP 440 (1045)
T ss_dssp ETTTCCEEEEEE-CSSSCCCCEEECTT-----SCEEEEEEE
T ss_pred ECCCCceEEecc-CCCCCccceEECCC-----CCeEEEEec
Confidence 999999877664 79999999999998 344555443
No 149
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.38 E-value=0.00045 Score=91.77 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=71.8
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC---------CcEEE
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD---------GHVTV 522 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d---------G~I~l 522 (1950)
+++.+++++ +|.|.+||.+.+ . ...++..............++|||||++||.++.+ |.|.+
T Consensus 26 ~dg~~~~~~--~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 26 SDHEYLYKQ--ENNILVFNAEYG------N-SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp SSSEEEEEE--TTEEEEEETTTC------C-EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred CCCcEEEEc--CCcEEEEECCCC------c-eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 345788887 999999998642 1 12222111111222334568999999999999986 67789
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
||+.+|++.+ +. .|...+..++|+|| ++.++.+.| +.||....
T Consensus 97 ~d~~~~~~~~-l~-~~~~~~~~~~~SPd-----G~~la~~~~--~~i~~~~~ 139 (740)
T 4a5s_A 97 YDLNKRQLIT-EE-RIPNNTQWVTWSPV-----GHKLAYVWN--NDIYVKIE 139 (740)
T ss_dssp EETTTTEECC-SS-CCCTTEEEEEECSS-----TTCEEEEET--TEEEEESS
T ss_pred EECCCCcEEE-cc-cCCCcceeeEECCC-----CCEEEEEEC--CeEEEEEC
Confidence 9999998754 44 67789999999998 455666665 34555543
No 150
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=97.37 E-value=0.0031 Score=82.97 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=55.2
Q ss_pred CCCeEEEEEcCCCCEEEEecC-CC-----cEEEEECCCCceeeeeccCcCC------------------------CeEEE
Q 000170 496 PAPVTAMCFNQPGDLLLAGYA-DG-----HVTVWDVQRASAAKVITGEHTS------------------------PVVHT 545 (1950)
Q Consensus 496 ~~~VtsLafS~DG~~LasG~~-dG-----~I~lWDl~~g~~l~tl~~~H~~------------------------~I~~v 545 (1950)
...|++++|||||++||+++. || +|.+||+.+|+..+.+. .|.. .|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC-GGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccCccee
Confidence 567999999999999999998 88 99999999998876664 4432 38999
Q ss_pred EEecCCCccCCceEEEEecCCceEEEEc
Q 000170 546 LFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 546 ~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+|++| +..++++++ |.|+.+.
T Consensus 115 ~~SpD-----g~~l~~~~~--~~i~~~d 135 (741)
T 2ecf_A 115 QWSPD-----AQRLLFPLG--GELYLYD 135 (741)
T ss_dssp EECTT-----SSEEEEEET--TEEEEEE
T ss_pred EECCC-----CCEEEEEeC--CcEEEEE
Confidence 99998 456666665 5555544
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.36 E-value=0.0014 Score=77.82 Aligned_cols=116 Identities=12% Similarity=0.106 Sum_probs=73.7
Q ss_pred CcEEEEEcC--CEEEE-EeCCCcEEEEeCCCCCCccCcccceeeeecccCC---CCCCCeEEEEEcCCCCEE-EEecCCC
Q 000170 446 SPQVLAVHP--SFIAV-GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGD---RSPAPVTAMCFNQPGDLL-LAGYADG 518 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAv-Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~---~h~~~VtsLafS~DG~~L-asG~~dG 518 (1950)
.|..+++++ +++++ +..++.|.+|++... .............. .....+.+++|||||++| +++..++
T Consensus 188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ-----TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEETT-----TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 577778775 66665 567889999987320 00111110000111 112569999999999988 5667799
Q ss_pred cEEEEECCC-C--ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 519 HVTVWDVQR-A--SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 519 ~I~lWDl~~-g--~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.|.+||+.. | +.+..+. .|...+.+++|++| +..+++++...|.|..+
T Consensus 263 ~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spd-----g~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPT-----EAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTT-----SSEEEEEETTTTEEEEE
T ss_pred EEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCC-----CCEEEEEEcCCCcEEEE
Confidence 999999973 3 3444554 56667899999998 45666666555544444
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.34 E-value=0.002 Score=76.87 Aligned_cols=113 Identities=10% Similarity=0.094 Sum_probs=73.9
Q ss_pred CCcEEEEEcC--CEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC--CCc
Q 000170 445 GSPQVLAVHP--SFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA--DGH 519 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~--dG~ 519 (1950)
..|.++++++ ++++++. .++.|.+||+..+ ....+........+...+.+++|||||++|+++.. ++.
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-------~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-------MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-------EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-------ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 3477888875 6787776 6899999997421 11111101122334456799999999999966655 589
Q ss_pred EEEEECC--CCc--eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 520 VTVWDVQ--RAS--AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 520 I~lWDl~--~g~--~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
|.+||+. +|+ .+..+. . ...+.+++|++| +..+++++...+.|..
T Consensus 284 i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spd-----g~~l~~~~~~~~~v~v 332 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPN-----GKYLLVACRDTNVIQI 332 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTT-----SCEEEEEETTTTEEEE
T ss_pred EEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCC-----CCEEEEEECCCCCEEE
Confidence 9999995 555 333443 2 457889999997 4566676645554444
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=97.30 E-value=0.00068 Score=87.01 Aligned_cols=104 Identities=9% Similarity=-0.042 Sum_probs=70.9
Q ss_pred cEEEEEcCC-EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC----CcEE
Q 000170 447 PQVLAVHPS-FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD----GHVT 521 (1950)
Q Consensus 447 pt~ia~s~~-~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d----G~I~ 521 (1950)
..+++++++ .+.+..+++.+.+||...+ +...+. . +.+ .+++|||||++||+++.+ +.|.
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~l~d~~~g---------~~~~l~-~---~~~--~~~~~spDG~~la~~~~~~~~~~~i~ 178 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVALYALDGG---------GLRELA-R---LPG--FGFVSDIRGDLIAGLGFFGGGRVSLF 178 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEEEEEEETT---------EEEEEE-E---ESS--CEEEEEEETTEEEEEEEEETTEEEEE
T ss_pred eeeeCCCCCeEEEEecCCCCceEEEccCC---------cEEEee-c---CCC--ceEEECCCCCEEEEEEEcCCCCeEEE
Confidence 346777774 2333445555669998431 111211 1 112 899999999999988877 7899
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc--eEEEEc
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG--LVQLHS 573 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G--~V~~h~ 573 (1950)
+||+.+|+.. .+. +|...+.+++|+|| +..++ +++..| .++.+.
T Consensus 179 ~~d~~~g~~~-~l~-~~~~~~~~~~~SpD-----G~~l~-~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 179 TSNLSSGGLR-VFD-SGEGSFSSASISPG-----MKVTA-GLETAREARLVTVD 224 (582)
T ss_dssp EEETTTCCCE-EEC-CSSCEEEEEEECTT-----SCEEE-EEECSSCEEEEEEC
T ss_pred EEcCCCCCce-Eee-cCCCccccceECCC-----CCEEE-EccCCCeeEEEEEc
Confidence 9999998864 565 78889999999998 34455 677777 454444
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=97.29 E-value=0.00097 Score=87.40 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=60.1
Q ss_pred CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC-----cEEEEECCCCceeeeec-
Q 000170 462 SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG-----HVTVWDVQRASAAKVIT- 535 (1950)
Q Consensus 462 s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG-----~I~lWDl~~g~~l~tl~- 535 (1950)
.++.|.+||...+ +...+ .....+...|++++|||||++|+++..++ .|.+||+.+|+..+.+.
T Consensus 233 ~~~~l~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~ 302 (706)
T 2z3z_A 233 HHVTVGIYHLATG---------KTVYL-QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV 302 (706)
T ss_dssp CEEEEEEEETTTT---------EEEEC-CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred CeeEEEEEECCCC---------ceEee-ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE
Confidence 4577999998532 11111 12234667899999999999999988876 99999999994444443
Q ss_pred cCcCC---CeEEEEEec--CCCccCCceEEEEecCCc
Q 000170 536 GEHTS---PVVHTLFLG--QDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 536 ~~H~~---~I~~v~F~~--d~~~~~~~~~~vssD~~G 567 (1950)
..+.. .+.+++|++ | +. .+++++.+|
T Consensus 303 ~~~~~~~~~~~~~~~sp~~d-----g~-~l~~~~~~g 333 (706)
T 2z3z_A 303 ETDKHYVEPLHPLTFLPGSN-----NQ-FIWQSRRDG 333 (706)
T ss_dssp EECSSCCCCCSCCEECTTCS-----SE-EEEEECTTS
T ss_pred ccCCCeECccCCceeecCCC-----CE-EEEEEccCC
Confidence 22322 357889998 7 33 444555545
No 155
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.29 E-value=0.00048 Score=84.94 Aligned_cols=86 Identities=8% Similarity=-0.043 Sum_probs=67.6
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
+.++.+.+..+|+++++|.|.+||++.+ . ... +...|+|+||||+| ++.|..||+|++|+..
T Consensus 129 v~~i~~~~p~~av~~~dG~L~v~dl~~~------~---~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~ 190 (388)
T 1xip_A 129 VFQLKNVNNTLVILNSVNDLSALDLRTK------S---TKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWR 190 (388)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTC------C---EEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEE
T ss_pred eeeEEecCCCEEEEECCCCEEEEEccCC------c---ccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCC
Confidence 4555665556999999999999999632 1 111 23479999999999 7899999999999998
Q ss_pred CCce--eeee------cc--CcCCCeEEEEEecC
Q 000170 527 RASA--AKVI------TG--EHTSPVVHTLFLGQ 550 (1950)
Q Consensus 527 ~g~~--l~tl------~~--~H~~~I~~v~F~~d 550 (1950)
.+++ .+++ .+ +|...|.+|.|+++
T Consensus 191 ~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 191 NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred CccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 8886 6677 22 48899999999975
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=97.26 E-value=0.0011 Score=88.15 Aligned_cols=100 Identities=7% Similarity=0.050 Sum_probs=70.8
Q ss_pred EEEEcCCEEEEEeCC---------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 449 VLAVHPSFIAVGMSK---------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~---------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
++.+++++||+++.+ |.+.+||+..+ +.. +...+.+.+...+|||||++||.++ +++
T Consensus 68 ~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~---------~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~ 133 (740)
T 4a5s_A 68 SISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---------QLI----TEERIPNNTQWVTWSPVGHKLAYVW-NND 133 (740)
T ss_dssp EECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---------EEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTE
T ss_pred EECCCCCEEEEEECCeeeEEEccceEEEEEECCCC---------cEE----EcccCCCcceeeEECCCCCEEEEEE-CCe
Confidence 455667899999876 66779998542 211 2234667899999999999999995 789
Q ss_pred EEEEECCCCceeeeeccCcCCCeE-----------------EEEEecCCCccCCceEEEEecCC
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVV-----------------HTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~-----------------~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
|.+||+.+|+..+...+++...|. .+.|+||+ +..+..+.|+.
T Consensus 134 i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg----~~la~~~~d~~ 193 (740)
T 4a5s_A 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG----TFLAYAQFNDT 193 (740)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS----SEEEEEEEECT
T ss_pred EEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC----CEEEEEEEccc
Confidence 999999999876544445544442 48999983 33444444544
No 157
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.23 E-value=0.0027 Score=74.33 Aligned_cols=115 Identities=9% Similarity=0.010 Sum_probs=75.4
Q ss_pred CCCcEEEEEcC--CEEEE-EeCCCc-EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEecCCC
Q 000170 444 HGSPQVLAVHP--SFIAV-GMSKGA-IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAGYADG 518 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAv-Gts~G~-I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG~~dG 518 (1950)
...|.++++++ +++++ +..++. |.+|++... ................+.+++|+|||++| +++..++
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 198 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD--------GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN 198 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT--------CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECCC--------CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC
Confidence 34578888886 45554 455688 999997421 01000000000123458999999999965 5566799
Q ss_pred cEEEEECCCCce---eeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRASA---AKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~~---l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.|.+||+.+++. +..+. +...+.+++|++| +..++++....+.|+.+.
T Consensus 199 ~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spd-----g~~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 199 SIGILETQNPENITLLNAVG--TNNLPGTIVVSRD-----GSTVYVLTESTVDVFNFN 249 (331)
T ss_dssp EEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTT-----SSEEEEECSSEEEEEEEE
T ss_pred eEEEEECCCCcccceeeecc--CCCCCceEEECCC-----CCEEEEEEcCCCEEEEEE
Confidence 999999999998 77774 3467789999997 455666655555555544
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=97.22 E-value=0.0017 Score=75.58 Aligned_cols=93 Identities=8% Similarity=0.011 Sum_probs=65.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCC-CeEEEEEcCCCCEE-EEecCCCcEEEEECCCCceee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPA-PVTAMCFNQPGDLL-LAGYADGHVTVWDVQRASAAK 532 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~-~VtsLafS~DG~~L-asG~~dG~I~lWDl~~g~~l~ 532 (1950)
+++++++.+|.|.+||...+ +.+.. ... .+.. .+.+++|||||+++ +++..+|.|.+||+.+++.+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~---------~~~~~-~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM---------AVDKV-ITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT---------EEEEE-EEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred cEEEEcCCCCeEEEEECCCC---------cEEEE-EEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 47899999999999998531 11110 011 1111 48899999999865 566778999999999999887
Q ss_pred eeccCc----CCCeEEEEEecCCCccCCceEEEEe
Q 000170 533 VITGEH----TSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 533 tl~~~H----~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
.+..++ ...+.+++|+++ +..++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~~ 100 (337)
T 1pby_B 71 RIDLSTPEERVKSLFGAALSPD-----GKTLAIYE 100 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTT-----SSEEEEEE
T ss_pred eEEcCCcccccccccceEECCC-----CCEEEEEe
Confidence 775443 337889999987 34455553
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.17 E-value=0.0039 Score=74.36 Aligned_cols=116 Identities=7% Similarity=0.029 Sum_probs=72.9
Q ss_pred CCCcEEEEEcC--CEEEEEe-CCCcEEEEeCCCCCCccCcc----c-cee----eeecccCCCCCCCeEEEEEcCCCCEE
Q 000170 444 HGSPQVLAVHP--SFIAVGM-SKGAIVVVPGKYSAHHRDSM----D-SKM----MMLGLLGDRSPAPVTAMCFNQPGDLL 511 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGt-s~G~I~vfd~k~~~~~~d~~----~-~k~----~~l~~~~~~h~~~VtsLafS~DG~~L 511 (1950)
...|.++++++ ++|++.. .++.|.+|++... .. . ... ... . ..+...+..++|||||++|
T Consensus 154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~-----~~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN-----ANADNKEKFLTKGTPEAF--K-VAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----CCTTTCCCCEEEEEEEEE--E-CCTTCCEEEEEECTTSSEE
T ss_pred CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC-----CCcccccceeecccccce--e-cCCCCCCeEEEEcCCCCEE
Confidence 44567788775 6665554 5889999987421 00 0 100 010 1 1133457899999999988
Q ss_pred EEec-CCCcEEEEECCCCce--eeeec--cCcCCCeEEEEEecCCCccCCceEEEEecC-CceEEEE
Q 000170 512 LAGY-ADGHVTVWDVQRASA--AKVIT--GEHTSPVVHTLFLGQDSQVTRQFKAVTGDT-KGLVQLH 572 (1950)
Q Consensus 512 asG~-~dG~I~lWDl~~g~~--l~tl~--~~H~~~I~~v~F~~d~~~~~~~~~~vssD~-~G~V~~h 572 (1950)
+++. .++.|.+||+.+|+. +..+. ..|.....+++|++| ++.++++... .+.|..+
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd-----g~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD-----GKYLYASNRLKADGVAIF 287 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT-----SSEEEEEECSSSCEEEEE
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC-----CCEEEEECCCCCCEEEEE
Confidence 7666 799999999998864 22232 134456789999998 4456566554 4544443
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.17 E-value=0.0011 Score=77.62 Aligned_cols=98 Identities=6% Similarity=-0.086 Sum_probs=68.1
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEE-EEecCCCcEEEEECCCCce
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLL-LAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~L-asG~~dG~I~lWDl~~g~~ 530 (1950)
.++.++++++.+|.|.+||...+ +.... ... .....+..++|+|||+++ +++..+|.|.+||+.+++.
T Consensus 9 ~~~~~~v~~~~~~~v~~~d~~~~---------~~~~~-~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~ 77 (349)
T 1jmx_B 9 AGHEYMIVTNYPNNLHVVDVASD---------TVYKS-CVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN 77 (349)
T ss_dssp TTCEEEEEEETTTEEEEEETTTT---------EEEEE-EEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCEEEEEeCCCCeEEEEECCCC---------cEEEE-Eec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence 34467889999999999998532 11110 011 112257899999999865 5667899999999999998
Q ss_pred eeeeccCc-----CCCeEEEEEecCCCccCCceEEEEecC
Q 000170 531 AKVITGEH-----TSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 531 l~tl~~~H-----~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
...+..+| ...+.+++|+++ +..+++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~spd-----g~~l~~~~~~ 112 (349)
T 1jmx_B 78 TFHANLSSVPGEVGRSMYSFAISPD-----GKEVYATVNP 112 (349)
T ss_dssp EEEEESCCSTTEEEECSSCEEECTT-----SSEEEEEEEE
T ss_pred EEEEEcccccccccccccceEECCC-----CCEEEEEccc
Confidence 87775333 334889999997 4456655533
No 161
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=97.13 E-value=0.0022 Score=79.12 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=75.0
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
|++++++++++++| .+|.|.+||.... ...... ..+..+|.++.+.+.. +|++..||.|.+||+.
T Consensus 90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl------~~~~~~------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCFHGDQVLVS-TRNALYSLDLEEL------SEFRTV------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR 154 (388)
T ss_dssp EEEEEEETTEEEEE-ESSEEEEEESSST------TCEEEE------EECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred eeEEEECCCEEEEE-cCCcEEEEEchhh------hccCcc------ceeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence 89999988999999 8899999998532 111111 1245678888876653 9999999999999999
Q ss_pred CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 527 RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 527 ~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
++...+ |...|++++|+++ + .++.+.|..+.+|...
T Consensus 155 ~~~~~~-----~~~~Vs~v~WSpk-----G-~~vg~~dg~i~~~~~~ 190 (388)
T 1xip_A 155 TKSTKQ-----LAQNVTSFDVTNS-----Q-LAVLLKDRSFQSFAWR 190 (388)
T ss_dssp TCCEEE-----EEESEEEEEECSS-----E-EEEEETTSCEEEEEEE
T ss_pred CCcccc-----ccCCceEEEEcCC-----c-eEEEEcCCcEEEEcCC
Confidence 888643 4579999999987 3 5666667666565443
No 162
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=97.08 E-value=0.0035 Score=82.13 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=79.5
Q ss_pred CCcEEEEEcC--CEEEEEeCCC-----cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC--CCCEEEEec
Q 000170 445 GSPQVLAVHP--SFIAVGMSKG-----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ--PGDLLLAGY 515 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts~G-----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~--DG~~LasG~ 515 (1950)
+.+++++.++ ++|++++.++ .|.+||...+ ...+.+. ..........+.+++||| ||++|+++.
T Consensus 258 ~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g------~~~~~~~-~~~~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 258 KFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG------RFVRTLF-VETDKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC------CEEEEEE-EEECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred eeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC------ceeeEEE-EccCCCeECccCCceeecCCCCEEEEEEc
Confidence 3467777764 7899987775 8999998532 0111111 111111223467899999 999999999
Q ss_pred CCCcEEEEECC-CCceeeeeccCcCCCeEE-EEEecCCCccCCceEEEEecCCc----eEEEEc
Q 000170 516 ADGHVTVWDVQ-RASAAKVITGEHTSPVVH-TLFLGQDSQVTRQFKAVTGDTKG----LVQLHS 573 (1950)
Q Consensus 516 ~dG~I~lWDl~-~g~~l~tl~~~H~~~I~~-v~F~~d~~~~~~~~~~vssD~~G----~V~~h~ 573 (1950)
.+|.++||++. +++.++.+. .|...|.. ++|+++ +..+++++...| .||...
T Consensus 331 ~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spd-----g~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 331 RDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPK-----GTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp TTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTT-----SSEEEEEESSSCTTCBEEEEEE
T ss_pred cCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCC-----CCEEEEEecCCCCceEEEEEEE
Confidence 99999999987 677778886 67778887 799987 445555555544 555554
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=97.08 E-value=0.00038 Score=91.62 Aligned_cols=99 Identities=7% Similarity=0.068 Sum_probs=67.6
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCC---CCeEEEEEcCCCCEEEEecC---------CCc
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSP---APVTAMCFNQPGDLLLAGYA---------DGH 519 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~---~~VtsLafS~DG~~LasG~~---------dG~ 519 (1950)
+++.+++. +.+|.|.+||...+ ....+. . .+. ..|.+++|||||++||.++. +|+
T Consensus 25 ~dg~~~~~-~~d~~i~~~~~~~g-------~~~~~~-~----~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 25 SGQEYLHQ-SADNNIVLYNIETG-------QSYTIL-S----NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp SSSEEEEE-CTTSCEEEEESSSC-------CEEEEE-C----HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred CCCeEEEE-cCCCCEEEEEcCCC-------cEEEEE-c----cccccccceeeEEECCCCCeEEEEecCceeEEeecceE
Confidence 34455554 47999999998542 111111 1 111 24999999999999999987 799
Q ss_pred EEEEECCCCcee--eeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 520 VTVWDVQRASAA--KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 520 I~lWDl~~g~~l--~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|++||+.+|+++ ..+ ...|.+++|+|| ++.++.+.| +.|+.+..
T Consensus 92 i~~~d~~~g~~~~~~~l----~~~~~~~~~SPD-----G~~la~~~~--~~i~~~~~ 137 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNEL----PRPIQYLCWSPV-----GSKLAYVYQ--NNIYLKQR 137 (719)
T ss_dssp EEEEETTTTEECCSSCC----CSSBCCEEECSS-----TTCEEEEET--TEEEEESS
T ss_pred EEEEECCCCccccceec----CcccccceECCC-----CCEEEEEEC--CeEEEEeC
Confidence 999999999873 222 256899999998 345666654 34555543
No 164
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.84 E-value=0.0028 Score=73.71 Aligned_cols=111 Identities=11% Similarity=0.050 Sum_probs=72.5
Q ss_pred CcEEEEEcC--CEEE-EEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec-------
Q 000170 446 SPQVLAVHP--SFIA-VGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY------- 515 (1950)
Q Consensus 446 ~pt~ia~s~--~~IA-vGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~------- 515 (1950)
.|.++++++ ++++ ++..+|.|.+||...+ .....+... ....+...+.+++|+|||++|+++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG------ETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTC------CEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCC------CeEeeEEcC-CcccccccccceEECCCCCEEEEEeccccccc
Confidence 477777765 5664 4556789999998532 111111110 0000122578899999999999986
Q ss_pred -----CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 516 -----ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 516 -----~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.++.|.+||+.+++....+.. ...+.+++|+++ +..++++ + |.++.+.
T Consensus 108 ~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~d-----g~~l~~~-~--~~i~~~d 160 (337)
T 1pby_B 108 THFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARD-----GSKLYGL-G--RDLHVMD 160 (337)
T ss_dssp SCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTT-----SSCEEEE-S--SSEEEEE
T ss_pred ccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCC-----CCEEEEe-C--CeEEEEE
Confidence 689999999999998877752 456788999987 3445555 2 4444443
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=96.81 E-value=0.0036 Score=75.47 Aligned_cols=116 Identities=8% Similarity=0.011 Sum_probs=73.3
Q ss_pred CCcEEEEEcC--C--EEEEEe-------------CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC
Q 000170 445 GSPQVLAVHP--S--FIAVGM-------------SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP 507 (1950)
Q Consensus 445 G~pt~ia~s~--~--~IAvGt-------------s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D 507 (1950)
|.|.++++++ + +++++. .+|.|.+|++.. +......+.. ....+...+.+++||||
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~-----~g~~~~~~~~--~~~~~~~~~~~~~~spd 155 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSE-----TGKLEKNVQN--YEYQENTGIHGMVFDPT 155 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECT-----TCCEEEEEEE--EECCTTCCEEEEEECTT
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCC-----CCcCcceEee--EEeCCCCcceEEEECCC
Confidence 4566666654 5 355553 689999999842 1111111110 00123467999999999
Q ss_pred CCEEEEec-CCCcEEEEECC-CCcee--eeecc-CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 508 GDLLLAGY-ADGHVTVWDVQ-RASAA--KVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 508 G~~LasG~-~dG~I~lWDl~-~g~~l--~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
|++|+++. .++.|.+||+. +|+.. ..+.. .|...+.+++|++| ++.++++....+.|..+
T Consensus 156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spd-----g~~l~v~~~~~~~v~v~ 220 (365)
T 1jof_A 156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT-----GNYLYALMEAGNRICEY 220 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT-----SSEEEEEETTTTEEEEE
T ss_pred CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCC-----CCEEEEEECCCCeEEEE
Confidence 99888765 47899999998 78753 22321 25678999999998 45566666555555443
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=96.77 E-value=0.0031 Score=81.91 Aligned_cols=109 Identities=15% Similarity=0.065 Sum_probs=71.9
Q ss_pred cEEEEE--cCCEEEEEeCC----------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEe
Q 000170 447 PQVLAV--HPSFIAVGMSK----------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAG 514 (1950)
Q Consensus 447 pt~ia~--s~~~IAvGts~----------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG 514 (1950)
+.+++. ++++||.++.+ ..|.+||...+.. .+....+ .+ . ..+.+.+.+++|||||++||.+
T Consensus 132 ~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~--~l--~-~~~~~~~~~~~~SpDG~~la~~ 205 (662)
T 3azo_A 132 WADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA-ADRSAVR--EL--S-DDAHRFVTGPRLSPDGRQAVWL 205 (662)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT-TCGGGSE--ES--S-CSCSSEECCCEECTTSSEEEEE
T ss_pred ccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc-ccCCcee--EE--E-ecCCCcccCceECCCCCEEEEE
Confidence 344444 45889888776 5899999843000 0001111 11 1 0345678899999999999987
Q ss_pred cCC--------CcEEEEECC-CC--ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 515 YAD--------GHVTVWDVQ-RA--SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 515 ~~d--------G~I~lWDl~-~g--~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
+.+ ..|.+||+. +| ...+.+..+|...+.++.|++| +. ++++++.+|
T Consensus 206 ~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd-----g~-l~~~~~~~~ 263 (662)
T 3azo_A 206 AWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD-----GS-LIVATDRTG 263 (662)
T ss_dssp EECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT-----SC-EEEEECTTS
T ss_pred ECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC-----Ce-EEEEECCCC
Confidence 755 379999999 57 2334555577889999999998 34 556666666
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=96.64 E-value=0.0091 Score=71.88 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=72.4
Q ss_pred CCcEEEEEcC--CEEEEEeC-CCcEEEEeCCCCCCccCcccceee----eec-ccC--CCCCC------CeEEEE-EcCC
Q 000170 445 GSPQVLAVHP--SFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMM----MLG-LLG--DRSPA------PVTAMC-FNQP 507 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~----~l~-~~~--~~h~~------~VtsLa-fS~D 507 (1950)
..|..+++++ ++++++.. ++.|.+|++.. .+++.. .+. .+. .++.+ .+.+++ ||||
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~-------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd 265 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDP-------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS 265 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECT-------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeC-------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC
Confidence 4588888875 68888765 68999998631 111110 011 011 12232 589999 9999
Q ss_pred CCEEEEecCCC------cEEEEECC-CCceeeee--ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 508 GDLLLAGYADG------HVTVWDVQ-RASAAKVI--TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 508 G~~LasG~~dG------~I~lWDl~-~g~~l~tl--~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
|++|+++..++ .|.+||+. +|+..... ...|...+..++|+|.++ .+..++++..+.|.|..+
T Consensus 266 G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~--dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW--SDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT--CTTEEEEECSSSCEEEEE
T ss_pred CCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc--CCCEEEEEEcCCCeEEEE
Confidence 99998776533 79999996 67754321 124555677889998211 034566666555544443
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.47 E-value=0.035 Score=63.71 Aligned_cols=111 Identities=8% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC-cE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG-HV 520 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG-~I 520 (1950)
...|.+|++++ .++++++.++.|.+||... . ....+ ...++...++.|+|++||..++++..++ .|
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-------~--~~~~~--~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i 231 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-------Q--YLRQI--GGEGITNYPIGVGINSNGEILIADNHNNFNL 231 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-------C--EEEEE--SCTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-------C--EEEEE--ccCCccCCCcEEEECCCCCEEEEeCCCCEEE
Confidence 44689999986 4555566789999999631 1 11111 2223346789999999999999998886 99
Q ss_pred EEEECCCCceeeeeccC-cCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 521 TVWDVQRASAAKVITGE-HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~~-H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.+||. +|+.+.++..+ +...+..++|.++ ++ +.++ +.++.|..+.
T Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~-----g~-l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 232 TIFTQ-DGQLISALESKVKHAQCFDVALMDD-----GS-VVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETT-----TE-EEEE-ETTTEEEEEE
T ss_pred EEECC-CCCEEEEEcccCCCCcceeEEECCC-----Cc-EEEE-CCCCeEEEEE
Confidence 99995 57777776522 2245789999986 33 5555 4455554443
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.46 E-value=0.0077 Score=70.49 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred CcEEEEEcC--CEEE-EEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCC----CCCeEEEEEcCCCCEEEEecCC-
Q 000170 446 SPQVLAVHP--SFIA-VGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRS----PAPVTAMCFNQPGDLLLAGYAD- 517 (1950)
Q Consensus 446 ~pt~ia~s~--~~IA-vGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h----~~~VtsLafS~DG~~LasG~~d- 517 (1950)
.|..+++++ ++++ ++..+|.|.+||...+ +..... ..... ...+.+++|||||++|+++..+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---------~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 113 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---------KNTFHA-NLSSVPGEVGRSMYSFAISPDGKEVYATVNPT 113 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEE-ESCCSTTEEEECSSCEEECTTSSEEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---------cEEEEE-EcccccccccccccceEECCCCCEEEEEcccc
Confidence 477777764 5554 4556899999998531 111110 11110 2348899999999999999876
Q ss_pred -----------CcEEEEECCCCceeeeec-cCcCCCeEEEEEecC
Q 000170 518 -----------GHVTVWDVQRASAAKVIT-GEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 518 -----------G~I~lWDl~~g~~l~tl~-~~H~~~I~~v~F~~d 550 (1950)
+.|.+||+.+++..+.+. ..|...|.+++|+++
T Consensus 114 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 114 QRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp EECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred cccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence 999999999966443221 124456889999987
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.45 E-value=0.03 Score=64.37 Aligned_cols=115 Identities=11% Similarity=0.109 Sum_probs=78.4
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC--CCCCCCeEEEEE-cCCCCEEEEecC-
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG--DRSPAPVTAMCF-NQPGDLLLAGYA- 516 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~--~~h~~~VtsLaf-S~DG~~LasG~~- 516 (1950)
.+..|.++++++ .++++++.+|.|.+||... ... ..+...+ ..+...+.+|+| .++|..+++++.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-------~~~--~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~ 98 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------RFK--FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 98 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-------CEE--EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCC-------cEE--EEecccCCCcccccCceEEEEEcCCCeEEEEcCCC
Confidence 456799999975 6677778899999998632 111 1111111 234567999999 588988888864
Q ss_pred CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 517 DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
++.|.+|| .+|+.+..+...+...+..++|.++ ++ +.++....+.|+...
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~-----g~-l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK-----GR-IIVVECKVMRVIIFD 148 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT-----SC-EEEEETTTTEEEEEC
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC-----CC-EEEEECCCCEEEEEc
Confidence 89999999 6788877775456678899999986 33 455544445454443
No 171
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.0013 Score=62.99 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=38.0
Q ss_pred cccCCCcccccccccccC---------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1751 YAPRSLLCCICNCLLTKN---------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~---------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
|......|.||...+... .....++...|||.||..|+. +=+. ....||+|...-.
T Consensus 11 ~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~-~Wl~----~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 11 WDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMS-LWVK----QNNRCPLCQQDWV 75 (81)
T ss_dssp CSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHH-HHTT----TCCBCTTTCCBCC
T ss_pred ecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHH-HHHH----hCCCCCCcCCCcc
Confidence 446678999999988653 112234555699999999995 2222 2358999987543
No 172
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=96.33 E-value=0.012 Score=71.19 Aligned_cols=88 Identities=18% Similarity=0.168 Sum_probs=63.7
Q ss_pred EEEEEcCCEEEEEeC-----------CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 448 QVLAVHPSFIAVGMS-----------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 448 t~ia~s~~~IAvGts-----------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.++.++++.+.+..+ .+.|.+||.+.. +.+- ....+. +.+|+|||||++|+++..
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~---~i~~~~--p~~ia~spdg~~l~v~n~ 324 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVA---RIPGRD--ALSMTIDQQRNLMLTLDG 324 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEE---EEECTT--CCEEEEETTTTEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEE---EEecCC--eeEEEECCCCCEEEEeCC
Confidence 344455566666544 347999998541 2221 111122 999999999999999987
Q ss_pred CCcEEEEECCCC--ceeeeeccCcCCCeEEEEEecCC
Q 000170 517 DGHVTVWDVQRA--SAAKVITGEHTSPVVHTLFLGQD 551 (1950)
Q Consensus 517 dG~I~lWDl~~g--~~l~tl~~~H~~~I~~v~F~~d~ 551 (1950)
|+|.+||+.++ ++++++. .+...-..++|.|++
T Consensus 325 -~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 325 -GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVG 359 (361)
T ss_dssp -SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCS
T ss_pred -CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCC
Confidence 99999999999 9988874 566677788999873
No 173
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.30 E-value=7.4 Score=54.73 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=58.6
Q ss_pred HHHHHhhcCchHHHHHHhhCC-CCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhhHHH
Q 000170 1480 YLELLCRYERDSVLKFLETFD-SYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELNDKFA 1546 (1950)
Q Consensus 1480 YIeLLCqydP~~Vl~fLqt~~-~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~~l~ 1546 (1950)
+-.|+++|.|+++.+.++.+. ..++.++++.|++...++.++|||-+-|++..|+..+++.....++
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~ 1387 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 1387 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhh
Confidence 445666999999999999854 4788999999999999999999999999999999999988776654
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.21 E-value=0.067 Score=63.47 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=70.1
Q ss_pred cCCCcEEEEEcC--CEEEEEeCC------------------------CcEEEEeCCCCCCccCcccceeeeecccCCCCC
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSK------------------------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSP 496 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~------------------------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~ 496 (1950)
..|.|+++|+++ ++++++..+ |.|.+||...+ +.+. ..+..+.
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---------~~~~--~~~~~~~ 90 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---------EILQ--SSGKNLF 90 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---------CEEE--EECTTTC
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---------eEEe--ccCCCcc
Confidence 578899999986 566666666 47999987421 2111 1223455
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEEECCCCc-eeeeec--------cCcCCCeEEEEEecC
Q 000170 497 APVTAMCFNQPGDLLLAGYADGHVTVWDVQRAS-AAKVIT--------GEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~-~l~tl~--------~~H~~~I~~v~F~~d 550 (1950)
.....|+|++||..+++...++.|++||..... .+.++. .+|-....+|+|.++
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~ 153 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS 153 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC
Confidence 679999999999999999999999999986442 555552 245567899999983
No 175
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.15 E-value=0.0041 Score=63.14 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=38.1
Q ss_pred cCCCcccccccccccCC------------CCCeEEEecCCCccccccccccccc-CCCCCCCCCCCcCCCcCc
Q 000170 1753 PRSLLCCICNCLLTKNS------------SSFQIRVFNCGHATHIQCELLENES-SSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~------------~~~~ivVF~CGHafH~~CL~~en~g-~~~~~~~~CpiC~~~~~~ 1812 (1950)
+....|.||...+..+. ....+++..|||.||..|+.. -+. .+......||+|...-..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~-wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLA-MYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHH-HHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHH-HHHcccCCCCCcCCCCCCccCC
Confidence 34578999999886431 112355778999999999952 111 111134689999875543
No 176
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.15 E-value=0.14 Score=63.86 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=56.8
Q ss_pred HHHHhhcCchHHHHHHhhC-CCCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhh
Q 000170 1481 LELLCRYERDSVLKFLETF-DSYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELND 1543 (1950)
Q Consensus 1481 IeLLCqydP~~Vl~fLqt~-~~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~ 1543 (1950)
--|.|+|.|+++.+.|+.+ ...++.++++.|++.....+++|||-.-|++..|+..+++...+
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 4577799999999999985 45899999999999999999999999999999999999877654
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=96.10 E-value=0.027 Score=67.31 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=61.1
Q ss_pred EEEcCCEEEEEeC-CCc--EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 450 LAVHPSFIAVGMS-KGA--IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 450 ia~s~~~IAvGts-~G~--I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
+++++++||.++. +|. |.+||...+ +...+ ...+...+.+++|||||++|+.+..++.|.+||+.
T Consensus 43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g---------~~~~l---t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (388)
T 3pe7_A 43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQ---------VATQL---TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA 110 (388)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTC---------EEEEC---CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred CCCCCCEEEEEEcCCCCceEEEEeCCCC---------ceEEe---eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4566789999888 674 788887431 21221 12344455567899999999999999999999999
Q ss_pred CCceeeeeccCcCCCeEEEEE--ecC
Q 000170 527 RASAAKVITGEHTSPVVHTLF--LGQ 550 (1950)
Q Consensus 527 ~g~~l~tl~~~H~~~I~~v~F--~~d 550 (1950)
+++...... .|...+....| .++
T Consensus 111 ~g~~~~~~~-~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 111 TLEENVVYQ-VPAEWVGYGTWVANSD 135 (388)
T ss_dssp TCCEEEEEE-CCTTEEEEEEEEECTT
T ss_pred CCcceeeee-chhhcccccceeECCC
Confidence 998766554 55555555555 444
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=96.08 E-value=0.085 Score=61.87 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=69.8
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC---
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD--- 517 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d--- 517 (1950)
....|.++++++ .++++++.+|.|.+||...+ ....+. . .+...|.+|+|++||+++++++.+
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-------~~~~~~---~--~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-------EIKRPF---V--SHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-------CEEEEE---E--CSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-------cEEEEe---e--CCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 445678888874 66778889999999997431 111111 1 134679999999999998888877
Q ss_pred -CcEEEEECCCCceeeeec-cCcCCCeEEEEEecC
Q 000170 518 -GHVTVWDVQRASAAKVIT-GEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 518 -G~I~lWDl~~g~~l~tl~-~~H~~~I~~v~F~~d 550 (1950)
+.|.+||..+++....+. ..+...+.+++|.++
T Consensus 111 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 111 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred CceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence 789999999887654443 234567999999986
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.05 E-value=0.032 Score=66.24 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=78.7
Q ss_pred CCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC------CCCEEEEe
Q 000170 444 HGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ------PGDLLLAG 514 (1950)
Q Consensus 444 ~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~------DG~~LasG 514 (1950)
+..|..|++++ .++++...++.|.+||...+ +.+. ......+...+.+++|+| +|...+++
T Consensus 195 ~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---------~~~~-~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~ 264 (329)
T 3fvz_A 195 FSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---------EFVR-EIKHASFGRNVFAISYIPGFLFAVNGKPYFGD 264 (329)
T ss_dssp ESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEE-EECCTTTTTCEEEEEEETTEEEEEECCCCTTC
T ss_pred cCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---------cEEE-EEeccccCCCcceeeecCCEEEEeCCCEEecc
Confidence 44588999864 45666677889999997421 1111 112234567899999999 66666666
Q ss_pred cCCCcEEEEECCCCceeeeec--cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 515 YADGHVTVWDVQRASAAKVIT--GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~--~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+.++.|++||+.+|+.+.++. .+|......|+|.++ + .+.|+....+.|+...
T Consensus 265 ~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d-----G-~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 265 QEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED-----G-TVYIGDAHTNTVWKFT 319 (329)
T ss_dssp SCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT-----S-EEEEEESSSCCEEEEE
T ss_pred CCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC-----C-CEEEEECCCCEEEEEe
Confidence 777799999999999988874 367778999999986 3 4556555554444433
No 180
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=95.98 E-value=0.0032 Score=55.23 Aligned_cols=47 Identities=30% Similarity=0.640 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCCCeEEEec-CCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFN-CGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~-CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|.+|...+.... ..++.. |||.||..|+. +-+. ....||+|...
T Consensus 5 ~~~C~IC~~~~~~~~---~~~~~~~C~H~f~~~Ci~-~w~~----~~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGE---EARFLPRCGHGFHAECVD-MWLG----SHSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTS---CCEECSSSCCEECTTHHH-HTTT----TCCSCSSSCCC
T ss_pred CCcCccCCccccCCC---ceEECCCCCCcccHHHHH-HHHH----cCCcCcCCCCE
Confidence 568999998886542 345565 99999999995 2221 24689999753
No 181
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=95.95 E-value=0.0026 Score=55.77 Aligned_cols=48 Identities=31% Similarity=0.484 Sum_probs=35.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|.+|...+... ...+++..|||.||..|+. +-+.. ...||+|...
T Consensus 5 ~~~C~IC~~~~~~~--~~~~~~~~CgH~fc~~Ci~-~~~~~----~~~CP~Cr~~ 52 (55)
T 2ecm_A 5 SSGCPICLEDIHTS--RVVAHVLPCGHLLHRTCYE-EMLKE----GYRCPLCSGP 52 (55)
T ss_dssp CCSCTTTCCCCCTT--TSCEEECTTSCEEETTHHH-HHHHH----TCCCTTSCCS
T ss_pred CCcCcccChhhcCC--CcCeEecCCCCcccHHHHH-HHHHc----CCcCCCCCCc
Confidence 57899999887643 2357889999999999995 22211 2689999753
No 182
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.91 E-value=0.0029 Score=59.41 Aligned_cols=51 Identities=25% Similarity=0.617 Sum_probs=37.1
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
....|.+|...+..+ ..+++..|||.||..|+.. -+.. ...||+|...-..
T Consensus 22 ~~~~C~IC~~~~~~~---~~~~~l~C~H~fh~~Ci~~-w~~~----~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESR---QLLRVLPCNHEFHAKCVDK-WLKA----NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBT---CEEEEETTTEEEETTHHHH-HHHH----CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCC---CeEEEECCCCHhHHHHHHH-HHHc----CCcCcCcCCcCCC
Confidence 357899999887664 3578889999999999952 2211 3589999865433
No 183
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.87 E-value=0.0041 Score=58.73 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=35.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+. .+++..|||.||..|+. +-+. ....||+|...-
T Consensus 15 ~~~C~IC~~~~~~~~---~~~~~~C~H~fc~~Ci~-~~~~----~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALGE---SVRQLPCNHLFHDSCIV-PWLE----QHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTTS---CEEECTTSCEEETTTTH-HHHT----TTCSCTTTCCCC
T ss_pred CCCCeeCCccccCCC---CEEEeCCCCeecHHHHH-HHHH----cCCcCcCcCCcc
Confidence 578999998876542 47788999999999995 2221 236899998654
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.85 E-value=0.04 Score=64.32 Aligned_cols=99 Identities=6% Similarity=0.015 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCC-CCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 000170 455 SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSP-APVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 455 ~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~-~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
++|++|+.++.|.+||.+.+ + +.|.... +. ..+.+++++|||++|++ .++.|..||. +|+.+..
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG---------~-~~w~~~~--~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~ 70 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTK---------E-IVWEYPL--EKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWN 70 (276)
T ss_dssp EEEEECTTCSEEEEEETTTT---------E-EEEEEEC--CTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEE
T ss_pred cEEEeeCCCCEEEEEECCCC---------e-EEEEeCC--CccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEE
Confidence 78999999999999997432 3 2333222 22 46899999999999994 3778999999 8998888
Q ss_pred eccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 534 ITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+..++...+.++.++++ +++++..+++.+.|+..+
T Consensus 71 ~~~~~~~~~~~~~~~~d-----G~~lv~~~~~~~~v~~vd 105 (276)
T 3no2_A 71 IAAPAGCEMQTARILPD-----GNALVAWCGHPSTILEVN 105 (276)
T ss_dssp EECCTTCEEEEEEECTT-----SCEEEEEESTTEEEEEEC
T ss_pred EcCCCCccccccEECCC-----CCEEEEecCCCCEEEEEe
Confidence 86444467889999987 456666555466666554
No 185
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.85 E-value=0.014 Score=61.53 Aligned_cols=44 Identities=27% Similarity=0.553 Sum_probs=32.3
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|...+.. .++..|||.||..|+. +-.. ....||+|...-
T Consensus 54 ~~C~iC~~~~~~------~~~~~CgH~fc~~Ci~-~~~~----~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIE------AVTLNCAHSFCSYCIN-EWMK----RKIECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSS------EEEETTSCEEEHHHHH-HHTT----TCSBCTTTCCBC
T ss_pred CCCcccCcccCC------ceECCCCCCccHHHHH-HHHH----cCCcCCCCCCcC
Confidence 469999987754 3667999999999985 2221 246899997643
No 186
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.78 E-value=0.0036 Score=63.17 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=38.6
Q ss_pred cccCCCcccccccccccC------------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1751 YAPRSLLCCICNCLLTKN------------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~------------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
|......|.||...+... .....++.-.|||.||..|+.. =+. ....||+|...-
T Consensus 33 ~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~-Wl~----~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR-WLK----TRQVCPLDNREW 99 (106)
T ss_dssp ESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHH-HHT----TCSBCSSSCSBC
T ss_pred cCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHH-HHH----cCCcCcCCCCcc
Confidence 334578999999888743 1123478889999999999952 222 236899998753
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=95.69 E-value=0.052 Score=63.92 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=61.7
Q ss_pred cEEEEEcCCEEEEEe---------CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 447 PQVLAVHPSFIAVGM---------SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 447 pt~ia~s~~~IAvGt---------s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+...+++|++||... .++.|.+||...+ +...+ +.+++++|||||++||.+..+
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~---------~~~~l--------~~~~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNN---------ARRFI--------ENATMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTC---------CEEEE--------ESCEEEEECTTSSEEEEEEEE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCC---------ceEEc--------ccCCCeEECCCCCEEEEEEec
Confidence 334444777777642 2567889987431 11121 458999999999999988754
Q ss_pred C-----cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEe
Q 000170 518 G-----HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 518 G-----~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
+ .|.+||+.+|+..+... .+ . |.+++|++| +..++.++
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l~~-~~-~-~~~~~wspd-----g~~l~~~~ 122 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKILE-AK-N-IRSLEWNED-----SRKLLIVG 122 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEE-ES-E-EEEEEECTT-----SSEEEEEE
T ss_pred cCCCcceEEEEECCCCceEEEEc-CC-C-ccceeECCC-----CCEEEEEE
Confidence 3 48889999888655443 33 3 999999998 34455554
No 188
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.65 E-value=0.12 Score=59.67 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=78.0
Q ss_pred CCCcEEEEEc----C--CEEEEE-eCCCcEEEEeCCCCCCccCcccceeeeecccCCCCC-CCeEEEEEcCCCCEEEEec
Q 000170 444 HGSPQVLAVH----P--SFIAVG-MSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSP-APVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 444 ~G~pt~ia~s----~--~~IAvG-ts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~-~~VtsLafS~DG~~LasG~ 515 (1950)
.+.|..++++ + ++|.++ +.++.|.+||.... ......... . ....+. +.+..|++++||...++.+
T Consensus 171 ~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~----g~~~~~~~~-~-~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 171 FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP----AKIENKKVW-G-HIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET----TEEEEEEEE-E-ECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCC----CccccceEE-E-ECCCCCCCCCCceEECCCCCEEEEEc
Confidence 4557777777 5 356555 56789999986310 000000011 1 122233 6689999999999999998
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.+|.|..||..+|+.+..+. .+...+.+++|.++ ++.+.++....|.|+..
T Consensus 245 ~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~d-----g~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 245 GSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQ-----TKTIFVTEHENNAVWKF 295 (314)
T ss_dssp TTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTT-----SSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCC-----CCEEEEEeCCCCeEEEE
Confidence 99999999999888777775 56678999999876 45566666555544443
No 189
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=95.52 E-value=0.0036 Score=57.41 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+..+ .++..|||.||..|+.. -... ...||+|...-
T Consensus 4 ~~~~C~IC~~~~~~~-----~~~~~C~H~fc~~Ci~~-~~~~----~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNY-----SMALPCLHAFCYVCITR-WIRQ----NPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSC-----EEETTTTEEESTTHHHH-HHHH----SCSTTTTCCCC
T ss_pred CCCCCeeCCccccCC-----cEecCCCCeeHHHHHHH-HHhC----cCcCcCCChhh
Confidence 356899999876543 57889999999999852 2221 36899998654
No 190
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.45 E-value=0.0039 Score=58.23 Aligned_cols=48 Identities=25% Similarity=0.482 Sum_probs=35.6
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ..+++..|||.||..|+. +-+.. ...||+|...-
T Consensus 15 ~~~C~IC~~~~~~~---~~~~~~~C~H~f~~~Ci~-~~~~~----~~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAVCLEDFKPR---DELGICPCKHAFHRKCLI-KWLEV----RKVCPLCNMPV 62 (74)
T ss_dssp SCBCSSSCCBCCSS---SCEEEETTTEEEEHHHHH-HHHHH----CSBCTTTCCBC
T ss_pred CCCCcCCCcccCCC---CcEEEcCCCCEecHHHHH-HHHHc----CCcCCCcCccc
Confidence 57899999987664 247788999999999995 22211 25899998643
No 191
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.40 E-value=0.0059 Score=56.71 Aligned_cols=49 Identities=27% Similarity=0.616 Sum_probs=34.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+.. .++..|||.||..|+.. -.. .......||+|...-
T Consensus 19 ~~~~C~IC~~~~~~------~~~~~CgH~fC~~Ci~~-~~~-~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQK------PVTIDCGHNFCLKCITQ-IGE-TSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSS------EEECTTCCEEEHHHHHH-HCS-SSCSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCC------eEEcCCCChhhHHHHHH-HHH-cCCCCCCCCCCCCcC
Confidence 35789999987764 35569999999999952 221 112346899998643
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=95.37 E-value=0.052 Score=71.61 Aligned_cols=100 Identities=8% Similarity=0.015 Sum_probs=68.0
Q ss_pred cEEEEEc--CCEEEEEeCCC-----cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 447 PQVLAVH--PSFIAVGMSKG-----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~G-----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...++++ +++||.+.+++ .|.+||+..+ +.... .. ....+.+++|||||++|+.+..++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---------~~~~~--~~--~~~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---------KELPD--VL--ERVKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---------EEEEE--EE--EEECSCCEEECTTSSEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---------CCCcc--cc--cCcccceEEEEeCCCEEEEEEECCc
Confidence 4455555 48999887765 8999998542 11111 11 1123778999999999999988877
Q ss_pred ----------------EEEEECCCCcee--eeecc-CcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 520 ----------------VTVWDVQRASAA--KVITG-EHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 520 ----------------I~lWDl~~g~~l--~tl~~-~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
|.+|++.+++.. ..... .|...+.++.|++| +..+++++.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-----g~~l~~~~~ 252 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-----GRYVLLSIR 252 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-----SCEEEEEEE
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-----CCEEEEEEE
Confidence 999999988732 22222 35667899999998 345555553
No 193
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=95.36 E-value=0.005 Score=60.18 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=35.5
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|...+... ..+++..|||.||..|+. +-+. ....||+|...
T Consensus 39 ~~~~C~IC~~~~~~~---~~~~~l~C~H~Fh~~Ci~-~wl~----~~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG---DVATELPCHHYFHKPCVS-IWLQ----KSGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTT---CEEEEETTTEEEEHHHHH-HHHT----TTCBCTTTCCB
T ss_pred CCCCCcccChhhcCC---CcEEecCCCChHHHHHHH-HHHH----cCCcCcCcCcc
Confidence 457899999877653 357888999999999985 2221 23589999853
No 194
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=95.34 E-value=0.0048 Score=56.82 Aligned_cols=50 Identities=24% Similarity=0.445 Sum_probs=36.0
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
....|.+|...+... ..+++..|||.||..|+.. -+.. ...||+|...-.
T Consensus 13 ~~~~C~IC~~~~~~~---~~~~~~~C~H~fc~~Ci~~-~~~~----~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 13 TEEKCTICLSILEEG---EDVRRLPCMHLFHQVCVDQ-WLIT----NKKCPICRVDIE 62 (69)
T ss_dssp CCCSBTTTTBCCCSS---SCEEECTTSCEEEHHHHHH-HHHH----CSBCTTTCSBSC
T ss_pred CCCCCeeCCccccCC---CcEEEeCCCCHHHHHHHHH-HHHc----CCCCcCcCcccc
Confidence 357899999877543 2478889999999999952 2111 246999986543
No 195
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.33 E-value=0.12 Score=59.62 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=72.0
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcc-cceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSM-DSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~-~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
..+.|..+++++ +++++++.++.|.+||.... ... .... .+ ..+.+.+..|+|++||...++. ++.
T Consensus 170 ~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~----g~~~~~~~-~~----~~~~~~p~~i~~d~~G~l~v~~--~~~ 238 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNAR----GETEYQGV-HF----TVEPGKTDGLRVDAGGLIWASA--GDG 238 (296)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSS----SCEEEEEE-EE----CCSSSCCCSEEEBTTSCEEEEE--TTE
T ss_pred CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCC----CcCcCCCe-Ee----eCCCCCCCeEEECCCCCEEEEc--CCe
Confidence 455678888874 67777888899999997410 000 0011 11 1245667889999999977777 889
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
|.+||.. |+.+..+. .+.. +++++|.++ .+..+.+++..
T Consensus 239 v~~~~~~-g~~~~~~~-~~~~-~~~~~f~~~----d~~~L~v~t~~ 277 (296)
T 3e5z_A 239 VHVLTPD-GDELGRVL-TPQT-TSNLCFGGP----EGRTLYMTVST 277 (296)
T ss_dssp EEEECTT-SCEEEEEE-CSSC-CCEEEEEST----TSCEEEEEETT
T ss_pred EEEECCC-CCEEEEEE-CCCC-ceeEEEECC----CCCEEEEEcCC
Confidence 9999986 78777775 5555 999999632 14567776653
No 196
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.32 E-value=0.056 Score=70.13 Aligned_cols=92 Identities=10% Similarity=-0.012 Sum_probs=59.8
Q ss_pred EEEcCCEEEEEeCCC--------cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC--c
Q 000170 450 LAVHPSFIAVGMSKG--------AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG--H 519 (1950)
Q Consensus 450 ia~s~~~IAvGts~G--------~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG--~ 519 (1950)
+.+++++||.++.++ .|.+||+... ....+...+. ..+.+.+.+++|||||++++++..+| .
T Consensus 195 ~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~-----g~~~~~~~l~---~~~~~~~~~~~~spdg~l~~~~~~~~~~~ 266 (662)
T 3azo_A 195 LSPDGRQAVWLAWDHPRMPWEGTELKTARVTED-----GRFADTRTLL---GGPEEAIAQAEWAPDGSLIVATDRTGWWN 266 (662)
T ss_dssp ECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT-----SCEEEEEEEE---EETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred ECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC-----CcccccEEeC---CCCCceEcceEECCCCeEEEEECCCCCeE
Confidence 445568999877553 7999998410 0000111211 12457899999999999999999899 6
Q ss_pred EEEEECCCCceeeeeccCcCCC--------eEEEEEecC
Q 000170 520 VTVWDVQRASAAKVITGEHTSP--------VVHTLFLGQ 550 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~--------I~~v~F~~d 550 (1950)
|.+||+.+++..... .+|... +.+++|+++
T Consensus 267 l~~~~~~~~~~~~l~-~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 267 LHRVDPATGAATQLC-RREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp EEEECTTTCCEEESS-CCSSBSSCCCCSTTCCSEEECTT
T ss_pred EEEEECCCCceeecc-cccccccCccccccCceEeEeCC
Confidence 777777777764433 344322 667888875
No 197
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.30 E-value=0.0045 Score=56.01 Aligned_cols=44 Identities=30% Similarity=0.717 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLC 1806 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC 1806 (1950)
...|.+|...+..+ ++..|||.||..|+.. -... .+....||+|
T Consensus 20 ~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP------VTIDCGHNFCLKCITQ-IGET-SCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC------EECTTSSEECHHHHHH-HHHH-CSSCCCCSCC
T ss_pred CCCCCcCCchhCCe------EEeCCCCcchHHHHHH-HHHc-CCCCCcCcCC
Confidence 57899999877654 4459999999999952 2211 1134689998
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=95.26 E-value=0.48 Score=55.16 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=38.2
Q ss_pred cCCCCEEEEecCCCcEEEEECCCCceeeeeccCcC-CCeEEEEEecC
Q 000170 505 NQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHT-SPVVHTLFLGQ 550 (1950)
Q Consensus 505 S~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~-~~I~~v~F~~d 550 (1950)
|..|+.|++|+.++.|.+||.++|+.+..+. .|. ..+.++.++++
T Consensus 2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-~~~~~~~~~~~~~pd 47 (276)
T 3no2_A 2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYP-LEKGWECNSVAATKA 47 (276)
T ss_dssp -CCCEEEEECTTCSEEEEEETTTTEEEEEEE-CCTTCCCCEEEECTT
T ss_pred CCCCcEEEeeCCCCEEEEEECCCCeEEEEeC-CCccCCCcCeEECCC
Confidence 4567899999999999999999999988886 444 57899999987
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=95.21 E-value=0.043 Score=72.21 Aligned_cols=101 Identities=6% Similarity=-0.032 Sum_probs=65.2
Q ss_pred cEEEEEc--CCEEEEEe-----CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 447 PQVLAVH--PSFIAVGM-----SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGt-----s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+..++++ +++||.+. .+..|++||+..+ +.... ... .....++++|||||+.|+.+..++.
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg---------~~~~~-~~~--~~~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG---------EWSKV-DVI--EGGKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC---------CBCSS-CCB--SCCTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC---------CCcCC-ccc--CcccccceEEecCCCEEEEEEecCC
Confidence 4555555 48899543 3468999998542 11100 001 1112268999999999999998877
Q ss_pred -------------EEEEECCCCcee--eeec-cCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 520 -------------VTVWDVQRASAA--KVIT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 520 -------------I~lWDl~~g~~l--~tl~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
|++|++.+++.. .... ..|...+.++.|++| +..+++++.
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD-----G~~l~~~~~ 246 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD-----GKYLFVYIL 246 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT-----SCCEEEEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC-----CCEEEEEEe
Confidence 999999988732 2222 145678999999998 344554443
No 200
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.11 E-value=0.0041 Score=63.82 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=2.6
Q ss_pred cccCCCcccccccccccC------------CCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1751 YAPRSLLCCICNCLLTKN------------SSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~------------~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
|......|.||...+... .....++.-.|||.||..|+.. =+. ....||+|...
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~-Wl~----~~~~CP~Cr~~ 109 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR-WLK----TRQVCPLDNRE 109 (117)
T ss_dssp ECCCC------------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHH-HHH----cCCcCCCCCCe
Confidence 445568999999988642 1112344458999999999952 111 23689999865
No 201
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=95.04 E-value=0.11 Score=61.03 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=61.9
Q ss_pred CCcEEEEEc--CCEEEEEeCC---Cc--EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC
Q 000170 445 GSPQVLAVH--PSFIAVGMSK---GA--IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD 517 (1950)
Q Consensus 445 G~pt~ia~s--~~~IAvGts~---G~--I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d 517 (1950)
+.+.+++.+ +++||.+..+ |. |.+||...+ +...+. . +.+ |.+++|||||++|+.+..+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---------~~~~l~-~---~~~-~~~~~wspdg~~l~~~~~~ 124 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---------SSKKIL-E---AKN-IRSLEWNEDSRKLLIVGFK 124 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---------EEEEEE-E---ESE-EEEEEECTTSSEEEEEEEC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---------ceEEEE-c---CCC-ccceeECCCCCEEEEEEcc
Confidence 445666666 5788887654 33 777776421 111211 1 123 9999999999999988642
Q ss_pred ---------------------------CcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 518 ---------------------------GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 518 ---------------------------G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+.|.+||+.+|+.++.+.. . .+..+.|++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spd 181 (347)
T 2gop_A 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRD 181 (347)
T ss_dssp CCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETT
T ss_pred CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCC
Confidence 6799999999987566653 3 8899999987
No 202
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.94 E-value=0.0075 Score=53.32 Aligned_cols=45 Identities=22% Similarity=0.453 Sum_probs=31.9
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLC 1806 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC 1806 (1950)
....|.+|...+..+ ++..|||.||..|+.. -..+ ......||+|
T Consensus 14 ~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~~-~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEP------VIIECGHNFCKACITR-WWED-LERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSC------CCCSSCCCCCHHHHHH-HTTS-SCCSCCCSCC
T ss_pred cCCCCccCCcccCcc------EeCCCCCccCHHHHHH-HHHh-cCCCCCCCCC
Confidence 357899999888765 3468999999999952 2111 1134789998
No 203
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=94.90 E-value=0.1 Score=63.18 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=59.8
Q ss_pred EEEEcC--CEEEEEeC----------CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 449 VLAVHP--SFIAVGMS----------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 449 ~ia~s~--~~IAvGts----------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.+++++ ++++++.. ++.|.+||.+.. .....+........+......|+|||||++|.++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~ 127 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL------TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA 127 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC------cEEEEEEcCccccccCCCcceEEECCCCCEEEEECC
Confidence 777775 68888763 567999998531 111112111000012245778999999999998863
Q ss_pred --CCcEEEEECCCCceeee-eccCcCCCeEEEEEecC
Q 000170 517 --DGHVTVWDVQRASAAKV-ITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 517 --dG~I~lWDl~~g~~l~t-l~~~H~~~I~~v~F~~d 550 (1950)
+++|.+||+.+++.+.+ +. +. .-..+.+.++
T Consensus 128 ~~~~~v~v~d~~~~~~~~~~i~--~~-~~~~v~~~p~ 161 (361)
T 2oiz_A 128 SPATSIGIVDVAKGDYVEDVTA--AA-GCWSVIPQPN 161 (361)
T ss_dssp SSSEEEEEEETTTTEEEEEEGG--GT-TEEEEEECTT
T ss_pred CCCCeEEEEECCCCcEEEEEec--CC-CcceeEEcCC
Confidence 68999999999998887 64 21 2233556665
No 204
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.88 E-value=0.0093 Score=55.34 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=33.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+.. .++..|||.||..|+. +-+. ....||+|...-
T Consensus 14 ~~~~C~IC~~~~~~------~~~~~CgH~fC~~Ci~-~~~~----~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTCVH------PVSLPCKHVFCYLCVK-GASW----LGKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBCSS------EEEETTTEEEEHHHHH-HCTT----CSSBCSSSCCBC
T ss_pred CCCCCccCCcccCC------CEEccCCCHHHHHHHH-HHHH----CCCcCcCcCchh
Confidence 35789999977644 3667999999999985 2111 236899998643
No 205
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=94.77 E-value=0.15 Score=59.56 Aligned_cols=111 Identities=13% Similarity=0.105 Sum_probs=76.2
Q ss_pred CCCcEEEEEcC--CEE-EEEeCCCcEEEEeCC--CCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 444 HGSPQVLAVHP--SFI-AVGMSKGAIVVVPGK--YSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~I-AvGts~G~I~vfd~k--~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
...|..+++++ +++ ++.+.++.|.+||+. .+ .......+. ....+.+....|++++||.+.++.+.+|
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G-----~~~~~~~~~--~~~~~~~~p~g~~~d~~G~lwva~~~~~ 220 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTG-----QISNRRSVY--KLEKEEQIPDGMCIDAEGKLWVACYNGG 220 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTC-----CEEEEEEEE--ECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCC-----cccCcEEEE--ECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence 44577788764 555 556778999999862 11 000011111 1122345788999999999999999899
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCC
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTK 566 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~ 566 (1950)
.|..||..+|+.+..+. .+...+++++|.+. .+.++.|++-..
T Consensus 221 ~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~----d~~~L~vt~~~~ 263 (297)
T 3g4e_A 221 RVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGK----NYSEMYVTCARD 263 (297)
T ss_dssp EEEEECTTTCCEEEEEE-CSSSBEEEEEEESG----GGCEEEEEEBCT
T ss_pred EEEEEcCCCceEEEEEE-CCCCCceEEEEeCC----CCCEEEEEcCCc
Confidence 99999999999988886 56678999999942 145666665443
No 206
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.62 E-value=0.01 Score=56.98 Aligned_cols=53 Identities=28% Similarity=0.512 Sum_probs=36.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+.... ...++..|||.||..|+.. -... ......||+|...-
T Consensus 14 ~~~~C~IC~~~~~~~~--~~~~~~~CgH~fC~~Ci~~-~~~~-~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMESFTEEQ--LRPKLLHCGHTICRQCLEK-LLAS-SINGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCBCCTTS--SCEEECSSSCEEEHHHHHH-HHHH-CSSCBCCTTTCCCB
T ss_pred CCCCCccCCccccccC--CCeEECCCCChhhHHHHHH-HHHc-CCCCcCCCCCCCcc
Confidence 3578999998776532 2257789999999999952 1111 11246899998643
No 207
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.53 E-value=0.25 Score=63.82 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=69.9
Q ss_pred EEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC--CCceeee
Q 000170 456 FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ--RASAAKV 533 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~--~g~~l~t 533 (1950)
++++...+|.|.+||...+ +.+. ... ....+..++|||||++|.+++.+|.|.+||+. +++.+.+
T Consensus 169 ~~V~~~~~~~V~viD~~t~---------~v~~-~i~---~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTY---------EIKT-VLD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp EEEEETTTTEEEEEETTTC---------CEEE-EEE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE
T ss_pred EEEEeCCCCeEEEEECCCC---------eEEE-EEe---CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE
Confidence 4555667899999998431 1111 001 12356799999999999999999999999996 8888877
Q ss_pred eccCcCCCeEEEEEe----cCCCccCCceEEEEecCCceEEEEcc
Q 000170 534 ITGEHTSPVVHTLFL----GQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~----~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+..|. .-.+++|+ +| +..+.++....|.|.....
T Consensus 236 i~~G~--~P~~ia~s~~~~pD-----Gk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 236 IKIGS--EARSIETSKMEGWE-----DKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp EECCS--EEEEEEECCSTTCT-----TTEEEEEEEETTEEEEEET
T ss_pred EecCC--CCceeEEccccCCC-----CCEEEEEEccCCeEEEEEC
Confidence 75333 35799999 56 4567777766666655553
No 208
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=94.52 E-value=0.017 Score=54.15 Aligned_cols=47 Identities=30% Similarity=0.604 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCCCCeEEEec-CCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFN-CGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~-CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|...+..+ ++.. |||.||..|+.. -+..+ ....||+|...
T Consensus 14 ~~~~C~IC~~~~~~p------~~~~~CgH~fC~~Ci~~-~~~~~--~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDA------VVIPCCGNSYCDECIRT-ALLES--DEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTC------EECSSSCCEECTTHHHH-HHHHS--SSSCCSSSCCS
T ss_pred CCCCCcCCChHHhCC------eEcCCCCCHHHHHHHHH-HHHhc--CCCcCCCCCCc
Confidence 357899998877654 4467 999999999952 22211 13589999874
No 209
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=94.48 E-value=0.011 Score=55.70 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=34.9
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
+....|.+|...+..+ ++..|||.||..|+. +-+.. ....||+|...-
T Consensus 6 ~~~~~C~IC~~~~~~P------v~~~CgH~fc~~Ci~-~~~~~---~~~~CP~C~~~~ 53 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP------VIVSTGQTYERSSIQ-KWLDA---GHKTCPKSQETL 53 (78)
T ss_dssp SSSSSCTTTSCCCSSE------EEETTTEEEEHHHHH-HHHTT---TCCBCTTTCCBC
T ss_pred cccCCCCCccccccCC------EEcCCCCeecHHHHH-HHHHH---CcCCCCCCcCCC
Confidence 4568899999877654 456999999999995 22211 246899998643
No 210
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=94.47 E-value=0.0065 Score=54.70 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=35.9
Q ss_pred CCcccccccccccCC-CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+. ....+++..|||.||..|+. +-+.. ...||+|...-
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~-~~~~~----~~~CP~Cr~~~ 54 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKN----ANTCPTCRKKI 54 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHH-HHHHH----CSBCTTTCCBC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHH-HHHHc----CCCCCCCCccC
Confidence 467999998876531 12346888999999999995 22211 35899998643
No 211
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=94.44 E-value=0.35 Score=62.45 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=80.7
Q ss_pred CcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEc----CCCCEEEEe-cCCC
Q 000170 446 SPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFN----QPGDLLLAG-YADG 518 (1950)
Q Consensus 446 ~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS----~DG~~LasG-~~dG 518 (1950)
.|.++++++ +++.+++.+|.|.+||... .+.+.+..-..+ .....|+|| |||++|+++ +.+|
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~-------~t~~~v~~i~~G----~~P~~ia~s~~~~pDGk~l~v~n~~~~ 266 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWM-------KEPTTVAEIKIG----SEARSIETSKMEGWEDKYAIAGAYWPP 266 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTS-------SSCCEEEEEECC----SEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCC-------CCCcEeEEEecC----CCCceeEEccccCCCCCEEEEEEccCC
Confidence 466777764 7999999999999999831 011111100011 235789999 699988765 5669
Q ss_pred cEEEEECCCCceeeeeccC---------cC-CCeEEEEEecCCCccCCceEEEEecCCceEEEEccc
Q 000170 519 HVTVWDVQRASAAKVITGE---------HT-SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSLS 575 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~---------H~-~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ft 575 (1950)
+|.+||..+.+.++++..+ |. .+|..+.++++ +...++...+.|.|+...+.
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~-----~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY-----RPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS-----SSEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC-----CCEEEEEecCCCeEEEEecC
Confidence 9999999999998877521 33 37889999876 34567777888998888764
No 212
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.41 E-value=0.07 Score=63.72 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=47.7
Q ss_pred EEEcCCCCEEEEecC-CC--cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 502 MCFNQPGDLLLAGYA-DG--HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 502 LafS~DG~~LasG~~-dG--~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.+|||||++||.++. +| .|.+||+.+|+..+.. .+|...+..+.|++| +..++.++++ +.++...
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd-----g~~l~~~~~~-~~l~~~d 108 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD-----DDALFYVKDG-RNLMRVD 108 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT-----SSEEEEEETT-TEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC-----CCEEEEEeCC-CeEEEEE
Confidence 889999999999988 67 4999999998876544 477777777889998 3445555543 3444443
No 213
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.37 E-value=0.0087 Score=54.74 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=36.4
Q ss_pred CCCcccccccccccCC-CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|...+..+. ....+++..|||.||..|+.. -+.. ...||+|...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLKN----ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH-HHHH----CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHH-HHHc----CCCCCCCCCc
Confidence 4678999998876542 123468889999999999952 2211 3589999864
No 214
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.33 E-value=0.44 Score=53.66 Aligned_cols=111 Identities=9% Similarity=0.066 Sum_probs=72.6
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...|.+|++++ .++++...++.|.+||.... ..... ...+...+.+|+++++|...++...++.|.
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---------~~~~~---~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~ 216 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN---------NQVVL---PFTDITAPWGIAVDEAGTVYVTEHNTNQVV 216 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC---------CEEEC---CCSSCCSEEEEEECTTCCEEEEETTTSCEE
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCC---------ceEee---cccCCCCceEEEECCCCCEEEEECCCCcEE
Confidence 34678888874 55555556789999997421 11111 112236789999999999889988999999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+||..+..... ....+...+..++|.++ ++ +.++.-..|.|....
T Consensus 217 ~~~~~~~~~~~-~~~~~~~~p~~i~~~~~-----g~-l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 217 KLLAGSTTSTV-LPFTGLNTPLAVAVDSD-----RT-VYVADRGNDRVVKLT 261 (270)
T ss_dssp EECTTCSCCEE-CCCCSCSCEEEEEECTT-----CC-EEEEEGGGTEEEEEC
T ss_pred EEcCCCCccee-eccCCCCCceeEEECCC-----CC-EEEEECCCCEEEEEc
Confidence 99997655433 22234467889999876 33 555544455554443
No 215
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=94.20 E-value=0.0097 Score=54.88 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=36.8
Q ss_pred CCCcccccccccccCC-CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+..+. ....+++..|||.||..|+. +-+.. ...||+|...-
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~-~~~~~----~~~CP~Cr~~~ 61 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLKN----ANTCPTCRKKI 61 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHH-HHHHH----CSBCTTTCCBC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHH-HHHHc----CCCCCCCCCcc
Confidence 4578999998886531 12346888999999999995 22211 25899998643
No 216
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=94.15 E-value=0.019 Score=58.36 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=33.4
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++..|||.||..|+.. ... .....||+|...-
T Consensus 15 ~~~C~iC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~---~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEP------VTLPCNHTLCKPCFQS-TVE---KASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSC------EECTTSCEECHHHHCC-CCC---TTTSBCTTTCCBC
T ss_pred CCCCccCCcccCce------eEcCCCCHHhHHHHHH-HHh---HCcCCCCCCCccc
Confidence 36799999887764 4559999999999852 221 1246899998644
No 217
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.13 E-value=0.017 Score=54.35 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=34.5
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCC---CCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSS---KSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~---~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+..+ ++..|||.||..|+.. -.... ......||+|...-
T Consensus 11 ~~~~C~IC~~~~~~p------~~l~CgH~fC~~Ci~~-~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 11 EEVTCPICLELLTEP------LSLDCGHSLCRACITV-SNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCEETTTTEECSSC------CCCSSSCCCCHHHHSC-CCCCCSSSCCCCCCCSSSCCCC
T ss_pred cCCCCcCCCcccCCe------eECCCCCHHHHHHHHH-HHHhcccCCCCCCcCCCCCCcC
Confidence 357899999887664 3469999999999952 11110 01247899998654
No 218
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=94.10 E-value=0.31 Score=64.21 Aligned_cols=101 Identities=5% Similarity=-0.079 Sum_probs=66.5
Q ss_pred EEEcCCEEEEEeCCCc----------------EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE
Q 000170 450 LAVHPSFIAVGMSKGA----------------IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA 513 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~----------------I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las 513 (1950)
.+++++.|+.++.++. |.+|++..+. .... ++. ....+...+.+++|||||++|+.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-----~~~~-~v~--~~~~~~~~~~~~~~SpDg~~l~~ 249 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-----SEDI-LCA--EFPDEPKWMGGAELSDDGRYVLL 249 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-----GGCE-EEE--CCTTCTTCEEEEEECTTSCEEEE
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc-----ccce-EEe--ccCCCCeEEEEEEEcCCCCEEEE
Confidence 3344678999988876 9999985421 1111 221 23335667899999999999998
Q ss_pred ecC-----CCcEEEEECCC------Cc-eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 514 GYA-----DGHVTVWDVQR------AS-AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 514 G~~-----dG~I~lWDl~~------g~-~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
+.. +..|.+||+.+ +. ..+.+. .|...+.. .|+++ +..+++.++.
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~d-----g~~l~~~s~~ 306 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYD-YVTNE-----GTVFTFKTNR 306 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEE-EEEEE-----TTEEEEEECT
T ss_pred EEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEEE-EEecc-----CCEEEEEECC
Confidence 875 56899999987 54 455665 56556655 47766 3345555543
No 219
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=93.97 E-value=0.65 Score=54.26 Aligned_cols=113 Identities=12% Similarity=0.180 Sum_probs=69.9
Q ss_pred CCCcEEEEEcC--CEEEEEeCC----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC-
Q 000170 444 HGSPQVLAVHP--SFIAVGMSK----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA- 516 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~- 516 (1950)
.+.|.++++++ .+++.+..+ +.|.+||...+ ....+ +. ...+...+.++++++||..+++...
T Consensus 86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~-------~~~~~-~~--~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD-------NLQDI-IE--DLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-------SCEEE-EC--SSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC-------EEEEE-Ec--cCccCCcccceEECCCCCEEEEeccc
Confidence 35689999875 445544444 58999997431 11111 11 1123467999999999998887764
Q ss_pred -----CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 517 -----DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 517 -----dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
.+.|..||..+++..... .+...+..++|.++ +..+.++....+.|+...
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~d-----g~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTD-----EKVLWVTETTANRLHRIA 210 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTT-----SSEEEEEEGGGTEEEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCC-----CCEEEEEeCCCCeEEEEE
Confidence 366777776666554322 23346788999987 345556655555555544
No 220
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.93 E-value=0.013 Score=58.99 Aligned_cols=46 Identities=30% Similarity=0.504 Sum_probs=31.7
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..|.+|...+..+ ++..|||.||..|+.. -.... .....||+|...
T Consensus 22 ~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~~~-~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 22 LECPICLELIKEP------VSTKCDHIFCKFCMLK-LLNQK-KGPSQCPLCKND 67 (112)
T ss_dssp TSCSSSCCCCSSC------CBCTTSCCCCSHHHHH-HHHSS-SSSCCCTTTSCC
T ss_pred CCCcccChhhcCe------EECCCCCHHHHHHHHH-HHHhC-CCCCCCcCCCCc
Confidence 4799999877654 3469999999999852 22111 123589999753
No 221
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.89 E-value=0.018 Score=52.36 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=34.7
Q ss_pred CCccccccc-ccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNC-LLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k-~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|.. .+..+. ..+++..|||.||..|+.. .... ....||+|...-
T Consensus 3 ~~~C~IC~~~~~~~~~--~~~~~~~CgH~fC~~Ci~~-~~~~---~~~~CP~Cr~~~ 53 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS--LKLMVNVCGHTLCESCVDL-LFVR---GAGNCPECGTPL 53 (65)
T ss_dssp TTCCSTTTTHHHHCSS--CCEEECTTCCCEEHHHHHH-HHHT---TSSSCTTTCCCC
T ss_pred CCcCCcCCCCccCCCc--cCeecCCCCCHhHHHHHHH-HHHc---CCCcCCCCCCcc
Confidence 457999998 665542 2346789999999999852 2111 236799998654
No 222
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.82 E-value=0.032 Score=49.45 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
...|.+|...+..+ ++..|||.|+..|+.. ....||+|...-.
T Consensus 6 ~~~C~IC~~~~~~p------~~l~CgH~fC~~Ci~~--------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 6 FLRCQQCQAEAKCP------KLLPCLHTLCSGCLEA--------SGMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSCSSCBCC------SCSTTSCCSBTTTCSS--------SSSSCSSCCSSSS
T ss_pred CCCceEeCCccCCe------EEcCCCCcccHHHHcc--------CCCCCCcCCcEee
Confidence 46799999877664 4578999999999842 2368999986543
No 223
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.62 E-value=0.016 Score=53.94 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=33.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ +++..|||.||..|+.. -+. ....||+|...-
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~-~~~----~~~~CP~Cr~~~ 60 (72)
T 2djb_A 15 YILCSICKGYLIDA-----TTITECLHTFCKSCIVR-HFY----YSNRCPKCNIVV 60 (72)
T ss_dssp GGSCTTTSSCCSSC-----EECSSSCCEECHHHHHH-HHH----HCSSCTTTCCCC
T ss_pred CCCCCCCChHHHCc-----CEECCCCCHHHHHHHHH-HHH----cCCcCCCcCccc
Confidence 46899998877664 44449999999999952 221 136899998643
No 224
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.59 E-value=0.017 Score=54.90 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++..|||.||..|+.. -+. ....||+|...-
T Consensus 15 ~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~----~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNP------VVTKCRHYFCESCALE-HFR----ATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSE------EECTTSCEEEHHHHHH-HHH----HCSBCSSSCCBC
T ss_pred CCCCcCCCchhcCe------eEccCCCHhHHHHHHH-HHH----CCCcCCCcCccc
Confidence 46899999877553 4689999999999952 221 136899998654
No 225
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.58 E-value=0.015 Score=53.02 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=33.8
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+..+. +..|||.||..|+. +-.. .....||+|...-
T Consensus 14 ~~~~C~IC~~~~~~p~------~~~CgH~fC~~Ci~-~~~~---~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPK------QTECGHRFCESCMA-ALLS---SSSPKCTACQESI 60 (66)
T ss_dssp CCEECTTTCCEESSCC------CCSSSCCCCHHHHH-HHHT---TSSCCCTTTCCCC
T ss_pred cCCCCCCCChHhcCee------ECCCCCHHHHHHHH-HHHH---hCcCCCCCCCcCC
Confidence 3578999998877652 35999999999995 2221 1246899998643
No 226
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.50 E-value=0.019 Score=57.70 Aligned_cols=46 Identities=20% Similarity=0.545 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ +++..|||.||..|+. +-.. ....||+|...-
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~-~~~~----~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFIDA-----TTIIECLHSFCKTCIV-RYLE----TSKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSSE-----EEETTTCCEEEHHHHH-HHHT----SCSBCTTTCCBS
T ss_pred cCCCccCChHHhCc-----CEeCCCCChhhHHHHH-HHHH----hCCcCcCCCccc
Confidence 56899999877653 4444999999999985 2222 136899998643
No 227
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=0.017 Score=53.20 Aligned_cols=44 Identities=23% Similarity=0.536 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+.. ++..|||.||..|+. +-.. ....||+|...-
T Consensus 15 ~~~C~IC~~~~~~-------~~~~CgH~fc~~Ci~-~~~~----~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 15 EEECCICMDGRAD-------LILPCAHSFCQKCID-KWSD----RHRNCPICRLQM 58 (70)
T ss_dssp CCCCSSSCCSCCS-------EEETTTEEECHHHHH-HSSC----CCSSCHHHHHCT
T ss_pred CCCCeeCCcCccC-------cccCCCCcccHHHHH-HHHH----CcCcCCCcCCcc
Confidence 5789999875432 778999999999985 2211 347899997543
No 228
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=93.41 E-value=0.018 Score=59.37 Aligned_cols=45 Identities=20% Similarity=0.406 Sum_probs=32.8
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|...+..+ ++..|||.||..|+.. ... .....||+|...-
T Consensus 53 ~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~---~~~~~CP~Cr~~~ 97 (124)
T 3fl2_A 53 FQCICCQELVFRP------ITTVCQHNVCKDCLDR-SFR---AQVFSCPACRYDL 97 (124)
T ss_dssp TBCTTTSSBCSSE------EECTTSCEEEHHHHHH-HHH---TTCCBCTTTCCBC
T ss_pred CCCCcCChHHcCc------EEeeCCCcccHHHHHH-HHh---HCcCCCCCCCccC
Confidence 4799999877754 4569999999999952 221 1235899998654
No 229
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=93.40 E-value=0.016 Score=57.29 Aligned_cols=46 Identities=24% Similarity=0.382 Sum_probs=32.6
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ +++..|||.||..|+.. -.. ....||+|...-
T Consensus 22 ~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~-~~~----~~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNIA-----MIIPQCSHNYCSLCIRK-FLS----YKTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSSE-----EECTTTCCEEEHHHHHH-HHT----TCCBCTTTCCBC
T ss_pred CCCcccCChhhCCc-----CEECCCCCHhhHHHHHH-HHH----CCCCCCCCCCcC
Confidence 35799999877653 33348999999999852 221 236899998643
No 230
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.39 E-value=0.63 Score=53.61 Aligned_cols=117 Identities=9% Similarity=0.042 Sum_probs=70.1
Q ss_pred ccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE----
Q 000170 440 FRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA---- 513 (1950)
Q Consensus 440 f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las---- 513 (1950)
+....+.|.++++++ .+++....++.|.+||.+.+ ....+ ...........+..+++++||.++++
T Consensus 64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g-------~~~~~-~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~ 135 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG-------EWESI-ADSFEGKKLNSPNDVCLAPDGSLWFSDPTY 135 (296)
T ss_dssp EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC-------CEEEE-ECEETTEECCCCCCEEECTTSCEEEEECSH
T ss_pred EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC-------cEEEE-eeccCCCCCCCCCCEEECCCCCEEEECCcc
Confidence 334567789999875 55555445689999997432 11111 11111112346788999999999987
Q ss_pred ec-------------CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 514 GY-------------ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 514 G~-------------~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|. ..|.|..||.. ++.. .+. .+......++|+++ +..+ ++....+.|+...
T Consensus 136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-~~~~~~~gi~~s~d-----g~~l-v~~~~~~~i~~~~ 199 (296)
T 3e5z_A 136 GIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-RDRVKPNGLAFLPS-----GNLL-VSDTGDNATHRYC 199 (296)
T ss_dssp HHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-CCCSSEEEEEECTT-----SCEE-EEETTTTEEEEEE
T ss_pred ccccccccccccccCCCcEEEEECCC-CCEE-Eee-cCCCCCccEEECCC-----CCEE-EEeCCCCeEEEEE
Confidence 44 13456666655 5543 333 55667889999987 3445 5554455555443
No 231
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.35 E-value=0.18 Score=59.99 Aligned_cols=99 Identities=16% Similarity=0.090 Sum_probs=62.2
Q ss_pred cEEEEEc--CCEEEEEeCC-----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEec---
Q 000170 447 PQVLAVH--PSFIAVGMSK-----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGY--- 515 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~-----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~--- 515 (1950)
+..++.+ +++|+.++.+ +.|.+||...+ ... .+. ... .+. ++||+ ||++++++.
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g-------~~~--~l~-~~~----~~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL-------ENE--EVM-VMP----PCS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC-------CEE--EEE-ECC----SEE-EEEECSSSSEEEEEECCC
T ss_pred ccceEECCCCCEEEEEecCCCCccceEEEEECCCC-------CeE--Eee-eCC----CCC-CCccCCCCceEEEecCCc
Confidence 4455555 4677776544 44999998432 111 111 111 133 89999 999998764
Q ss_pred -------------CCCcEEEEECCCCceeeeeccCcCC-----------CeEEEEEecCCCccCCceEEEEecCCc
Q 000170 516 -------------ADGHVTVWDVQRASAAKVITGEHTS-----------PVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 516 -------------~dG~I~lWDl~~g~~l~tl~~~H~~-----------~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
.++.|.+||+.+++.. .+. .|.. .+.++.|++| +..++.+++..|
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~~~~~~~~~~~s~d-----g~~l~~~s~~~~ 373 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGDRQITHPHPSFTPN-----DDGVLFTSDFEG 373 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTBSSTTCCCCEECTT-----SSEEEEEECTTS
T ss_pred ceeeccccccccCCCCcEEEEecccCceE-Ecc-CCCCccccccccccCCCCCceEccC-----CCeEEEEecCCC
Confidence 3578999999988753 443 4433 2677899987 345666665554
No 232
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.28 E-value=0.065 Score=63.86 Aligned_cols=74 Identities=4% Similarity=-0.061 Sum_probs=48.9
Q ss_pred EEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 450 LAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 450 ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
+.+++++||..... +.|.+||...+ +...+ + ..+...+.+++|||||++||.+..++.|.+||+.
T Consensus 43 ~SpdG~~l~~~~~~~g~~~l~~~d~~~~---------~~~~l--~-~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (396)
T 3c5m_A 43 FTQDGKKLLFAGDFDGNRNYYLLNLETQ---------QAVQL--T-EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE 110 (396)
T ss_dssp BCTTSCEEEEEECTTSSCEEEEEETTTT---------EEEEC--C-CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred CCCCCCEEEEEEecCCCceEEEEECCCC---------cEEEe--e-cCCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence 44556888877554 36888887431 21121 1 1112223347899999999999999999999999
Q ss_pred CCceeeeec
Q 000170 527 RASAAKVIT 535 (1950)
Q Consensus 527 ~g~~l~tl~ 535 (1950)
+++......
T Consensus 111 ~~~~~~~~~ 119 (396)
T 3c5m_A 111 TLEEQVIYT 119 (396)
T ss_dssp TCCEEEEEE
T ss_pred CCCcEEEEe
Confidence 988655443
No 233
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=93.22 E-value=0.46 Score=62.45 Aligned_cols=107 Identities=8% Similarity=-0.057 Sum_probs=69.6
Q ss_pred EEEcCCEEEEEeCCCc-------------EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC
Q 000170 450 LAVHPSFIAVGMSKGA-------------IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA 516 (1950)
Q Consensus 450 ia~s~~~IAvGts~G~-------------I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~ 516 (1950)
.+++++.|+.++.++. |.+|++..+. .+.. .+. ....+...+.+++|||||++|+.+..
T Consensus 175 wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~-----~~~~-lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~ 246 (695)
T 2bkl_A 175 WTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP-----SKDT-VVH--ERTGDPTTFLQSDLSRDGKYLFVYIL 246 (695)
T ss_dssp ECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG-----GGCE-EEE--CCCCCTTCEEEEEECTTSCCEEEEEE
T ss_pred EecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCc-----hhce-EEE--ecCCCCEEEEEEEECCCCCEEEEEEe
Confidence 4445678999888776 9999985421 1111 222 33445678999999999999999887
Q ss_pred CC----cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC---CceEEEEc
Q 000170 517 DG----HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT---KGLVQLHS 573 (1950)
Q Consensus 517 dG----~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~---~G~V~~h~ 573 (1950)
++ .|.+||..+++. +.+. .|...+....| ++ +. ++++++. .+.++...
T Consensus 247 ~~~~~~~l~~~~~~~~~~-~~l~-~~~~~~~~~~~-~~-----g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 247 RGWSENDVYWKRPGEKDF-RLLV-KGVGAKYEVHA-WK-----DR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp ETTTEEEEEEECTTCSSC-EEEE-ECSSCCEEEEE-ET-----TE-EEEEECTTCTTCEEEEEB
T ss_pred CCCCceEEEEEcCCCCce-EEee-cCCCceEEEEe-cC-----Cc-EEEEECCCCCCCEEEEEe
Confidence 77 788888766654 4454 45556777777 44 23 5555552 34455444
No 234
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=93.21 E-value=0.021 Score=61.88 Aligned_cols=46 Identities=28% Similarity=0.549 Sum_probs=32.8
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|...+..+ +++..|||.||..|+.. -+.. ....||+|...-
T Consensus 55 ~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~-~~~~---~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPICLDMLKNT-----MTTKECLHRFCADCIIT-ALRS---GNKECPTCRKKL 100 (165)
T ss_dssp HBCTTTSSBCSSE-----EEETTTCCEEEHHHHHH-HHHT---TCCBCTTTCCBC
T ss_pred CCCcccChHhhCc-----CEeCCCCChhHHHHHHH-HHHh---CcCCCCCCCCcC
Confidence 4799998877653 44459999999999952 2211 136799998654
No 235
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=93.19 E-value=0.73 Score=51.87 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...|..+++++ .+++..+.+|.|.+||.... ..... .......+++|++++||+..++...++.|.
T Consensus 107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---------~~~~~---~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---------TQTVL---PFTGLNDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC---------SCEEC---CCCSCCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred cCCCcceEECCCCCEEEEECCCCEEEEEECCCc---------eeEee---ccccCCCceeEEEeCCCCEEEEECCCCEEE
Confidence 35688999874 55555567889999975321 11111 112234678999999999888888899999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
+||..++....... .+...+.++++.++ + .+.++....|.|+..
T Consensus 175 ~~~~~~~~~~~~~~-~~~~~p~~i~~d~~-----g-~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 175 KLEAESNNQVVLPF-TDITAPWGIAVDEA-----G-TVYVTEHNTNQVVKL 218 (270)
T ss_dssp EECTTTCCEEECCC-SSCCSEEEEEECTT-----C-CEEEEETTTSCEEEE
T ss_pred EEecCCCceEeecc-cCCCCceEEEECCC-----C-CEEEEECCCCcEEEE
Confidence 99998776543322 33367888888875 3 344444334444443
No 236
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.13 E-value=0.032 Score=52.97 Aligned_cols=50 Identities=28% Similarity=0.543 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccC-CCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESS-SKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~-~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++..|||.||..|+..-...+ ..+....||+|...-
T Consensus 19 ~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 19 EVTCPICLELLKEP------VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTSCTTTCSCCSSC------EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred CCCCcCCChhhCcc------eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 57899999877654 467999999999995211110 011247899998654
No 237
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=93.07 E-value=0.017 Score=57.46 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ +.+..|||.||..|+. +-+.. ....||+|...-
T Consensus 22 ~~~C~IC~~~~~~p-----~~~~~CgH~FC~~Ci~-~~~~~---~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLRDA-----RLCPHCSKLCCFSCIR-RWLTE---QRAQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCSSE-----EECTTTCCEEEHHHHH-HHHHH---TCSBCTTTCCBC
T ss_pred CCCCccCCccccCc-----cccCCCCChhhHHHHH-HHHHH---CcCCCCCCCCcC
Confidence 35799999887653 4448999999999995 22221 125899998654
No 238
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.06 E-value=0.024 Score=53.90 Aligned_cols=50 Identities=30% Similarity=0.575 Sum_probs=34.2
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccC--CCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESS--SKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~--~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+..+ ++..|||.||..|+.. -... ..+....||+|...-
T Consensus 18 ~~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 18 EEVTCPICLELLTQP------LSLDCGHSFCQACLTA-NHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCTTTCSCCSSC------BCCSSSCCBCTTHHHH-HHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCCcccCCc------eeCCCCCHHHHHHHHH-HHHHhhcCCCCCcCCCCCCcc
Confidence 357899999887654 3469999999999952 1111 011247899998654
No 239
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=93.04 E-value=1.6 Score=49.38 Aligned_cols=110 Identities=10% Similarity=-0.039 Sum_probs=71.1
Q ss_pred cCCCcEEEEEcC-CEEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 443 DHGSPQVLAVHP-SFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 443 ~~G~pt~ia~s~-~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
....|.++++++ ..+.+++. +|.|.+||.. + ... .. ........+.+|++++||...++...+|.|
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~-------~~~--~~--~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 80 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-G-------KIT--EY--PLPTPDAKVMCLTISSDGEVWFTENAANKI 80 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-------CEE--EE--ECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-C-------CeE--Ee--cCCcccCceeeEEECCCCCEEEeCCCCCeE
Confidence 346789999885 34555655 7899999863 1 111 11 112234679999999999999998889999
Q ss_pred EEEECCCCceeeeec-cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 521 TVWDVQRASAAKVIT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
..||.. ++. ..+. ..+...+..+++.++ + .+.++....|.|+..
T Consensus 81 ~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~-----g-~l~v~~~~~~~i~~~ 125 (299)
T 2z2n_A 81 GRITKK-GII-KEYTLPNPDSAPYGITEGPN-----G-DIWFTEMNGNRIGRI 125 (299)
T ss_dssp EEECTT-SCE-EEEECSSTTCCEEEEEECTT-----S-CEEEEETTTTEEEEE
T ss_pred EEECCC-CcE-EEEeCCCcCCCceeeEECCC-----C-CEEEEecCCceEEEE
Confidence 999986 443 2222 124457888888865 2 344544444444443
No 240
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=92.80 E-value=0.5 Score=56.06 Aligned_cols=92 Identities=8% Similarity=0.026 Sum_probs=65.3
Q ss_pred CcEEEEEcCCEEEEEe--CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC------
Q 000170 446 SPQVLAVHPSFIAVGM--SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD------ 517 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGt--s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d------ 517 (1950)
.|..+++.+..+.++. .++.|.+||.+.+ .....+. . ......+++++||++++++..+
T Consensus 132 ~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~---~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~ 198 (328)
T 3dsm_A 132 STEQMVQYGKYVYVNCWSYQNRILKIDTETD------KVVDELT---I----GIQPTSLVMDKYNKMWTITDGGYEGSPY 198 (328)
T ss_dssp BCCCEEEETTEEEEEECTTCCEEEEEETTTT------EEEEEEE---C----SSCBCCCEECTTSEEEEEBCCBCTTCSS
T ss_pred CcceEEEECCEEEEEcCCCCCEEEEEECCCC------eEEEEEE---c----CCCccceEEcCCCCEEEEECCCccCCcc
Confidence 5667777777777766 3789999998532 1111111 1 1235678999999988888765
Q ss_pred ----CcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 518 ----GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 518 ----G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+.|.+||..+++..+++.........+++|+++
T Consensus 199 ~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 199 GYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp CBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred ccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence 899999999999887775222347899999986
No 241
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=92.78 E-value=1.8 Score=48.93 Aligned_cols=94 Identities=7% Similarity=-0.056 Sum_probs=63.8
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...|.++++++ .+++....+|.|..||... ....+. .......+.+|++++||...+++..++.|.
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--------~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 123 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG--------IIKEYT----LPNPDSAPYGITEGPNGDIWFTEMNGNRIG 123 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTS--------CEEEEE----CSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCCC--------cEEEEe----CCCcCCCceeeEECCCCCEEEEecCCceEE
Confidence 35689999875 4444444478899998631 111111 122345799999999999999988899999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.||. +++........+...+.++++.++
T Consensus 124 ~~d~-~g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 124 RITD-DGKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred EECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence 9999 666543332234567888888865
No 242
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=92.61 E-value=0.035 Score=53.99 Aligned_cols=48 Identities=31% Similarity=0.644 Sum_probs=34.3
Q ss_pred cCCCcccccccccccCCCCCeEEEec-CCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFN-CGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~-CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
.....|.+|...+..+ ++.. |||.|+..|+.. .... .....||+|...
T Consensus 11 ~~~~~C~IC~~~~~~p------~~~~~CgH~fC~~Ci~~-~~~~--~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA------VVIPCCGNSYCDECIRT-ALLE--SDEHTCPTCHQN 59 (92)
T ss_dssp CTTTEETTTTEECSSC------EECTTTCCEECHHHHHH-HHHH--CTTCCCTTTCCS
T ss_pred CcCCCCCCCChhhcCc------eECCCCCCHHHHHHHHH-HHHh--cCCCcCcCCCCc
Confidence 3467899999887764 4567 999999999952 2111 123689999875
No 243
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=92.53 E-value=0.029 Score=60.00 Aligned_cols=45 Identities=20% Similarity=0.489 Sum_probs=32.5
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|...+..+ ++..|||.||..|+. +.+.. ....||+|...-
T Consensus 79 ~~C~IC~~~~~~p------v~~~CgH~fC~~Ci~-~~~~~---~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 79 FMCVCCQELVYQP------VTTECFHNVCKDCLQ-RSFKA---QVFSCPACRHDL 123 (150)
T ss_dssp TBCTTTSSBCSSE------EECTTSCEEEHHHHH-HHHHT---TCCBCTTTCCBC
T ss_pred CEeecCChhhcCC------EEcCCCCchhHHHHH-HHHHh---CCCcCCCCCccC
Confidence 5799999877654 457999999999995 22221 235799998643
No 244
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=92.26 E-value=1.3 Score=52.68 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=56.0
Q ss_pred cCCCcEEEEEcC--CEEEEEeC-----CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC-CCEEEEe
Q 000170 443 DHGSPQVLAVHP--SFIAVGMS-----KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP-GDLLLAG 514 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts-----~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D-G~~LasG 514 (1950)
....|..+++++ ..+++.+. .+.|++||.+.+ ...+.+.+......+.+.+..|+|+++ |...++.
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd 138 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD 138 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT------EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC------eEEEEEECChhhcccccccceEEEecCCCEEEEEc
Confidence 467899999986 34444443 578999998532 111122211111123456789999986 4555666
Q ss_pred c---CCCcEEEEECCCCceeeeec
Q 000170 515 Y---ADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 515 ~---~dG~I~lWDl~~g~~l~tl~ 535 (1950)
. .++.|.+||+.+++..+.+.
T Consensus 139 ~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 139 PAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp CCSGGGCEEEEEETTTCCEEEECT
T ss_pred CccCCCCeEEEEECCCCCEEEEec
Confidence 5 68999999999998877664
No 245
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=92.19 E-value=3.1 Score=52.02 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhcccchhhHHhhcccCCchhHHHHHHH
Q 000170 993 PEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLV 1062 (1950)
Q Consensus 993 P~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~LydaLIYI~n~~l~DYvTPL~eLl~ 1062 (1950)
|.|--+++..|...|+++.+++++-.-+. -.+..+-..|-+.|+|++-++.|+++ ++-.-|.+.+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~--~a~~~IGd~~~~~g~yeeA~~~Y~~a--~n~~~LA~~L~ 159 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFINGPNN--AHIQQVGDRCYDEKMYDAAKLLYNNV--SNFGRLASTLV 159 (449)
T ss_dssp ---------------CHHHHTTTTTCC------------------CTTTHHHHHHHT--TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHcCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHh--hhHHHHHHHHH
Confidence 56677889999999999999999865333 36778889999999999999999987 44444444443
No 246
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.75 E-value=0.065 Score=54.68 Aligned_cols=42 Identities=26% Similarity=0.573 Sum_probs=31.5
Q ss_pred CCcccccccccccCCCCCeEEEe-cCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF-NCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF-~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|.+|...+..+ ++. .|||.|+..|+.. .. ...||+|...
T Consensus 22 ~~~C~IC~~~~~~p------v~~~~CgH~fC~~Ci~~-~~------~~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNILREP------VCLGGCEHIFCSNCVSD-CI------GTGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCCSSC------BCCCSSSCCBCTTTGGG-GT------TTBCSSSCCB
T ss_pred CCCCCCCChHhhCc------cEeCCCCCHHHHHHHHH-Hh------cCCCcCCCCc
Confidence 46799999887665 344 8999999999952 11 1579999864
No 247
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.30 E-value=0.048 Score=56.21 Aligned_cols=53 Identities=26% Similarity=0.437 Sum_probs=37.5
Q ss_pred cCCCcccccccccccCC-CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.....|.+|...+..+. ....+++..|||.||..|+. +-+. ....||+|...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~-~~~~----~~~~CP~Cr~~~ 58 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR-DSLK----NANTCPTCRKKI 58 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHH-HHHT----TCSBCTTTCCBC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHH-HHHH----hCCCCCCCCCcC
Confidence 44678999998876541 12346889999999999995 2222 235899998644
No 248
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.06 E-value=3.7 Score=46.36 Aligned_cols=110 Identities=8% Similarity=-0.073 Sum_probs=70.3
Q ss_pred CCCcEEEEEcC-CEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP-SFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...|.++++++ ..|.+++ .+|.|.+||.. + ....+ ........+.+|+++++|...++...++.|.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~-------~~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-G-------RIKEF----EVPTPDAKVMCLIVSSLGDIWFTENGANKIG 86 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-------CEEEE----ECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-C-------ceEEE----ECCCCCCcceeEEECCCCCEEEEecCCCeEE
Confidence 45788999875 3344444 67899999863 1 11111 1122346799999999999988888889999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.||.. ++........+...+.++++.++ + .+.++....|.|+..
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~-----g-~l~v~~~~~~~i~~~ 130 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGLN-----G-DIWFTQLNGDRIGKL 130 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECST-----T-CEEEEETTTTEEEEE
T ss_pred EECCC-CCeEEecCCCCCCCCccceECCC-----C-CEEEEccCCCeEEEE
Confidence 99988 66532221123467888888764 2 244444434444443
No 249
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=90.94 E-value=1.8 Score=51.18 Aligned_cols=89 Identities=7% Similarity=-0.021 Sum_probs=60.8
Q ss_pred CcEEEEEcCCEEEEEeC-CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 446 SPQVLAVHPSFIAVGMS-KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts-~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
.|..+++.+..+.+++. +|.|.+||.+.+ +.+. ... .......|+|++||+..++...++.|.+||
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~---------~~~~-~i~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD 111 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTF---------KEVG-RIT---GFTSPRYIHFLSDEKAYVTQIWDYRIFIIN 111 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTC---------CEEE-EEE---CCSSEEEEEEEETTEEEEEEBSCSEEEEEE
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECccc---------EEEE-EcC---CCCCCcEEEEeCCCeEEEEECCCCeEEEEE
Confidence 37888888876666555 689999998542 1111 001 235689999999996555554799999999
Q ss_pred CCCCceeeeeccCcC----CCeEEEEE
Q 000170 525 VQRASAAKVITGEHT----SPVVHTLF 547 (1950)
Q Consensus 525 l~~g~~l~tl~~~H~----~~I~~v~F 547 (1950)
+.+++...++..+.. ....++++
T Consensus 112 ~~t~~~~~~i~~g~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 112 PKTYEITGYIECPDMDMESGSTEQMVQ 138 (328)
T ss_dssp TTTTEEEEEEECTTCCTTTCBCCCEEE
T ss_pred CCCCeEEEEEEcCCccccCCCcceEEE
Confidence 999998877753331 13456666
No 250
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=90.91 E-value=1.8 Score=51.09 Aligned_cols=111 Identities=13% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCcEEEEEcC--CEEEEE-eCCCcEEEEeCC--CCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 445 GSPQVLAVHP--SFIAVG-MSKGAIVVVPGK--YSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvG-ts~G~I~vfd~k--~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
+.+..+++++ +++.++ +.++.|.+||.. .+. ......... ......+.+..+++++||.+.++...+|.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl----~~~~~~~~~--~~~~~~~~p~gi~~d~~G~lwva~~~~~~ 252 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGL----PTGKAEVFI--DSTGIKGGMDGSVCDAEGHIWNARWGEGA 252 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCC----BSSCCEEEE--ECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCC----cccCceEEE--ECCCCCCCCCeeEECCCCCEEEEEeCCCE
Confidence 4466777764 566554 557899999973 110 000011111 11223456789999999999888888899
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCc
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
|..||. +|+.+..+. .+...|++++|.+.+ ...+.+++...|
T Consensus 253 v~~~d~-~g~~~~~i~-~~~~~~~~~af~g~d----~~~L~vt~~~~~ 294 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYE-VPGKQTTCPAFIGPD----ASRLLVTSAREH 294 (326)
T ss_dssp EEEECT-TCCEEEEEE-CSCSBEEEEEEESTT----SCEEEEEEBCTT
T ss_pred EEEECC-CCCEEEEEE-CCCCCcEEEEEecCC----CCEEEEEecCCC
Confidence 999998 677777775 555679999998421 345666665543
No 251
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=90.90 E-value=1.3 Score=58.63 Aligned_cols=96 Identities=7% Similarity=-0.010 Sum_probs=61.0
Q ss_pred CEEEEEeCCCc--------------EEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC--
Q 000170 455 SFIAVGMSKGA--------------IVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG-- 518 (1950)
Q Consensus 455 ~~IAvGts~G~--------------I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG-- 518 (1950)
+.|+.++.++. |.+|++..+. .+. .++. ....+...+.+++|||||++|+.+..++
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-----~~~-~lv~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 291 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ-----SAD-QPVF--ATPELPKRGHGASVSSDGRWVVITSSEGTD 291 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCG-----GGC-EEEE--CCTTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCc-----hhC-EEEe--ccCCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence 67777776554 8889875421 111 1222 2233445699999999999999888655
Q ss_pred ---cEEEEECCCC--ceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 519 ---HVTVWDVQRA--SAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 519 ---~I~lWDl~~g--~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
.|.+||+.++ ++.+.+. .+...+....+ ++ +..+++.++.
T Consensus 292 ~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~~~~~-~d-----g~~l~~~s~~ 336 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIGPVTALI-PDLKAQWDFVD-GV-----GDQLWFVSGD 336 (741)
T ss_dssp SCCEEEEEEEETTEECCCEEEE-CSSSSCEEEEE-EE-----TTEEEEEECT
T ss_pred CcceEEEEECCCCCCcccEEec-CCCCceEEEEe-cc-----CCEEEEEECC
Confidence 8999999987 4255665 44455555544 54 3455555554
No 252
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=90.71 E-value=1.3 Score=54.69 Aligned_cols=112 Identities=8% Similarity=-0.028 Sum_probs=73.3
Q ss_pred cCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC--
Q 000170 443 DHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG-- 518 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG-- 518 (1950)
.+..|..+++++ .++++...++.|++||...+ ... .+. .. . .... ++|+++|.+|.++..+|
T Consensus 129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-------~~~--~~~-~~--~-~~~~-ia~~~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-------KVT--TVH-PG--F-KGGK-PAVTKDKQRVYSIGWEGTH 194 (409)
T ss_dssp CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTT-------EEE--EEE-ET--C-CBCB-CEECTTSSEEEEEBSSTTC
T ss_pred ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCC-------EEE--Eee-cc--C-CCCc-eeEecCCCcEEEEecCCCc
Confidence 467899999975 55666667789999997431 111 111 11 1 1223 99999999999888876
Q ss_pred cEEEEECCCCceeeee---ccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 519 HVTVWDVQRASAAKVI---TGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl---~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.|.+||...+...+.+ ...+...+.+++|.+++ + .+.+ +|..|.|+....
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~----g-~lyv-~d~~~~I~~~d~ 247 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETE----E-WLYF-VDSNKNFGRFNV 247 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTS----S-EEEE-ECTTCEEEEEET
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCC----C-eEEE-EECCCcEEEEEC
Confidence 7999998877654444 11244677889998841 3 3444 677776666553
No 253
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=90.61 E-value=4.8 Score=45.49 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=63.4
Q ss_pred CCCcEEEEEcC-CEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP-SFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...|.++++++ ..+.+++ .+|.|..||.. + ....+ ........+.+|++.++|...+++..++.|.
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g-------~~~~~----~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 128 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G-------GFTEY----PLPQPDSGPYGITEGLNGDIWFTQLNGDRIG 128 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-S-------CEEEE----ECSSTTCCEEEEEECSTTCEEEEETTTTEEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-C-------CeEEe----cCCCCCCCCccceECCCCCEEEEccCCCeEE
Confidence 46789999875 3344454 47889999863 1 11111 1122336799999999999999998899999
Q ss_pred EEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 522 VWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 522 lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
.||.. ++........+...+..+++.++
T Consensus 129 ~~~~~-g~~~~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 129 KLTAD-GTIYEYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred EECCC-CCEEEccCCCCCCCceeEEECCC
Confidence 99988 66543222234456788888765
No 254
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=89.92 E-value=0.45 Score=63.03 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=63.1
Q ss_pred cEEEEEc--CCEEEEEeCC-----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 447 PQVLAVH--PSFIAVGMSK-----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 447 pt~ia~s--~~~IAvGts~-----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
...++++ +++||.+.++ ..|++||+..+ +.+.. .. +...++.++|||| ++|+.+..++.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg---------~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~ 230 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG---------KPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEP 230 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC---------CEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---------CCCCc--cC--CCceeccEEEECC-CEEEEEEecCc
Confidence 3445555 5899988765 35999998542 11111 00 1122467899999 99998887665
Q ss_pred --------------EEEEECCCCcee--eeec-cCcCCCeEEEEEecCCCccCCceEEEEec
Q 000170 520 --------------VTVWDVQRASAA--KVIT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 520 --------------I~lWDl~~g~~l--~tl~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
|.+|++.++... .... ..|...+.++.|++| +..+++++.
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-----G~~l~~~~~ 287 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD-----GRWVVITSS 287 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-----SCEEEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC-----CCEEEEEEE
Confidence 999999887631 2222 134446899999998 345555553
No 255
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.76 E-value=0.15 Score=48.02 Aligned_cols=52 Identities=27% Similarity=0.519 Sum_probs=34.9
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
|.-....|.+|...+... ..--.|+|.||..|+.. -+.. . ....||+|...=
T Consensus 11 y~~~i~~C~IC~~~i~~g-----~~C~~C~h~fH~~Ci~k-Wl~~-~-~~~~CP~Cr~~w 62 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQG-----QSCETCGIRMHLPCVAK-YFQS-N-AEPRCPHCNDYW 62 (74)
T ss_dssp CSSSSCBCSSSCCBCSSS-----EECSSSCCEECHHHHHH-HSTT-C-SSCCCTTTCSCC
T ss_pred ccCCCCcCcchhhHcccC-----CccCCCCchhhHHHHHH-HHHh-c-CCCCCCCCcCcC
Confidence 334458999999888643 23339999999999952 1111 0 126899998643
No 256
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=89.67 E-value=0.24 Score=60.15 Aligned_cols=71 Identities=13% Similarity=0.171 Sum_probs=43.9
Q ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCce
Q 000170 451 AVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASA 530 (1950)
Q Consensus 451 a~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~ 530 (1950)
++.+..|++|+.+|.|..||.+.+ + ..|.... ++|.+..+..+|+.+++|+.||.|+.||..+|+.
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG---------~-~~W~~~~----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTG---------S-IKWTLKE----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTC---------C-EEEEEEC----CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCC---------C-EEEEecC----CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 456789999999999999998542 2 2232222 4555666678899999999999999999999988
Q ss_pred eeeec
Q 000170 531 AKVIT 535 (1950)
Q Consensus 531 l~tl~ 535 (1950)
+..+.
T Consensus 72 ~w~~~ 76 (369)
T 2hz6_A 72 LTKLP 76 (369)
T ss_dssp SEECS
T ss_pred eeeee
Confidence 65553
No 257
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=89.55 E-value=3.2 Score=47.59 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=59.8
Q ss_pred CCCcEEEEEcCC--EEEEEeCCCcEEEEeCCCCCCccCcccceeeee-cccC-CCCCCCeEEEEEcCCCCEEEEecCC--
Q 000170 444 HGSPQVLAVHPS--FIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMML-GLLG-DRSPAPVTAMCFNQPGDLLLAGYAD-- 517 (1950)
Q Consensus 444 ~G~pt~ia~s~~--~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l-~~~~-~~h~~~VtsLafS~DG~~LasG~~d-- 517 (1950)
.+.|.+++++++ .|.+++..+.|.+||.. + +...+ .... ......+.+|++++||...++...+
T Consensus 70 ~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g---------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 139 (314)
T 1pjx_A 70 GGIPAGCQCDRDANQLFVADMRLGLLVVQTD-G---------TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEV 139 (314)
T ss_dssp ECCEEEEEECSSSSEEEEEETTTEEEEEETT-S---------CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBC
T ss_pred CCCCceEEEecCCCcEEEEECCCCEEEEeCC-C---------CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccc
Confidence 366889998764 67777776689999873 2 11111 1111 1123468999999999988887765
Q ss_pred -------------CcEEEEECCCCceeeeeccCcCCCeEEEEEe
Q 000170 518 -------------GHVTVWDVQRASAAKVITGEHTSPVVHTLFL 548 (1950)
Q Consensus 518 -------------G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~ 548 (1950)
+.|..||.. ++..... .+......++|.
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~~~~~~~~i~~~ 180 (314)
T 1pjx_A 140 APADYTRSMQEKFGSIYCFTTD-GQMIQVD--TAFQFPNGIAVR 180 (314)
T ss_dssp TTSCCCBTTSSSCEEEEEECTT-SCEEEEE--EEESSEEEEEEE
T ss_pred ccccccccccCCCCeEEEECCC-CCEEEec--cCCCCcceEEEe
Confidence 678888876 6654332 233456788888
No 258
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=89.42 E-value=0.075 Score=50.57 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCCCeEEEec--CCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFN--CGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~--CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
...|.+|-.++.... .+++. |||.|+..|+. .... .....||+|...-.
T Consensus 11 ~~~CpICle~~~~~d----~~~~p~~CGH~fC~~Cl~-~~~~---~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 11 PVECPLCMEPLEIDD----INFFPCTCGYQICRFCWH-RIRT---DENGLCPACRKPYP 61 (78)
T ss_dssp CCBCTTTCCBCCTTT----TTCCSSTTSCCCCHHHHH-HHTT---SSCSBCTTTCCBCS
T ss_pred CCcCCccCccCcccc----ccccccCCCCCcCHHHHH-HHHh---cCCCCCCCCCCccC
Confidence 468999999875432 23444 99999999984 2211 12478999987553
No 259
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=88.80 E-value=0.093 Score=53.31 Aligned_cols=46 Identities=28% Similarity=0.406 Sum_probs=32.7
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++..|||.||..|+. +.+.. ....||+|...-
T Consensus 23 ~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~-~~~~~---~~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHILADP------VETSCKHLFCRICIL-RCLKV---MGSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBCSSE------EECTTSCEEEHHHHH-HHHHH---TCSBCTTTCCBC
T ss_pred CCCCCCCCcHhcCc------EEcCCCCcccHHHHH-HHHhH---CcCcCCCCCCCC
Confidence 35799999877654 447999999999985 22211 135799998653
No 260
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=88.66 E-value=4.2 Score=47.96 Aligned_cols=111 Identities=11% Similarity=0.002 Sum_probs=63.1
Q ss_pred CCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC------C
Q 000170 445 GSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA------D 517 (1950)
Q Consensus 445 G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~------d 517 (1950)
+.|.+++.++ ..+.+++.+| |.+||.+.+ ....+. ..........+..+++++||++.++... .
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~g-l~~~d~~~g-------~~~~~~-~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDDG-LFLRDTATG-------VLTLHA-ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA 160 (326)
T ss_dssp SCEEEEEEEETTEEEEEETTE-EEEEETTTC-------CEEEEE-CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred CcceEEEEeCCCeEEEEECCC-EEEEECCCC-------cEEEEe-eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCc
Confidence 4688888764 4456667665 889997431 111111 1111112346899999999997776542 2
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
|.|..+| +|+... +. .+......++|++| +..+.++....+.|+...
T Consensus 161 ~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~d-----g~~lyv~~~~~~~I~~~d 207 (326)
T 2ghs_A 161 GSIYHVA--KGKVTK-LF-ADISIPNSICFSPD-----GTTGYFVDTKVNRLMRVP 207 (326)
T ss_dssp EEEEEEE--TTEEEE-EE-EEESSEEEEEECTT-----SCEEEEEETTTCEEEEEE
T ss_pred eEEEEEe--CCcEEE-ee-CCCcccCCeEEcCC-----CCEEEEEECCCCEEEEEE
Confidence 4555566 565433 22 23345678999987 344555544444454443
No 261
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=88.60 E-value=0.14 Score=62.56 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=32.5
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...... .++.+|||.||..|+. +-..+ ....||+|...-
T Consensus 332 ~~~C~ICle~~~~------pv~lpCGH~FC~~Ci~-~wl~~---~~~~CP~CR~~i 377 (389)
T 2y1n_A 332 FQLCKICAENDKD------VKIEPCGHLMCTSCLT-SWQES---EGQGCPFCRCEI 377 (389)
T ss_dssp SSBCTTTSSSBCC------EEEETTCCEECHHHHH-HHHHH---TCSBCTTTCCBC
T ss_pred CCCCCccCcCCCC------eEEeCCCChhhHHHHH-HHHhc---CCCCCCCCCCcc
Confidence 3689999765533 5788999999999984 21111 236899998643
No 262
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=88.47 E-value=1.5 Score=53.84 Aligned_cols=105 Identities=12% Similarity=0.017 Sum_probs=68.6
Q ss_pred EcCCEEEEEeC-----CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec----------C
Q 000170 452 VHPSFIAVGMS-----KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY----------A 516 (1950)
Q Consensus 452 ~s~~~IAvGts-----~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~----------~ 516 (1950)
+++..+.|... +|.|.++|...+ +.+-.-..+ .+| . |+|||||++|.++. .
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~---------~v~~~I~vG---~~P-~-va~spDG~~lyVan~~~~r~~~G~~ 107 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAG---------RVIGMIDGG---FLP-N-PVVADDGSFIAHASTVFSRIARGER 107 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTT---------EEEEEEEEC---SSC-E-EEECTTSSCEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCC---------eEEEEEECC---CCC-c-EEECCCCCEEEEEcccccccccCCC
Confidence 45566666655 579999998531 211100122 334 3 99999999887765 4
Q ss_pred CCcEEEEECCCCceeeeeccCc------CCCeEEEEEecCCCccCCceEEEEe-cCCceEEEEccc
Q 000170 517 DGHVTVWDVQRASAAKVITGEH------TSPVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHSLS 575 (1950)
Q Consensus 517 dG~I~lWDl~~g~~l~tl~~~H------~~~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ft 575 (1950)
++.|.+||..+++.+.++.-+. ...-..++|++| +..+.++. ...+.|......
T Consensus 108 ~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD-----Gk~lyVan~~~~~~VsVID~~ 168 (386)
T 3sjl_D 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD-----GKTLLFYQFSPAPAVGVVDLE 168 (386)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT-----SSEEEEEECSSSCEEEEEETT
T ss_pred CCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC-----CCEEEEEEcCCCCeEEEEECC
Confidence 6789999999999988875321 124557899998 44566664 335666666643
No 263
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=88.36 E-value=0.35 Score=53.12 Aligned_cols=54 Identities=11% Similarity=-0.109 Sum_probs=38.4
Q ss_pred hcCccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1747 ASHGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1747 ~~rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...+-.|....|.+|+..+..+ |+..|||+|-..|+.. -...+ ...||+|...-
T Consensus 98 ~~~~~ip~~f~CPI~~elm~DP------V~~~~Ghtfer~~I~~-~l~~~---~~tcP~t~~~l 151 (179)
T 2f42_A 98 RKKREIPDYLCGKISFELMREP------CITPSGITYDRKDIEE-HLQRV---GHFDPVTRSPL 151 (179)
T ss_dssp GGCCCCCGGGBCTTTCSBCSSE------EECTTSCEEEHHHHHH-HHHHT---CSBCTTTCCBC
T ss_pred ccccCCcHhhcccCccccCCCC------eECCCCCEECHHHHHH-HHHhC---CCCCCCCcCCC
Confidence 4455567889999999888876 4559999999999852 22111 12699998643
No 264
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.36 E-value=0.14 Score=59.45 Aligned_cols=52 Identities=12% Similarity=-0.109 Sum_probs=37.2
Q ss_pred CccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1749 HGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1749 rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.+-.|....|.+|...+..+ |+..|||+|...|+.. -... ....||+|...-
T Consensus 202 ~~~~~~~~~c~i~~~~~~dP------v~~~~gh~f~~~~i~~-~~~~---~~~~cP~~~~~~ 253 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREP------CITPSGITYDRKDIEE-HLQR---VGHFNPVTRSPL 253 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSE------EECSSCCEEETTHHHH-HHHH---TCSSCTTTCCCC
T ss_pred CCCCCcccCCcCcCCHhcCC------eECCCCCEECHHHHHH-HHHH---CCCCCcCCCCCC
Confidence 34556788999999888776 5678999999999852 2211 123499998643
No 265
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=87.97 E-value=0.26 Score=46.07 Aligned_cols=40 Identities=35% Similarity=0.656 Sum_probs=30.6
Q ss_pred CcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|...+.. .+...|||. |+..|+.. ...||+|...-
T Consensus 25 ~~C~iC~~~~~~------~~~~pCgH~~~C~~C~~~---------~~~CP~Cr~~i 65 (74)
T 4ic3_A 25 KLCKICMDRNIA------IVFVPCGHLVTCKQCAEA---------VDKCPMCYTVI 65 (74)
T ss_dssp TBCTTTSSSBCC------EEEETTCCBCCCHHHHTT---------CSBCTTTCCBC
T ss_pred CCCCCCCCCCCC------EEEcCCCChhHHHHhhhc---------CccCCCcCcCc
Confidence 479999865443 567799999 99999841 26899998643
No 266
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=87.77 E-value=0.42 Score=62.94 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=45.1
Q ss_pred CCCCeEEEEEcCCCCEEE-----EecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 495 SPAPVTAMCFNQPGDLLL-----AGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~La-----sG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
+...|..++|||||++|| .|+...+|++||+.+|+.+... .+.....+++|+ | +..++.++++
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~~k~~~~~Ws-D-----g~~l~y~~~~ 194 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP--LKDVKFSGISWL-G-----NEGFFYSSYD 194 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE--EEEEESCCCEEE-T-----TTEEEEEESS
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc--cCCceeccEEEe-C-----CCEEEEEEec
Confidence 456899999999999999 5666678999999999865431 111223577899 7 3456666544
No 267
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=87.65 E-value=1.2 Score=54.77 Aligned_cols=79 Identities=18% Similarity=0.073 Sum_probs=52.5
Q ss_pred EEEcC--CEEEEEe----------CCCcEEEEeCCCCCCccCcccceeeeecccCCC--CCCCeEEEEEcCCCCEEEEec
Q 000170 450 LAVHP--SFIAVGM----------SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDR--SPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 450 ia~s~--~~IAvGt----------s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~--h~~~VtsLafS~DG~~LasG~ 515 (1950)
+++++ +++.++. .++.|.+||.+.. .....+... .+.. ....-..++|||||++|.++.
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~------~v~~~I~v~-~g~r~~~g~~P~~~a~spDGk~lyVan 155 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL------LPTADIELP-DAPRFLVGTYPWMTSLTPDGKTLLFYQ 155 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------CEEEEEEET-TCCCCCBSCCGGGEEECTTSSEEEEEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC------eEEEEEECC-CccccccCCCCceEEEcCCCCEEEEEE
Confidence 77775 6666654 3578999998542 111122211 1000 012356799999999988885
Q ss_pred C--CCcEEEEECCCCceeeeec
Q 000170 516 A--DGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 516 ~--dG~I~lWDl~~g~~l~tl~ 535 (1950)
. ++.|.++|+.+++.+.++.
T Consensus 156 ~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 156 FSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp CSSSCEEEEEETTTTEEEEEEE
T ss_pred cCCCCeEEEEECCCCcEEEEEE
Confidence 3 6899999999999998885
No 268
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=87.64 E-value=0.11 Score=53.07 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=32.6
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ ++..|||.||..|+.. -... ....||+|...-
T Consensus 18 ~~~C~IC~~~~~~p------~~~~CgH~fC~~Ci~~-~~~~---~~~~CP~Cr~~~ 63 (118)
T 3hct_A 18 KYECPICLMALREA------VQTPCGHRFCKACIIK-SIRD---AGHKCPVDNEIL 63 (118)
T ss_dssp GGBCTTTCSBCSSE------EECTTSCEEEHHHHHH-HHHH---HCSBCTTTCCBC
T ss_pred CCCCCcCChhhcCe------EECCcCChhhHHHHHH-HHhh---CCCCCCCCCCCc
Confidence 46899999877654 4569999999999952 1111 123899997643
No 269
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.08 E-value=0.21 Score=62.20 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=105.9
Q ss_pred CCChHHHHHHHHhhhHHHHHHHHHHHcCCHHHHHHHHHhccCC--cchhHHHHHHHHhhcChhHHHHHHHHHHHHHHHHH
Q 000170 1299 DWNASEVLHLCENAHFYQVCGLIHTIRYNYLAALDSYMKDVDE--PICAFSFIHDTLLQLTDNEYTAFHSAVISRIPELI 1376 (1950)
Q Consensus 1299 d~d~d~lL~L~e~A~FyrVL~~LY~~~~qY~~aL~~yL~D~d~--~~~VF~yI~~~L~~ls~~q~~~l~~aI~~~i~~Lv 1376 (1950)
-+|...++..||+++.|..+.+||.+-.+|+.|+.+.++-+.. ..+.|.-|-.. ++.. +.+.
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K---VaN~--EiyY----------- 354 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK---VANV--ELYY----------- 354 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG---CSCS--HHHH-----------
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH---cchH--HHHH-----------
Confidence 4566789999999999999999999999999999999986422 12233333211 1111 1111
Q ss_pred hcCHHHHHHHHHhhcccchHHHHHhhc---cCChhHHHhhHHHHHhhccccccccccccCCcccccccccccccccchhh
Q 000170 1377 CLSREATFFLVIDQFNDEASHILSELR---SHPKSLFLYLKTVVEVHLHGTLNLSYLRKDDTLDVANCKWVKYQSKGLGA 1453 (1950)
Q Consensus 1377 ~id~~~Ta~Ll~e~f~~~~~~IL~~L~---~~p~lqf~YL~~Lle~~~~g~ld~s~l~~~~~~d~~~g~~~~~~~~~l~~ 1453 (1950)
++..+-++..|..+.+++..|. ++++. ..+++ ...+.+.++.
T Consensus 355 -----KAi~FYL~e~P~lL~DLL~vL~prlDh~Rv-V~~~~-----------------------------k~~~LpLIkp 399 (624)
T 3lvg_A 355 -----RAIQFYLEFKPLLLNDLLMVLSPRLDHTRA-VNYFS-----------------------------KVKQLPLVKP 399 (624)
T ss_dssp -----HHHHHHTTSCCTTSHHHHHHHCTTCCSTTT-HHHHH-----------------------------TTTCGGGGTG
T ss_pred -----HHHHHHHHhChHHHHHHHHhccccCChHHH-HHHHH-----------------------------hcCCchhhHH
Confidence 2333334444544444444442 11110 00000 0012244555
Q ss_pred HHHHhhcCcccccCCCccccHHHHHHHHHHHhhcC-chHHHHHHhhCCCCCHHHHHHHHHhcCCc---hHHHHHHHHhCC
Q 000170 1454 YIERISDLPKFLSSNAVHVTDDMIELYLELLCRYE-RDSVLKFLETFDSYRVEYCLRLCQEYGIT---DAAAFLLERVGD 1529 (1950)
Q Consensus 1454 Yle~L~~~p~~~~~~~~~~~~~l~elYIeLLCqyd-P~~Vl~fLqt~~~Y~Le~aL~iCee~~i~---DA~ayLLeR~Gd 1529 (1950)
|+..+ ...+...+.+.+.++|| +-+ -+.+-.=++++++|+--..-+-+++|.+. .-+||||.|.++
T Consensus 400 YL~~V------q~~N~~aVNeAln~L~I----EEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~r 469 (624)
T 3lvg_A 400 YLRSV------QNHNNKSVNESLNNLFI----TEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNR 469 (624)
T ss_dssp GGTSC------CCSCCHHHHHHHHHHHH----HTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCH
T ss_pred HHHHH------HHhhHHHHHHHHHHHHh----hhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhccc
Confidence 65432 11223345666666666 544 45566777788888877777777888765 469999999999
Q ss_pred HHHHHHH
Q 000170 1530 VGSALLL 1536 (1950)
Q Consensus 1530 ~~eAL~l 1536 (1950)
+.+|+.+
T Consensus 470 w~qsi~l 476 (624)
T 3lvg_A 470 WKQSVEL 476 (624)
T ss_dssp HHHHSSC
T ss_pred HHHHHHH
Confidence 9999864
No 270
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=86.83 E-value=0.12 Score=53.06 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=33.8
Q ss_pred CCCcccccccccccCC-CCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|...+.... .....+...|||.||..|+.. -+. ....||+|...-
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~-~~~----~~~~CP~Cr~~~ 123 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD-SLK----NANTCPTCRKKI 123 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH-HHH----HCSBCTTTCCBC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHH-HHH----cCCCCCCCCCcC
Confidence 3456777776654321 122358889999999999952 221 236899998754
No 271
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=86.77 E-value=1.7 Score=54.04 Aligned_cols=104 Identities=12% Similarity=-0.026 Sum_probs=68.0
Q ss_pred cCCEEEEEeCC-----CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec----------CC
Q 000170 453 HPSFIAVGMSK-----GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY----------AD 517 (1950)
Q Consensus 453 s~~~IAvGts~-----G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~----------~d 517 (1950)
++..+.|.... |.|.++|...+ .-...+- .+ ..| .|+|||||++|.++. .+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~------~vv~~I~---vG---~~P--gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTG------RILGMTD---GG---FLP--HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTT------EEEEEEE---EC---SSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCC------EEEEEEE---CC---CCC--ceEECCCCCEEEEEeccccccccCCCC
Confidence 34555555443 69999998531 1111111 22 245 799999999988886 47
Q ss_pred CcEEEEECCCCceeeeeccC------cCCCeEEEEEecCCCccCCceEEEEe-cCCceEEEEccc
Q 000170 518 GHVTVWDVQRASAAKVITGE------HTSPVVHTLFLGQDSQVTRQFKAVTG-DTKGLVQLHSLS 575 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~------H~~~I~~v~F~~d~~~~~~~~~~vss-D~~G~V~~h~ft 575 (1950)
+.|.++|..+++.++++.-+ +...-..++|++| +..+.++. ...+.|......
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD-----Gk~lyV~n~~~~~~VsVID~~ 208 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD-----NKNLLFYQFSPAPAVGVVDLE 208 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT-----SSEEEEEECSSSCEEEEEETT
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC-----CCEEEEEecCCCCeEEEEECC
Confidence 89999999999998887532 1123457889988 45566665 335667666654
No 272
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=86.30 E-value=4.4 Score=49.25 Aligned_cols=68 Identities=10% Similarity=-0.148 Sum_probs=47.8
Q ss_pred EEEEcCCCCEEEEec----------CCCcEEEEECCCCceeeeeccC---c---CCCeEEEEEecCCCccCCceEEEEec
Q 000170 501 AMCFNQPGDLLLAGY----------ADGHVTVWDVQRASAAKVITGE---H---TSPVVHTLFLGQDSQVTRQFKAVTGD 564 (1950)
Q Consensus 501 sLafS~DG~~LasG~----------~dG~I~lWDl~~g~~l~tl~~~---H---~~~I~~v~F~~d~~~~~~~~~~vssD 564 (1950)
.++|||||++|.++. .++.|.+||+.+++.+.++.-+ + ...-..++|++| +..+.++.-
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD-----G~~l~v~n~ 144 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN-----NADLLFFQF 144 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC-----CCEEEEEec
Confidence 899999999999885 4678999999999888777432 0 112347899998 455666553
Q ss_pred -CCceEEEEc
Q 000170 565 -TKGLVQLHS 573 (1950)
Q Consensus 565 -~~G~V~~h~ 573 (1950)
..+.|....
T Consensus 145 ~~~~~v~viD 154 (373)
T 2mad_H 145 AAGPAVGLVV 154 (373)
T ss_pred CCCCeEEEEE
Confidence 244455444
No 273
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=86.26 E-value=5.8 Score=52.08 Aligned_cols=88 Identities=8% Similarity=-0.011 Sum_probs=56.9
Q ss_pred cCCEEEEEeCCCc-------------EEEEeCCCCCCccCcccceeeeecccCCC-CCCCeEEEEEcCCCCEEEEecC--
Q 000170 453 HPSFIAVGMSKGA-------------IVVVPGKYSAHHRDSMDSKMMMLGLLGDR-SPAPVTAMCFNQPGDLLLAGYA-- 516 (1950)
Q Consensus 453 s~~~IAvGts~G~-------------I~vfd~k~~~~~~d~~~~k~~~l~~~~~~-h~~~VtsLafS~DG~~LasG~~-- 516 (1950)
+++.|+.++.++. |.+|++..+. .+..+ +. .... +...+.+++||+||++|+....
T Consensus 184 Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-----~~~~~-v~--~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 255 (693)
T 3iuj_A 184 GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQ-----EDDRL-VF--GAIPAQHHRYVGATVTEDDRFLLISAANS 255 (693)
T ss_dssp TTTEEEEEESSCCC-------CCCCEEEEEETTSCG-----GGCEE-EE--SCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred CCCEEEEEEecCcccccccccCCCcEEEEEECCCCc-----ccceE-EE--ecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence 7788998888754 8899885421 11122 22 2333 4456889999999999965433
Q ss_pred --CCcEEEEECCCCc-eeeeeccCcCCCeEEEEEecC
Q 000170 517 --DGHVTVWDVQRAS-AAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 517 --dG~I~lWDl~~g~-~l~tl~~~H~~~I~~v~F~~d 550 (1950)
++.|.+||+.++. ..+.+. .+...+... |.++
T Consensus 256 ~~~~~i~~~d~~~~~~~~~~l~-~~~~~~~~~-~~~~ 290 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAPLLTVQ-GDLDADVSL-VDNK 290 (693)
T ss_dssp SSCCEEEEEETTSTTCCCEEEE-CSSSSCEEE-EEEE
T ss_pred CCCcEEEEEECCCCCCceEEEe-CCCCceEEE-Eecc
Confidence 3589999998874 445554 565666655 4444
No 274
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=85.60 E-value=6.2 Score=45.60 Aligned_cols=113 Identities=6% Similarity=-0.007 Sum_probs=63.6
Q ss_pred CCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC-----
Q 000170 444 HGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD----- 517 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d----- 517 (1950)
.+.|.++++++ ..+.+++ ++.|.+||.+.+ ..+.+. ..........+..+++++||.+.++....
T Consensus 53 ~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g-------~~~~~~-~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~ 123 (297)
T 3g4e_A 53 DAPVSSVALRQSGGYVATI-GTKFCALNWKEQ-------SAVVLA-TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPA 123 (297)
T ss_dssp SSCEEEEEEBTTSSEEEEE-TTEEEEEETTTT-------EEEEEE-ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTT
T ss_pred CCceEEEEECCCCCEEEEE-CCeEEEEECCCC-------cEEEEE-ecCCCCCCCCCCCEEECCCCCEEEecCCcccccc
Confidence 46789999875 2266666 567899997431 111111 11111123458999999999977765332
Q ss_pred ----CcEEEEECCC-CceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 518 ----GHVTVWDVQR-ASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 518 ----G~I~lWDl~~-g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
+...||.+.. ++..... .+......++|+++ +..+.++....+.|+..
T Consensus 124 ~~~~~~~~l~~~d~~g~~~~~~--~~~~~pngi~~spd-----g~~lyv~~~~~~~i~~~ 176 (297)
T 3g4e_A 124 VLERHQGALYSLFPDHHVKKYF--DQVDISNGLDWSLD-----HKIFYYIDSLSYSVDAF 176 (297)
T ss_dssp BCCTTCEEEEEECTTSCEEEEE--EEESBEEEEEECTT-----SCEEEEEEGGGTEEEEE
T ss_pred cccCCCcEEEEEECCCCEEEEe--eccccccceEEcCC-----CCEEEEecCCCCcEEEE
Confidence 3345565543 4433322 23345678999987 34455554444545444
No 275
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.21 E-value=0.18 Score=47.25 Aligned_cols=40 Identities=35% Similarity=0.664 Sum_probs=30.0
Q ss_pred CcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|...+.. .++.+|||. |+..|+. . ...||+|...-
T Consensus 26 ~~C~IC~~~~~~------~~~~pCgH~~~C~~C~~--~-------~~~CP~Cr~~i 66 (75)
T 2ecg_A 26 KLCKICMDRNIA------IVFVPCGHLVTCKQCAE--A-------VDKCPMCYTVI 66 (75)
T ss_dssp HSCSSSCSSCCC------BCCSSSCCCCBCHHHHH--H-------CSBCTTTCCBC
T ss_pred CCCCcCCCCCCC------EEEecCCCHHHHHHHhh--C-------CCCCccCCcee
Confidence 369999876544 355699999 9999983 1 36899998643
No 276
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=84.78 E-value=5.2 Score=47.62 Aligned_cols=79 Identities=11% Similarity=0.010 Sum_probs=53.9
Q ss_pred CCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 444 HGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 444 ~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.+.+.++++.+..|.+++.+|.|..||.+.+ + ..+..... ....+++..+ .+..|.+|..+|.|..|
T Consensus 267 ~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG---------~-~~w~~~~~-~~~~~~~~~~--~~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 267 LGSVNDFIVDGNRIYLVDQNDRVMALTIDGG---------V-TLWTQSDL-LHRLLTSPVL--YNGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CCCEEEEEEETTEEEEEETTCCEEEEETTTC---------C-EEEEECTT-TTSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CCCCCCceEECCEEEEEcCCCeEEEEECCCC---------c-EEEeeccc-CCCcccCCEE--ECCEEEEEeCCCeEEEE
Confidence 4556677788899999999999999998542 2 22322211 1122222333 35788899999999999
Q ss_pred ECCCCceeeeec
Q 000170 524 DVQRASAAKVIT 535 (1950)
Q Consensus 524 Dl~~g~~l~tl~ 535 (1950)
|..+|+.+....
T Consensus 334 d~~tG~~~~~~~ 345 (376)
T 3q7m_A 334 NVEDGRFVAQQK 345 (376)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCcEEEEEe
Confidence 999999876554
No 277
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=84.58 E-value=6.8 Score=45.42 Aligned_cols=100 Identities=9% Similarity=0.095 Sum_probs=62.4
Q ss_pred cccccCCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEE---
Q 000170 439 AFRRDHGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLA--- 513 (1950)
Q Consensus 439 ~f~~~~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~Las--- 513 (1950)
.++...+.|..++.++ .+++.....+.|.+||... ....+. ..........+..+++++||...++
T Consensus 80 ~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g--------~~~~~~-~~~~~~~~~~~~~i~~d~dG~l~~td~~ 150 (305)
T 3dr2_A 80 VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG--------QAHLLV-GRYAGKRLNSPNDLIVARDGAIWFTDPP 150 (305)
T ss_dssp EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--------CEEEEE-CEETTEECSCCCCEEECTTSCEEEECCS
T ss_pred EEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC--------CEEEEE-eccCCCccCCCCCEEECCCCCEEEeCcC
Confidence 3445567788898875 5444333457899998631 111111 1111112345788999999998887
Q ss_pred -ecC-------------CCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 514 -GYA-------------DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 514 -G~~-------------dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|.. .+.|..||..+|+..... +......++|++|
T Consensus 151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spd 198 (305)
T 3dr2_A 151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPD 198 (305)
T ss_dssp GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTT
T ss_pred CCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCC
Confidence 542 367888998888764432 3345678999987
No 278
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=83.97 E-value=6 Score=45.90 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCCcEEEEEcC--CEEEEEeCC------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec
Q 000170 444 HGSPQVLAVHP--SFIAVGMSK------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
...|..+++++ ++|.++.+. +.|.+||...+ ......... . ...+....|++++||...++.
T Consensus 187 ~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~-----~l~~~~~~~--~--~~~~~pdgi~~d~~G~lwv~~- 256 (305)
T 3dr2_A 187 LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG-----ALHDRRHFA--S--VPDGLPDGFCVDRGGWLWSSS- 256 (305)
T ss_dssp ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT-----EEEEEEEEE--C--CSSSCCCSEEECTTSCEEECC-
T ss_pred CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC-----CccCCeEEE--E--CCCCCCCeEEECCCCCEEEec-
Confidence 34566677765 677777665 78999987321 000011111 1 123456779999999955554
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
.+| |.+||. +|+.+..+. .+. .+.+++|.++ ++.+.+++..
T Consensus 257 ~~g-v~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d-----~~~L~it~~~ 297 (305)
T 3dr2_A 257 GTG-VCVFDS-DGQLLGHIP-TPG-TASNCTFDQA-----QQRLFITGGP 297 (305)
T ss_dssp SSE-EEEECT-TSCEEEEEE-CSS-CCCEEEECTT-----SCEEEEEETT
T ss_pred CCc-EEEECC-CCCEEEEEE-CCC-ceeEEEEeCC-----CCEEEEEcCC
Confidence 455 999998 577777775 333 5899999965 5567777764
No 279
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.40 E-value=2.3 Score=46.72 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=32.6
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
+....|.+|++. + .-+.-=.|..+||..|+. ..+.......|.||.|....
T Consensus 2 ~~~~~C~~C~~~--g----~ll~Cd~C~~~~H~~C~~-p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG--G----ELLCCEKCPKVFHLSCHV-PTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC--S----SCEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC--C----eeeecCCCCcccCccccC-CCCCCCCCCCEECccccCcc
Confidence 456789999853 1 122233699999999984 22222223459999998644
No 280
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.21 E-value=0.47 Score=45.32 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCCCeEEEecCC-----CcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCG-----HATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CG-----HafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
...|.||....... ..+ +..|+ |.||..|+.. =+..+ ....||+|...-..
T Consensus 15 ~~~C~IC~~~~~~~---~~l-~~pC~C~Gs~h~fH~~Cl~~-Wl~~~--~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDE---SPL-ITPCHCTGSLHFVHQACLQQ-WIKSS--DTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSS---SCE-ECSSSCCSSSCCEETTHHHH-HHHHH--CCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCC---Cee-EeccccCCcCCeeCHHHHHH-HHhhC--CCCCCCCCCCeeec
Confidence 57899998765432 234 57896 9999999962 11110 12589999876543
No 281
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=83.10 E-value=0.18 Score=53.28 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=32.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|.+|...+..+ +...|||.|+..|+. +-... ....||+|...
T Consensus 31 ~~~C~IC~~~~~~p------v~~~CgH~FC~~Ci~-~~~~~---~~~~CP~Cr~~ 75 (141)
T 3knv_A 31 KYLCSACRNVLRRP------FQAQCGHRYCSFCLA-SILSS---GPQNCAACVHE 75 (141)
T ss_dssp GGBCTTTCSBCSSE------EECTTSCEEEHHHHH-HHGGG---SCEECHHHHHT
T ss_pred CcCCCCCChhhcCc------EECCCCCccCHHHHH-HHHhc---CCCCCCCCCCc
Confidence 46899999887765 446999999999995 22221 23589999763
No 282
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=82.99 E-value=2.6 Score=51.49 Aligned_cols=76 Identities=11% Similarity=-0.006 Sum_probs=52.1
Q ss_pred cEEEEEcCCEEEEEeC-C--------CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE-EEEec-
Q 000170 447 PQVLAVHPSFIAVGMS-K--------GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL-LLAGY- 515 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts-~--------G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~-LasG~- 515 (1950)
+.++.+.++.+.++.. . +.+.+||.+.. ...+.+.. ......|+|++||++ +++..
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------~vv~~i~v-------g~~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG------QTSGPISN-------GHDSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------CEEECCEE-------EEEECEEEECCSSSCEEEEEET
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC------eEEEEEEC-------CCCcceEEECCCCCEEEEEccC
Confidence 3456666677777654 2 35669998542 11111111 125899999999984 55555
Q ss_pred CCCcEEEEECCCCceeeeec
Q 000170 516 ADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.+|+|.+||+.+++.++++.
T Consensus 335 ~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp TTTEEEEEESSSCEEEEECC
T ss_pred CCCeEEEEECCCCcEEEEEE
Confidence 59999999999999999986
No 283
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=82.88 E-value=0.2 Score=57.63 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
-..|.+|+..+... ..--.|+|.||..|+.. -... . ....||.|...
T Consensus 180 i~~C~iC~~iv~~g-----~~C~~C~~~~H~~C~~~-~~~~-~-~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG-----QSCETCGIRMHLPCVAK-YFQS-N-AEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC-----EECSSSCCEECHHHHHH-HTTT-C-SSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC-----cccCccChHHHHHHHHH-HHHh-C-CCCCCCCCCCC
Confidence 57899999888753 22224999999999842 1111 1 23589999863
No 284
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=82.80 E-value=0.4 Score=47.69 Aligned_cols=48 Identities=17% Similarity=0.082 Sum_probs=36.0
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
-.|....|.+|+..+..+ |+-.|||.|-..|+.. -.. ....||+|...
T Consensus 25 ~~p~~~~CpI~~~~m~dP------V~~~cGhtf~r~~I~~-~l~----~~~~cP~~~~~ 72 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDP------VRLPSGTIMDRSIILR-HLL----NSPTDPFNRQT 72 (100)
T ss_dssp SCSTTTBCTTTCSBCSSE------EEETTTEEEEHHHHHH-HTT----SCSBCSSSCCB
T ss_pred cCcHhhCCcCccCcccCC------eECCCCCEEchHHHHH-HHH----cCCCCCCCCCC
Confidence 346688999999888776 5567999999999852 221 23689999764
No 285
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=82.70 E-value=4.6 Score=49.03 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=49.0
Q ss_pred EEcCCEEEEEeC----------CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEec-CCC
Q 000170 451 AVHPSFIAVGMS----------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGY-ADG 518 (1950)
Q Consensus 451 a~s~~~IAvGts----------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~-~dG 518 (1950)
.+.++.+.++.. .+.|.++|.+.. ...+.+ .. .+...+|+||+||+ +|.++. .+|
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~------~vv~~i----~~---g~~p~~i~~s~Dg~~~l~v~~~~~~ 341 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG------QTSSQI----SL---GHDVDAISVAQDGGPDLYALSAGTE 341 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCC------EEEEEE----EC---CCCcCeEEECCCCCeEEEEEcCCCC
Confidence 333466666543 357999998541 111111 11 23589999999999 777776 699
Q ss_pred cEEEEECCCCceeeee
Q 000170 519 HVTVWDVQRASAAKVI 534 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl 534 (1950)
+|.+||+.+++.++++
T Consensus 342 ~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 342 VLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEECCCCCEEeee
Confidence 9999999999998884
No 286
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=80.98 E-value=0.41 Score=46.05 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=35.4
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
.+....|.+|+..+..+ |+-.|||.|-..|+.. -.. ....||+|...
T Consensus 11 ~p~~~~CpI~~~~m~dP------V~~~cGhtf~r~~I~~-~l~----~~~~cP~~~~~ 57 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDP------VRLPSGTVMDRSIILR-HLL----NSPTDPFNRQM 57 (85)
T ss_dssp CCTTTBCTTTCSBCSSE------EECTTSCEEEHHHHHH-HHH----HCSBCTTTCCB
T ss_pred CchheECcccCchhcCC------eECCCCCEECHHHHHH-HHh----cCCCCCCCcCC
Confidence 46678999999888776 5667999999999852 221 13689999754
No 287
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=80.44 E-value=0.58 Score=46.36 Aligned_cols=48 Identities=13% Similarity=-0.036 Sum_probs=35.9
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCC-CcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCG-HATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CG-HafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.|....|.+|...+..+ |+-.|| |.|-..|+.. -.. ....||+|...-
T Consensus 19 ~p~~~~CpI~~~~m~dP------V~~~cG~htf~r~cI~~-~l~----~~~~cP~~~~~l 67 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDP------VVLPSSRVTVDRSTIAR-HLL----SDQTDPFNRSPL 67 (98)
T ss_dssp CCTTTBCTTTCSBCSSE------EECTTTCCEEEHHHHHH-HTT----TSCBCTTTCSBC
T ss_pred CcHhcCCcCccccccCC------eECCCCCeEECHHHHHH-HHH----hCCCCCCCCCCC
Confidence 46678999999888776 567899 9999999852 221 136899997643
No 288
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=80.10 E-value=4 Score=50.78 Aligned_cols=79 Identities=13% Similarity=0.160 Sum_probs=54.7
Q ss_pred cEEEEEcCCEEEEEeC----------CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCC-EEEEec
Q 000170 447 PQVLAVHPSFIAVGMS----------KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGD-LLLAGY 515 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts----------~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~-~LasG~ 515 (1950)
+.++.+.++.+.+... .+.|.++|.+.. ...+.+-. + ...+.|+|++||+ +|.+..
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~------kvv~~I~v---g----~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG------ERINKIEL---G----HEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC------CEEEEEEE---E----EEECEEEECCSSSCEEEEEE
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC------eEEEEEEC---C----CCcCeEEEccCCCEEEEEEc
Confidence 4556666666666543 247999998542 11222221 1 2488999999999 777777
Q ss_pred -CCCcEEEEECCCCceeeee-ccCc
Q 000170 516 -ADGHVTVWDVQRASAAKVI-TGEH 538 (1950)
Q Consensus 516 -~dG~I~lWDl~~g~~l~tl-~~~H 538 (1950)
.+|+|.++|+.+++.++++ ..|+
T Consensus 390 ~~s~~VsVID~~t~kvv~tI~~vG~ 414 (426)
T 3c75_H 390 AGTQTLHIYDAATGEELRSVDQLGR 414 (426)
T ss_dssp TTTTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCCeEEEEECCCCCEEEEecCCCC
Confidence 6999999999999999887 3344
No 289
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=79.43 E-value=14 Score=42.91 Aligned_cols=116 Identities=8% Similarity=-0.066 Sum_probs=77.4
Q ss_pred CcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 446 SPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
....++.++..+.+....+.|.++|.+.. ...+.+..+ ........+..|.|. ||...+.-..++.|.+-|.
T Consensus 108 ~g~glt~Dg~~l~vs~gs~~l~viD~~t~------~v~~~I~Vg-~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 108 DGWGLATDGKILYGSDGTSILYEIDPHTF------KLIKKHNVK-YNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA 179 (266)
T ss_dssp SCCEEEECSSSEEEECSSSEEEEECTTTC------CEEEEEECE-ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred CeEEEEECCCEEEEECCCCeEEEEECCCC------cEEEEEEEC-CCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence 34567788876667667889999997531 111222211 111122347788888 8887788888999999999
Q ss_pred CCCceeeeeccC-c---------C--CCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 526 QRASAAKVITGE-H---------T--SPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 526 ~~g~~l~tl~~~-H---------~--~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
.+|+++.++.-+ - . ..-..|+|.++ +..+.|++-..+.+|...+
T Consensus 180 ~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~-----~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 180 KDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE-----NKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp TTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT-----TTEEEEEETTCSEEEEEEE
T ss_pred CCCcEEEEEECCCcccccccccccccCceEEEEEcCC-----CCEEEEECCCCCeEEEEEE
Confidence 999999888521 1 1 24578999986 4567777766665655554
No 290
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=79.32 E-value=2.8 Score=55.15 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=50.5
Q ss_pred CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeE
Q 000170 464 GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVV 543 (1950)
Q Consensus 464 G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~ 543 (1950)
|.|..||.+.+ + +.|... +..++....++.+|.++..|..||.++.||+.+|+++..+..++...-.
T Consensus 457 g~l~A~D~~tG---------~-~~W~~~---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 523 (677)
T 1kb0_A 457 GRLLAWDPVAQ---------K-AAWSVE---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAA 523 (677)
T ss_dssp EEEEEEETTTT---------E-EEEEEE---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cEEEEEeCCCC---------c-EEeecC---CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccC
Confidence 77899998542 2 233221 2234455567788999999999999999999999999888655543333
Q ss_pred EEEEecC
Q 000170 544 HTLFLGQ 550 (1950)
Q Consensus 544 ~v~F~~d 550 (1950)
-+.|..+
T Consensus 524 p~~y~~~ 530 (677)
T 1kb0_A 524 PSTYMVD 530 (677)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 3445555
No 291
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=79.31 E-value=3.5 Score=54.41 Aligned_cols=88 Identities=11% Similarity=0.122 Sum_probs=55.9
Q ss_pred CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCe
Q 000170 463 KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPV 542 (1950)
Q Consensus 463 ~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I 542 (1950)
+|.|..||.+++ + +.|.... ..++..-.++..|..|..|..||.|+.||..+|+.+-.+..++...-
T Consensus 454 ~g~l~A~D~~tG---------~-~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~ 520 (689)
T 1yiq_A 454 SGKLIAWDPVKQ---------Q-AAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMA 520 (689)
T ss_dssp EEEEEEEETTTT---------E-EEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ceeEEEEECCCC---------C-eEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCccc
Confidence 377899998542 2 2332221 12333335667889999999999999999999999877654443222
Q ss_pred EEEEEecCCCccCCceEEEEecCCc
Q 000170 543 VHTLFLGQDSQVTRQFKAVTGDTKG 567 (1950)
Q Consensus 543 ~~v~F~~d~~~~~~~~~~vssD~~G 567 (1950)
.-+.|..+ +++.+++.+-.+|
T Consensus 521 ~p~ty~~~----G~qyv~~~~G~gg 541 (689)
T 1yiq_A 521 APVTYSVD----GEQYVTFMAGWGG 541 (689)
T ss_dssp CCEEEEET----TEEEEEEEECCCT
T ss_pred CceEEEEC----CEEEEEEEecCCc
Confidence 33556655 3566666554443
No 292
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=78.78 E-value=25 Score=41.41 Aligned_cols=57 Identities=14% Similarity=0.024 Sum_probs=43.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEecC-----CCcEEEEECCCCceeeeecc-----CcCCCeEEEEEecC
Q 000170 494 RSPAPVTAMCFNQPGDLLLAGYA-----DGHVTVWDVQRASAAKVITG-----EHTSPVVHTLFLGQ 550 (1950)
Q Consensus 494 ~h~~~VtsLafS~DG~~LasG~~-----dG~I~lWDl~~g~~l~tl~~-----~H~~~I~~v~F~~d 550 (1950)
.+-..+..|+|+++|+..++... ++.|.+||+.+++.++++.. .+...+..++|.++
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~ 130 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI 130 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecC
Confidence 35678999999999997776654 68999999999998777642 12345788889864
No 293
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.29 E-value=1.1 Score=40.67 Aligned_cols=59 Identities=20% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~ 1814 (1950)
....|.+|+++.... ...|--=.|..-||..|+............+.|+.|..+..+.+
T Consensus 5 e~~~C~~C~~~~~~~--~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~s 63 (64)
T 1we9_A 5 SSGQCGACGESYAAD--EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSS 63 (64)
T ss_dssp SCCCCSSSCCCCCSS--SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSSC
T ss_pred CCCCCCCCCCccCCC--CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCCC
Confidence 356799999886432 12333337888899999964221111124699999998766554
No 294
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.28 E-value=0.83 Score=42.11 Aligned_cols=42 Identities=21% Similarity=0.469 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|..... .+++.+|||. |...|.. . ...||+|...-
T Consensus 14 ~~~~C~IC~~~~~------~~v~~pCgH~~~C~~C~~--~-------~~~CP~CR~~i 56 (68)
T 2ea5_A 14 NSKDCVVCQNGTV------NWVLLPCRHTCLCDGCVK--Y-------FQQCPMCRQFV 56 (68)
T ss_dssp CSSCCSSSSSSCC------CCEETTTTBCCSCTTHHH--H-------CSSCTTTCCCC
T ss_pred CCCCCCCcCcCCC------CEEEECCCChhhhHHHHh--c-------CCCCCCCCcch
Confidence 3578999975332 3677899999 9999984 1 36899998744
No 295
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=78.02 E-value=0.65 Score=53.70 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=35.9
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCC--cCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPL--CMP 1808 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~Cpi--C~~ 1808 (1950)
.....|.+|...+..+ ++.-.|||.|-..|+. +.... .....||+ |..
T Consensus 179 ~~el~CPIcl~~f~DP-----Vts~~CGHsFcR~cI~-~~~~~--~~~~~CPvtGCr~ 228 (267)
T 3htk_C 179 KIELTCPITCKPYEAP-----LISRKCNHVFDRDGIQ-NYLQG--YTTRDCPQAACSQ 228 (267)
T ss_dssp BCCSBCTTTSSBCSSE-----EEESSSCCEEEHHHHH-HHSTT--CSCEECSGGGCSC
T ss_pred ceeeECcCccCcccCC-----eeeCCCCCcccHHHHH-HHHHh--CCCCCCCcccccC
Confidence 4478999999998776 5556999999999995 22221 12368999 986
No 296
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=76.65 E-value=1.3 Score=42.01 Aligned_cols=40 Identities=28% Similarity=0.718 Sum_probs=30.0
Q ss_pred CcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..|.+|..... ..++.+|||. |-..|+. ....||+|...-
T Consensus 19 ~~C~IC~~~~~------~~v~~pCgH~~~C~~C~~---------~~~~CP~Cr~~i 59 (79)
T 2yho_A 19 MLCMVCCEEEI------NSTFCPCGHTVCCESCAA---------QLQSCPVCRSRV 59 (79)
T ss_dssp TBCTTTSSSBC------CEEEETTCBCCBCHHHHT---------TCSBCTTTCCBC
T ss_pred CEeEEeCcccC------cEEEECCCCHHHHHHHHH---------hcCcCCCCCchh
Confidence 47999975432 3677899999 9999984 135899998744
No 297
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=76.54 E-value=1.4 Score=53.30 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+.. .+..+|||. |...|+.. ...||+|...-
T Consensus 295 ~~~C~IC~~~~~~------~v~lpCgH~~fC~~C~~~---------~~~CP~CR~~i 336 (345)
T 3t6p_A 295 ERTCKVCMDKEVS------VVFIPCGHLVVCQECAPS---------LRKCPICRGII 336 (345)
T ss_dssp TCBCTTTSSSBCC------EEEETTCCEEECTTTGGG---------CSBCTTTCCBC
T ss_pred CCCCCccCCcCCc------eEEcCCCChhHhHHHHhc---------CCcCCCCCCCc
Confidence 3689999876543 466699999 99999841 26899998754
No 298
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=76.49 E-value=16 Score=44.77 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=62.5
Q ss_pred EEEc--CCEEEEEeCCC--cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 450 LAVH--PSFIAVGMSKG--AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 450 ia~s--~~~IAvGts~G--~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
++++ +++|.++..+| .|.+||...+ .... .++.........+.+++|+|++..|.++..+|.|..||.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~------~~~~--~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~ 247 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASG------WAPT--RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNV 247 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGT------TCEE--EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEET
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCC------ceeE--EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEEC
Confidence 5555 46788887766 7888886321 1111 111111113456789999995444555777999999999
Q ss_pred CCCceeeee---ccCcCCCe--EEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 526 QRASAAKVI---TGEHTSPV--VHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 526 ~~g~~l~tl---~~~H~~~I--~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.++.....- ..++...- .+++|.++ +..+.++.-..+.|+..
T Consensus 248 ~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~-----~g~lyv~d~~~~~I~~~ 294 (409)
T 3hrp_A 248 KTQEVTLIKQLELSGSLGTNPGPYLIYYFV-----DSNFYMSDQNLSSVYKI 294 (409)
T ss_dssp TTCCEEEEEECCCCSCCCCSSCCEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecccccCCCCCCccccEEEeCC-----CCEEEEEeCCCCEEEEE
Confidence 988643220 22332222 38999984 22344443334444443
No 299
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.46 E-value=1.3 Score=39.24 Aligned_cols=53 Identities=17% Similarity=0.358 Sum_probs=35.3
Q ss_pred CccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1749 HGYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1749 rG~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
.|-......|.+|++. + .-+.-=.|..+||..|+.- .+.......|.|+.|..
T Consensus 3 ~g~~~~~~~C~vC~~~--g----~ll~Cd~C~~~~H~~Cl~p-pl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKS--G----QLLMCDTCSRVYHLDCLDP-PLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCCSSCCSCSSSCCS--S----CCEECSSSSCEECSSSSSS-CCCSCCCSSCCCHHHHC
T ss_pred CCcCCCCCCCccCCCC--C----eEEEcCCCCcceECccCCC-CcCCCCCCceEChhhhC
Confidence 3555567889999974 1 2344458999999999962 22222234699999964
No 300
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=75.58 E-value=13 Score=46.42 Aligned_cols=99 Identities=9% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec-------------------CCCcEEE
Q 000170 462 SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY-------------------ADGHVTV 522 (1950)
Q Consensus 462 s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~-------------------~dG~I~l 522 (1950)
..|.|.++|.+.+ +... .+. .+....+---.+-|+||++++++.. ...+|.+
T Consensus 162 ~~g~v~vlD~~T~-------~v~~-~~~-~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v 232 (462)
T 2ece_A 162 GPGGILMLDHYSF-------EPLG-KWE-IDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHF 232 (462)
T ss_dssp SCCEEEEECTTTC-------CEEE-ECC-SBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEE
T ss_pred CCCeEEEEECCCC-------eEEE-EEc-cCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEE
Confidence 3478999997542 1110 111 1111112122467799999988884 4789999
Q ss_pred EECCCCceeeeeccC-cCCCeEEEEE--ecCCCccCCceEEEEec-----CCceEEEEcc
Q 000170 523 WDVQRASAAKVITGE-HTSPVVHTLF--LGQDSQVTRQFKAVTGD-----TKGLVQLHSL 574 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~-H~~~I~~v~F--~~d~~~~~~~~~~vssD-----~~G~V~~h~f 574 (1950)
||+.+++.++++.-+ ....-.+|.| +++ +..+.+++. .++.|+....
T Consensus 233 ~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pd-----g~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 233 WDLRKRKRIHSLTLGEENRMALELRPLHDPT-----KLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp EETTTTEEEEEEESCTTEEEEEEEEECSSTT-----CCEEEEEEEEETTTCCEEEEEEEE
T ss_pred EECCCCcEeeEEecCCCCCccceeEeeECCC-----CCEEEEEEeeeccCCCceEEEEEe
Confidence 999999988888654 2345668877 665 445555554 6677766543
No 301
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.36 E-value=0.99 Score=44.19 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=33.4
Q ss_pred cCCCcccccccccccCCCCCeEEEe-cCCCcccccccccccccCC--CCCCCCCCC--cCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVF-NCGHATHIQCELLENESSS--KSNLSGCPL--CMP 1808 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF-~CGHafH~~CL~~en~g~~--~~~~~~Cpi--C~~ 1808 (1950)
.....|.+|...+..+ |+- .|||.|-..|+.. -...+ ......||+ |..
T Consensus 5 ~~~~~CPI~~~~~~dP------V~~~~cGh~f~r~cI~~-~l~~~~~~~~~~~CP~tgc~~ 58 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP------VKNKVCGHTYEEDAIVR-MIESRQKRKKKAYCPQIGCSH 58 (94)
T ss_dssp SSCCBCTTTCSBCSSE------EEESSSCCEEEHHHHHH-HHHHHHTTTCCBCCCSTTCCC
T ss_pred CcEeECcCcCchhcCC------EEcCCCCCeecHHHHHH-HHHHccCcCCCCCCCcCcCcc
Confidence 3467899999887765 445 5999999999852 22110 012468999 864
No 302
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=73.36 E-value=3e+02 Score=38.44 Aligned_cols=112 Identities=9% Similarity=-0.011 Sum_probs=67.2
Q ss_pred CcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCC------CCEEEEecC-CC
Q 000170 446 SPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQP------GDLLLAGYA-DG 518 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~D------G~~LasG~~-dG 518 (1950)
.+++.++++.+|++++ .|.|.+|.+.. .+..... ..+ ..+.|+|+++.+. +.++|+|.. |+
T Consensus 515 ~I~~As~n~~~vvva~-g~~l~~fel~~-------~~L~~~~-~~~---l~~evscl~i~~~~~~~~~s~~~aVg~~~d~ 582 (1158)
T 3ei3_A 515 NISVASCNSSQVVVAV-GRALYYLQIHP-------QELRQIS-HTE---MEHEVACLDITPLGDSNGLSPLCAIGLWTDI 582 (1158)
T ss_dssp CCCEEEECSSEEEEEE-TTEEEEEEEET-------TEEEEEE-EEE---CSSCEEEEECCCCSSSTTCCSEEEEEETTTT
T ss_pred EEEEEEeCCCEEEEEE-CCEEEEEEeeC-------Cceeeec-ccC---CCCceEEEEeecCCCCcccccEEEEEECCCC
Confidence 4778888888899995 67888887621 1111111 111 2457999999864 479999996 99
Q ss_pred cEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 519 HVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
+|+|+++.+-+.+....-+-.....+|.+..-+ ++..+.++ =.+|.++...
T Consensus 583 tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~---~~~~L~ig-l~dG~l~~~~ 633 (1158)
T 3ei3_A 583 SARILKLPSFELLHKEMLGGEIIPRSILMTTFE---SSHYLLCA-LGDGALFYFG 633 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCSSCCEEEEEEEEET---TEEEEEEE-ETTSEEEEEE
T ss_pred EEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC---CCcEEEEE-eCCCeEEEEE
Confidence 999999987665533321212344555544211 13344444 4445554433
No 303
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.41 E-value=1.2 Score=55.53 Aligned_cols=61 Identities=16% Similarity=0.314 Sum_probs=53.7
Q ss_pred HHhhcCchHHHHHHhhCC-CCCHHHHHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHHHhh
Q 000170 1483 LLCRYERDSVLKFLETFD-SYRVEYCLRLCQEYGITDAAAFLLERVGDVGSALLLTLSELND 1543 (1950)
Q Consensus 1483 LLCqydP~~Vl~fLqt~~-~Y~Le~aL~iCee~~i~DA~ayLLeR~Gd~~eAL~liL~~L~~ 1543 (1950)
|+++|.|+++.+.|+.+- ..++-++++.|++...+.+++|||.+-.++..|...+++.-.+
T Consensus 272 LYsKY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~ 333 (624)
T 3lvg_A 272 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 333 (624)
T ss_dssp HHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChh
Confidence 567999999999999954 4889999999999999999999999999999998777655443
No 304
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=70.90 E-value=3.8 Score=38.20 Aligned_cols=51 Identities=22% Similarity=0.418 Sum_probs=31.2
Q ss_pred CcccccccccccCCCCCeEEEec--CC-CcccccccccccccCCCCCCCCCCCcCCCcCccc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFN--CG-HATHIQCELLENESSSKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~--CG-HafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~ 1814 (1950)
..| +|+++-.+. .|--=. |. ..||..|+.+. ......|.||.|..+.++.+
T Consensus 17 ~~C-~C~~~~~g~----MI~CD~~~C~~~wfH~~Cvgl~---~~p~g~w~Cp~C~~~~~k~~ 70 (71)
T 1wen_A 17 TYC-LCHQVSYGE----MIGCDNPDCSIEWFHFACVGLT---TKPRGKWFCPRCSQESGPSS 70 (71)
T ss_dssp CCS-TTCCCSCSS----EECCSCSSCSCCCEETTTTTCS---SCCSSCCCCTTTSSCSSSCC
T ss_pred CEE-ECCCCCCCC----EeEeeCCCCCCccEecccCCcC---cCCCCCEECCCCCccccccC
Confidence 445 899864321 111113 66 69999999642 22224699999987665444
No 305
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=70.53 E-value=1.9 Score=39.55 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
...|.+|+.. + .-+.-=.|.-+||..|+.- .+..-....|.|+.|..+..
T Consensus 8 ~~~C~vC~~~--g----~ll~CD~C~~~fH~~Cl~p-pl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 8 EDECAVCRDG--G----ELICCDGCPRAFHLACLSP-PLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCSBSSSSCC--S----SCEECSSCCCEECTTTSSS-CCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCccCCCC--C----CEEEcCCCChhhcccccCC-CcCcCCCCCeECccccCccc
Confidence 5789999963 1 2234447999999999961 12222224699999986543
No 306
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=69.60 E-value=1.1 Score=53.63 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCCcccccccccccCCCCCeEE--EecCCCccccccccc--cccc---CCCC-CCCCCCCcCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIR--VFNCGHATHIQCELL--ENES---SSKS-NLSGCPLCMP 1808 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~iv--VF~CGHafH~~CL~~--en~g---~~~~-~~~~CpiC~~ 1808 (1950)
....|.||-..+.........+ --.|||.||..|+.. ...+ ++.+ ....||.|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCC
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCC
Confidence 3568999997665422111111 137999999999952 1111 1111 1247999986
No 307
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=69.43 E-value=0.93 Score=49.04 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=32.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...+..+ +...|||.|...|+.. .... ....||+|...-
T Consensus 18 ~~~C~IC~~~~~~p------v~~~CgH~fC~~Ci~~-~~~~---~~~~CP~Cr~~~ 63 (170)
T 3hcs_A 18 KYECPICLMALREA------VQTPCGHRFCKACIIK-SIRD---AGHKCPVDNEIL 63 (170)
T ss_dssp GGBCTTTCSBCSSE------EECTTSCEEEHHHHHH-HHHH---HCSBCTTTCCBC
T ss_pred CCCCCCCChhhcCc------EECCCCCHHHHHHHHH-HHHh---CCCCCCCCccCc
Confidence 57899999887764 4469999999999952 2111 124899997543
No 308
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=69.28 E-value=3.3 Score=37.43 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|+.. + .-+.-=.|..+||..|+.- .+.......|.|+.|..+.
T Consensus 8 ~~~~C~vC~~~--g----~ll~Cd~C~~~fH~~Cl~p-pl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG--G----ELLCCDTCPSSYHIHCLNP-PLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC--S----SCBCCSSSCCCBCSSSSSS-CCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC--C----CEEEcCCCCHHHcccccCC-CcCcCCCCccCChhhcCch
Confidence 35779999862 1 1122226999999999962 2222223469999998644
No 309
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.97 E-value=3.5 Score=40.34 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=32.3
Q ss_pred CCcccccccccccCCCCCeEEEec--CC-CcccccccccccccCCCCCCCCCCCcCCCcCccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFN--CG-HATHIQCELLENESSSKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~--CG-HafH~~CL~~en~g~~~~~~~~CpiC~~~~~~~~ 1814 (1950)
...+++|+++-.+. .|--=. |. ..||..|+.... .....|.||.|..+.++.+
T Consensus 35 e~~yCiC~~~~~g~----MI~CD~~dC~~~WfH~~CVgl~~---~p~g~W~Cp~C~~~~~k~~ 90 (91)
T 1weu_A 35 EPTYCLCHQVSYGE----MIGCDNPDCSIEWFHFACVGLTT---KPRGKWFCPRCSQESGPSS 90 (91)
T ss_dssp CCBCSTTCCBCCSC----CCCCSCSSCSCCCCCSTTTTCSS---CCCSSCCCTTTCCCCSSSC
T ss_pred CCcEEECCCCCCCC----EeEecCCCCCCCCEecccCCcCc---CCCCCEECcCccCcCCcCC
Confidence 44444999875432 111113 66 689999996422 2224699999987665444
No 310
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=67.78 E-value=12 Score=42.91 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=62.9
Q ss_pred EEEEEc-CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 448 QVLAVH-PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 448 t~ia~s-~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
.+++.. ...|.+|+.+|.|..||.+ + +. .+.... ....+.++.+.++|...+++ |.|..|| .
T Consensus 140 ~~~~~~~~g~l~vgt~~~~l~~~d~~-g---------~~-~~~~~~--~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~ 202 (330)
T 3hxj_A 140 ATPIVSEDGTIYVGSNDNYLYAINPD-G---------TE-KWRFKT--NDAITSAASIGKDGTIYFGS---DKVYAIN-P 202 (330)
T ss_dssp SCCEECTTSCEEEECTTSEEEEECTT-S---------CE-EEEEEC--SSCCCSCCEECTTCCEEEES---SSEEEEC-T
T ss_pred eeeEEcCCCEEEEEcCCCEEEEECCC-C---------CE-eEEEec--CCCceeeeEEcCCCEEEEEe---CEEEEEC-C
Confidence 334444 3568889999999999874 2 11 111111 24467888888899866655 8999999 7
Q ss_pred CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 527 RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 527 ~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
+|+...... .+...|.++.+.++ ..+.+++.++|+..+
T Consensus 203 ~g~~~~~~~-~~~~~~~~~~~~~~------g~l~v~t~~~gl~~~ 240 (330)
T 3hxj_A 203 DGTEKWNFY-AGYWTVTRPAISED------GTIYVTSLDGHLYAI 240 (330)
T ss_dssp TSCEEEEEC-CSSCCCSCCEECTT------SCEEEEETTTEEEEE
T ss_pred CCcEEEEEc-cCCcceeceEECCC------CeEEEEcCCCeEEEE
Confidence 887665553 33455667776654 245555555554444
No 311
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=67.50 E-value=29 Score=48.49 Aligned_cols=112 Identities=7% Similarity=0.034 Sum_probs=76.8
Q ss_pred cCCCcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 443 DHGSPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 443 ~~G~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
--|.|+|++.-+.+|++|- ..+|++|+++. +...+ + . . .+...|.++.....|.++++|..-..|.+
T Consensus 884 v~g~v~al~~~~g~Lla~i-g~~l~vy~l~~------~~~L~--~-~-~--~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~ 950 (1158)
T 3ei3_A 884 VKGAVYSMVEFNGKLLASI-NSTVRLYEWTT------EKELR--T-E-C--NHYNNIMALYLKTKGDFILVGDLMRSVLL 950 (1158)
T ss_dssp ESSCEEEEEEETTEEEEEE-TTEEEEEEECT------TSCEE--E-E-E--EECCCSCEEEEEEETTEEEEEESSBCEEE
T ss_pred cCCcCEEEeeeCCEEEEEc-CCEEEEEECCC------CceEE--E-E-e--eccccEEEEEEeccCCEEEEEEhhheEEE
Confidence 4689999988777888885 46899999853 11121 1 1 0 11233555555567999999999988877
Q ss_pred E--ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 523 W--DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 523 W--Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+ +...++..-.-.+.+...|+++.|..+ ..++++|..|.++....
T Consensus 951 ~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-------~t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 951 LAYKPMEGNFEEIARDFNPNWMSAVEILDD-------DNFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEEETTTTEEEEEEECCSCBCEEEEEEEET-------TEEEEEETTSEEEEEEE
T ss_pred EEEEcCCCeEEEEEeecccccEEEEEEEcc-------CcEEEEcCCCcEEEEec
Confidence 5 444455444444567789999999965 25777999998877654
No 312
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=67.39 E-value=30 Score=40.91 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=47.0
Q ss_pred EcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCC-------CCCeEEEEEcCCCCEEEEecCCCcEEEEE
Q 000170 452 VHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRS-------PAPVTAMCFNQPGDLLLAGYADGHVTVWD 524 (1950)
Q Consensus 452 ~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h-------~~~VtsLafS~DG~~LasG~~dG~I~lWD 524 (1950)
+.+..|.+++.+|.|..||.+.+ + ..|....... ...+.+. ...++..|.+|..+|.|..+|
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG---------~-~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d 119 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDG---------K-EIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALN 119 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTC---------C-EEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCC---------c-eeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEE
Confidence 45688999999999999998532 2 1222122111 2233322 223566788888999999999
Q ss_pred CCCCceeeee
Q 000170 525 VQRASAAKVI 534 (1950)
Q Consensus 525 l~~g~~l~tl 534 (1950)
..+|+.+-..
T Consensus 120 ~~tG~~~W~~ 129 (376)
T 3q7m_A 120 TSDGTVAWQT 129 (376)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999976444
No 313
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=67.36 E-value=8.5 Score=46.86 Aligned_cols=66 Identities=5% Similarity=-0.030 Sum_probs=49.2
Q ss_pred EEEcCCCCEEEEecC---------CCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEec-CCceEEE
Q 000170 502 MCFNQPGDLLLAGYA---------DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGD-TKGLVQL 571 (1950)
Q Consensus 502 LafS~DG~~LasG~~---------dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD-~~G~V~~ 571 (1950)
++|++||++|.++.. ++.+.+||+.+++.++++..+. ...+++|++| +..++++.. ..|.|..
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~D-----g~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQD-----GASDNYANSAGTEVLDI 341 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCS-----SSCEEEEEETTTTEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCC-----CCEEEEEccCCCCeEEE
Confidence 689999998887633 2456799999999999886444 6899999998 344666665 4666666
Q ss_pred Ecc
Q 000170 572 HSL 574 (1950)
Q Consensus 572 h~f 574 (1950)
+..
T Consensus 342 ID~ 344 (368)
T 1mda_H 342 YDA 344 (368)
T ss_dssp EES
T ss_pred EEC
Confidence 654
No 314
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=67.20 E-value=3.2 Score=38.15 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|.+|++. ..-+.==.|..+||..|+.- -+..-....|.|+.|...
T Consensus 12 ~~~C~vC~~~------~~ll~Cd~C~~~~H~~Cl~P-~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG------TDVLRCTHCAAAFHWRCHFP-AGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC------TTCEECSSSCCEECHHHHCT-TTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC------CeEEECCCCCCceecccCCC-ccCcCCCCCEECccccCC
Confidence 5789999852 12244447999999999941 122222246999999754
No 315
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=67.04 E-value=99 Score=35.60 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=49.6
Q ss_pred CCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC--cE
Q 000170 445 GSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG--HV 520 (1950)
Q Consensus 445 G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG--~I 520 (1950)
..|..+++++ .++++-..+|.|..||... . ....+. . .+.+..|+|++||+.+++.+... .|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g--------~-~~~~~~--~---~~~p~gia~~~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG--------N-QQIHAT--V---EGKVSGLAFTSNGDLVATGWNADSIPV 97 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC--------C-EEEEEE--C---SSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC--------c-eEEEEe--C---CCCceeEEEcCCCcEEEEeccCCcceE
Confidence 4678888864 5555556789999998632 1 111221 1 24689999999999777765533 47
Q ss_pred EEEECCCCceee
Q 000170 521 TVWDVQRASAAK 532 (1950)
Q Consensus 521 ~lWDl~~g~~l~ 532 (1950)
..+|..+|+...
T Consensus 98 ~~~d~~~g~~~~ 109 (306)
T 2p4o_A 98 VSLVKSDGTVET 109 (306)
T ss_dssp EEEECTTSCEEE
T ss_pred EEEcCCCCeEEE
Confidence 778888887643
No 316
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=65.70 E-value=1.3e+02 Score=37.47 Aligned_cols=85 Identities=7% Similarity=0.074 Sum_probs=53.3
Q ss_pred cCCCcEEEEEc--CCEEEEEeCCCcEEEEeCCCCCCccCc------ccceeeeecccCCCCCCCeEEEEEcCC---CCEE
Q 000170 443 DHGSPQVLAVH--PSFIAVGMSKGAIVVVPGKYSAHHRDS------MDSKMMMLGLLGDRSPAPVTAMCFNQP---GDLL 511 (1950)
Q Consensus 443 ~~G~pt~ia~s--~~~IAvGts~G~I~vfd~k~~~~~~d~------~~~k~~~l~~~~~~h~~~VtsLafS~D---G~~L 511 (1950)
.++.+.-+.++ |+++|+-+.++ |.|..+=.+.+..+. -..+.+.++.......++|..+-|.|- |.+|
T Consensus 64 ~f~~i~qlvlSpsG~lLAl~g~~~-V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 64 VLDDTFHVISSTSGDLLCLFNDNE-IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp CCCTTCEEEECTTSSEEEEECSSE-EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ccCceeEEEECCCCCEEEEecCCe-EEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 35566555555 58999998774 555555212221111 111223332211124688999999886 5689
Q ss_pred EEecCCCcEEEEECCCC
Q 000170 512 LAGYADGHVTVWDVQRA 528 (1950)
Q Consensus 512 asG~~dG~I~lWDl~~g 528 (1950)
++=..|+.|++||+.+.
T Consensus 143 VVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 143 VVLKEDDTITMFDILNS 159 (452)
T ss_dssp EEEETTSCEEEEETTCT
T ss_pred EEEecCCEEEEEEcccC
Confidence 99999999999999974
No 317
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.70 E-value=7.9 Score=39.14 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=36.4
Q ss_pred cCccc-cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1748 SHGYA-PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1748 ~rG~~-p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|. +.-..|.+|++.=..+ ..-+.--.|..+||..|+. ..+..-....|.|+.|.++
T Consensus 53 ~~~W~C~~C~~C~vC~~~~~~~--~~ll~Cd~C~~~yH~~Cl~-p~l~~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 53 ALRWQCIECKTCSSCRDQGKNA--DNMLFCDSCDRGFHMECCD-PPLTRMPKGMWICQICRPR 112 (112)
T ss_dssp TSCCCCTTTCCBTTTCCCCCTT--CCCEECTTTCCEECGGGCS-SCCSSCCSSCCCCTTTSCC
T ss_pred ccccccccCCccccccCcCCCc--cceEEcCCCCCeeecccCC-CCCCCCCCCCeECCCCCCc
Confidence 55776 3445799998642111 1234444799999999994 2222222246999999863
No 318
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=63.50 E-value=67 Score=37.40 Aligned_cols=104 Identities=9% Similarity=-0.052 Sum_probs=67.9
Q ss_pred cEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 447 PQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
...++..+..|.+....+.|.++|-+.. +....+... ........+.-|.|. ||+..|.-+.+..|.+-|..
T Consensus 138 GwGLt~Dg~~L~vSdGs~~l~~iDp~T~------~v~~~I~V~-~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 138 GWGLCYWNGKLVRSDGGTMLTFHEPDGF------ALVGAVQVK-LRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CCCEEEETTEEEEECSSSEEEEECTTTC------CEEEEEECE-ETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred eeEEecCCCEEEEECCCCEEEEEcCCCC------eEEEEEEeC-CCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 3456677887888777889999997532 111222111 111223456777776 88888888889999999999
Q ss_pred CCceeeeeccC----------c-C-CCeEEEEEecCCCccCCceEEEEe
Q 000170 527 RASAAKVITGE----------H-T-SPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 527 ~g~~l~tl~~~----------H-~-~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
+|+++.++.-+ + . .--+.|+|.++ .+.+.|++
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~-----~~rlfVTG 253 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG-----SGRIFMTG 253 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT-----TCCEEEEE
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCC-----CCEEEEeC
Confidence 99999887421 1 1 23467888875 34566654
No 319
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.38 E-value=4.1 Score=35.17 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=30.7
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMP 1808 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~ 1808 (1950)
.|.+|++.=.. ..-+.--.|..+||..|+.- .+.......+.|+.|..
T Consensus 2 ~C~vC~~~~~~---~~ll~Cd~C~~~~H~~Cl~p-~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED---DKLILCDECNKAFHLFCLRP-ALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC---SCCEECTTTCCEECHHHHCT-TCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC---CCEEECCCCChhhCcccCCC-CcCCCCCCcEECcCccc
Confidence 58999875221 12344448999999999941 22222224699999975
No 320
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=63.17 E-value=4.2 Score=45.54 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....|.+|++. + .-+.-=.|..+||..|+. ..+..-....|.||.|....
T Consensus 6 ~~~~C~~C~~~--g----~ll~Cd~C~~~~H~~Cl~-p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG--G----DLLCCEKCPKVFHLTCHV-PTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC--E----EEEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC--C----ceEEcCCCCCccCCccCC-CCCCCCCCCCEEeCceeCcc
Confidence 35789999853 1 112222699999999994 22222222459999998644
No 321
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=62.19 E-value=2.3 Score=42.06 Aligned_cols=45 Identities=24% Similarity=0.514 Sum_probs=33.5
Q ss_pred cccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.|..|+.|+.-- .++..|+|+|-..|... ...+ ....||.|...-
T Consensus 3 fC~~C~~Pi~iy-----gRmIPCkHvFCydCa~~-~~~~---~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVY-----GRMIPCKHVFCYDCAIL-HEKK---GDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEE-----EEEETTCCEEEHHHHHH-HHHT---TCCBCTTTCCBC
T ss_pred ecCccCCCeEEE-----eeeccccccHHHHHHHH-HHhc---cCCCCcCcCCee
Confidence 599999988764 58899999999999852 1111 246899998644
No 322
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.63 E-value=2.8 Score=38.20 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=34.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccC---CCCCCCCCCCcCCCcC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESS---SKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~---~~~~~~~CpiC~~~~~ 1811 (1950)
....|.+|++.-..+. ..-+.-=.|.-+||..|+.- .+.. .....|.|+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~-~~ll~Cd~C~~~~H~~C~~p-~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAP-NEMVICDKCGQGYHQLCHTP-HIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTT-BCEEECSSSCCEEETTTSSS-CCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCC-CCEEECCCCChHHHhhhCCC-cccccccCCCCCEECCCCcCccc
Confidence 3578999997532211 12233337999999999963 1111 0124599999986543
No 323
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=61.19 E-value=3.9 Score=36.68 Aligned_cols=49 Identities=16% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|++. + .-+.-=.|..+||..|+.- .+.......|.|+.|...
T Consensus 4 ~~~~C~vC~~~--g----~ll~Cd~C~~~fH~~Cl~p-pl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS--G----QLLMCDTCSRVYHLDCLDP-PLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC--S----SCEECSSSSCEECGGGSSS-CCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC--C----cEEEcCCCCcCEECCcCCC-CcCCCCCCceEChhccCh
Confidence 45789999973 1 2244447999999999962 122222346999999753
No 324
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=60.65 E-value=25 Score=40.30 Aligned_cols=80 Identities=8% Similarity=0.037 Sum_probs=53.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeee
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKV 533 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~t 533 (1950)
...|.+|+.+|.|..||.+ + +. .+.... ....+.++++.++|. |..|..+|.|..||.. |+....
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g---------~~-~~~~~~--~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-G---------TE-KWRFKT--KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-S---------CE-EEEEEC--SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CCEEEEEecCCEEEEEcCC-C---------CE-EEEEcC--CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 6789999999999999863 2 11 121111 234577778888888 5557778999999999 877655
Q ss_pred eccCcCCCeEEEEEec
Q 000170 534 ITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 534 l~~~H~~~I~~v~F~~ 549 (1950)
.. .+...+.++.+..
T Consensus 172 ~~-~~~~~~~~~~~d~ 186 (330)
T 3hxj_A 172 FK-TNDAITSAASIGK 186 (330)
T ss_dssp EE-CSSCCCSCCEECT
T ss_pred Ee-cCCCceeeeEEcC
Confidence 53 3334455555543
No 325
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=60.23 E-value=1.4 Score=39.80 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=29.8
Q ss_pred CCcccccccccccCCCCCeEEEecCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|....... .+++.+|||. |-..|... ... ....||+|...-
T Consensus 7 ~~~C~IC~~~~~~~----~~~~~pCgH~~~C~~C~~~--~~~---~~~~CPiCR~~i 54 (63)
T 2vje_B 7 LKPCSLCEKRPRDG----NIIHGRTGHLVTCFHCARR--LKK---AGASCPICKKEI 54 (63)
T ss_dssp GSBCTTTSSSBSCE----EEEETTEEEEEECHHHHHH--HHH---TTCBCTTTCCBC
T ss_pred CCCCcccCCcCCCe----EEEecCCCCHhHHHHHHHH--HHH---hCCcCCCcCchh
Confidence 46799998543221 1223389998 99999842 111 125899998743
No 326
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=59.93 E-value=15 Score=48.77 Aligned_cols=99 Identities=7% Similarity=-0.033 Sum_probs=59.4
Q ss_pred EEE-EcCCEEEEEeCC-C----cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCC-----
Q 000170 449 VLA-VHPSFIAVGMSK-G----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYAD----- 517 (1950)
Q Consensus 449 ~ia-~s~~~IAvGts~-G----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~d----- 517 (1950)
++. +++++||.+.+. | .|.++|+..+ . +. . .... ......++|||||+.|+....+
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g------~--~~-l-~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP------S--QT-I-ADKV---SGTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCT------T--CC-C-CCCE---EEECSCCEECSSTTEEEEEEECTTCCE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCC------C--Ee-C-Cccc---cCceeeEEEecCCCEEEEEEECCCCCC
Confidence 344 456889977654 3 4999998532 0 10 0 0000 1114568899999988877665
Q ss_pred CcEEEEECCCCcee--eeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 518 GHVTVWDVQRASAA--KVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 518 G~I~lWDl~~g~~l--~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
..|.+|++.++... ..+...+..-..++.|++| +..+++++..
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-----g~~l~~~~~~ 291 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-----TNTLCIGSQS 291 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT-----SSEEEEEEEC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCC-----CCEEEEEecC
Confidence 36999999887532 2232233345778899998 3455555543
No 327
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=59.30 E-value=4.4 Score=36.57 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|++. + .-+.-=.|..+||..|+.. .+.......|.|+.|..+
T Consensus 10 ~~~~C~vC~~~--g----~ll~CD~C~~~fH~~Cl~p-~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG--G----EIILCDTCPRAYHMVCLDP-DMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC--S----SEEECSSSSCEEEHHHHCT-TCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC--C----cEEECCCCChhhhhhccCC-CCCCCCCCceECcccccc
Confidence 35789999972 1 2233337888999999963 222222346999999753
No 328
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=58.75 E-value=87 Score=36.32 Aligned_cols=103 Identities=7% Similarity=0.076 Sum_probs=64.4
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCC
Q 000170 448 QVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQR 527 (1950)
Q Consensus 448 t~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~ 527 (1950)
-.++..+..|.+....+.|.++|-+.. .....+... ........+.-|.+. ||+..|.-..++.|.+.|..+
T Consensus 130 ~glt~dg~~L~~SdGs~~i~~iDp~T~------~v~~~I~V~-~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~t 201 (262)
T 3nol_A 130 WGLTHNDQYLIMSDGTPVLRFLDPESL------TPVRTITVT-AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPET 201 (262)
T ss_dssp CCEEECSSCEEECCSSSEEEEECTTTC------SEEEEEECE-ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTT
T ss_pred eEEecCCCEEEEECCCCeEEEEcCCCC------eEEEEEEec-cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCC
Confidence 345566766666655678999997532 111122111 111122345557775 898888888999999999999
Q ss_pred CceeeeeccC---------c--CCCeEEEEEecCCCccCCceEEEEe
Q 000170 528 ASAAKVITGE---------H--TSPVVHTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 528 g~~l~tl~~~---------H--~~~I~~v~F~~d~~~~~~~~~~vss 563 (1950)
|+++.++... + ..--+.|+|.++ .+.+.|++
T Consensus 202 G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~-----~~~lfVTG 243 (262)
T 3nol_A 202 GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE-----HHRLFVTG 243 (262)
T ss_dssp CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT-----TTEEEEEE
T ss_pred CcEEEEEECCcCccccccccCcCCceEEEEEcCC-----CCEEEEEC
Confidence 9999888531 1 123467888875 44566654
No 329
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=58.10 E-value=1.1e+02 Score=35.32 Aligned_cols=107 Identities=10% Similarity=-0.039 Sum_probs=62.8
Q ss_pred cEEEEEcC-CEEEEEeC---CCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 447 PQVLAVHP-SFIAVGMS---KGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 447 pt~ia~s~-~~IAvGts---~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
|.-+++++ ..+.+++. .+.|.++|.+.+ .-...+. ...+ ...-.+++. +++..++.-.++.|.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg------~v~~~i~----l~~~-~fgeGi~~~-g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTG------KVENIHK----MDDS-YFGEGLTLL-NEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTC------CEEEEEE----CCTT-CCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCC------CEEEEEe----cCCC-cceEEEEEe-CCEEEEEEecCCEEEE
Confidence 57788887 67777764 579999998642 1111111 1111 122345554 2344556677899999
Q ss_pred EECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 523 WDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+|..+++.+.++.-+ ...=+.++ +| +..+.+ +|..+.|+...-
T Consensus 91 iD~~t~~v~~~i~~g-~~~g~glt--~D-----g~~l~v-s~gs~~l~viD~ 133 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQ-MKDGWGLA--TD-----GKILYG-SDGTSILYEIDP 133 (266)
T ss_dssp EETTTTEEEEEEECC-SSSCCEEE--EC-----SSSEEE-ECSSSEEEEECT
T ss_pred EECCCCcEEEEEECC-CCCeEEEE--EC-----CCEEEE-ECCCCeEEEEEC
Confidence 999999999988534 11113333 34 223444 456666666653
No 330
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=57.77 E-value=95 Score=35.88 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=58.6
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEecC----
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAGYA---- 516 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG~~---- 516 (1950)
.+.|..|++++ ..|.+++..+.|..||...+ ..+.+. .............|++.+ ||...++-..
T Consensus 79 ~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g-------~~~~~~-~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~ 150 (322)
T 2fp8_A 79 CGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGG-------HATQLA-TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYD 150 (322)
T ss_dssp HCCEEEEEEETTTTEEEEEETTTEEEEECTTCE-------ECEEEE-SEETTEECSCEEEEEECTTTCCEEEEESCSSCC
T ss_pred CCCCceEEEcCCCCcEEEEECCCCEEEEeCCCC-------EEEEec-ccCCCCcccccceEEEecCCCEEEEECCccccc
Confidence 45789999884 67888866666888886321 111111 100111123578899999 9987766432
Q ss_pred -------------CCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 517 -------------DGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 517 -------------dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+|.|..||..+++...... + ...-..|+|.++
T Consensus 151 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~-~~~p~gia~~~d 195 (322)
T 2fp8_A 151 DRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-E-LHVPGGAEVSAD 195 (322)
T ss_dssp TTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-E-ESCCCEEEECTT
T ss_pred ccccceehcccCCCceEEEEeCCCCEEEEecc-C-CccCcceEECCC
Confidence 4789999988776533222 1 123456788876
No 331
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=56.61 E-value=60 Score=42.66 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeee
Q 000170 497 APVTAMCFNQPGD---LLLAGYADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 497 ~~VtsLafS~DG~---~LasG~~dG~I~lWDl~~g~~l~tl 534 (1950)
+++....+..+|+ .|++|..+|.|++||..+|+.+-..
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 3444445555887 8999999999999999999987444
No 332
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.14 E-value=3.6 Score=39.00 Aligned_cols=54 Identities=17% Similarity=0.421 Sum_probs=33.5
Q ss_pred CCcccccccccccCCCCCeEEEe----cCCCcccccccccccccC----CCCCCCCCCCcCCCcCccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF----NCGHATHIQCELLENESS----SKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF----~CGHafH~~CL~~en~g~----~~~~~~~CpiC~~~~~~~~ 1814 (1950)
...| +|+++-.. ...|- .|..-||..|+....... .....+.|+.|.++....+
T Consensus 16 ~~~C-iC~~~~~~-----g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s 77 (78)
T 1wew_A 16 KVRC-VCGNSLET-----DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77 (78)
T ss_dssp CCCC-SSCCCCCC-----SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCC
T ss_pred CEEe-ECCCcCCC-----CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCCC
Confidence 3556 89987322 23333 799999999996422110 1124699999987654433
No 333
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=53.82 E-value=4.3 Score=37.99 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=33.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|+++-... ..|.-=.|.-.||..|+..... ......|.||.|..+.
T Consensus 18 ~~~C~~C~~~~~~~---~mi~CD~C~~wfH~~Cv~~~~~-~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 18 IWICPGCNKPDDGS---PMIGCDDCDDWYHWPCVGIMAA-PPEEMQWFCPKCANKI 69 (75)
T ss_dssp EECBTTTTBCCSSC---CEEECSSSSSEEEHHHHTCSSC-CCSSSCCCCTTTHHHH
T ss_pred CcCCCCCCCCCCCC---CEEEcCCCCcccccccCCCCcc-CCCCCCEEChhccCch
Confidence 35799999874322 2233347999999999964221 1112469999997643
No 334
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=53.59 E-value=1.5e+02 Score=34.00 Aligned_cols=82 Identities=12% Similarity=0.112 Sum_probs=54.4
Q ss_pred CcEEEEEcCCEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEEC
Q 000170 446 SPQVLAVHPSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDV 525 (1950)
Q Consensus 446 ~pt~ia~s~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl 525 (1950)
..-.++..+..|.+....+.|.++|-+.. .....+... ........+.-|.+. +|...|.-..+..|.+.|.
T Consensus 106 ~Gwglt~dg~~L~vSdgs~~l~~iDp~t~------~~~~~I~V~-~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 106 EGWALTSDDSHLYMSDGTAVIRKLDPDTL------QQVGSIKVT-AGGRPLDNLNELEWV-NGELLANVWLTSRIARIDP 177 (243)
T ss_dssp CCCEEEECSSCEEEECSSSEEEEECTTTC------CEEEEEECE-ETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECT
T ss_pred CceEEeeCCCEEEEECCCCeEEEEeCCCC------eEEEEEEEc-cCCcccccceeeEEe-CCEEEEEECCCCeEEEEEC
Confidence 34566677777777777889999997532 111222211 111122445666664 8888888888999999999
Q ss_pred CCCceeeeec
Q 000170 526 QRASAAKVIT 535 (1950)
Q Consensus 526 ~~g~~l~tl~ 535 (1950)
.+|+++.++.
T Consensus 178 ~tG~V~~~id 187 (243)
T 3mbr_X 178 ASGKVVAWID 187 (243)
T ss_dssp TTCBEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9999988874
No 335
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=53.50 E-value=24 Score=36.95 Aligned_cols=60 Identities=13% Similarity=0.298 Sum_probs=41.4
Q ss_pred ccccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1750 GYAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1750 G~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
+.......|.+|++++..- .+...+-..|.|-+-.+|-..-..+ .....|.|-+|....+
T Consensus 50 ~~~~~~~~C~~C~~~~g~l-~~~g~~C~~C~~~VC~~C~~~~~~~-~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 50 VAGDGVNRCILCGEQLGML-GSASVVCEDCKKNVCTKCGVETSNN-RPHPVWLCKICLEQRE 109 (134)
T ss_dssp CCSCSSSBCSSSCCBCSTT-SCCEEECTTTCCEEETTSEEECCCS-SSSCCEEEHHHHHHHH
T ss_pred hccCCCccccccCCCcccc-cCCCCCCCCCCcccccccCCccCCC-CCccceechhhHHHHH
Confidence 3335678999999999532 1345788899999999997532111 2234699999987543
No 336
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=53.43 E-value=10 Score=50.47 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=44.7
Q ss_pred CeEEEEEc-CCCCEEEEecC-----CCcEEEEECCCC-ceee-eeccCcCCCeEEEEEecCCCccCCceEEEEecCCc--
Q 000170 498 PVTAMCFN-QPGDLLLAGYA-----DGHVTVWDVQRA-SAAK-VITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKG-- 567 (1950)
Q Consensus 498 ~VtsLafS-~DG~~LasG~~-----dG~I~lWDl~~g-~~l~-tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G-- 567 (1950)
.+.+.+|| |||++||-+.. ..+|+++|+.+| +.+. .+. ....+++|++|+ +....++.|..+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg----~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDH----TSLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSST----TEEEEEEECTTCCE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCC----CEEEEEEECCCCCC
Confidence 68899999 99999995433 235999999999 6321 121 124567899883 334444444433
Q ss_pred -eEEEEcc
Q 000170 568 -LVQLHSL 574 (1950)
Q Consensus 568 -~V~~h~f 574 (1950)
.||.|..
T Consensus 247 ~~v~~~~l 254 (751)
T 2xe4_A 247 NKVWRHVM 254 (751)
T ss_dssp EEEEEEET
T ss_pred CEEEEEEC
Confidence 4677764
No 337
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=53.34 E-value=77 Score=41.49 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=30.3
Q ss_pred eEEEEEcCCC---CEEEEecCCCcEEEEECCCCceeeeec
Q 000170 499 VTAMCFNQPG---DLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 499 VtsLafS~DG---~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
...+.+..|| ..|++|..+|.|.++|..+|+.+-.+.
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 4444566689 789999999999999999999876554
No 338
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=53.33 E-value=1.4e+02 Score=39.40 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=70.1
Q ss_pred CCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccC---CCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 445 GSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLG---DRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 445 G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~---~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
..+.|++.+. ..|-+||.+|-|..||.+.+ ..+.+...... .-....|.+|+..++|..|-.|..+|-|
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl 429 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQ-------RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGL 429 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTC-------CEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEE
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCC-------cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCce
Confidence 3478888875 46888999988999986431 11111100000 0124679999999999955666666679
Q ss_pred EEEECCCCceeeeecc---CcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 521 TVWDVQRASAAKVITG---EHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 521 ~lWDl~~g~~l~tl~~---~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
..||..+++..+.... .+...|.++....+ ..+.+++. .|+..+.
T Consensus 430 ~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~------g~lwigt~-~Gl~~~~ 477 (795)
T 4a2l_A 430 SILHRNSGQVENFNQRNSQLVNENVYAILPDGE------GNLWLGTL-SALVRFN 477 (795)
T ss_dssp EEEETTTCCEEEECTTTSCCSCSCEEEEEECSS------SCEEEEES-SCEEEEE
T ss_pred eEEeCCCCcEEEeecCCCCcCCCeeEEEEECCC------CCEEEEec-CceeEEe
Confidence 9999998875432210 22456777776643 23555555 5655444
No 339
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=53.23 E-value=3.4 Score=37.40 Aligned_cols=45 Identities=20% Similarity=0.393 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCCCeEEEe--cCCCc-ccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF--NCGHA-THIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF--~CGHa-fH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|...... .++. .|||. |-..|... ... ....||+|...-
T Consensus 8 ~~~C~IC~~~~~~------~~~~~~pCgH~~~C~~C~~~-~~~----~~~~CPiCR~~i 55 (64)
T 2vje_A 8 IEPCVICQGRPKN------GCIVHGKTGHLMACFTCAKK-LKK----RNKPCPVCRQPI 55 (64)
T ss_dssp GSCCTTTSSSCSC------EEEEETTEEEEEECHHHHHH-HHH----TTCCCTTTCCCC
T ss_pred cCCCCcCCCCCCC------EEEECCCCCChhhHHHHHHH-HHH----cCCcCCCcCcch
Confidence 4679999854322 3444 99999 66899842 111 135799998743
No 340
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.98 E-value=3.9 Score=39.70 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=34.9
Q ss_pred CCcccccccccccCCCCCeEEEe--cCCCccccccccccccc----CCCCCCCCCCCcCCCcCccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF--NCGHATHIQCELLENES----SSKSNLSGCPLCMPKKNTQR 1814 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF--~CGHafH~~CL~~en~g----~~~~~~~~CpiC~~~~~~~~ 1814 (1950)
...|.+|++.=..+ ..-++| .|..+||..|+.- -+. +-....|.|+.|....+++.
T Consensus 16 ~~~C~vC~~~~~~~---~~~ll~CD~C~~~yH~~Cl~P-pl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 16 GLACVVCRQMTVAS---GNQLVECQECHNLYHQDCHKP-QVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CCSCSSSCCCCCCT---TCCEEECSSSCCEEETTTSSS-CCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCcCCCCCCCCCCC---CCceEECCCCCCeEcCccCCC-cccccccCCCCCCeeCccccchhhhhc
Confidence 46899999742211 112444 7999999999952 221 11224599999987655543
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.48 E-value=46 Score=45.60 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=55.3
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCCc------cCc---ccceeeeeccc---C-CCCCCCeEEEEEcCCCCEEEEe
Q 000170 448 QVLAVHPSFIAVGMSKGAIVVVPGKYSAHH------RDS---MDSKMMMLGLL---G-DRSPAPVTAMCFNQPGDLLLAG 514 (1950)
Q Consensus 448 t~ia~s~~~IAvGts~G~I~vfd~k~~~~~------~d~---~~~k~~~l~~~---~-~~h~~~VtsLafS~DG~~LasG 514 (1950)
...|+++..++|+..||.++-++...+... .+. +..+.+ +..+ . ......|.+++..+|.++|.+=
T Consensus 175 ~l~av~~~~l~Vsl~dGgLlrl~r~~~~~~~~~~~f~~~s~~~sl~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~lftl 253 (950)
T 4gq2_M 175 LMAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKY-LSLQAFKADYRSPNTIISMIFLSTYNVLVML 253 (950)
T ss_dssp EEEECSSSEEEEEETTSCEEEEEEETTTTEEEEEEECCCCCCCBCC--------CCSSCCCTTCEEEEEEETTTTEEEEE
T ss_pred EEEEEcCCeEEEEECCCCEEEEEecCCCCCcceeeecCCcHHHhhhhh-cccccCCCCCCCcceEEEEeecCCCcEEEEE
Confidence 345667789999999999988764321000 000 000000 0000 0 1122357788888999999999
Q ss_pred cCCCcEEEEECCCCceeeee
Q 000170 515 YADGHVTVWDVQRASAAKVI 534 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl 534 (1950)
+.|+++|+||+.+|+|+.+.
T Consensus 254 ~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 254 SLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp ETTCEEEEEETTTTEEEEEE
T ss_pred ECCCEEEEEECCCCCeEeee
Confidence 99999999999999998775
No 342
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=51.42 E-value=2.9e+02 Score=30.64 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=55.1
Q ss_pred CCCcEEEEEcC--CEEEEE-eCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec-C--C
Q 000170 444 HGSPQVLAVHP--SFIAVG-MSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY-A--D 517 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvG-ts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~-~--d 517 (1950)
...|..+++++ ..|.+. ...+.|.+++... ...+. ... . .......|++++++.+|.... . .
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g-------~~~~~-~~~-~---~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG-------TQRRV-LFD-T---GLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEE-EEC-S---SCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCC-------CCEEE-EEE-C---CCCCccEEEEeeCCCEEEEEECCCCC
Confidence 46799999974 455554 4567899998732 11121 211 1 123568999999766554443 3 4
Q ss_pred CcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 518 GHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 518 G~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
+.|..+++. |+..+.+.......-..++|.++
T Consensus 146 ~~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~ 177 (267)
T 1npe_A 146 PKIETSHMD-GTNRRILAQDNLGLPNGLTFDAF 177 (267)
T ss_dssp CEEEEEETT-SCCCEEEECTTCSCEEEEEEETT
T ss_pred cEEEEEecC-CCCcEEEEECCCCCCcEEEEcCC
Confidence 789888875 44333332122234567788765
No 343
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=50.22 E-value=7.3 Score=39.19 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=37.8
Q ss_pred Cccc-cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1749 HGYA-PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1749 rG~~-p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
.+|. +.-..|.+|++.-.. ...+.--.|..+||..|+. ..+..-....|.|+.|....+.
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~---~~ll~Cd~C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~~c~~g 107 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGED---SKMLVCDTCDKGYHTFCLQ-PVMKSVPTNGWKCKNCRICISG 107 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCC---TTEEECSSSCCEEEGGGSS-SCCSSCCSSCCCCHHHHCCSCS
T ss_pred cCccCCcCCcccccCccCCC---CCeeECCCCCcHHhHHhcC-CccccCCCCCcCCcCCcCcCCC
Confidence 3554 233478888865322 2346666899999999995 2222222346999999875543
No 344
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.86 E-value=16 Score=34.64 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=32.1
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCC-CCCCCCcCC
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSN-LSGCPLCMP 1808 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~-~~~CpiC~~ 1808 (1950)
|.-..-.|.+|++.=... .-+.-=.|..+||..|+. .-+..-... .+.||.|..
T Consensus 22 w~C~~c~C~vC~~~~~~~---~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 22 KKCHSCSCRVCGGKHEPN---MQLLCDECNVAYHIYCLN-PPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCCSSSSCSSSCCCCCST---TEEECSSSCCEEETTSSS-SCCSSCCCSSCCCCTTTCC
T ss_pred eECCCCCCcCcCCcCCCC---CEEEcCCCCccccccccC-CCccCCCCCCCcCCcCccC
Confidence 444445778887632211 223333799999999996 122222222 699999974
No 345
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=48.84 E-value=12 Score=36.94 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=32.0
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
.+| +|++.-... ..|.-=.|.-.||..|+... ... ....|.||.|.+.+.
T Consensus 29 vrC-iC~~~~~~~---~mi~Cd~C~~w~H~~C~~~~-~~~-~p~~w~C~~C~~~~~ 78 (98)
T 2lv9_A 29 TRC-ICGFTHDDG---YMICCDKCSVWQHIDCMGID-RQH-IPDTYLCERCQPRNL 78 (98)
T ss_dssp CCC-TTSCCSCSS---CEEEBTTTCBEEETTTTTCC-TTS-CCSSBCCTTTSSSCC
T ss_pred EEe-ECCCccCCC---cEEEcCCCCCcCcCcCCCCC-ccC-CCCCEECCCCcCCCC
Confidence 556 898765432 22333369999999999642 111 224699999987553
No 346
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=48.43 E-value=32 Score=44.18 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=40.0
Q ss_pred CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccC
Q 000170 462 SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE 537 (1950)
Q Consensus 462 s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~ 537 (1950)
..|.|..||.+.+ + ..|.... ..++.+..+...|.++.+|..||.|+.||..+|+.+-.+..+
T Consensus 442 ~~g~l~a~D~~tG---------~-~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 442 EMGQIRAFDLTTG---------K-AKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCEEEEEECTTTC---------C-EEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCC---------C-EEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 4578999987532 2 1222111 112222233345677888999999999999999998776543
No 347
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=48.14 E-value=11 Score=42.87 Aligned_cols=54 Identities=28% Similarity=0.317 Sum_probs=29.2
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCC-CCCCCCcCC
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSN-LSGCPLCMP 1808 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~-~~~CpiC~~ 1808 (1950)
|.-..-.|.+|++.=.. ..-+.-=.|..+||..|+. .-+..-... .|.||.|..
T Consensus 170 w~C~~c~C~vC~~~~~~---~~lL~CD~C~~~yH~~CL~-PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 170 RLCRVCACHLCGGRQDP---DKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCCTTTSCSSSCCCCC-----CCEECSSSCCEECSCC---CCCCSCCSSSCCCCGGGC-
T ss_pred EecCCCCCcCCCCCCCC---CCeEEcCCCCcceeCccCC-CCcccCCCCCCCCCcCCcC
Confidence 44344568888753111 1123333799999999996 222222222 699999974
No 348
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.51 E-value=4.9 Score=39.02 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCCCeEEEe-cCCCccccccccc--ccc-cCCCCCCCCCCC--cCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF-NCGHATHIQCELL--ENE-SSSKSNLSGCPL--CMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF-~CGHafH~~CL~~--en~-g~~~~~~~~Cpi--C~~~ 1809 (1950)
...|.+|-..+..+ ..+.+ .|||.|...|+.. +.. .........||. |...
T Consensus 5 ~~~C~IC~~~~~~~----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVE----QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGG----GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccc----cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46799998766554 23444 6999999999852 110 000012368999 9764
No 349
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=47.23 E-value=4.5 Score=40.59 Aligned_cols=54 Identities=19% Similarity=0.458 Sum_probs=35.0
Q ss_pred CcccccccccccCCCCCeEEEe--cCCCccccccccccc-----ccCCCCCCCCCCCcCCCcCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVF--NCGHATHIQCELLEN-----ESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF--~CGHafH~~CL~~en-----~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
..|.+|+++..... ..+.- .|.--||..|+.... +.......+.||.|..+.+.
T Consensus 4 ~~C~iC~~p~~~~~---~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 4 YPCGACRSEVNDDQ---DAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CBCTTTCSBCCTTS---CEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred CCCCCCCCccCCCC---CEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 57999999875432 24444 688889999996421 00011145999999875543
No 350
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=47.13 E-value=94 Score=34.77 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=60.9
Q ss_pred cCCCcEEEEEcC--CEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCc
Q 000170 443 DHGSPQVLAVHP--SFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGH 519 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~ 519 (1950)
..+.|..+++++ .+|.+.. ..+.|.+||... .... ... .. ......|++. ++...++...++.
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-------~~~~-~~~--~~---~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-------PGRR-KVL--EG---LQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-------EEEE-EEE--EC---CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-------CceE-EEe--cC---CCCceEEEEe-CCEEEEEECCCCe
Confidence 356789999874 5665544 457899999732 1111 111 11 1234567764 4556666667899
Q ss_pred EEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 520 VTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 520 I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
|..+|..+|+.+.++..+....-..|++.++
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCc
Confidence 9999999999988886443345677788876
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.09 E-value=25 Score=49.07 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=53.2
Q ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCCc-----c-Cc---ccceeeeecccC----CCCCCCeEEEEEcCCCCEEEEec
Q 000170 449 VLAVHPSFIAVGMSKGAIVVVPGKYSAHH-----R-DS---MDSKMMMLGLLG----DRSPAPVTAMCFNQPGDLLLAGY 515 (1950)
Q Consensus 449 ~ia~s~~~IAvGts~G~I~vfd~k~~~~~-----~-d~---~~~k~~~l~~~~----~~h~~~VtsLafS~DG~~LasG~ 515 (1950)
..|+++..++|+..||-++-++...+... . ++ +..+.+ +.... ......|-+++..+|.++|.+=+
T Consensus 178 L~avs~~~lvVsL~DGgLLrL~r~~~d~~~~~~~f~~~s~l~sL~~l-~~~~~~~~~~~~~~~~vs~~~~~~~~~lftL~ 256 (1139)
T 4fhn_B 178 MAAISTSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKY-LSLQAFKADYRSPNTIISMIFLSTYNVLVMLS 256 (1139)
T ss_dssp EEECCSSEEEEEETTSCEEEEEEETTEEEEEEEC----------------------CCCCTTCBSCCEEETTTTEEEEEB
T ss_pred EEEEcCCcEEEEECCCCEEEEEecCCCCCCceeeecCCcHHhhhhhh-cccccCCccCCCcceeEEeeccCCccEEEEEe
Confidence 45667788999999999888754221000 0 00 000000 00000 01123455667778999999999
Q ss_pred CCCcEEEEECCCCceeeeec
Q 000170 516 ADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.|+++|+||+.+|+|+.+..
T Consensus 257 ~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 257 LDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TTCEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEECCCCCeEEeec
Confidence 99999999999999987753
No 352
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.07 E-value=15 Score=35.73 Aligned_cols=49 Identities=18% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|++. + .-+.-=.|--+||..|+. ..+..-....|.|+.|....
T Consensus 25 ~~~C~vC~~~--g----~LL~CD~C~~~fH~~Cl~-PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 25 ATICRVCQKP--G----DLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSCCSSSCSS--S----CCEECTTSSCEECTTSSS-TTCCCCCSSSCCCCSCCCCC
T ss_pred CCcCcCcCCC--C----CEEECCCCCCceecccCC-CCCCCCcCCCcCCccccCCC
Confidence 5789999963 1 112223688899999993 22222223469999998543
No 353
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=44.86 E-value=3.7e+02 Score=31.14 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=60.3
Q ss_pred EEEEEcCCEEEEEe-CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECC
Q 000170 448 QVLAVHPSFIAVGM-SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQ 526 (1950)
Q Consensus 448 t~ia~s~~~IAvGt-s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~ 526 (1950)
+-|.++++.|.++| .+|.|+++|.+.+ .-...+ +. . .----.|++.. ++...+...++.+.+||..
T Consensus 58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tg------kv~~~~-l~--~---~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQGTLRQLSLESA------QPVWME-RL--G---NIFAEGLASDG-ERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEETTEEEEEETTTTEEEECCSSCS------SCSEEE-EC--T---TCCEEEEEECS-SCEEEEESSSCEEEEEETT
T ss_pred ceEEEECCEEEEEcCCCCEEEEEECCCC------cEEeEE-CC--C---CcceeEEEEeC-CEEEEEEccCCEEEEEECC
Confidence 56777776655554 4578999998653 111222 21 1 11112245533 3444556679999999999
Q ss_pred CCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 527 RASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 527 ~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
+++.++++.-+ ..=+.+++.+ . .++.+|-.+.++...-
T Consensus 125 Tl~~~~ti~~~--~eGwGLt~Dg-------~-~L~vSdGs~~l~~iDp 162 (268)
T 3nok_A 125 PPQRERTTRYS--GEGWGLCYWN-------G-KLVRSDGGTMLTFHEP 162 (268)
T ss_dssp TTEEEEEEECS--SCCCCEEEET-------T-EEEEECSSSEEEEECT
T ss_pred cCcEEEEEeCC--CceeEEecCC-------C-EEEEECCCCEEEEEcC
Confidence 99999988632 2224444442 2 3445566766666653
No 354
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.22 E-value=8.8 Score=37.53 Aligned_cols=52 Identities=21% Similarity=0.392 Sum_probs=32.6
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....|.+|++.=... ..+.-=.|..+||..|+.- .+..-....|.||.|...
T Consensus 15 ~~~~C~vC~~~~~~~---~ll~CD~C~~~~H~~Cl~P-pl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDD---KLLFCDGCDDNYHIFCLLP-PLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGG---GCEECTTTCCEECSSSSSS-CCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCC---CEEEcCCCCchhccccCCC-CcccCCCCCcCCccCcCc
Confidence 346899999753211 1233337999999999951 122222246999999754
No 355
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=43.49 E-value=16 Score=32.95 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=30.8
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
+...+|..|++++.... .++-.-|..||..|. .|-.|...-
T Consensus 9 ~~~~~C~~C~~~i~~~e----~~~~~~~~~~H~~CF-------------~C~~C~~~L 49 (72)
T 3f6q_B 9 SASATCERCKGGFAPAE----KIVNSNGELYHEQCF-------------VCAQCFQQF 49 (72)
T ss_dssp CTTCBCTTTCCBCCTTC----EEEEETTEEEETTTS-------------SCTTTCCCC
T ss_pred cCCccchhcCccccCCc----eEEEeCcCeeCcCCC-------------cccCCCCCC
Confidence 34679999999998652 455567889999996 488887543
No 356
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.91 E-value=15 Score=34.06 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=31.4
Q ss_pred cccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCC-CCCCCCCCcCCC
Q 000170 1751 YAPRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSK-SNLSGCPLCMPK 1809 (1950)
Q Consensus 1751 ~~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~-~~~~~CpiC~~~ 1809 (1950)
|.=..=.|.+|++.=... ..+.-=.|..+||..|+. .-+..-. +..+.|+.|..+
T Consensus 14 w~C~~C~C~~C~~~~~~~---~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 14 RLCRVCACHLCGGRQDPD---KQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SCCTTTSBTTTCCCSCGG---GEEECTTTCCEEEGGGSS-SCCSSCCSSSCCCCTTTSCC
T ss_pred eECCCCCCcCCCCcCCCC---CEEEcCCCCCceecccCC-CCcCCCCCCCCcCCcCccCc
Confidence 433333677887642211 122222699999999996 1222222 226999999853
No 357
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.77 E-value=20 Score=32.54 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...+|..|+++|.... .++-.-|..||..|. .|-.|...-
T Consensus 4 ~~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF-------------~C~~C~~~L 43 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDG----AGVVALDRVFHVGCF-------------VCSTCRAQL 43 (72)
T ss_dssp CCCCCSSSCSCCCSSS----CCEECSSSEECTTTC-------------BCSSSCCBC
T ss_pred CCCCCccCCCccCCCc----eEEEECCCeEcccCC-------------cccccCCcC
Confidence 3578999999998632 244556899999996 488887644
No 358
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=42.69 E-value=11 Score=41.52 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=30.6
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|+..= . -+.-=+|-.+||..|+. ..+.......|.|+.|....
T Consensus 2 ~~~C~~C~~~g--~----ll~Cd~C~~~~H~~Cl~-p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPG--D----LVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCS--S----CCCCTTTCCBCCSTTST-TCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCC--c----eeECCCCCchhccccCC-CCcccCCCCCCCCcCccCCC
Confidence 46799998531 1 11222688999999994 12222223469999998653
No 359
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=41.71 E-value=50 Score=43.53 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=55.6
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCC----ccCcc----cceeeeecccCC-CCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 448 QVLAVHPSFIAVGMSKGAIVVVPGKYSAH----HRDSM----DSKMMMLGLLGD-RSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 448 t~ia~s~~~IAvGts~G~I~vfd~k~~~~----~~d~~----~~k~~~l~~~~~-~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
...++++..++|+-.||-++-++...+-+ ..+.. ..+.+ +..... .....|+|+.+ +.++|.+=+.|.
T Consensus 165 ~L~avs~~~liVsL~DGGLLrL~r~~~~d~~~~~Fnd~s~l~SL~~l-f~~~~~~~~~~~Is~~~~--~~~fLftL~~Dh 241 (729)
T 3f7f_A 165 FLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKCLTRF-FSRSSKSDYDSVISCKLF--HERYLIVLTQNC 241 (729)
T ss_dssp EEEECSSSBEEEEETTSCEECCEESSSSCEECCCCCCCGGGGGGSTT-CCTTCSSCCCCEEEEEEE--TTTEEEEEETTC
T ss_pred EEEEECCCeEEEEEcCCCEEEEEeccCCCcceeeecCCchhhhhHHh-hcCCCCCCcCceEEEecc--CCcEEEEEEcCC
Confidence 57788888899999999999887642110 00000 00001 110001 12335777765 688999999999
Q ss_pred cEEEEECCCCceeeeec
Q 000170 519 HVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 519 ~I~lWDl~~g~~l~tl~ 535 (1950)
++|+||+.+++++.+..
T Consensus 242 ~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 242 HLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEEcCCCceEEeec
Confidence 99999999999987764
No 360
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=41.68 E-value=2.4e+02 Score=37.24 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=68.1
Q ss_pred CCCcEEEEEcC-CE-EEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP-SF-IAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~-IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
...+.+++... .. |-+||.+|-|..||.+.+ ..+.+. .....-....|.+|+..++|...++.+ + -+.
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~-------~~~~~~-~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~ 474 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG-------QVENFN-QRNSQLVNENVYAILPDGEGNLWLGTL-S-ALV 474 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTC-------CEEEEC-TTTSCCSCSCEEEEEECSSSCEEEEES-S-CEE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC-------cEEEee-cCCCCcCCCeeEEEEECCCCCEEEEec-C-cee
Confidence 35578888764 44 899999888999987431 111111 001112356799999999999776665 4 488
Q ss_pred EEECCCCceeeeec-----cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 522 VWDVQRASAAKVIT-----GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 522 lWDl~~g~~l~tl~-----~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
.||..+++...... ..+...|.++....+ ..+-+++. .|+..+.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~------g~lWigt~-~Gl~~~~ 523 (795)
T 4a2l_A 475 RFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH------KRLWIGGE-EGLSVFK 523 (795)
T ss_dssp EEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT------CCEEEEES-SCEEEEE
T ss_pred EEeCCCCeEEEccccccccccCCceEEEEEECCC------CCEEEEeC-CceEEEe
Confidence 99998876543221 112356777776654 23445554 5654443
No 361
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=41.58 E-value=19 Score=34.11 Aligned_cols=30 Identities=37% Similarity=0.425 Sum_probs=19.9
Q ss_pred cCCCcccccccccccccCCCCCC-CCCCCcCC
Q 000170 1778 NCGHATHIQCELLENESSSKSNL-SGCPLCMP 1808 (1950)
Q Consensus 1778 ~CGHafH~~CL~~en~g~~~~~~-~~CpiC~~ 1808 (1950)
.|..+||..|+.- -+..-.... +.|+.|..
T Consensus 46 ~C~~~yH~~Cl~P-pL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDP-PLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSS-CCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCC-cccCCCCCCceECcCccc
Confidence 7999999999961 122212224 99999974
No 362
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=40.85 E-value=20 Score=43.03 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 507 PGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 507 DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
++.+|++|+.||.|..||..+|+.+-.+.. .+|.+..+..+ + .+++++..+|.++.+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~-----g-~~~v~~s~dg~l~a~d~ 66 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVE-----E-PAFLPDPNDGSLYTLGS 66 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----------CCEEECTTTCCEEEC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcC-----C-CEEEEeCCCCEEEEEEC
Confidence 688999999999999999999998866652 45555555543 2 24444445565665553
No 363
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.25 E-value=11 Score=34.11 Aligned_cols=51 Identities=25% Similarity=0.448 Sum_probs=29.6
Q ss_pred cCCCcccccccccccCCCCCeEEEec--CC-CcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFN--CG-HATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~--CG-HafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
+...+.++|+++-.+. .|--=. |. ..||..|+... ......+.||.|..+.
T Consensus 8 ~~e~~yC~C~~~~~g~----MI~CD~c~C~~~WfH~~Cvgl~---~~p~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQVSYGE----MIGCDNEQCPIEWFHFSCVSLT---YKPKGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEECCSE----EEECSCTTCSSCEEETGGGTCS---SCCSSCCCCHHHHTCC
T ss_pred CCCCcEEECCCCCCCC----eeeeeCCCCCcccEecccCCcC---cCCCCCEECcCcccCC
Confidence 3344455999863321 111114 55 79999999642 2223469999997643
No 364
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=39.94 E-value=85 Score=40.70 Aligned_cols=100 Identities=5% Similarity=0.012 Sum_probs=56.2
Q ss_pred EEEE-cCCEEEEEeCCC-----------cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEec-
Q 000170 449 VLAV-HPSFIAVGMSKG-----------AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGY- 515 (1950)
Q Consensus 449 ~ia~-s~~~IAvGts~G-----------~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~- 515 (1950)
++.+ ++..+++|..++ .+.+||...+ +-..+. .....+.....++++..||+.++.|+
T Consensus 192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-------~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~ 262 (656)
T 1k3i_A 192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-------IVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGN 262 (656)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-------CBCCCE--EEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC-------cEEeCc--ccCCCCCCccccccCCCCCCEEEeCCC
Confidence 4444 566777776442 5888987532 111110 01112334455678889999999988
Q ss_pred CCCcEEEEECCCCceeeeeccCcCCCeE-EEEEecCCCccCCceEEEEe
Q 000170 516 ADGHVTVWDVQRASAAKVITGEHTSPVV-HTLFLGQDSQVTRQFKAVTG 563 (1950)
Q Consensus 516 ~dG~I~lWDl~~g~~l~tl~~~H~~~I~-~v~F~~d~~~~~~~~~~vss 563 (1950)
.++++.+||..+++-... ...+..+-. .+++.++ +...++++
T Consensus 263 ~~~~v~~yd~~t~~W~~~-~~~~~~R~~~s~~~~~d-----g~iyv~GG 305 (656)
T 1k3i_A 263 DAKKTSLYDSSSDSWIPG-PDMQVARGYQSSATMSD-----GRVFTIGG 305 (656)
T ss_dssp STTCEEEEEGGGTEEEEC-CCCSSCCSSCEEEECTT-----SCEEEECC
T ss_pred CCCceEEecCcCCceeEC-CCCCccccccceEEecC-----CeEEEEeC
Confidence 456899999988764322 122222222 2344444 45667776
No 365
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=39.55 E-value=19 Score=39.57 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=35.1
Q ss_pred CCcccccccccccCC-CCCeEEEecCCCcccccccccccc-cCC-----CCCCCCCCCcCCCcC
Q 000170 1755 SLLCCICNCLLTKNS-SSFQIRVFNCGHATHIQCELLENE-SSS-----KSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~-~~~~ivVF~CGHafH~~CL~~en~-g~~-----~~~~~~CpiC~~~~~ 1811 (1950)
+..|.+|+++...+. ....|--=.|..-||..|...... ... ....+.||.|..+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 467999999876542 112233336888899999864210 000 002599999987653
No 366
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=39.41 E-value=2e+02 Score=37.86 Aligned_cols=112 Identities=10% Similarity=0.023 Sum_probs=68.4
Q ss_pred CCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 444 HGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
...+.+++..+ ..|-+||.+|-|..||.+.+ ...............|.+|+..++|...+ |..+|-|..
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~ 431 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKR---------VAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISY 431 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEE---------EEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEE
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCC---------eEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEE
Confidence 45578898875 56889997777888986321 10111101112356799999998998666 555566899
Q ss_pred EECCCCceeeeec-cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEE
Q 000170 523 WDVQRASAAKVIT-GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLH 572 (1950)
Q Consensus 523 WDl~~g~~l~tl~-~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h 572 (1950)
||..+++..+... ......|.++....+ ..+.++.. .|+..+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~------g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 432 YNTRLKKFQIIELEKNELLDVRVFYEDKN------KKIWIGTH-AGVFVID 475 (781)
T ss_dssp ECSSSCEEEECCSTTTCCCCEEEEEECTT------SEEEEEET-TEEEEEE
T ss_pred EcCCCCcEEEeccCCCCCCeEEEEEECCC------CCEEEEEC-CceEEEe
Confidence 9998876533221 123456777776643 24555555 5655544
No 367
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.12 E-value=24 Score=32.17 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|.... ..-++-.-|..||..|. .|-.|...-
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~~~a~~~~wH~~CF-------------~C~~C~~~L 45 (72)
T 1x4l_A 5 SSGCAGCTNPISGLG--GTKYISFEERQWHNDCF-------------NCKKCSLSL 45 (72)
T ss_dssp SCSBTTTTBCCCCSS--SCSCEECSSCEECTTTC-------------BCSSSCCBC
T ss_pred CCCCcCCCccccCCC--CcceEEECCcccCcccC-------------EeccCCCcC
Confidence 568999999998610 01234457899999996 477776543
No 368
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.04 E-value=26 Score=33.46 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|... +|-.-|..||..|. .|-.|...-
T Consensus 25 ~~~C~~C~~~I~~~------~v~a~~~~~H~~CF-------------~C~~C~~~L 61 (90)
T 2dar_A 25 TPMCAHCNQVIRGP------FLVALGKSWHPEEF-------------NCAHCKNTM 61 (90)
T ss_dssp CCBBSSSCCBCCSC------EEEETTEEECTTTC-------------BCSSSCCBC
T ss_pred CCCCccCCCEecce------EEEECCccccccCC-------------ccCCCCCCC
Confidence 57899999999643 33457999999996 477787543
No 369
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=38.82 E-value=2.2e+02 Score=33.20 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccC---cCCCeEEEEEecC
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGE---HTSPVVHTLFLGQ 550 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~---H~~~I~~v~F~~d 550 (1950)
....+.+|+++++|+.++++. +|.|.+++...|+--..+... +...+..|.|.++
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~ 260 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP 260 (327)
T ss_dssp SSSCEEEEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS
T ss_pred CCCccceeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC
Confidence 346799999999998776664 788888753334432222212 2346888998864
No 370
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=38.56 E-value=1.4e+02 Score=34.29 Aligned_cols=74 Identities=4% Similarity=0.079 Sum_probs=50.3
Q ss_pred CCCCCCCeEEEEEcCCCC-EEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEE
Q 000170 492 GDRSPAPVTAMCFNQPGD-LLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQ 570 (1950)
Q Consensus 492 ~~~h~~~VtsLafS~DG~-~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~ 570 (1950)
.++..+.++.|+|+||+. +.|+...++.|...|+. |+.++++.-+=..-.-.|++.++ + ..+|+.+..+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~-----g-~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD-----N-QFVISDERDYAIY 94 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST-----T-EEEEEETTTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC-----C-EEEEEECCCCcEE
Confidence 344556799999999765 55568889999999998 98888874211134566777765 3 3556655555544
Q ss_pred EE
Q 000170 571 LH 572 (1950)
Q Consensus 571 ~h 572 (1950)
..
T Consensus 95 ~~ 96 (255)
T 3qqz_A 95 VI 96 (255)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 371
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=38.47 E-value=12 Score=33.54 Aligned_cols=49 Identities=22% Similarity=0.427 Sum_probs=29.1
Q ss_pred CCCcccccccccccCCCCCeEEEec--CC-CcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFN--CG-HATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~--CG-HafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....+++|+++-.+. .|--=. |. ..||..|+... ......+.||.|..+
T Consensus 7 ~e~~yC~C~~~~~g~----mi~CD~~~C~~~wfH~~Cvgl~---~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 7 NEPTYCLCHQVSYGE----MIGCDNPDCPIEWFHFACVDLT---TKPKGKWFCPRCVQE 58 (59)
T ss_dssp -CCEETTTTEECCSE----EEECSCTTCSSCEEETGGGTCS---SCCSSCCCCHHHHCC
T ss_pred CCCcEEECCCCCCCC----eeEeeCCCCCCCCEecccCCcc---cCCCCCEECcCccCc
Confidence 344455999864321 111124 66 69999999642 222246999999753
No 372
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.20 E-value=22 Score=32.24 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|.... .++-.-|..||..|. .|..|...-
T Consensus 5 ~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF-------------~C~~C~~~L 43 (72)
T 1wyh_A 5 SSGCSACGETVMPGS----RKLEYGGQTWHEHCF-------------LCSGCEQPL 43 (72)
T ss_dssp CCBCSSSCCBCCSSS----CEECSTTCCEETTTC-------------BCTTTCCBT
T ss_pred CCCCccCCCccccCc----cEEEECccccCcccC-------------eECCCCCcC
Confidence 568999999998532 345567999999996 477786543
No 373
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=37.80 E-value=2.2e+02 Score=32.62 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCCcEEEEEcCCEEEE-EeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 444 HGSPQVLAVHPSFIAV-GMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 444 ~G~pt~ia~s~~~IAv-Gts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
...|..|.+++.+|.+ -+.++.|.+||.... ......... . .. .....|++++||...++-..++.|..
T Consensus 168 ~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~----g~~~~~~~~-~-~~----~~P~gi~vd~dG~l~va~~~~~~V~~ 237 (306)
T 2p4o_A 168 FPAANGLKRFGNFLYVSNTEKMLLLRIPVDST----DKPGEPEIF-V-EQ----TNIDDFAFDVEGNLYGATHIYNSVVR 237 (306)
T ss_dssp SCSEEEEEEETTEEEEEETTTTEEEEEEBCTT----SCBCCCEEE-E-ES----CCCSSEEEBTTCCEEEECBTTCCEEE
T ss_pred CCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCC----CCCCccEEE-e-cc----CCCCCeEECCCCCEEEEeCCCCeEEE
Confidence 3456777777766555 456788999997420 000001111 1 11 23566899999999999888999999
Q ss_pred EECCCCceee--eeccCcCCCeEEEEEec
Q 000170 523 WDVQRASAAK--VITGEHTSPVVHTLFLG 549 (1950)
Q Consensus 523 WDl~~g~~l~--tl~~~H~~~I~~v~F~~ 549 (1950)
||.. |+... .+. ......++++|.+
T Consensus 238 ~~~~-G~~~~~~~~~-~~~~~p~~~a~~g 264 (306)
T 2p4o_A 238 IAPD-RSTTIIAQAE-QGVIGSTAVAFGQ 264 (306)
T ss_dssp ECTT-CCEEEEECGG-GTCTTEEEEEECC
T ss_pred ECCC-CCEEEEeecc-cccCCceEEEEec
Confidence 9975 66532 222 1225688999983
No 374
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.58 E-value=20 Score=33.43 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
....+|..|+++|... ++-.-|..||..|. .|-.|...
T Consensus 13 ~~~~~C~~C~~~I~~~------~~~a~~~~~H~~CF-------------~C~~C~~~ 50 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV------FVKLRDRHRHPECY-------------VCTDCGTN 50 (79)
T ss_dssp CCCCCCSSSCCCCCSS------CEECSSCEECTTTT-------------SCSSSCCC
T ss_pred CCCCccccCCCCccCc------EEEECcceeCcCcC-------------eeCCCCCC
Confidence 3457999999999863 34567899999996 47778754
No 375
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.26 E-value=19 Score=34.09 Aligned_cols=52 Identities=25% Similarity=0.462 Sum_probs=32.4
Q ss_pred CcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..| +|+++-... ...|--=.|..-||..|+............+.|+.|..+.
T Consensus 13 ~~C-~C~~~~d~~--~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVN--HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSS--SCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCC--CceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 445 999876422 1234444688889999996422111112469999999765
No 376
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.13 E-value=12 Score=33.52 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=28.6
Q ss_pred cCCCcccccccccccCCCCCeEEEe--c--CC-CcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVF--N--CG-HATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF--~--CG-HafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
+....+++|+++-.+ ..|. . |. ..||..|+... ......+.||.|..+
T Consensus 7 ~~e~~~C~C~~~~~g------~mi~CD~cdC~~~wfH~~Cvgl~---~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 7 PNEPTYCLCHQVSYG------EMIGCDNPDCSIEWFHFACVGLT---TKPRGKWFCPRCSQE 59 (60)
T ss_dssp --CCEETTTTEECCS------EEEECSCTTCSSCEEETGGGTCS---SCCSSCCCCHHHHC-
T ss_pred CCCCCEEECCCcCCC------CEEEeCCCCCCCceEehhcCCCC---cCCCCCEECcCccCc
Confidence 444455599986432 2232 4 65 68999999642 222246999999753
No 377
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.18 E-value=31 Score=32.85 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=29.3
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
....+|..|+++|... ++..-|..||..|. .|-.|...-
T Consensus 23 ~~~~~C~~C~~~I~~~------~~~a~~~~~H~~CF-------------~C~~C~~~L 61 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA------VVKARDKYRHPECF-------------VCADCNLNL 61 (89)
T ss_dssp CSCCBCTTTCCBCCSC------CEESSSCEECTTTC-------------CCSSSCCCT
T ss_pred CcCCCcccCCCEeccc------EEEECCceECccCC-------------EecCCCCCC
Confidence 3457899999999863 24567899999996 477787543
No 378
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=35.99 E-value=2.4e+02 Score=32.86 Aligned_cols=55 Identities=7% Similarity=0.110 Sum_probs=36.6
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecC
Q 000170 495 SPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQ 550 (1950)
Q Consensus 495 h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d 550 (1950)
..+.+.+++|++++.++++|...+-.+-+|- .|+.-..+...+...+..+++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPD 215 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTT
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCC
Confidence 4567999999999999988875444444553 122222232355678899998865
No 379
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.90 E-value=17 Score=37.27 Aligned_cols=38 Identities=16% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|... .++-..|..||..|. .|-.|...-
T Consensus 61 ~~~C~~C~~~I~~~-----~~v~a~~~~wH~~CF-------------~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADR-----FLLYAMDSYWHSRCL-------------KCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSS-----SEEEETTEEEETTTS-------------BCTTTCCBG
T ss_pred CCcCcCCCCCcCCc-----EEEEeCCcEEccccc-------------CcCcCCCcc
Confidence 47899999999864 245567999999996 488887543
No 380
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=35.45 E-value=3.4e+02 Score=32.49 Aligned_cols=80 Identities=14% Similarity=0.006 Sum_probs=51.3
Q ss_pred CCCcEEEEEcC--CEEEEEeCC-CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSK-GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHV 520 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~-G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I 520 (1950)
++.+.-+++.+ +.-++|+.. +.|..++-. ......+.+..+......-.+-|++.|||.+|++....|.+
T Consensus 136 ~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-------G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 136 PFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-------GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp CEEEEEEEECTTSCEEEEEEESSCEEEEECTT-------SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred ccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-------CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 34566677774 555567777 888888752 12112122211111122336789999999999999889999
Q ss_pred EEEECCCCce
Q 000170 521 TVWDVQRASA 530 (1950)
Q Consensus 521 ~lWDl~~g~~ 530 (1950)
.-+|+.+...
T Consensus 209 ~~fD~~~pv~ 218 (334)
T 2p9w_A 209 TAFDVSKPYA 218 (334)
T ss_dssp EEEECSSSSC
T ss_pred EEEcCCCCcc
Confidence 9999986543
No 381
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.91 E-value=28 Score=31.58 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|..|+++|.... .++-.-|..||..|. .|-.|...
T Consensus 5 ~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF-------------~C~~C~~~ 42 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT----RKMEYKGSSWHETCF-------------ICHRCQQP 42 (72)
T ss_dssp CCCBSSSCCCCCSSS----CEEEETTEEEETTTT-------------CCSSSCCC
T ss_pred CCCCccCCCcccCCc----eEEEECcCeecccCC-------------cccccCCc
Confidence 568999999998642 244456899999996 47778653
No 382
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=34.20 E-value=72 Score=38.46 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=40.8
Q ss_pred eeEEEEEcCeeEEEEeeecceeEeeEEeccccceeeeeccCCeEEEEeecC
Q 000170 720 SLLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQMLVVLTLLG 770 (1950)
Q Consensus 720 ~~LA~aWgn~l~vl~~~k~~~~~~~~~~~~~~I~~l~WLs~~iL~vLt~s~ 770 (1950)
.++|+.=|+.||++.+. .-...+...++++|+.-.|+++++|+++|.+.
T Consensus 79 ~ViALrag~~LQiFnle--tK~klks~~~~e~VvfWkWis~~~L~lVT~ta 127 (365)
T 2xzh_A 79 KVIALKAGKTLQIFNIE--MKSKMKAHTMTDDVTFWKWISLNTVALVTDNA 127 (365)
T ss_dssp SEEEEEETTEEEEEETT--TTEEEEEEECSSCEEEEEECSSSEEEEEESSE
T ss_pred cEEEEecCCeEEEechH--HhhhhcceecCCccEEEEecCCCeEEEEcCCc
Confidence 47888889999999862 12456778889999999999999999999875
No 383
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=34.02 E-value=1.2e+02 Score=35.24 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCCEEEEecCCC--cEEEEECCCCceeeeec
Q 000170 497 APVTAMCFNQPGDLLLAGYADG--HVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~~dG--~I~lWDl~~g~~l~tl~ 535 (1950)
.-..-|.|+ ||+...+++.+| .|+.+|+.+|+.++.+.
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~ 82 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE 82 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe
Confidence 346778998 788888888877 89999999999988775
No 384
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.98 E-value=16 Score=37.08 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=35.6
Q ss_pred Cccc-cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1749 HGYA-PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1749 rG~~-p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
.+|. +.-..|.+|++.-... .-+.--.|..+||..|+. ..+..-....|.|+.|...
T Consensus 51 ~~W~C~~C~~C~~C~~~~~~~---~ll~Cd~C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 51 YKWQCIECKSCILCGTSENDD---QLLFCDDCDRGYHMYCLN-PPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp TTCCCGGGCCCTTTTCCTTTT---TEEECSSSCCEEETTTSS-SCCSSCCSSCCCCHHHHHH
T ss_pred CccCccccCccCcccccCCCC---ceEEcCCCCccccccccC-CCccCCCCCCeECccccch
Confidence 3575 3335788898753222 234445899999999996 2222222246999999653
No 385
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=33.98 E-value=3.8e+02 Score=32.73 Aligned_cols=112 Identities=8% Similarity=0.084 Sum_probs=63.3
Q ss_pred cCCCcEEEEEcC--CEEEEEeC-CC----cEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcC-CCCEEEEe
Q 000170 443 DHGSPQVLAVHP--SFIAVGMS-KG----AIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQ-PGDLLLAG 514 (1950)
Q Consensus 443 ~~G~pt~ia~s~--~~IAvGts-~G----~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~-DG~~LasG 514 (1950)
....|..|++++ ++|.+... .| .|.+++.... ..... .+. . ......++++| +|..+++-
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~------~~~~~-~l~-~----~~~p~giavdp~~g~lyv~d 244 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG------FKVIT-ELT-K----GQNCNGAETHPINGELYFNS 244 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT------SCSEE-EEE-E----CSSCCCEEECTTTCCEEEEE
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc------eeeee-eec-c----CCCceEEEEeCCCCEEEEEE
Confidence 456789999885 54555543 22 3444543110 00001 111 1 23356788999 78888888
Q ss_pred cCCCcEEEEECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 515 YADGHVTVWDVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 515 ~~dG~I~lWDl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
..++.|..||..++........+-...-.+++|.++ ++.+.++--..+.|+.
T Consensus 245 ~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pd-----G~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 245 WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPS-----GNYAYIVVVNQHYILR 296 (430)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTT-----SSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCC-----CCEEEEEECCCCEEEE
Confidence 889999999998776522222112234568999986 3444444334444444
No 386
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.78 E-value=27 Score=32.18 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCccccccccccc--CCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTK--NSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~--~~~~~~ivVF~CGHafH~~CL 1788 (1950)
..+|..|+++|.. .. -++-.-|..||..|.
T Consensus 5 ~~~C~~C~~~I~~~g~~----~~~~a~~~~wH~~CF 36 (76)
T 1x68_A 5 SSGCVACSKPISGLTGA----KFICFQDSQWHSECF 36 (76)
T ss_dssp CCCCTTTCCCCCTTTTC----CEEEETTEEEEGGGC
T ss_pred CCCCccCCCcccCCCCc----eeEEECCcccCcccC
Confidence 4689999999986 21 234456899999996
No 387
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=33.65 E-value=28 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=28.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|... +|-.-|..||..|. .|..|...-
T Consensus 5 ~~~C~~C~~~I~~~------~~~a~~~~~H~~CF-------------~C~~C~~~L 41 (66)
T 1nyp_A 5 VPICGACRRPIEGR------VVNAMGKQWHVEHF-------------VCAKCEKPF 41 (66)
T ss_dssp CCEETTTTEECCSC------EECCTTSBEETTTC-------------BCTTTCCBC
T ss_pred CCCCcccCCEecce------EEEECccccccCcC-------------EECCCCCCC
Confidence 46899999999832 35567899999996 488887543
No 388
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.62 E-value=28 Score=32.02 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=29.4
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
.....+|..|+++|.... . |-.-|..||..|. .|..|...-
T Consensus 6 ~~~~~~C~~C~~~I~~~~----~-v~a~~~~~H~~CF-------------~C~~C~~~L 46 (76)
T 2cu8_A 6 SGMASKCPKCDKTVYFAE----K-VSSLGKDWHKFCL-------------KCERCSKTL 46 (76)
T ss_dssp CCCCCBCTTTCCBCCTTT----E-EEETTEEEETTTC-------------BCSSSCCBC
T ss_pred CCCCCCCcCCCCEeECCe----E-EEECCeEeeCCCC-------------CCCCCCCcc
Confidence 334678999999998542 3 3356899999996 477776543
No 389
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.54 E-value=31 Score=31.02 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|... . |-.-|..||..|. .|..|...-
T Consensus 5 ~~~C~~C~~~I~~~-----~-~~a~~~~~H~~CF-------------~C~~C~~~L 41 (69)
T 2cur_A 5 SSGCVKCNKAITSG-----G-ITYQDQPWHADCF-------------VCVTCSKKL 41 (69)
T ss_dssp CCCCSSSCCCCCTT-----C-EEETTEEECTTTT-------------BCTTTCCBC
T ss_pred cCCCcccCCEeCcc-----e-EEECccccccCcC-------------EECCCCCCC
Confidence 57899999999753 2 2345899999996 477787543
No 390
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=33.12 E-value=89 Score=40.81 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCC---EEEEecCCCcEEEEECCCCceeeeec
Q 000170 497 APVTAMCFNQPGD---LLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 497 ~~VtsLafS~DG~---~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
+++....+..||+ .|++|..+|.+.++|..+|+.+..+.
T Consensus 300 ~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 4555555556887 79999999999999999999875553
No 391
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=32.68 E-value=3.4e+02 Score=35.65 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=68.0
Q ss_pred CCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEE
Q 000170 444 HGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTV 522 (1950)
Q Consensus 444 ~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~l 522 (1950)
...+.+++... ..|-+||..|-|..||.+.+ +..... ........|.+|+..++|...++.. +-|..
T Consensus 406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---------~~~~~~-~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~ 473 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---------KFQIIE-LEKNELLDVRVFYEDKNKKIWIGTH--AGVFV 473 (781)
T ss_dssp CSBEEEEEECTTSCEEEEETTEEEEEECSSSC---------EEEECC-STTTCCCCEEEEEECTTSEEEEEET--TEEEE
T ss_pred CcceEEEEECCCCCEEEEeccCCEEEEcCCCC---------cEEEec-cCCCCCCeEEEEEECCCCCEEEEEC--CceEE
Confidence 35578888863 56788998777889986421 111111 1012356899999999998666655 45899
Q ss_pred EECCCCceeeeeccC----cCCCeEEEEEecCCCccCCceEEEEecCCceEEE
Q 000170 523 WDVQRASAAKVITGE----HTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQL 571 (1950)
Q Consensus 523 WDl~~g~~l~tl~~~----H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~ 571 (1950)
||..+++........ ....|.++....+ ..+-++....|+..+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~------g~lWigt~~~Gl~~~ 520 (781)
T 3v9f_A 474 IDLASKKVIHHYDTSNSQLLENFVRSIAQDSE------GRFWIGTFGGGVGIY 520 (781)
T ss_dssp EESSSSSCCEEECTTTSSCSCSCEEEEEECTT------CCEEEEESSSCEEEE
T ss_pred EeCCCCeEEecccCcccccccceeEEEEEcCC------CCEEEEEcCCCEEEE
Confidence 999887654332111 1356777776643 245566655665444
No 392
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.53 E-value=9.9 Score=35.43 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=33.6
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
......|.+|++.=.... +.-+.-=.|.-+||..|+.... -....|.|+.|..+
T Consensus 13 ~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCc---CCCCCcCCccCcCc
Confidence 345789999987431111 1122222799999999996422 12246999999753
No 393
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.11 E-value=19 Score=33.10 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=29.1
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
.....|..|++++.... .++-.-|..||..|. .|-.|...
T Consensus 9 ~~~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF-------------~C~~C~~~ 48 (77)
T 1g47_A 9 LASATCERCKGGFAPAE----KIVNSNGELYHEQCF-------------VCAQCFQQ 48 (77)
T ss_dssp CCCCBCSSSCCBCCSTT----TCEEETTEEECTTTC-------------CCTTTCCC
T ss_pred CCCCCchhcCCccCCCc----eEEEeCccEeccccC-------------eECCCCCC
Confidence 44689999999997532 234456889999996 47778654
No 394
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.10 E-value=43 Score=30.13 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=27.4
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|..|+++|... . +-.-|..||..|. .|..|...
T Consensus 5 ~~~C~~C~~~I~~~-----~-~~a~~~~~H~~CF-------------~C~~C~~~ 40 (70)
T 2d8z_A 5 SSGCVQCKKPITTG-----G-VTYREQPWHKECF-------------VCTACRKQ 40 (70)
T ss_dssp CCBCSSSCCBCCSS-----E-EESSSSEEETTTS-------------BCSSSCCB
T ss_pred CCCCcccCCeeccc-----e-EEECccccCCCCC-------------ccCCCCCc
Confidence 46899999999753 2 4557899999996 47777654
No 395
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.27 E-value=31 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|..|+++|... ++-.-|..||..|. .|-.|...
T Consensus 5 ~~~C~~C~~~I~~~------~~~a~~~~~H~~CF-------------~C~~C~~~ 40 (70)
T 2d8x_A 5 SSGCHQCGEFIIGR------VIKAMNNSWHPECF-------------RCDLCQEV 40 (70)
T ss_dssp SSBCSSSCCBCCSC------CEEETTEEECTTTS-------------BCSSSCCB
T ss_pred CCcCccCCCEecce------EEEECcccccccCC-------------EeCCCCCc
Confidence 56899999999843 24456899999996 47777653
No 396
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=31.17 E-value=14 Score=28.71 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
+..|..|++.+.... .+..=|..||..|.
T Consensus 3 ~~~C~~C~k~Vy~~E-----k~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTE-----KVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGG-----CCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecce-----eEEECCeEecccCC
Confidence 468999999887542 12345899999994
No 397
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.92 E-value=14 Score=37.81 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhcccchhhHHhhcccCCchhHHHHHHH
Q 000170 991 LPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLHGALVYLFNKGLDDFRAPLEELLV 1062 (1950)
Q Consensus 991 lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~LydaLIYI~n~~l~DYvTPL~eLl~ 1062 (1950)
=.+++..+|+.||.+.|+.+.+-.|+..- ..-|.+|.|+.+.|.|+|-|-.+=-..+.+.+|.+-+.+|-.
T Consensus 46 ~d~elaEeLL~yFVe~g~kEcF~A~LytC-YdLlrpDvVLElaWr~~l~Df~mPY~Iqv~re~~~kv~~L~~ 116 (125)
T 3qil_A 46 KDTELAEELLQWFLQEEKRECFGACLFTC-YDLLRPDVVLELAWRHNIMDFAMPYFIQVMKEYLTKVDKLDA 116 (125)
T ss_dssp CCSHHHHHHHHHHTTSCSHHHHHHHHHHH-TTCSCTTHHHHTTSSSSCCCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHHHH-HhccChHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998887776542 344678999999999887663222223334555555555443
No 398
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=30.00 E-value=2.8e+02 Score=33.87 Aligned_cols=74 Identities=8% Similarity=0.114 Sum_probs=44.9
Q ss_pred cCCCcEEEEEcC---CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCE-EEEecCCC
Q 000170 443 DHGSPQVLAVHP---SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDL-LLAGYADG 518 (1950)
Q Consensus 443 ~~G~pt~ia~s~---~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~-LasG~~dG 518 (1950)
.+..|+.+++++ ..|.+....+.|+.||... .... .+. . .......|+|+++|.+ +++.+.+|
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-------~~v~--~~~-~---~~~~P~~ia~d~~G~~lyvad~~~~ 201 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-------EYVS--TVY-S---GLSKVRTICWTHEADSMIITNDQNN 201 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTT-------TEEE--EEE-C---CCSCEEEEEECTTSSEEEEEECCSC
T ss_pred CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCC-------CEEE--EEe-c---CCCCcceEEEeCCCCEEEEEeCCCC
Confidence 466899999984 4566665558899999742 1111 211 1 2356889999999994 44544333
Q ss_pred c---EEEEECCCCc
Q 000170 519 H---VTVWDVQRAS 529 (1950)
Q Consensus 519 ~---I~lWDl~~g~ 529 (1950)
. ..+|-...+.
T Consensus 202 ~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 202 NDRPNNYILTRESG 215 (430)
T ss_dssp TTSEEEEEEEGGGT
T ss_pred cccceEEEEeCCCc
Confidence 2 3444444444
No 399
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=29.96 E-value=69 Score=41.86 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=41.4
Q ss_pred CCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEEECCCCceeeeec
Q 000170 462 SKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVWDVQRASAAKVIT 535 (1950)
Q Consensus 462 s~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lWDl~~g~~l~tl~ 535 (1950)
.+|.|..||.+.+ + +.|.... ..++....+...|.+|.+|..||.++.||..+|+.+..+.
T Consensus 436 ~~g~l~A~D~~tG---------~-~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 436 VSGALLAWDPVKQ---------K-AAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CEEEEEEEETTTT---------E-EEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccceEEEEeCCCC---------c-EEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 4588999997542 2 2232111 1223333445578899999999999999999999887664
No 400
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=29.92 E-value=44 Score=33.63 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=32.0
Q ss_pred CccccCCCcccccccccccCCCCCeEEEe---cCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1749 HGYAPRSLLCCICNCLLTKNSSSFQIRVF---NCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1749 rG~~p~s~~C~iC~k~L~~~~~~~~ivVF---~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
.+-......|.+|+. + ..++.= .|-.+||..|+.+ .......|.||.|.
T Consensus 9 ~~~~~~~~~C~~C~~---~----G~ll~CD~~~Cp~~fH~~Cl~L---~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 9 EPKQMHEDYCFQCGD---G----GELVMCDKKDCPKAYHLLCLNL---TQPPYGKWECPWHQ 60 (107)
T ss_dssp -CCCSSCSSCTTTCC---C----SEEEECCSTTCCCEECTGGGTC---SSCCSSCCCCGGGB
T ss_pred CCcCCCCCCCCcCCC---C----CcEeEECCCCCCcccccccCcC---CcCCCCCEECCCCC
Confidence 344456789999983 1 235555 3889999999963 22223458999775
No 401
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.75 E-value=48 Score=31.65 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=23.6
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
....|..|+++|.... . |-.-|..||..|.
T Consensus 14 ~~~~C~~C~~~I~~~~----~-v~a~~~~~H~~CF 43 (91)
T 2d8y_A 14 ARETCVECQKTVYPME----R-LLANQQVFHISCF 43 (91)
T ss_dssp SSCBCTTTCCBCCTTS----E-EECSSSEEETTTC
T ss_pred CCCcCccCCCccCCce----e-EEECCCEECCCCC
Confidence 4679999999998642 3 3567899999996
No 402
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=29.66 E-value=3.6e+02 Score=30.84 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred CCCcEEEEEcC--CEEEEE-eCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecC----
Q 000170 444 HGSPQVLAVHP--SFIAVG-MSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYA---- 516 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvG-ts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~---- 516 (1950)
...|..|++++ ++|.++ +.++.|.+|+..... . ...+ .. . . ..+ ...|++.++|.+.++...
T Consensus 184 ~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~---~-~~~~-~~-~-~---~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 184 LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK---K-GTAE-VL-V-K---IPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT---T-TCEE-EE-E-E---CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc---C-Cccc-eE-E-e---CCC-CCCeEECCCCCEEEEecCcccc
Confidence 34567777775 566666 566899999974210 0 0111 11 1 1 123 778999999997777665
Q ss_pred ------CCcEEEEECCCCceeeeeccCc---CCCeEEEEE
Q 000170 517 ------DGHVTVWDVQRASAAKVITGEH---TSPVVHTLF 547 (1950)
Q Consensus 517 ------dG~I~lWDl~~g~~l~tl~~~H---~~~I~~v~F 547 (1950)
.+.|..+|. .|+.+..+.... -..++.+++
T Consensus 253 ~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp STTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred cccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence 577899987 477766664222 234555555
No 403
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=29.27 E-value=25 Score=32.78 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=22.0
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
....+|..|+++|.... + +-.-|..||..|.
T Consensus 5 ~~~~~C~~C~~~I~~~~----~-~~a~~~~~H~~CF 35 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAE----E-VQCDGRSFHRCCF 35 (81)
T ss_dssp ---CBCSSSCCBCSSTT----E-EEETTEEEESSSE
T ss_pred CCCCcCcCcCccccCce----e-EEeCCcccccccC
Confidence 34678999999997542 2 3457899999996
No 404
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=28.80 E-value=25 Score=32.40 Aligned_cols=49 Identities=16% Similarity=0.390 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...| +|+++-.+. ..|--=.|..-||..|+..... .....+.|+.|.++
T Consensus 19 ~~~C-iC~~~~~~~---~MIqCd~C~~WfH~~Cvgi~~~--~~~~~~~C~~C~~s 67 (68)
T 3o70_A 19 LVTC-FCMKPFAGR---PMIECNECHTWIHLSCAKIRKS--NVPEVFVCQKCRDS 67 (68)
T ss_dssp CCCS-TTCCCCTTC---CEEECTTTCCEEETTTTTCCTT--SCCSSCCCHHHHTC
T ss_pred ceEe-ECCCcCCCC---CEEECCCCCccccccccCcCcc--cCCCcEECCCCCCC
Confidence 4566 999876532 2344446888999999964221 12356999999764
No 405
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.13 E-value=47 Score=30.89 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|.... .+|-.-|..||..|. .|-.|...-
T Consensus 15 ~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF-------------~C~~C~~~L 53 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD----QNVEYKGTVWHKDCF-------------TCSNCKQVI 53 (82)
T ss_dssp SCBCSSSCCBCCSSS----CEEECSSCEEETTTC-------------CCSSSCCCC
T ss_pred CCcCccCCcccccCc----eEEEECccccccccC-------------chhhCCCcc
Confidence 568999999997532 234556899999996 477786543
No 406
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.12 E-value=18 Score=33.62 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=32.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
...| +|+++-... ...|--=.|..-||..|+...... .....+.|+.|.++..
T Consensus 16 ~~~C-~C~~~~~~g--~~mI~Cd~C~~W~H~~Cvg~~~~~-~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 16 KVDC-KCGTKDDDG--ERMLACDGCGVWHHTRCIGINNAD-ALPSKFLCFRCIELSG 68 (72)
T ss_dssp EECC-TTCCCSCCS--SCEEECSSSCEEEETTTTTCCTTS-CCCSCCCCHHHHHHCS
T ss_pred ceEe-eCCCccCCC--CcEEECCCCCCccCCeeeccCccc-cCCCcEECCCccCCCC
Confidence 4568 799875321 123333368888999999643211 1235699999986543
No 407
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=27.77 E-value=2e+02 Score=27.75 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHHHHhccc
Q 000170 975 FLELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLH 1039 (1950)
Q Consensus 975 Fle~LEp~IL~g~I~~lPP~I~q~lv~~y~~~g~l~~lE~~Il~LD~~sLDidqvi~LC~e~~Ly 1039 (1950)
.++.+.|++-+-.|..|.+..++++++.+.+......+.+++.. +.++++.|.+.|+.
T Consensus 35 ~~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~-------l~~i~~~Av~~g~i 92 (112)
T 3lys_A 35 TLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTR-------VRASIQCLIEEGRL 92 (112)
T ss_dssp HHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHH-------HHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCCHHhCCHHHHHHHHHHHHHhccHHHHHHHHHH-------HHHHHHHHHHCCCc
Confidence 34578888866678899999999999998776667777777654 56777777777764
No 408
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=27.69 E-value=43 Score=33.48 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=30.7
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
....|.+|+..=... .-+.=-.|+.+||..|+..... ......|.|+.|.
T Consensus 6 ~~~~C~~C~~~g~~~---~ll~C~~C~~~~H~~Cl~~~~~-~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLL---DQFFCTTCGQHYHGMCLDIAVT-PLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTT---TSEECSSSCCEECTTTTTCCCC-TTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCc---CCeECCCCCCCcChHHhCCccc-cccccCccCCcCC
Confidence 467899998752211 1244458999999999964221 1112357777764
No 409
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.60 E-value=27 Score=32.10 Aligned_cols=28 Identities=21% Similarity=0.265 Sum_probs=21.8
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
...|..|+++|... +|-.-|..||..|.
T Consensus 5 ~~~C~~C~~~I~~~------~v~a~~~~wH~~CF 32 (73)
T 1wig_A 5 SSGCDSCEKYITGR------VLEAGEKHYHPSCA 32 (73)
T ss_dssp CCSCSSSCCCCSSC------CBCCSSCCBCTTTS
T ss_pred cCCcccCCCEecCe------eEEeCCCCCCCCcC
Confidence 46899999999863 23466889999886
No 410
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=27.42 E-value=7.3e+02 Score=28.20 Aligned_cols=106 Identities=6% Similarity=-0.056 Sum_probs=60.0
Q ss_pred cEEEEEcCCEEEEEeCC---CcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEEEE
Q 000170 447 PQVLAVHPSFIAVGMSK---GAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVTVW 523 (1950)
Q Consensus 447 pt~ia~s~~~IAvGts~---G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~lW 523 (1950)
.+-+.+++..+..+|.. ..|.++|.+.+ +.+. ......+. ---.+++. +++.......++.+.+|
T Consensus 23 tqGL~~~~~~LyestG~~g~S~v~~vD~~tg---------kv~~-~~~l~~~~-fgeGi~~~-~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLRGHLYESTGETGRSSVRKVDLETG---------RILQ-RAEVPPPY-FGAGIVAW-RDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEEETTEEEEEECCTTSCEEEEEETTTC---------CEEE-EEECCTTC-CEEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred cccEEEECCEEEEECCCCCCceEEEEECCCC---------CEEE-EEeCCCCc-ceeEEEEe-CCEEEEEEeeCCEEEEE
Confidence 45677887776666655 48999998642 2111 11111111 01223332 24444555678999999
Q ss_pred ECCCCceeeeeccCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEcc
Q 000170 524 DVQRASAAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHSL 574 (1950)
Q Consensus 524 Dl~~g~~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~f 574 (1950)
|..+.+.+.++.-+- .+ +.+++ + +. .++.+|-++.++...-
T Consensus 91 D~~tl~~~~ti~~~~-~G-wglt~--d-----g~-~L~vSdgs~~l~~iDp 131 (243)
T 3mbr_X 91 DLATLTPRARFRYPG-EG-WALTS--D-----DS-HLYMSDGTAVIRKLDP 131 (243)
T ss_dssp ETTTTEEEEEEECSS-CC-CEEEE--C-----SS-CEEEECSSSEEEEECT
T ss_pred ECCcCcEEEEEeCCC-Cc-eEEee--C-----CC-EEEEECCCCeEEEEeC
Confidence 999999999886321 11 34443 3 22 3444566766666653
No 411
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.14 E-value=38 Score=31.10 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=28.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|...+. ...++-.-|..||..|. .|..|...-
T Consensus 15 ~~~C~~C~~~I~~~g~-~~~~~~a~~~~~H~~CF-------------~C~~C~~~L 56 (77)
T 2egq_A 15 AKKCAGCKNPITGFGK-GSSVVAYEGQSWHDYCF-------------HCKKCSVNL 56 (77)
T ss_dssp CCCCSSSCCCCCCCSS-CCCEEEETTEEEETTTC-------------BCSSSCCBC
T ss_pred CccCcccCCcccCCCC-CceeEEECcceeCcccC-------------EehhcCCCC
Confidence 4689999999986110 01234445899999996 477786543
No 412
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=26.60 E-value=12 Score=36.51 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=28.1
Q ss_pred CCcccccccccccCCCCCeEEEecCC---CcccccccccccccCCCCCCCCCCC-cCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCG---HATHIQCELLENESSSKSNLSGCPL-CMP 1808 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CG---HafH~~CL~~en~g~~~~~~~~Cpi-C~~ 1808 (1950)
..+.++|+++-.+. .|.-=.|. ..||..|+.+. ......|.||. |..
T Consensus 25 ~~~yCiC~~~~~g~----MI~CD~c~C~~eWfH~~CVgl~---~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYCFCRNVSYGP----MVACDNPACPFEWFHYGCVGLK---QAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCSTTTCCCSSS----EECCCSSSCSCSCEETTTSSCS---SCTTSCCCSSHHHHH
T ss_pred CCcEEEeCCCCCCC----EEEecCCCCccccCcCccCCCC---cCCCCCccCChhhcc
Confidence 33444999864432 22222444 68999999642 22234699999 874
No 413
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=26.58 E-value=34 Score=34.80 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=21.6
Q ss_pred CcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
..|..|+++|.... .++-.-|+.||..|.
T Consensus 9 ~~C~~C~~~I~~~e----~~~~a~~~~~H~~CF 37 (123)
T 2l3k_A 9 GLCASCDKRIRAYE----MTMRVKDKVYHLECF 37 (123)
T ss_dssp CCCSSSSCCCCTTC----CCCCCSSCCCCTTTC
T ss_pred CcccCCCCeecCCc----eEEEECCcccccccC
Confidence 38999999998632 233445899999995
No 414
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.45 E-value=52 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|... .|-.-|..||..|. .|-.|...-
T Consensus 15 ~~~C~~C~~~I~~~------~v~a~~~~~H~~CF-------------~C~~C~~~L 51 (80)
T 2cuq_A 15 APRCARCSKTLTQG------GVTYRDQPWHRECL-------------VCTGCQTPL 51 (80)
T ss_dssp SCCCTTTCCCCCSC------CEESSSSEECTTTC-------------BCSSSCCBC
T ss_pred CCcCCCCCCEecCc------EEEECCchhhhhhC-------------CcccCCCcC
Confidence 46899999999753 24466899999996 477787544
No 415
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.08 E-value=46 Score=30.97 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=28.3
Q ss_pred CCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1754 RSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1754 ~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...+|..|+++|... ++-.-|..||..|. .|..|...-
T Consensus 14 ~~~~C~~C~~~I~~~------~~~a~~~~~H~~CF-------------~C~~C~~~L 51 (81)
T 2dlo_A 14 TLEKCATCSQPILDR------ILRAMGKAYHPGCF-------------TCVVCHRGL 51 (81)
T ss_dssp SCCBCTTTCCBCCSC------CEEETTEEECTTTC-------------BCSSSCCBC
T ss_pred CCCccccCCCeecce------eEEECCccccHHhc-------------CcccCCCcc
Confidence 357899999999842 34456899999996 477886543
No 416
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=26.04 E-value=13 Score=34.90 Aligned_cols=56 Identities=21% Similarity=0.447 Sum_probs=34.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKNT 1812 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~~ 1812 (1950)
..+.++|+++.... ...|--=.|.--||..|+............+.|+.|..+...
T Consensus 9 ~~~yCiC~~~~~~~--~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 9 VPVYCVCRLPYDVT--RFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp CCEETTTTEECCTT--SCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred CeeEEECCCcCCCC--CCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 45566999876432 123444468888999999642211111145899999875443
No 417
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=26.00 E-value=7.7e+02 Score=28.04 Aligned_cols=122 Identities=11% Similarity=0.051 Sum_probs=67.2
Q ss_pred CCCcEEEEEcC--CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCCcEE
Q 000170 444 HGSPQVLAVHP--SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADGHVT 521 (1950)
Q Consensus 444 ~G~pt~ia~s~--~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG~I~ 521 (1950)
++.+-.|++.+ .|+++--.++.+.+|++.... .-.......+.......+.....|||++++.+|.++.+.+...
T Consensus 69 ~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~---~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~ 145 (255)
T 3qqz_A 69 VKDLETIEYIGDNQFVISDERDYAIYVISLTPNS---EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIE 145 (255)
T ss_dssp CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC---CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEE
T ss_pred CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC---eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCce
Confidence 45677777765 344444456788898863210 0000011111100112345589999999998888888777767
Q ss_pred EEECC---CCceeeeec------cCcCCCeEEEEEecCCCccCCceEEEEecCCceEEEEc
Q 000170 522 VWDVQ---RASAAKVIT------GEHTSPVVHTLFLGQDSQVTRQFKAVTGDTKGLVQLHS 573 (1950)
Q Consensus 522 lWDl~---~g~~l~tl~------~~H~~~I~~v~F~~d~~~~~~~~~~vssD~~G~V~~h~ 573 (1950)
||.+. ++..+..+. ..+...+..|+|.+. ++ .+.+.+|++.++....
T Consensus 146 i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~----tg-~lliLS~~s~~L~~~d 201 (255)
T 3qqz_A 146 VYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ----KN-TLLVLSHESRALQEVT 201 (255)
T ss_dssp EEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT----TT-EEEEEETTTTEEEEEC
T ss_pred EEEEcccccCCceeeecchhhccccccCCceeEEEcCC----CC-eEEEEECCCCeEEEEc
Confidence 77665 111222221 123446788999986 34 4555566665554444
No 418
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.78 E-value=1.7e+02 Score=31.28 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=39.2
Q ss_pred cCCCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCcC
Q 000170 1753 PRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKKN 1811 (1950)
Q Consensus 1753 p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~~ 1811 (1950)
.....|.+|++++..-. +...+-..|+|-+-..|-.. . .....|.|-+|....+
T Consensus 66 ~~~~~C~~C~~~fg~l~-~~g~~C~~C~~~VC~~C~~~-~---~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 66 LNETHCARCLQPYRLLL-NSRRQCLECSLFVCKSCSHA-H---PEEQGWLCDPCHLARV 119 (153)
T ss_dssp GGGTBCTTTCCBGGGCS-SCCEECTTTCCEECGGGEEC-C---SSSSSCEEHHHHHHHH
T ss_pred CCCccchhhcCcccccc-CCCCcCCCCCchhhcccccc-c---CCCCcEeeHHHHHHHH
Confidence 35789999999876432 34578889999999999742 1 1234699999987544
No 419
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.73 E-value=17 Score=35.19 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCCCeEEEe--cCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVF--NCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF--~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...|.+|+..-... ..-+++ .|.-+||..|+.... -....|.|+.|....
T Consensus 25 ~~~C~vC~~~~s~~---~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 25 DAVCSICMDGESQN---SNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCSSCCSSSSCS---EEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHHT
T ss_pred CCcCCcCCCCCCCC---CCCEEECCCCCchhhcccCCCCc---cCCCceECccccCcc
Confidence 57899999643111 123333 799999999996321 122469999997643
No 420
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=25.62 E-value=1.3e+02 Score=37.80 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCEEEEecC-CCcEEEEECCCC---ceeeeec
Q 000170 497 APVTAMCFNQPGDLLLAGYA-DGHVTVWDVQRA---SAAKVIT 535 (1950)
Q Consensus 497 ~~VtsLafS~DG~~LasG~~-dG~I~lWDl~~g---~~l~tl~ 535 (1950)
+..+.|.+|+||++|-++.. .|.|.++|+..+ +.+..+.
T Consensus 321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE
Confidence 45899999999998877644 688999999633 4444443
No 421
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=25.57 E-value=2.5e+02 Score=35.79 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=15.3
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 000170 456 FIAVGMSKGAIVVVPGKY 473 (1950)
Q Consensus 456 ~IAvGts~G~I~vfd~k~ 473 (1950)
.+++|+.+|.+.++|.+.
T Consensus 318 ~v~~~~~~G~l~~lD~~t 335 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNREN 335 (571)
T ss_dssp EEEEECTTSEEEEEETTT
T ss_pred EEEEeCCCcEEEEEECCC
Confidence 578899999999999754
No 422
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.22 E-value=91 Score=38.94 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=44.4
Q ss_pred eeEEEEEcCeeEEEEeeecceeEeeEEeccccceeeeeccCCeEEEEeecCeEEEEecC
Q 000170 720 SLLAIAWDRKVQVAKLVKSELKVYGKWSLDSAAIGVAWLDDQMLVVLTLLGQLYLYARD 778 (1950)
Q Consensus 720 ~~LA~aWgn~l~vl~~~k~~~~~~~~~~~~~~I~~l~WLs~~iL~vLt~s~~L~l~d~~ 778 (1950)
.++|+.=|+.|||+.+. .-...+...++++|+.-.|+++++|+++|.+. ++-++.+
T Consensus 78 ~iiALrag~~lQiFnle--~K~klks~~~~e~VvfWkWis~~~l~lVT~ta-VyHWsi~ 133 (494)
T 1bpo_A 78 KVIALKAGKTLQIFNIE--MKSKMKAHTMTDDVTFWKWISLNTVALVTDNA-VYHWSME 133 (494)
T ss_dssp SCEEEEETTEEEEEETT--TTEEEEEEECSSCCCEEEEEETTEEEEECSSE-EEEEESS
T ss_pred cEEEEecCCeEEEEchH--HhhhhcceecCCCceEEEecCCCeEEEEcCCe-eEEeccc
Confidence 47888889999999862 12456778899999999999999999999875 5555553
No 423
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=24.73 E-value=51 Score=31.90 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=22.0
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
..+|..|+++|..+. .++-.-|..||..|.
T Consensus 5 ~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF 34 (101)
T 2cup_A 5 SSGCVECRKPIGADS----KEVHYKNRFWHDTCF 34 (101)
T ss_dssp CCBCSSSCCBCCSSS----CEEEETTEEEETTTC
T ss_pred CCcCcccCCcccCCc----eEEEECccChhhcCC
Confidence 578999999997532 234456889999886
No 424
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=24.59 E-value=38 Score=43.80 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=47.6
Q ss_pred CcEEEEEc--CCEEEE-EeCCCcEEEEeCCCCCC----ccCcccceeeeecccCCCCCCCeEEEEEcCCCCEEEEecCCC
Q 000170 446 SPQVLAVH--PSFIAV-GMSKGAIVVVPGKYSAH----HRDSMDSKMMMLGLLGDRSPAPVTAMCFNQPGDLLLAGYADG 518 (1950)
Q Consensus 446 ~pt~ia~s--~~~IAv-Gts~G~I~vfd~k~~~~----~~d~~~~k~~~l~~~~~~h~~~VtsLafS~DG~~LasG~~dG 518 (1950)
+|-++.++ |+|+.+ +-...+|.++|+..... ..+ .. .++. . +.. -.....-++|++||...++-..|+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~-~~-~~v~-~-~v~-vG~gP~h~aF~~dG~aY~t~~lds 352 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD-PR-SAVV-A-EPE-LGLGPLHTAFDGRGNAYTSLFLDS 352 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC-GG-GGEE-E-CCB-CCSCEEEEEECTTSEEEEEETTTT
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC-cc-cceE-E-EcC-CCCCcceEEECCCCeEEEEEecCC
Confidence 46666666 466554 55678899999842100 000 00 0111 1 111 123478899999996667889999
Q ss_pred cEEEEECCC
Q 000170 519 HVTVWDVQR 527 (1950)
Q Consensus 519 ~I~lWDl~~ 527 (1950)
+|..||+.+
T Consensus 353 qV~kwdi~~ 361 (595)
T 1fwx_A 353 QVVKWNIED 361 (595)
T ss_dssp EEEEEEHHH
T ss_pred cEEEEEhhH
Confidence 999999987
No 425
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=24.33 E-value=5.9e+02 Score=30.10 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=47.2
Q ss_pred cCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeeccc-CCCCCCCeEEEEEcCC---CCEEEEecC-
Q 000170 443 DHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGLL-GDRSPAPVTAMCFNQP---GDLLLAGYA- 516 (1950)
Q Consensus 443 ~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~~-~~~h~~~VtsLafS~D---G~~LasG~~- 516 (1950)
....|..+++.+ ..|.|+...|.|+++|- . .. .. +.... .....+....|+|+|| +.+|-+.+.
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~------G~--~~-~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLISP-S------GK--KL-VASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEECS-S------CE--EE-EEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEeC-C------Cc--eE-eeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 456788888875 35777788899999973 1 11 11 11101 1112345789999998 555555554
Q ss_pred ---C----CcEEEEECCCC
Q 000170 517 ---D----GHVTVWDVQRA 528 (1950)
Q Consensus 517 ---d----G~I~lWDl~~g 528 (1950)
+ +.|.-|+...+
T Consensus 97 ~~~~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGS 115 (354)
T ss_dssp ECGGGCEEEEEEEEEECSS
T ss_pred cCCCCCcceEEEEEEECCC
Confidence 2 67888887654
No 426
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.11 E-value=36 Score=32.02 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
...|..|++++.... .+ -.-|..||..|.
T Consensus 15 ~~~C~~C~~~I~~~e----~v-~a~~~~wH~~CF 43 (82)
T 2co8_A 15 GDLCALCGEHLYVLE----RL-CVNGHFFHRSCF 43 (82)
T ss_dssp SCBCSSSCCBCCTTT----BC-CBTTBCCBTTTC
T ss_pred CCCCcccCCCcccce----EE-EECCCeeCCCcC
Confidence 578999999996432 22 256889999996
No 427
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=23.77 E-value=15 Score=39.71 Aligned_cols=53 Identities=23% Similarity=0.437 Sum_probs=32.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
...| +|+++-... ...+--=.|..-||..|+............+.||.|....
T Consensus 8 ~~~C-~C~~~~~~~--~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDES--KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTT--SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCC--CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3567 999875322 1223333788899999996421111112469999998643
No 428
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=23.67 E-value=47 Score=30.50 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=20.3
Q ss_pred cccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1757 LCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
+|..|+++|.... .+ -.-|..||..|.
T Consensus 2 ~C~~C~~~I~~~~----~v-~a~~~~~H~~CF 28 (76)
T 1iml_A 2 KCPKCDKEVYFAE----RV-TSLGKDWHRPCL 28 (76)
T ss_dssp BCTTTSSBCCGGG----EE-EETTEEEETTTC
T ss_pred cCCCCCCEEECce----EE-EECCccccCCCC
Confidence 6999999998432 33 344999999996
No 429
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=39 Score=31.46 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=27.1
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
..+|..|+++|... ++-.-|..||..|. .|-.|...
T Consensus 15 ~~~C~~C~~~I~~~------~v~a~~~~wH~~CF-------------~C~~C~~~ 50 (81)
T 1v6g_A 15 GTRCFSCDQFIEGE------VVSALGKTYHPDCF-------------VCAVCRLP 50 (81)
T ss_dssp CCBCTTTCCBCCSC------CEEETTEEECTTTS-------------SCSSSCCC
T ss_pred CCcCccccCEeccc------eEEECCceeCccCC-------------ccccCCCC
Confidence 46899999999843 24456899999995 47777654
No 430
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=23.45 E-value=1.3e+02 Score=38.80 Aligned_cols=67 Identities=22% Similarity=0.074 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCEEE-EecCCCcEEEEECCCCc------------eeeeeccCcCCCeEEEEEecCCCccCCceEEEEecC
Q 000170 499 VTAMCFNQPGDLLL-AGYADGHVTVWDVQRAS------------AAKVITGEHTSPVVHTLFLGQDSQVTRQFKAVTGDT 565 (1950)
Q Consensus 499 VtsLafS~DG~~La-sG~~dG~I~lWDl~~g~------------~l~tl~~~H~~~I~~v~F~~d~~~~~~~~~~vssD~ 565 (1950)
.-++.|||||+++. ++-.+.+|.++|+.+.+ ....+ .-...-.|++|.++ + .+-++.--
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~gP~h~aF~~d-----G-~aY~t~~l 350 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGLGPLHTAFDGR-----G-NAYTSLFL 350 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCSCEEEEEECTT-----S-EEEEEETT
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCCCcceEEECCC-----C-eEEEEEec
Confidence 45689999999655 55688999999999763 22222 12367899999997 3 45555544
Q ss_pred CceEEEEc
Q 000170 566 KGLVQLHS 573 (1950)
Q Consensus 566 ~G~V~~h~ 573 (1950)
++.|..++
T Consensus 351 dsqV~kwd 358 (595)
T 1fwx_A 351 DSQVVKWN 358 (595)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEE
Confidence 44444444
No 431
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.87 E-value=32 Score=36.89 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=21.5
Q ss_pred ccCCCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1752 APRSLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1752 ~p~s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
.+....|..|+++|.... ++..-|..||..|.
T Consensus 3 ~~~~~~C~~C~~~I~~~~-----~~~a~~~~wH~~CF 34 (169)
T 2rgt_A 3 TPEIPMCAGCDQHILDRF-----ILKALDRHWHSKCL 34 (169)
T ss_dssp ----CBBSSSSSBCCSSS-----CEECSSCEECTTTS
T ss_pred CCCCCccccCCCccCCcE-----EEEECCcEEccccC
Confidence 345678999999997642 34457889998886
No 432
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=22.37 E-value=26 Score=30.38 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=28.5
Q ss_pred cccccccccccCCCCCeEEEe-cCCCcccccccccccccCCCCCCCCCCCcC
Q 000170 1757 LCCICNCLLTKNSSSFQIRVF-NCGHATHIQCELLENESSSKSNLSGCPLCM 1807 (1950)
Q Consensus 1757 ~C~iC~k~L~~~~~~~~ivVF-~CGHafH~~CL~~en~g~~~~~~~~CpiC~ 1807 (1950)
-|.+|+++..... ..|.-= .|.-=||..|+....... ....+.||.|.
T Consensus 4 ~cc~C~~p~~~~~--~mI~Cd~~C~~WfH~~Cvgl~~~~~-~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKV--DWVQCDGGCDEWFHQVCVGVSPEMA-ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTC--CEEECTTTTCCEEETTTTTCCHHHH-HHSCCCCSCC-
T ss_pred cCCCCcCccCCCC--cEEEeCCCCCccCcccccCCCcccc-CCCCEECCCCC
Confidence 3788988774321 122222 588889999996422110 01468999984
No 433
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.93 E-value=45 Score=31.23 Aligned_cols=37 Identities=16% Similarity=0.409 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCC
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPK 1809 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~ 1809 (1950)
...|..|+++|.... +|-.-|..||..|. .|..|...
T Consensus 15 ~~~C~~C~~~I~~~~-----~v~a~~~~wH~~CF-------------~C~~C~~~ 51 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ-----SLLALDKQWHVSCF-------------KCQTCSVI 51 (80)
T ss_dssp CSCCTTTCCCCSSSC-----CEEETTEEECTTTC-------------BCSSSCCB
T ss_pred CCCCcCcCCeeCCCe-----EEEECCcccccccC-------------CcCcCCCC
Confidence 578999999997432 23346899999996 47778653
No 434
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.51 E-value=66 Score=32.12 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
..+|..|+++|... .++-.-|..||..|.
T Consensus 3 ~~~C~~C~~~I~~~-----~~~~a~~~~wH~~CF 31 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR-----YFLKAIDQYWHEDCL 31 (114)
T ss_dssp CBCBSSSCSCBCSS-----EEEECSSSEECTTTC
T ss_pred CCCCcCCCCeeCCc-----EEEEECchhHHHhcC
Confidence 36799999999854 355567899999996
No 435
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=21.06 E-value=1.2e+02 Score=37.65 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=36.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCccCcccceee--eecccCCCCCCCeEEEEEcCCCCEEEEec--CCCcEE
Q 000170 454 PSFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMM--MLGLLGDRSPAPVTAMCFNQPGDLLLAGY--ADGHVT 521 (1950)
Q Consensus 454 ~~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~--~l~~~~~~h~~~VtsLafS~DG~~LasG~--~dG~I~ 521 (1950)
+..|+|=|+|+.|++||+..+.+ .....+.. .++ .+..--.|.++||+++|-+|-+.. ..|+|.
T Consensus 139 ds~LVVLtsD~~Ir~yDl~~s~~--~P~~L~k~~~~fg--~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 139 DSCIVVLKEDDTITMFDILNSQE--KPIVLNKPNNSFG--LDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp GCEEEEEETTSCEEEEETTCTTS--CCEEESCCCSEEE--SCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred CCeEEEEecCCEEEEEEcccCCC--CCcchhccccccC--CCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 35789999999999999964211 00000000 011 122336799999998765444433 555554
No 436
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.06 E-value=53 Score=30.59 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCcccccccccccCCCCCeEEEecCCCccccccc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCE 1788 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL 1788 (1950)
..+|..|+++|.... .++-.-|..||..|.
T Consensus 15 ~~~C~~C~~~I~~~~----~~~~a~~~~~H~~CF 44 (82)
T 2ehe_A 15 ANTCAECQQLIGHDS----RELFYEDRHFHEGCF 44 (82)
T ss_dssp SCBCTTTCCBCCSSC----CBCCCSSCCCBTTTS
T ss_pred CCcCccCCCccccCc----EEEEeCCccccccCC
Confidence 468999999998422 233345889999996
No 437
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.80 E-value=13 Score=34.89 Aligned_cols=52 Identities=23% Similarity=0.398 Sum_probs=32.3
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccC----CCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESS----SKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~----~~~~~~~CpiC~~~~ 1810 (1950)
...| +|+++-... ..|--=.|..-||..|+....... .....+.|+.|..+.
T Consensus 16 ~~~C-~C~~~~~~~---~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNR---FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSS---CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCC---CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4456 899876532 233334788899999996421100 012469999998654
No 438
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=20.62 E-value=7.9e+02 Score=28.82 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=47.0
Q ss_pred cCCCcEEEEEcC-CEEEEEeCCCcEEEEeCCCCCCccCcccceeeeecc-cCCCCCCCeEEEEEcCC---CCEEEEecCC
Q 000170 443 DHGSPQVLAVHP-SFIAVGMSKGAIVVVPGKYSAHHRDSMDSKMMMLGL-LGDRSPAPVTAMCFNQP---GDLLLAGYAD 517 (1950)
Q Consensus 443 ~~G~pt~ia~s~-~~IAvGts~G~I~vfd~k~~~~~~d~~~~k~~~l~~-~~~~h~~~VtsLafS~D---G~~LasG~~d 517 (1950)
....|..+++.+ ..|.|+...|.|.+++- . +... .... ......+....|+|+|| +.+|-+.+..
T Consensus 29 ~l~~P~~ia~~pdG~l~V~e~~g~I~~i~~-g--------~~~~-~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~ 98 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIAERPGRIRLFRE-G--------RLST-YAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTV 98 (352)
T ss_dssp CCSCEEEEEECTTSCEEEEETTTEEEEEET-T--------EEEE-EEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCceEEEEcCCCeEEEEeCCCeEEEEEC-C--------CccE-eecceEeecCCCCceeEEECCCCCCCCEEEEEEec
Confidence 456789999876 24667777899999972 1 0111 1110 11112345789999999 5555555542
Q ss_pred ------CcEEEEECCCC
Q 000170 518 ------GHVTVWDVQRA 528 (1950)
Q Consensus 518 ------G~I~lWDl~~g 528 (1950)
+.|..|++..+
T Consensus 99 ~~~~~~~~v~r~~~~~~ 115 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGE 115 (352)
T ss_dssp CTTSSEEEEEEEEECSS
T ss_pred CCCCCccEEEEEEeCCC
Confidence 67888988754
No 439
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.53 E-value=43 Score=31.16 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=27.4
Q ss_pred CCcccccccccccCCCCCeEEEecCCCcccccccccccccCCCCCCCCCCCcCCCc
Q 000170 1755 SLLCCICNCLLTKNSSSFQIRVFNCGHATHIQCELLENESSSKSNLSGCPLCMPKK 1810 (1950)
Q Consensus 1755 s~~C~iC~k~L~~~~~~~~ivVF~CGHafH~~CL~~en~g~~~~~~~~CpiC~~~~ 1810 (1950)
..+|..|+++|... ++-.-|..||..|. .|..|...-
T Consensus 15 ~~~C~~C~~~I~~~------~~~a~~~~~H~~CF-------------~C~~C~~~L 51 (81)
T 1x6a_A 15 GEFCHGCSLLMTGP------FMVAGEFKYHPECF-------------ACMSCKVII 51 (81)
T ss_dssp SCBCTTTCCBCCSC------CBCCTTCCBCTTSC-------------BCTTTCCBC
T ss_pred CCcCccCCCCcCce------EEEECCceeccccC-------------CccCCCCcc
Confidence 45899999999843 24456899999996 477787543
No 440
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.11 E-value=54 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=21.6
Q ss_pred CcccccccccccCCCCCeEEEecCCCccc--cccc
Q 000170 1756 LLCCICNCLLTKNSSSFQIRVFNCGHATH--IQCE 1788 (1950)
Q Consensus 1756 ~~C~iC~k~L~~~~~~~~ivVF~CGHafH--~~CL 1788 (1950)
.+|..|+++|.... -+|-.-|..|| ..|.
T Consensus 3 ~~C~~C~~~I~~~~----~~v~a~~~~wH~~~~CF 33 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV----QRVTYNNFSWHASTECF 33 (65)
T ss_dssp EECTTTSSEECTTS----CEEEETTEEEETTTTTS
T ss_pred CCCcCCCCeeccCc----eEEEECCCccCCCCCCE
Confidence 57999999998531 13444699999 9995
Done!