Query 000171
Match_columns 1946
No_of_seqs 336 out of 553
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 100.0 7.9E-31 2.7E-35 285.7 11.9 125 31-162 5-134 (183)
2 2rkk_A Vacuolar protein sortin 99.9 3E-23 1E-27 222.0 11.5 115 42-163 5-140 (168)
3 4hg6_A Cellulose synthase subu 68.0 3.8 0.00013 54.1 5.2 132 1312-1457 224-361 (802)
4 1ich_A TNF-1, tumor necrosis f 12.6 1.4E+02 0.0049 30.6 3.7 75 1106-1181 11-101 (112)
5 1t8h_A YLMD protein sequence h 9.4 1.1E+02 0.0038 35.7 1.9 23 1420-1451 29-52 (277)
6 3n4p_A Terminase subunit UL89 9.0 1.2E+02 0.004 35.4 1.8 54 805-869 142-195 (279)
7 2lch_A Protein OR38; structura 8.8 7.6E+02 0.026 24.3 7.5 80 894-976 16-96 (113)
8 1l6x_B Minimized B-domain of p 6.8 83 0.0028 26.0 -0.5 23 1333-1355 1-23 (34)
9 2ysr_A DEP domain-containing p 6.2 1.7E+02 0.006 29.3 1.3 31 811-841 8-38 (105)
10 3kyj_A CHEA3, putative histidi 6.1 1.1E+03 0.039 24.5 7.5 80 894-976 21-101 (144)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=99.97 E-value=7.9e-31 Score=285.73 Aligned_cols=125 Identities=26% Similarity=0.397 Sum_probs=118.8
Q ss_pred CCCCCCCCCccChHHHHHHhhhhhccCCeehhhhHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhcCccccccCCCc
Q 000171 31 FDSEVVPSSLSEIAPILRVANEVESSNPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLERENAPTYMERGKKS 110 (1946)
Q Consensus 31 ~dse~VP~sLK~I~pfLrrA~Ele~~dP~VAY~Cr~YA~e~al~ld~~S~grgVrqFkt~LLd~LEq~k~~~lk~~l~~~ 110 (1946)
|+.++||++||+|.|||+||+|+|++||+||||||+||+|++|+++++ |+||++|+++|||+||++| +++.++
T Consensus 5 ~~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~~--~~e~~~f~~~LLd~LE~~K-----~~~~~~ 77 (183)
T 2lxl_A 5 APLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSK--TPECRKFLSKLMDQLEALK-----KQLGDN 77 (183)
T ss_dssp CCCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCSC--CTTHHHHHHHHHHHHHHHH-----HHHCSC
T ss_pred CCCCCCChhHHhHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhcccC--ChhHHHHHHHHHHHHHHHH-----Hhccch
Confidence 688999999999999999999999999999999999999999999876 5999999999999999964 456789
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHccCC
Q 000171 111 DAREMQSFYQHYYKKYIQALQNAADKADRAQ-----LTKAYQTANVLFEVLKAVNLT 162 (1946)
Q Consensus 111 Da~~lq~fyq~YvE~fa~kLF~~Ad~~DRa~-----tak~F~tAsvLfeVL~~fg~~ 162 (1946)
|+++++.++++|+|+||+++|++||++||++ |+|+|+||++|||||++||++
T Consensus 78 dai~~~~~~~ayve~fAlklF~~Ad~~dRa~~~t~~~~k~F~aA~~f~eVL~~fg~l 134 (183)
T 2lxl_A 78 EAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVITVFGEL 134 (183)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999995 999999999999999999986
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3e-23 Score=222.00 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=102.7
Q ss_pred ChHHHHHHhhhhhcc-CCeehhhhHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHhcCccccccCCCchh--------
Q 000171 42 EIAPILRVANEVESS-NPRVAYLCRFYAFEKAHRLDPTSSGRGVRQFKTALLQRLERENAPTYMERGKKSDA-------- 112 (1946)
Q Consensus 42 ~I~pfLrrA~Ele~~-dP~VAY~Cr~YA~e~al~ld~~S~grgVrqFkt~LLd~LEq~k~~~lk~~l~~~Da-------- 112 (1946)
+|.|||+||+|++++ +|+||||||+||+|+++++ ++.++++++|++.|||+||+.|+ ++.++|+
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~--~~~s~e~~~~l~~LlD~LE~~K~-----~~~~~e~~~~~~~~~ 77 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSE--EDRSQEMTALATELLDTIEAFKK-----EIGGESEAEDSDKSL 77 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHHHHHH-----TTC-----------C
T ss_pred hHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHH-----hccccccccccccch
Confidence 689999999999999 9999999999999999999 45569999999999999999654 4566666
Q ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHH-HHHHHHHHHHHccCCC
Q 000171 113 ------REMQSFYQHYYKKYIQALQNAADKADRA-----QLTKAYQ-TANVLFEVLKAVNLTE 163 (1946)
Q Consensus 113 ------~~lq~fyq~YvE~fa~kLF~~Ad~~DRa-----~tak~F~-tAsvLfeVL~~fg~~~ 163 (1946)
++++..+++|+|+||+++|++||++||+ +++|.|+ ||.+|++||++||+++
T Consensus 78 ~~~~~~i~d~~~a~a~ve~FAlklF~~Ad~~drag~~~k~~~k~fy~ta~~F~avl~~fg~~~ 140 (168)
T 2rkk_A 78 HVMNTLIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENI 140 (168)
T ss_dssp TTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8999999999999999999999999998 7899999 7888999999999885
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=67.95 E-value=3.8 Score=54.06 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=81.0
Q ss_pred CCCcccccchhhhhcccccccccCCccchH-HHHhhhhhhHHHHhhcCCCCCCceEecccceeeccc-----chhhhhhc
Q 000171 1312 EGKPENQNHAIIFTRGEGLQTIDMNQDNYM-EEALKMRNLLQEFLKKHDGVRYPSILGLREHIFTGS-----VSSLAWFM 1385 (1946)
Q Consensus 1312 EGKpeNQNhAiiF~RGE~lQtIDmNQDnyl-eE~lKmrnlL~ef~~~~~g~~~~~IlG~RE~IFt~~-----v~~La~f~ 1385 (1946)
.||+.|-|+++=-++||++-++|.+- .+ .++++ .+++.|+++. .+.+++.+-++..++ .+......
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L~--~lv~~~~~dp----~v~~V~~~~~~~~~~~~~~~~~~~~~~~ 295 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFLA--RTVGYFVEDP----DLFLVQTPHFFINPDPIQRNLALGDRCP 295 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHHH--HHHHHHHHSS----SCCEEECCCCBSSCCHHHHHHTCCTTSC
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCC--CcChHHHH--HHHHHHhcCC----CeEEEeccEEEeCCchHhhhhhHHhhhh
Confidence 48999999999999999999999753 22 33333 5566775432 345565554444433 22222222
Q ss_pred ccchhhHHHHHHHhhcCccceeeeccCCcccccccccccCcccccccccccchhhhccccccccCcceeeee
Q 000171 1386 SNQETSFVTIGQRLLANPLKVRFHYGHPDVFDRLFHLTRGGVSKASKIINLSEDIFAGFNSTLREGNVTHHE 1457 (1946)
Q Consensus 1386 a~qE~sF~Tl~qR~la~Pl~~r~HYGHPD~fd~~f~~trGGiSKAsk~i~lsEDifaG~n~~lRgG~ith~E 1457 (1946)
..+..|-...++.... .+...--|+==++.|.....-||... -.++||..-++-...+|.++.++.
T Consensus 296 -~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 296 -PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYID 361 (802)
T ss_dssp -CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECC
T ss_pred -HHHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEec
Confidence 2233444444544432 23333345555666666666688774 356899999999988888887764
No 4
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=12.57 E-value=1.4e+02 Score=30.63 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=50.0
Q ss_pred CcccHHHHHHhhCC-hhhhhHHHHhccCcchhcc----CC-----hhhHHHHHhhhhccc------ccccccccccccHH
Q 000171 1106 DGVSILFYLQKIFP-DEWTNFLERVKCNNEEELK----GS-----DELEEELRLWASYRG------QTLTRTVRGMMYYR 1169 (1946)
Q Consensus 1106 dgvSiL~YLq~iyP-dEW~NFlER~~~~~~~~~~----~~-----~~~~~elRlWAS~Rg------QTL~RTVrGmMyY~ 1169 (1946)
+.-.+|+..-..-| .+|+.|+.++|..+ .++. +. +..-.=||.|----| +||..+.+-|=--.
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse-~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~ 89 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSD-HEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLG 89 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCH-HHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCH-HHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHH
Confidence 44567777777777 89999999999765 2111 01 122333999998866 78888888777777
Q ss_pred HHHHHHHhhhcc
Q 000171 1170 KALELQAFLDMA 1181 (1946)
Q Consensus 1170 ~ALkll~~lE~~ 1181 (1946)
-|-+++..++.+
T Consensus 90 ~ae~Ie~~l~~~ 101 (112)
T 1ich_A 90 CLEDIEEALCGP 101 (112)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 777777766654
No 5
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=9.42 E-value=1.1e+02 Score=35.68 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=15.0
Q ss_pred ccccc-CcccccccccccchhhhccccccccCc
Q 000171 1420 FHLTR-GGVSKASKIINLSEDIFAGFNSTLREG 1451 (1946)
Q Consensus 1420 f~~tr-GGiSKAsk~i~lsEDifaG~n~~lRgG 1451 (1946)
+++|| ||||++ .|+++|.-+.-|
T Consensus 29 ~fttR~GGvS~~---------py~slNlg~~vg 52 (277)
T 1t8h_A 29 GLTTKHGGESKG---------PFASLNMGLHVG 52 (277)
T ss_dssp EEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred EEEcCCCCccCC---------cccceeccCCCC
Confidence 45666 888776 577887655433
No 6
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=9.04 E-value=1.2e+02 Score=35.44 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=42.3
Q ss_pred chhHHHhHHHHhHHHHHhhccccccCChhhhhhhcccccCCCCCCcccCchhhhcCchhHHHHHh
Q 000171 805 NKEKEAARFAQLWNKVITSFREEDLISDREMNLLLVPYWADRDLGLIQWPPFLLASKIPIALDMA 869 (1946)
Q Consensus 805 ~~~~~~~~fs~vWNeII~S~reEdLis~~e~~lL~~p~~~~~~~~~i~wP~FLla~ki~~Ald~a 869 (1946)
.+++.+...|-+-++.+.+.+. .+++.++ ..+++ .|+||.|||..+=..|.|.-
T Consensus 142 SsQdsAVaIA~~i~~~~~~~~~--------~~~~FyH-~~d~~--~v~~PfylL~~eK~~Afe~F 195 (279)
T 3n4p_A 142 TNQAAAVRIACLIRQSVQSSTL--------IRVLFYH-TPDQN--HIEQPFYLMGRDKALAVEQF 195 (279)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCC--------CEEEEEC-EEETT--TEEESCBCCSTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhccc--------ccEEEEe-cCCCc--cccCCchhhccchHHHHHHH
Confidence 4688999999999998888776 2456676 45545 99999999998877777764
No 7
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=8.78 E-value=7.6e+02 Score=24.30 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhcccccccccCcccchHHHHHHHHHHHhhcCcchhhHHHHHHHH
Q 000171 894 KECYASFRNIIKFLVQG-NEKRVIDDIFSEVDRHIEAGNLISEYKMSSLPSLYDHFVKLIKYLLDNKQEDRDQVVILFQD 972 (1946)
Q Consensus 894 ~e~y~~~~~il~~l~~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~~~~Lp~~~~~~~~L~~~L~~~~~~~~~~vv~~l~~ 972 (1946)
.|..+.+...|..+-.+ .+...+..+|+.+-.. .. --..+.+..+..+..++.++++.+.++.......++..+.+
T Consensus 16 ~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTl-KG--sa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~~l~~~l~~ 92 (113)
T 2lch_A 16 KELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTM-KE--ITETMGFSSVAKVLHTIMNLVDKMLNSEIKITSDLIDKVKK 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HH--HHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhH-HH--HHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34445555555555444 5667788888776532 11 13446788888999999999999888765545556666666
Q ss_pred HHHH
Q 000171 973 MLEV 976 (1946)
Q Consensus 973 l~e~ 976 (1946)
-++.
T Consensus 93 ~~d~ 96 (113)
T 2lch_A 93 KLDM 96 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=6.77 E-value=83 Score=26.03 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=19.6
Q ss_pred ccCCccchHHHHhhhhhhHHHHh
Q 000171 1333 IDMNQDNYMEEALKMRNLLQEFL 1355 (1946)
Q Consensus 1333 IDmNQDnyleE~lKmrnlL~ef~ 1355 (1946)
+|+-|.|-|=|.|+|.||-+|=.
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQr 23 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQR 23 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHH
Confidence 46779999999999999988754
No 9
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=6.16 E-value=1.7e+02 Score=29.33 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=23.6
Q ss_pred hHHHHhHHHHHhhccccccCChhhhhhhccc
Q 000171 811 ARFAQLWNKVITSFREEDLISDREMNLLLVP 841 (1946)
Q Consensus 811 ~~fs~vWNeII~S~reEdLis~~e~~lL~~p 841 (1946)
.+-.++||+||..||....|-++...+=.+|
T Consensus 8 ~~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 8 YRATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred chHHHHHHHHHHHHHcCCCcceeeeCCEECC
Confidence 3456799999999999988888765544443
No 10
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=6.06 E-value=1.1e+03 Score=24.51 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhcccccccccCcccchHHHHHHHHHHHhhcCcchhhHHHHHHHH
Q 000171 894 KECYASFRNIIKFLVQG-NEKRVIDDIFSEVDRHIEAGNLISEYKMSSLPSLYDHFVKLIKYLLDNKQEDRDQVVILFQD 972 (1946)
Q Consensus 894 ~e~y~~~~~il~~l~~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~~~~Lp~~~~~~~~L~~~L~~~~~~~~~~vv~~l~~ 972 (1946)
.|..+.+...|..+-.+ .+...++.||+.+-.. .. --..+.+..+-.+..++.++++.+.++.......++..|..
T Consensus 21 ~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTL-KG--sA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~dlll~ 97 (144)
T 3kyj_A 21 AQALDAMEASLLALQAGEDAAAHVGPLFRAVHTF-KG--NSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLF 97 (144)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HH--HHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhH-hh--HHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34444555555555554 6777889998887642 11 12346777888889999999999988654434455555555
Q ss_pred HHHH
Q 000171 973 MLEV 976 (1946)
Q Consensus 973 l~e~ 976 (1946)
-++.
T Consensus 98 ~~D~ 101 (144)
T 3kyj_A 98 ASDT 101 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
Done!