Query 000171
Match_columns 1946
No_of_seqs 336 out of 553
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 22:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000171.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000171hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfi1 g.41.3.1 (I:1-49) RBP9 12.3 22 0.0016 29.6 0.1 8 336-343 3-10 (49)
2 d1xhba2 c.68.1.17 (A:95-422) P 8.8 55 0.004 34.8 1.8 34 1313-1346 94-130 (328)
3 d1i5na_ a.24.10.3 (A:) Chemota 8.1 3.8E+02 0.027 24.5 7.5 74 898-974 18-92 (128)
4 d1wlna1 b.26.1.2 (A:8-114) Afa 8.0 78 0.0057 29.3 2.2 42 1297-1339 21-73 (107)
5 d1n0ua4 d.58.11.1 (A:482-560) 7.8 96 0.007 27.4 2.6 35 1220-1255 7-41 (79)
6 d1r0va1 c.52.2.1 (A:62-139) Di 7.4 1.5E+02 0.011 25.1 3.5 33 1234-1277 40-72 (78)
7 d1tqga_ a.24.10.3 (A:) Chemota 6.6 5.5E+02 0.04 22.5 7.6 77 895-974 16-93 (105)
8 d2yrka1 g.37.1.4 (A:8-55) Zinc 6.5 28 0.002 28.7 -1.6 13 1364-1376 17-29 (48)
9 d1x4la1 g.39.1.3 (A:8-36) Four 6.0 64 0.0046 24.0 0.3 8 1622-1629 11-18 (29)
10 d1sq5a_ c.37.1.6 (A:) Pantothe 5.7 2.6E+02 0.019 30.3 5.3 50 1340-1402 57-106 (308)
No 1
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.32 E-value=22 Score=29.57 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.3
Q ss_pred ccccchhH
Q 000171 336 NLRFMPEC 343 (1946)
Q Consensus 336 NLRFMPEC 343 (1946)
.+||+|||
T Consensus 3 ~~rFC~eC 10 (49)
T d1twfi1 3 TFRFCRDC 10 (49)
T ss_dssp CCCBCSSS
T ss_pred ceecChhc
Confidence 45555555
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.82 E-value=55 Score=34.81 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCcccccchhhhhcccccccccCC---ccchHHHHhh
Q 000171 1313 GKPENQNHAIIFTRGEGLQTIDMN---QDNYMEEALK 1346 (1946)
Q Consensus 1313 GKpeNQNhAiiF~RGE~lQtIDmN---QDnyleE~lK 1346 (1946)
|.+...|.++--++||+|=.+|.. ..++||+.++
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHHH
Confidence 677788999999999999888765 5566665543
No 3
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=8.09 E-value=3.8e+02 Score=24.51 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhcccccccccCcccchHHHHHHHHHHHhhcCcchhhHHHHHHHHHH
Q 000171 898 ASFRNIIKFLVQG-NEKRVIDDIFSEVDRHIEAGNLISEYKMSSLPSLYDHFVKLIKYLLDNKQEDRDQVVILFQDML 974 (1946)
Q Consensus 898 ~~~~~il~~l~~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~~~~Lp~~~~~~~~L~~~L~~~~~~~~~~vv~~l~~l~ 974 (1946)
+.+...|..+-.+ .+...++.+|+.+-.. .. -...+.+..+-.+..++.++++.+.++...-...++..+..-.
T Consensus 18 ~~l~~~l~~le~~~~~~~~~~~l~R~~HTL-KG--~a~~~gl~~i~~lah~lE~~l~~lr~~~~~~~~~~~~~l~~~~ 92 (128)
T d1i5na_ 18 ADMEQHLLDLVPESPDAEQLNAIFRAAHSI-KG--GAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETK 92 (128)
T ss_dssp HHHHHHHHHCCTTSCCHHHHHHHHHHHHHH-HH--HHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-hh--HHhhcChHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 3444445455444 5667788888887642 11 2234578888899999999999998765443344444444443
No 4
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.05 E-value=78 Score=29.30 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=29.8
Q ss_pred ceEEEeecCCCcccCCCCc-cc----------ccchhhhhcccccccccCCccc
Q 000171 1297 QVIYRIKLPGPAILGEGKP-EN----------QNHAIIFTRGEGLQTIDMNQDN 1339 (1946)
Q Consensus 1297 ~eiYrikLPG~pilGEGKp-eN----------QNhAiiF~RGE~lQtIDmNQDn 1339 (1946)
..+|+++ +|...+|-|+. +| ..||.|-..++.+.+.|.+..|
T Consensus 21 ~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 21 PKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp CCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred cEEEEEC-CCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccccEEecCCCCc
Confidence 4566666 45566665542 22 4699999999999999998876
No 5
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.76 E-value=96 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=27.8
Q ss_pred EEEeeeccCCCCCCchhhHHHHHHHHhCCCcEEEEe
Q 000171 1220 VVSCQLYGIHKRSGDARAQDILKLMTKYPSLRVAYI 1255 (1946)
Q Consensus 1220 VvscQ~Yg~~k~~~d~~A~di~~Lm~~~P~LrVAYi 1255 (1946)
|+++-++-+.+...+.-.+.+..|.+..|+++| +.
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v-~~ 41 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT-YM 41 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE-EE
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHhCCcEEE-EE
Confidence 788888887666555556888999999999987 44
No 6
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.36 E-value=1.5e+02 Score=25.11 Aligned_cols=33 Identities=24% Similarity=0.485 Sum_probs=26.2
Q ss_pred chhhHHHHHHHHhCCCcEEEEeecccCCCCccccccccceEEEE
Q 000171 1234 DARAQDILKLMTKYPSLRVAYIDEVEEPSKDRSKKINQKVYYSA 1277 (1946)
Q Consensus 1234 d~~A~di~~Lm~~~P~LrVAYide~~~~~~g~~~~~~~~~yySv 1277 (1946)
.-+.++|..--+.+..||.|-+||.. |..|+.|
T Consensus 40 tirmeeiaekarnfdelrlavvdees-----------eityfrv 72 (78)
T d1r0va1 40 TIRMEEIAEKARNFDELRLAVVDEES-----------EITYFRV 72 (78)
T ss_dssp CBCHHHHHHHTTTCSSCEEEEECTTC-----------CEEEEEE
T ss_pred eeeHHHHHHHhcCchheeeeeecccc-----------eEEEEEE
Confidence 34568888888999999999999843 5678866
No 7
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.57 E-value=5.5e+02 Score=22.51 Aligned_cols=77 Identities=9% Similarity=0.175 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhcccccccccCcccchHHHHHHHHHHHhhcCcchhhHHHHHHHHH
Q 000171 895 ECYASFRNIIKFLVQG-NEKRVIDDIFSEVDRHIEAGNLISEYKMSSLPSLYDHFVKLIKYLLDNKQEDRDQVVILFQDM 973 (1946)
Q Consensus 895 e~y~~~~~il~~l~~~-~~~~~i~~i~~~i~~~i~~~~~~~~f~~~~Lp~~~~~~~~L~~~L~~~~~~~~~~vv~~l~~l 973 (1946)
|.-+.+...|..+-.+ .+...++.+++.+-.. .. --..+.+..+-.+..++.++++.+.+..-......+..+...
T Consensus 16 e~l~~l~~~l~~le~~~~~~~~~~~l~R~~HTL-KG--~a~~~gl~~i~~lah~lE~~l~~~~~~~~~~~~~~~~~l~~~ 92 (105)
T d1tqga_ 16 EYLQNLNDTLLELEKNPEDMELINEAFRALHTL-KG--MAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 92 (105)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HH--HHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cC--chhhcCHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3344555556555555 6666788888777642 11 123457778888899999999999876533233444444443
Q ss_pred H
Q 000171 974 L 974 (1946)
Q Consensus 974 ~ 974 (1946)
.
T Consensus 93 ~ 93 (105)
T d1tqga_ 93 V 93 (105)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.49 E-value=28 Score=28.74 Aligned_cols=13 Identities=38% Similarity=0.797 Sum_probs=8.9
Q ss_pred ceEecccceeecc
Q 000171 1364 PSILGLREHIFTG 1376 (1946)
Q Consensus 1364 ~~IlG~RE~IFt~ 1376 (1946)
-+=+-+|+||||.
T Consensus 17 s~~~SvrdHiFsk 29 (48)
T d2yrka1 17 SARLSIRDHIFSK 29 (48)
T ss_dssp CSSSCHHHHHTSH
T ss_pred eeecchHhhhhhH
Confidence 3445678999983
No 9
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.02 E-value=64 Score=23.97 Aligned_cols=8 Identities=63% Similarity=0.945 Sum_probs=6.3
Q ss_pred cccceeec
Q 000171 1622 HGGAKYRS 1629 (1946)
Q Consensus 1622 hGGAkYra 1629 (1946)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 68888875
No 10
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=2.6e+02 Score=30.32 Aligned_cols=50 Identities=30% Similarity=0.572 Sum_probs=35.7
Q ss_pred hHHHHhhhhhhHHHHhhcCCCCCCceEecccceeecccchhhhhhcccchhhHHHHHHHhhcC
Q 000171 1340 YMEEALKMRNLLQEFLKKHDGVRYPSILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRLLAN 1402 (1946)
Q Consensus 1340 yleE~lKmrnlL~ef~~~~~g~~~~~IlG~RE~IFt~~v~~La~f~a~qE~sF~Tl~qR~la~ 1402 (1946)
|.+++.+.....++|.... +.+.|-||| .+|++|| || +||....+..|+.
T Consensus 57 ~~~~~~~~~~~~~~fl~~~-~~k~P~iIG-----IaG~sgS------GK-STla~~L~~lL~~ 106 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTN-GQRIPYIIS-----IAGSVAV------GK-STTARVLQALLSR 106 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCEEEE-----EEECTTS------SH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccc-CCCCCEEEE-----EeCCCCC------CC-cHHHHHHHHHHhh
Confidence 4588888888999998655 556778888 5666665 44 6677777777764
Done!