Query 000172
Match_columns 1935
No_of_seqs 396 out of 1493
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 21:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0892 Protein kinase ATM/Tel 100.0 6E-199 1E-203 1950.4 92.7 1730 15-1935 883-2806(2806)
2 KOG0890 Protein kinase of the 100.0 7E-150 1E-154 1481.1 101.3 1510 159-1935 740-2382(2382)
3 KOG0891 DNA-dependent protein 100.0 9E-101 2E-105 1048.9 54.5 1084 669-1935 1129-2341(2341)
4 COG5032 TEL1 Phosphatidylinosi 100.0 1.1E-76 2.3E-81 837.0 63.2 1092 659-1935 907-2105(2105)
5 KOG0889 Histone acetyltransfer 100.0 3.2E-73 6.9E-78 768.3 59.6 961 808-1935 2414-3550(3550)
6 cd05171 PIKKc_ATM Ataxia telan 100.0 1.1E-66 2.4E-71 614.5 28.2 273 1575-1851 1-278 (279)
7 cd05170 PIKKc_SMG1 Suppressor 100.0 3.9E-65 8.4E-70 607.9 27.4 276 1575-1851 1-306 (307)
8 cd05163 TRRAP TRansformation/t 100.0 1.1E-64 2.4E-69 588.1 25.2 247 1575-1851 1-252 (253)
9 cd05169 PIKKc_TOR TOR (Target 100.0 1.6E-64 3.4E-69 598.9 25.3 276 1575-1852 1-280 (280)
10 cd05172 PIKKc_DNA-PK DNA-depen 100.0 2.1E-62 4.5E-67 563.3 25.1 233 1575-1851 1-234 (235)
11 cd00892 PIKKc_ATR ATR (Ataxia 100.0 4.8E-61 1E-65 553.2 25.9 236 1575-1851 1-236 (237)
12 cd05164 PIKKc Phosphoinositide 100.0 1.1E-57 2.4E-62 520.8 25.3 222 1575-1845 1-222 (222)
13 cd00142 PI3Kc_like Phosphoinos 100.0 8.6E-53 1.9E-57 481.5 25.0 218 1576-1845 2-219 (219)
14 cd00891 PI3Kc Phosphoinositide 100.0 6.8E-51 1.5E-55 490.0 31.3 249 1556-1851 48-303 (352)
15 cd00896 PI3Kc_III Phosphoinosi 100.0 1E-50 2.2E-55 487.5 29.8 287 1556-1935 52-350 (350)
16 cd05166 PI3Kc_II Phosphoinosit 100.0 4.3E-50 9.4E-55 481.8 31.3 248 1556-1851 48-304 (353)
17 cd05168 PI4Kc_III_beta Phospho 100.0 6.7E-50 1.4E-54 469.2 22.9 268 1588-1933 15-287 (293)
18 cd05177 PI3Kc_C2_gamma Phospho 100.0 5.5E-49 1.2E-53 469.5 30.0 249 1556-1852 49-306 (354)
19 cd05165 PI3Kc_I Phosphoinositi 100.0 5.8E-49 1.3E-53 471.2 30.3 249 1557-1851 54-316 (366)
20 smart00146 PI3Kc Phosphoinosit 100.0 1.3E-49 2.7E-54 450.3 21.5 199 1605-1853 1-200 (202)
21 cd00894 PI3Kc_IB_gamma Phospho 100.0 9.6E-47 2.1E-51 450.4 30.1 248 1555-1849 53-313 (365)
22 cd00893 PI4Kc_III Phosphoinosi 100.0 3.7E-47 8E-52 445.3 23.7 222 1583-1851 9-238 (289)
23 cd05174 PI3Kc_IA_delta Phospho 100.0 1.5E-46 3.2E-51 448.2 27.0 249 1557-1850 53-310 (361)
24 PF00454 PI3_PI4_kinase: Phosp 100.0 1.7E-47 3.8E-52 443.9 18.4 229 1603-1851 1-234 (235)
25 cd05176 PI3Kc_C2_alpha Phospho 100.0 6.5E-46 1.4E-50 440.7 31.0 248 1556-1850 48-303 (353)
26 cd05173 PI3Kc_IA_beta Phosphoi 100.0 3.8E-46 8.1E-51 446.4 27.9 248 1558-1851 54-311 (362)
27 cd05167 PI4Kc_III_alpha Phosph 100.0 1.9E-45 4.2E-50 433.6 26.7 270 1579-1932 15-304 (311)
28 cd00895 PI3Kc_C2_beta Phosphoi 100.0 3.8E-43 8.3E-48 417.2 30.8 246 1556-1849 49-303 (354)
29 cd05175 PI3Kc_IA_alpha Phospho 100.0 3E-42 6.4E-47 409.8 27.9 247 1557-1850 53-315 (366)
30 KOG0905 Phosphoinositide 3-kin 100.0 1.2E-34 2.6E-39 362.1 26.2 416 1368-1852 858-1299(1639)
31 KOG0906 Phosphatidylinositol 3 100.0 6.9E-34 1.5E-38 341.1 26.8 418 1367-1857 308-795 (843)
32 KOG0904 Phosphatidylinositol 3 100.0 6.2E-33 1.4E-37 341.7 26.8 413 1368-1851 579-1027(1076)
33 PF02259 FAT: FAT domain; Int 100.0 1.2E-32 2.6E-37 336.9 29.0 316 986-1393 1-352 (352)
34 KOG0902 Phosphatidylinositol 4 100.0 5.7E-28 1.2E-32 308.7 29.2 388 1401-1858 1349-1758(1803)
35 KOG0903 Phosphatidylinositol 4 99.9 2.4E-25 5.1E-30 273.7 19.4 197 1601-1844 585-786 (847)
36 PTZ00303 phosphatidylinositol 99.9 1.1E-23 2.3E-28 254.7 14.8 165 1589-1811 1026-1201(1374)
37 KOG0892 Protein kinase ATM/Tel 99.5 4.8E-13 1E-17 183.3 24.0 578 53-836 1131-1757(2806)
38 PF02260 FATC: FATC domain; I 99.2 1.9E-12 4.2E-17 102.9 1.3 33 1903-1935 1-33 (33)
39 TIGR02917 PEP_TPR_lipo putativ 95.2 1.9 4.2E-05 59.2 24.8 186 812-1049 570-764 (899)
40 smart00145 PI3Ka Phosphoinosit 93.9 0.18 3.9E-06 57.2 8.2 98 1367-1470 43-155 (184)
41 cd00870 PI3Ka_III Phosphoinosi 92.8 0.3 6.4E-06 54.5 7.6 102 1367-1468 45-162 (166)
42 cd00864 PI3Ka Phosphoinositide 92.2 0.53 1.1E-05 51.9 8.5 95 1368-1468 39-148 (152)
43 cd00872 PI3Ka_I Phosphoinositi 91.9 0.23 4.9E-06 55.6 5.3 97 1367-1469 38-149 (171)
44 TIGR02917 PEP_TPR_lipo putativ 89.0 1.1E+02 0.0024 42.1 40.3 85 813-911 299-392 (899)
45 PF00613 PI3Ka: Phosphoinositi 88.2 0.71 1.5E-05 52.5 5.5 97 1368-1470 45-156 (184)
46 PLN03081 pentatricopeptide (PP 87.9 1.1E+02 0.0025 41.9 27.4 290 858-1223 260-557 (697)
47 cd00869 PI3Ka_II Phosphoinosit 87.6 0.98 2.1E-05 50.5 5.9 96 1367-1469 38-149 (169)
48 PRK15174 Vi polysaccharide exp 86.8 87 0.0019 42.9 25.0 65 1157-1224 284-348 (656)
49 PRK11788 tetratricopeptide rep 86.2 1E+02 0.0022 38.6 27.6 94 1160-1260 252-348 (389)
50 PLN03218 maturation of RBCL 1; 84.4 79 0.0017 45.5 23.3 120 811-972 439-568 (1060)
51 PLN03218 maturation of RBCL 1; 83.9 64 0.0014 46.5 22.1 122 811-972 474-605 (1060)
52 PRK10747 putative protoheme IX 82.3 61 0.0013 41.4 19.5 56 1159-1218 330-385 (398)
53 PRK11447 cellulose synthase su 79.0 3.5E+02 0.0077 39.7 30.3 79 1159-1243 463-541 (1157)
54 PRK15174 Vi polysaccharide exp 75.7 2.7E+02 0.0059 38.2 23.5 63 1158-1224 319-382 (656)
55 KOG1129 TPR repeat-containing 74.5 38 0.00082 41.4 12.7 86 813-913 227-321 (478)
56 PF13575 DUF4135: Domain of un 74.2 24 0.00051 44.7 12.1 111 1599-1786 68-178 (370)
57 PLN03077 Protein ECB2; Provisi 70.9 4.6E+02 0.0099 37.1 25.1 88 810-910 390-483 (857)
58 TIGR02906 spore_CotS spore coa 69.9 59 0.0013 39.6 13.9 30 1752-1783 185-214 (313)
59 cd00871 PI4Ka Phosphoinositide 69.7 10 0.00022 42.8 6.5 64 1400-1471 83-149 (175)
60 PRK11447 cellulose synthase su 67.9 6E+02 0.013 37.4 29.7 115 812-971 388-520 (1157)
61 PLN03081 pentatricopeptide (PP 64.7 2E+02 0.0043 39.6 18.8 281 812-1185 262-556 (697)
62 cd05145 RIO1_like RIO kinase f 59.4 11 0.00025 42.6 4.6 48 1759-1830 142-189 (190)
63 PF12688 TPR_5: Tetratrico pep 58.3 25 0.00053 37.4 6.5 58 888-972 7-64 (120)
64 TIGR00540 hemY_coli hemY prote 56.9 2.3E+02 0.005 36.3 16.3 86 810-910 119-215 (409)
65 PF14559 TPR_19: Tetratricopep 56.2 17 0.00037 33.5 4.4 53 894-976 3-55 (68)
66 cd05147 RIO1_euk RIO kinase fa 53.7 7.8 0.00017 44.2 2.1 25 1759-1785 142-166 (190)
67 KOG0608 Warts/lats-like serine 53.1 11 0.00023 49.3 3.2 40 1745-1785 739-778 (1034)
68 PLN03077 Protein ECB2; Provisi 52.7 8.8E+02 0.019 34.3 27.4 137 812-1000 225-371 (857)
69 KOG3365 NADH:ubiquinone oxidor 51.6 8.9 0.00019 40.9 1.8 38 1887-1934 92-129 (145)
70 KOG1840 Kinesin light chain [C 51.4 4E+02 0.0088 35.4 17.0 94 1150-1256 359-453 (508)
71 TIGR03843 conserved hypothetic 50.9 13 0.00028 43.7 3.2 45 1745-1790 134-178 (253)
72 PF04781 DUF627: Protein of un 49.8 51 0.0011 34.6 6.9 62 1200-1262 2-65 (111)
73 KOG0616 cAMP-dependent protein 49.1 11 0.00023 45.6 2.2 57 1748-1809 153-217 (355)
74 COG5032 TEL1 Phosphatidylinosi 47.9 1.5E+03 0.033 35.7 26.6 108 859-1001 1125-1234(2105)
75 PF13176 TPR_7: Tetratricopept 47.5 26 0.00056 28.8 3.6 26 886-911 3-28 (36)
76 PF13429 TPR_15: Tetratricopep 46.4 27 0.00057 42.1 5.2 88 811-914 80-178 (280)
77 cd05151 ChoK Choline Kinase (C 44.6 17 0.00036 39.8 2.8 30 1753-1784 106-135 (170)
78 KOG3087 Serine/threonine prote 42.1 1E+02 0.0023 35.5 8.3 28 1759-1786 137-166 (229)
79 PRK14879 serine/threonine prot 41.9 40 0.00088 38.4 5.6 24 1758-1783 118-141 (211)
80 TIGR00990 3a0801s09 mitochondr 41.9 4.5E+02 0.0098 35.6 16.3 218 812-1084 334-563 (615)
81 PF08424 NRDE-2: NRDE-2, neces 41.3 1.5E+02 0.0032 36.9 10.7 95 1116-1223 82-183 (321)
82 PF13414 TPR_11: TPR repeat; P 40.1 59 0.0013 30.0 5.4 51 886-966 7-58 (69)
83 TIGR03724 arch_bud32 Kae1-asso 39.2 22 0.00048 40.1 2.8 24 1758-1783 113-136 (199)
84 KOG1126 DNA-binding cell divis 38.9 1E+03 0.022 32.3 17.6 54 1363-1417 536-589 (638)
85 COG0661 AarF Predicted unusual 38.3 20 0.00043 47.3 2.5 44 1613-1666 206-251 (517)
86 TIGR02521 type_IV_pilW type IV 37.4 3.5E+02 0.0075 30.1 12.2 85 812-910 34-127 (234)
87 PF02985 HEAT: HEAT repeat; I 36.7 15 0.00032 29.3 0.6 22 1-22 8-29 (31)
88 cd05144 RIO2_C RIO kinase fami 34.8 29 0.00064 39.4 2.9 31 1756-1787 146-176 (198)
89 PRK10359 lipopolysaccharide co 34.7 24 0.00052 41.8 2.2 23 1759-1783 159-181 (232)
90 PF13429 TPR_15: Tetratricopep 34.4 1.4E+02 0.003 35.9 8.7 88 812-913 149-245 (280)
91 PRK04750 ubiB putative ubiquin 34.3 22 0.00048 47.1 2.0 25 1758-1783 283-311 (537)
92 PF13432 TPR_16: Tetratricopep 34.3 72 0.0016 29.1 4.9 53 888-970 3-55 (65)
93 cd04792 LanM-like LanM-like pr 34.0 3.7E+02 0.0081 37.9 14.0 107 1600-1786 112-218 (825)
94 TIGR01982 UbiB 2-polyprenylphe 33.2 50 0.0011 42.9 4.9 25 1758-1783 280-304 (437)
95 KOG1155 Anaphase-promoting com 33.2 6.4E+02 0.014 32.9 13.8 160 1200-1414 336-495 (559)
96 cd05119 RIO RIO kinase family, 33.2 29 0.00063 38.7 2.5 26 1758-1785 138-163 (187)
97 KOG1006 Mitogen-activated prot 33.0 29 0.00063 41.4 2.4 59 1759-1818 192-268 (361)
98 PF02985 HEAT: HEAT repeat; I 32.6 37 0.00079 27.0 2.3 29 573-601 1-29 (31)
99 PRK10219 DNA-binding transcrip 32.2 2.7E+02 0.0058 28.5 9.2 98 102-212 3-101 (107)
100 PF01636 APH: Phosphotransfera 31.5 31 0.00066 39.4 2.4 32 1752-1783 164-195 (239)
101 smart00090 RIO RIO-like kinase 31.3 34 0.00074 40.5 2.8 28 1758-1787 172-199 (237)
102 TIGR02521 type_IV_pilW type IV 31.3 4.6E+02 0.01 29.1 11.9 86 813-912 69-165 (234)
103 TIGR02795 tol_pal_ybgF tol-pal 30.8 2.9E+02 0.0063 27.7 9.2 84 1159-1242 4-87 (119)
104 PF13432 TPR_16: Tetratricopep 30.7 1.5E+02 0.0033 27.0 6.5 60 1162-1224 2-61 (65)
105 PRK09550 mtnK methylthioribose 29.8 3.5E+02 0.0077 34.8 11.5 30 1753-1784 222-251 (401)
106 PF01163 RIO1: RIO1 family; I 29.7 28 0.0006 39.9 1.6 45 1759-1810 131-175 (188)
107 TIGR02795 tol_pal_ybgF tol-pal 28.2 2E+02 0.0043 28.9 7.5 58 887-971 7-64 (119)
108 PF00515 TPR_1: Tetratricopept 27.3 86 0.0019 24.8 3.6 27 887-913 6-32 (34)
109 KOG0603 Ribosomal protein S6 k 27.3 38 0.00082 44.8 2.3 41 1746-1786 426-466 (612)
110 PLN03088 SGT1, suppressor of 25.9 2.6E+02 0.0057 35.2 9.4 87 813-913 6-101 (356)
111 PF07719 TPR_2: Tetratricopept 25.6 93 0.002 24.3 3.5 27 887-913 6-32 (34)
112 PF12895 Apc3: Anaphase-promot 25.4 2E+02 0.0044 27.8 6.6 73 823-907 3-83 (84)
113 PRK12274 serine/threonine prot 25.3 52 0.0011 38.6 2.8 25 1759-1784 115-140 (218)
114 PF13371 TPR_9: Tetratricopept 25.2 2.7E+02 0.0059 25.8 7.2 59 1165-1226 3-61 (73)
115 PRK01723 3-deoxy-D-manno-octul 24.9 50 0.0011 39.2 2.6 26 1758-1784 165-190 (239)
116 COG3642 Mn2+-dependent serine/ 24.4 58 0.0013 37.4 2.8 24 1759-1784 116-139 (204)
117 PF14559 TPR_19: Tetratricopep 24.3 72 0.0016 29.3 3.0 55 1168-1225 2-56 (68)
118 cd05156 ChoK_euk Choline Kinas 24.2 83 0.0018 38.3 4.5 33 1751-1783 176-211 (302)
119 PRK10370 formate-dependent nit 23.9 4.5E+02 0.0098 30.3 10.1 76 1157-1238 73-151 (198)
120 PF13371 TPR_9: Tetratricopept 23.5 1.6E+02 0.0035 27.3 5.3 53 890-972 3-55 (73)
121 PRK15180 Vi polysaccharide bio 23.4 1.2E+02 0.0027 38.7 5.5 149 808-1000 249-408 (831)
122 PRK15359 type III secretion sy 23.3 2.5E+02 0.0053 30.5 7.4 51 886-966 62-112 (144)
123 TIGR02552 LcrH_SycD type III s 23.2 3.1E+02 0.0067 28.6 8.1 88 812-913 20-116 (135)
124 KOG0594 Protein kinase PCTAIRE 23.2 57 0.0012 40.3 2.7 28 1759-1787 144-171 (323)
125 cd05120 APH_ChoK_like Aminogly 22.9 66 0.0014 33.4 2.9 25 1759-1784 113-137 (155)
126 PRK11788 tetratricopeptide rep 21.9 1.6E+03 0.034 27.9 28.1 63 1159-1224 109-171 (389)
127 cd05154 ACAD10_11_like Acyl-Co 21.8 65 0.0014 36.6 2.7 32 1752-1783 172-204 (223)
128 PF13424 TPR_12: Tetratricopep 21.3 1.7E+02 0.0038 27.6 5.1 46 885-960 8-53 (78)
129 PF06176 WaaY: Lipopolysacchar 20.9 75 0.0016 37.6 2.9 22 1759-1782 159-180 (229)
130 PF13174 TPR_6: Tetratricopept 20.7 1.1E+02 0.0024 23.7 3.0 26 888-913 6-31 (33)
No 1
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.9e-199 Score=1950.38 Aligned_cols=1730 Identities=30% Similarity=0.386 Sum_probs=1363.1
Q ss_pred HHhhhccccccCCcch-------------HHhHHhhccCeEEEeecccccChhhhhhcCCCCchhHHHHHHHHHHHHhcC
Q 000172 15 RRIGVLFQTWDGHGEL-------------FQDICSNFGVVLVVCSNEKLVTAKEALASGPQSRPKMETIIITLMHLALQS 81 (1935)
Q Consensus 15 ~~~~~lf~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~la~~~~~s 81 (1935)
.++..+|++-+|..+. |+++|.+++.+|.-.+. ...+.+..++..+++- ..+..++++.-++
T Consensus 883 ~sa~~~~~~~~~~~S~~~f~~~~qil~~~~~~~y~~i~~~l~~msf--~~~~~~~~d~~~l~~~---~~~~~i~~~s~~~ 957 (2806)
T KOG0892|consen 883 HSAIGAYILDVAYGSESIFLKALQILNSDILMNYDSIRSELYDMQF--IGSLQKCVDSNLLFSI---LQSKLIVKISERF 957 (2806)
T ss_pred hhhccchhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--hhhcchhHHHHHHHHH---HHHHHhhhhcccc
Confidence 6777788887776665 99999999999988888 6788999999999999 9999999999999
Q ss_pred cchhhHHHHHHHHhhhhcCChHHHHHHHHHHhhhhccccChHHHHHHhHhHHHHHHHhcC---ccchhhHhHHhhhcCCC
Q 000172 82 ESVELEAVFMMCTVSALYPCQRELVNVALDNLSQQLQYTTRWKYLEELLGPILFCWVACG---VSLIALVEIRRLFVSDA 158 (1935)
Q Consensus 82 ~~~e~~~~f~~~~~~~~~~~~~~l~~~vl~~~~~~~~y~~~~~~~~~~l~~l~~~w~~~~---~sl~~~~~~~~l~~~~~ 158 (1935)
+.|++++ |+..|...+..+.+|....+++.+|+.+++. |...+ +. .+||.+ +..| .
T Consensus 958 ~~~r~q~----------------l~~fik~~~~~t~~~~i~~~~s~ssl~~~~l-~~~v~~i~~~-~d~~~~--~~~~-~ 1016 (2806)
T KOG0892|consen 958 GKRRIEN----------------LETFIKFIFDYSPTSWINIKDSYQSLSSAPL-DSDVGVIYNF-DDLYLL--EKKC-D 1016 (2806)
T ss_pred hhHHHHH----------------HHHHHHHHHhcchhhHHhhhhhhhhhhhhhh-hhhcceeecc-cchHHH--hcch-h
Confidence 9999999 8999999999999999999999999999999 98865 33 678777 5556 8
Q ss_pred ChHhHHHHhhhhhhhHHHhcCCccchHHHHHHhCCcHHHHHhhhchhHH-HhhhhccccCCCchHHHHHHHHHhHHhhhh
Q 000172 159 EPCNFVQYCCHWLLPALVLHADTSNLNWMAKIAREPLADLVKNHFVPIF-SISMAWHCSERSDSELGALVLQSSILHLAE 237 (1935)
Q Consensus 159 ~~~~f~~~~~~~l~p~l~~~~~~~~~~~~a~~~~~~~~~l~~~~f~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1935)
....|++.|.-..+|+.+.+....++..++-..-.+|..+...+|+.+. .+.+++..-... -..|.+.+...
T Consensus 1017 ~~~~~~~~~~~~~i~v~~~~~~~~~~~l~s~~v~~~~~~~~~~~~~~l~k~~~~~~~~~~T~-~~~~l~~e~a~------ 1089 (2806)
T KOG0892|consen 1017 ITIIEAFFLPIPSLKVSKSLYKGFCYLLESCFVFSLINSTRSFLYYQLLKLANSYETENITE-LLDKLHIENAL------ 1089 (2806)
T ss_pred hhHHHhhhcccchhhhhhhhcccceehhhhhhhhhhhhccHHHHHHHHHHhhhHHHHHHHHH-HHHHHHhhhhh------
Confidence 8999999999999999999999999999999999999999999999999 666666543332 22222222222
Q ss_pred ccHHHHHHHHHHhhHHHHHHHHHh-c----------------cc------CCCCCCCccchhhhhhhhhhhhcccccc-c
Q 000172 238 ISEIERDKLIKKHLVSIVSHIISL-A----------------SC------TSDPAVPYFSRDTIVHAVRTVVDGFLEM-Q 293 (1935)
Q Consensus 238 ~~~~~~d~l~~~~~~~iv~~ll~~-~----------------~~------~~~p~pp~f~~~~~~~~i~~~~d~~~~~-~ 293 (1935)
.++.+-.|..+ .|||+|+|+ + |+ ++.|+||+|++++| +||+.|+++| +
T Consensus 1090 --~k~d~i~~~l~--~ivv~L~~lLhe~anS~~s~s~Dic~fsG~~~~el~~~p~p~~F~~~vI----~t~~~~is~~~k 1161 (2806)
T KOG0892|consen 1090 --IKQDLIIYFLN--IIVVALSKLLHEPANSRLSFSTDICSFSGSDFLELDAAPIPPHFPLTVI----ITLFHLITNNHK 1161 (2806)
T ss_pred --HHHHHHHHHHH--HHHHHHHHHhhcccccccccccchHhhcccchhhcCCCCCCcchhHHHH----HHHHHHHhccch
Confidence 23333333333 999999994 2 22 33499999999877 9999999999 8
Q ss_pred CCC-cccceecccccCCchhHHHHHHHHHHHHHHhhhcccchhhhhhHHHHH---------HhcCCcce-ecchhHHHHH
Q 000172 294 DCP-RSAGVVDKINVFRPDRVFMFIVELHYKIAAAVHHRHKCHRLAGVEVLI---------NVLGHRAA-VSSASNYLFN 362 (1935)
Q Consensus 294 ~~~-~~~~~~~k~~~~~pd~i~~~Ll~~~~~~~~~~~~~~~~h~l~~~~~l~---------~~lg~~~~-~~~~~~y~~~ 362 (1935)
++. +...+++| +||+.|+++|+||...+++ .+.||+||+..+|+++ +||||.|+ |.+ ||
T Consensus 1162 ~~Lqs~~eils~----S~~s~~~ieL~i~~l~~~s-n~v~~k~ri~~l~~ll~~ll~~~i~Sgl~~ags~v~~-----I~ 1231 (2806)
T KOG0892|consen 1162 TKLQSYLEILSV----SPDSYQKIELIIDILAAES-NNLHKKHRIKYLYHLLASLLCKDILSGLSELGSTVLS-----IY 1231 (2806)
T ss_pred HHHHHHHHHccc----CCcchhhHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-----HH
Confidence 887 55599999 8999999999999999999 5999999999999843 89999888 777 45
Q ss_pred hhhhhccccC---------hhhhHHHHHHHHHhh-hcCCCchhhhhhhhccccceeeccccccccCCCCCCcccchhhHH
Q 000172 363 LVGQFIGVYA---------LQDQCCRIVSALLKA-FRDNPSKEIVNVLGEQLQFLVSKLVACCIPSEANEPSVSRSSQVL 432 (1935)
Q Consensus 363 ~l~~~i~~~~---------l~~~Cc~ll~~~~~~-~~~~~~~~~~~~l~~~L~~iv~~lv~~~~~~~~~~~~~~~~~~~~ 432 (1935)
+++|||+.++ +.+.||++.+.||++ +.+ |.+.++.|.++++++++... .+...|.+
T Consensus 1232 ~l~hyI~p~l~~~mDvs~~s~t~~~~i~~~V~qt~v~y-----~~~~~~N~~~~~~~~~~~~~---------~~l~~~~l 1297 (2806)
T KOG0892|consen 1232 FLSHYINPRLTIFMDVSIMSFTNSCDIPSFVLQTVVWY-----CGRLFENLEHFSSIPFSSVV---------IDLVKQRL 1297 (2806)
T ss_pred hhHHhcCcccccccchhhhhccccccHHHHHHHHHHHH-----HHHHHhhhhhhhhccchhhe---------ehhhhhhH
Confidence 9999999875 358899999999999 767 99999999999999963333 24788889
Q ss_pred hhhhHhhcCC--CccHHHHhhhcCCCCCChhhHhHHHHHHHhh---ccCChHHHHHHHhhhccCCcc-------ccccc-
Q 000172 433 SLLLQLTVDS--DPSLHDYIRELEPFPEIDIFDGIRSFHEELC---QAYSARDHLLKFVQRACNLPS-------RLLPW- 499 (1935)
Q Consensus 433 ~lL~~lvv~~--~~~L~~~i~~L~pfPd~~~fk~~r~~~~~~~---~~~sl~~ei~~fl~~~~~l~~-------~l~~~- 499 (1935)
-...+.++|+ ++.+...|..+.| |+++.|+.++.+.+.+| +.++..+|+++||+.+..-+. .+.++
T Consensus 1298 ~~~~~~~~d~~kn~~i~~~~~lf~~-~~~~~~~~~~~~~~~~~~tr~~~s~l~~~~~lL~~~~~~~~~~~~~~~~f~~l~ 1376 (2806)
T KOG0892|consen 1298 AIGKLFATDEEKNETISFRICLFLP-FSDTFIFSNYRLMIHLRITRQHLSALTELSLLLGIARFHLKKLKPSFTDFDKLF 1376 (2806)
T ss_pred HHHHHHhhhhhhcchhhhhhhhccC-chhHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccccCcccchHHHHH
Confidence 9999999997 5889999999999 99999999999999998 588999999999998766221 23333
Q ss_pred ----------------ccccCCCCchhHH-HHHHHHHhhcCCCCCcceeecCCCccccccc---cc-c---cc-------
Q 000172 500 ----------------RWFVTPNDASSIR-AWVSDFISRVGIGDPHCVVFHLPRDSIYMHA---CR-P---IN------- 548 (1935)
Q Consensus 500 ----------------~~~~~~~~~~~~~-~lv~~ll~~~~~~~~h~~~f~~~~~~~~~~~---cl-~---~~------- 548 (1935)
.+...+.++++.. ++++.|++..+... ...+.+++-++ |+ + |+
T Consensus 1377 ~l~~~c~~~~~~~~~~~~a~~~~~~~~~~~~~~vNLl~~~~~~~------~~~~~k~i~e~~~s~~~~~~~v~vs~~~~~ 1450 (2806)
T KOG0892|consen 1377 SLARQCCDFKGFCYDTIKAMEDIQDFGTWKKGYVNLLLNFEYEG------DGFLREQIRELRSSMTGKNDWVDVSNKLRE 1450 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHhhhcc------cchHHhHHhhhhccccCCcchhhhhhHHHH
Confidence 1224566777777 68889988877664 55555665554 33 2 22
Q ss_pred CCC--CCccccccccccccchHHHHHHHHHHHHhhccCCccccchHHHHHHHHhcc-cccCchhcchhhhhhHHHHHhhc
Q 000172 549 HGS--GSATEFNFHLDAGISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILST-EKGQRAVMSFDSYERSLLEVHSK 625 (1935)
Q Consensus 549 ~~~--~~~~~~~~~~~~~~~~~~~~~iL~~L~~~L~~~~~~~~~~a~~~L~~ils~-~~g~~~~~~~~~~~~~~~~~~~~ 625 (1935)
++. ++..+.++..++.+ ++.+.++.+++++|...+.+++..+-+++.+++.+ ..+..+| +.+..
T Consensus 1451 ~~~~~~~~~~lkl~~~~~L--~~~~~~~~~~~n~l~~~c~k~~~~~~~~~~n~~~s~~t~~~~~-----------q~~~e 1517 (2806)
T KOG0892|consen 1451 RSARISMNNLLKLYFWTVL--DAHFRKVLHSLNLLFWKCYKARSRELQDLHNKLFSTDTMGWFW-----------QKSPE 1517 (2806)
T ss_pred HhccccCCcHHHHHHHHHH--HHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHhhhhhhhHH-----------hcCcc
Confidence 221 35566666655555 66788999999999999999999999999999877 6677664 33333
Q ss_pred CCcHHHHHHhhhhhhhhhh-h--hhc-ccccCCCCCCCCcccccCC----CChhhhHHHHHHHhh--ccCCchhhHhhHH
Q 000172 626 GVNVELVETFLLDLERKFK-V--FWV-SLSANGISPEKSTVWETDG----KTFETWICPLTYSLI--GCCNDVVLRLCQD 695 (1935)
Q Consensus 626 ~~~~~l~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~~W~~~~----~s~~eWir~Ls~~Ll--~~s~s~~Lr~c~~ 695 (1935)
.+++.. ++..++++... . .+. .........++-.+|.... .+++.|++.+...-. .+..+.++.+..+
T Consensus 1518 ~v~~~~--~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~~~~~~~n~~~~~K~~i~~~dk~ 1595 (2806)
T KOG0892|consen 1518 IVDLVH--YYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIRMFFEGSNIMELTKNLIFPLDKI 1595 (2806)
T ss_pred ceechh--hcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhhhccccchhhhhhhhhccchhHH
Confidence 444443 33333331111 0 000 1222334567888898877 779999998887654 4677889999999
Q ss_pred HHhccHHHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhhcch-------------hhHHHHHHHHHHHHHHHHHH
Q 000172 696 IVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESN-------------KLIKSIQVFLNALNELRLCH 762 (1935)
Q Consensus 696 L~~~~~~~Ae~LfP~~~~~~~~e~d~~~~~~~~Ls~~~~~~~~~~s~-------------~~~~~iq~~l~~~~~lR~~~ 762 (1935)
++....+++....|+.+++++.+ +.++.+.+.++...+.-+..+.. ......+.+..+|..
T Consensus 1596 ~~~~~~~~~~~~~~~~~~~il~~-t~~es~s~w~s~~~ls~f~~c~~~~~~~~~st~~~~~~t~i~~~i~~~l~~----- 1669 (2806)
T KOG0892|consen 1596 TLDSFLKTLVSEEGSFIIDILQQ-TNNESLSNWLSEFALKLFNMCGRSSTTHSLSTYMANFSTSICQLIICLLLL----- 1669 (2806)
T ss_pred HHHHHHHHHhhccchhHHHHHhh-hhccchhhHHHHHHHHHHHHHhccCCchhhccccccccHHHHHHHHHHHHh-----
Confidence 99999999999999999998755 35666666666654442211110 011122222222110
Q ss_pred HhhccCCCCCCccccccccccCccccchhh-ccccccccccccccccccCHHHHHHHHHHhcchHHHhhhhHhhhhhhh-
Q 000172 763 VMERSSSVPPKRETIGVMQFNGRYSKDVVA-TSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHY- 840 (1935)
Q Consensus 763 ~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~wL~Id~~~lA~aA~~C~AyatALly~E~~~~e~~- 840 (1935)
+. +.|.+ +....++-.+ .-+++..+..+..+|+++++..+++.+++|+++..+..|.|+...+..
T Consensus 1670 --~s--~~~~~---------~~~~~~~yi~~~~~~sl~~n~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 1736 (2806)
T KOG0892|consen 1670 --ES--DFNPG---------NNLKQKDYIFELILSSLLKNSNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVA 1736 (2806)
T ss_pred --hc--cccHH---------HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHH
Confidence 00 10100 0000011000 012333344455689999999999999999999999999999876541
Q ss_pred ----------ccc----cCCCCC-CCccCCcchHHHHHHHHHhhCCCchhhhhhhhccchh-hHHHHHHhhCCHHHHHHH
Q 000172 841 ----------KSL----TLGSPD-FSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLS-SQIVTLEHEGNWSKALEY 904 (1935)
Q Consensus 841 ----------~~~----~~~~~~-~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~~l~-~~i~~yE~eg~W~kAL~~ 904 (1935)
+.. +..+++ .++.+.....+|+|.++|+.|++||++||+.....++ .++..|||+++|.+||..
T Consensus 1737 ~~~~~~~~~~e~s~~~~t~~~~k~k~~e~~~~~lqDil~~~y~~I~~pD~lyG~~~~~~~~~~~l~~~~he~~w~~aL~~ 1816 (2806)
T KOG0892|consen 1737 ASTAYDCLLFEYSLLSLTIHSPKNKRDELDITLLQDILKKAYESINCPDALYGIKRPTSLKNLILITAEHEKNWPRALSY 1816 (2806)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHhhCCCcchhcccCCcccccccccchhhhhhhHHHHHHh
Confidence 000 001111 1112223345677777799999999999999877777 689999999999999999
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHhhhcccccCCCCCCch
Q 000172 905 YELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPE 984 (1935)
Q Consensus 905 Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gL~~s~~~~~~~~~ 984 (1935)
||..-. .|+ ..+..|.+++|++.|+.|++..|++|++... ..+.++
T Consensus 1817 ~d~~~~------------------~~s--------------s~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~--~~~~~~ 1862 (2806)
T KOG0892|consen 1817 YDLADM------------------YPS--------------SEDEAGFINSLQNAGFFHILEFYIDGLKSND--KIDEPS 1862 (2806)
T ss_pred hcchhh------------------ccc--------------hHhHhHHHHHHHHhcchhHHHHHhcChhhhh--hhhhhh
Confidence 998742 333 1235899999999999999999999998876 566778
Q ss_pred hhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 000172 985 FTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTE 1064 (1935)
Q Consensus 985 ~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~~i~~aR~~l~~eLsa~s~ES~~ 1064 (1935)
..+..|++|||+|+||...+++-. .....+..||..+|.+++|+++++++++..+++.+|+..+..++..+.|+..
T Consensus 1863 ~~e~~Ye~awr~g~Wd~~t~~~~~----~~~~~~~~y~e~~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~ 1938 (2806)
T KOG0892|consen 1863 NEELVYEAAWRLGKWDILTLSLVD----QNKTKGDYYHESLFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSL 1938 (2806)
T ss_pred hhhhhHHHHHhcCCcccCCcchhh----hhhhhchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHH
Confidence 888999999999999976543211 1456678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000172 1065 YIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRR 1144 (1935)
Q Consensus 1065 r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~e~~epiL~~R~ 1144 (1935)
..|+.+.+||.+.+||.+.++.+++.. ......+...|+.-++.....++..+-....+.
T Consensus 1939 ~~y~~l~~L~~l~~l~~i~~l~~~~~~--------------------~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n 1998 (2806)
T KOG0892|consen 1939 SFYATLYDLQFLVTLEPIRCLQSTADK--------------------HQSNTDILQKWKTNLQLSSQLMECLSLLIEDRN 1998 (2806)
T ss_pred HHHHHHHHHHHHhhhhhhHhhhhhhcc--------------------hhhhhHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 999999999999999999998773210 111233445555555544444444443333333
Q ss_pred HHHHhccch--------hHH----HHHHHHHHHHHHhcCChHHHHH-------HHHHhhhccccccccCCCchHHHHHHH
Q 000172 1145 VLLQILSCK--------DFT----MQHLLESASTLRKGFRLSQAAA-------ALHELKCSIFHMIIEQSPLPHLLNLLR 1205 (1935)
Q Consensus 1145 ~vl~il~~~--------e~~----~~~wl~~A~laRKag~~~~A~~-------aL~~l~~l~~~~~i~q~~l~~~Ak~LW 1205 (1935)
.++.....+ +.. .-+.+....++|+....+.-.+ ...+.+.+.. -+.|+..|
T Consensus 1999 ~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~~~~~~~~---------~s~aq~~~ 2069 (2806)
T KOG0892|consen 1999 VLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIMLSIKLLCK---------FSLAQENL 2069 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHHHHHHHhh---------hhhhhhhc
Confidence 332221111 110 1111222333333333222222 1222221110 00233333
Q ss_pred HCCCh-------------HHHHHHHHHHH-hhccCCCchhHHHHHHhHhHHHhhcCChHHHHHhhhchhcccccccccch
Q 000172 1206 AQGQH-------------EMAINLAKYIS-ENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTD 1271 (1935)
Q Consensus 1206 ~~Ge~-------------~~Ai~~Lq~l~-~~~~~~~~~a~ll~llG~wlaet~~e~~~~I~~~Y~~~Av~~~e~~~~~~ 1271 (1935)
+++.. .+++-.+.... ++........+.++.+|+|++|++++++..|+++|+++|+..++......
T Consensus 2070 k~~~~~~~e~iL~~~~~kne~~~~~s~~~~~~~~lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ae~~d~e~ 2149 (2806)
T KOG0892|consen 2070 KHDIDKLSEAILWQRDEKNEAIISLSESLAKNNSLKEFPSDIYAVLGKWLAETKSENSALISEKYLEKAVSLAEHYDNES 2149 (2806)
T ss_pred cchhhhhHHHHHHHHHhhhhHHHHHHhhhhhcchhhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhhhcchhH
Confidence 33322 22222222112 22222244578999999999999999999999999999998877662222
Q ss_pred -hhhHHHHhhhhhhHHHHHHHHHhhHHHHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHhh
Q 000172 1272 -KKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAM 1350 (1935)
Q Consensus 1272 -~~~~~~~~~~~~~lA~f~D~~~q~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~y~~~~~~l~~~~~l 1350 (1935)
+........+++++|+|.|.+|+.+++|+++.+|+.++++++.+.++++.+.++.... + +.+..+.++++.+
T Consensus 2150 ~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~----~---~~~~~~~~rq~~l 2222 (2806)
T KOG0892|consen 2150 CKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQM----R---KNHHVRVQRQLIL 2222 (2806)
T ss_pred HHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHH----H---HHHHHHHHHHHhc
Confidence 2233345789999999999999999999999999999999999999988765443221 1 1344567899999
Q ss_pred cHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCccHHHHHHHHHhhhcccccchhhhhHHHHhh
Q 000172 1351 DREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASR 1430 (1935)
Q Consensus 1351 D~~e~~~l~~~r~~fl~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~~~~v~~~~~~~~~~vp~~kfl~~lpQL~sr 1430 (1935)
|++++++++.+|++||..|++||++|+..|++|+.+.++|+|+|||++++..++++.|.+.+.+||+|||+||++||+||
T Consensus 2223 De~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaR 2302 (2806)
T KOG0892|consen 2223 DEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAAR 2302 (2806)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccHHHHHHHHHHHHHHhCCchhHHHHHHhccccc-hhhhhccccchhhhhhHHHHHHHHHHHHHhhHHHH
Q 000172 1431 MGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR-IKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAI 1509 (1935)
Q Consensus 1431 L~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~L~a~~~s~~-~~~~~r~~~~~~v~~~r~~aa~~il~~l~~~~~~~ 1509 (1935)
|+. .++..||+.|..|+.+++++||||++|+|+++.+..+ .++..++|.+ ++.+|..+|+.++.......+.+
T Consensus 2303 l~~----~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~s--l~~~rki~a~l~~~~v~~~~~~~ 2376 (2806)
T KOG0892|consen 2303 LGN----SENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGS--IDRDRKIAAELDLCDVNQGAGNM 2376 (2806)
T ss_pred hcc----ccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccc--cchhHHHHHHHhhhHhhccchhH
Confidence 993 2457899999999999999999999999999998776 5666777765 78899999999999988899999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccc-ccchhhhhh--ccccccccccccccCCCCCCcccCCCccccccccceEEEec
Q 000172 1510 IRQMKQMVDVYIKLAELETRREDTNKR-IQLPREIRC--LRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMN 1586 (1935)
Q Consensus 1510 ~~~~~~l~~~~~~La~~~~~~e~~~~~-~~~~~~l~~--l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~~~~~v~~ 1586 (1935)
+++++.+|++|+.||+.++...++..+ +.+|..... ..+++.+|+||+.+++++++.| |..|+|++|.++|.+++
T Consensus 2377 v~~v~~lc~~yI~lAnl~~~q~~t~~k~v~~p~~~~~~K~~nl~~v~~pT~ev~v~~s~~~--~~~p~i~s~~~~v~~~~ 2454 (2806)
T KOG0892|consen 2377 VRQLECLCEAYISLANLKTSQNDTTSKLVRLPGYQWFLKQLNLEGVPPPTMNVKVNDSGDY--GNIPTVVSFDDTVTFAG 2454 (2806)
T ss_pred HHHHHHHHHHHHHHhcCcccccchhhhhhcCccccHHHhhhhccCCCCCCCCccccCCccc--CCCceEEecccceeeec
Confidence 999999999999999987766666555 556655443 3456678888998888887755 56899999999999999
Q ss_pred CCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCC
Q 000172 1587 GINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGT 1666 (1935)
Q Consensus 1587 s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t 1666 (1935)
|++.||+|+|.||||++|++|+|+|+||||||++|+|+|+++|++|.++++|++|+|.||||+||||+|++|+||||.||
T Consensus 2455 GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~t 2534 (2806)
T KOG0892|consen 2455 GINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNT 2534 (2806)
T ss_pred CccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchh-----hHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHHH
Q 000172 1667 VPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK-----DKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLA 1741 (1935)
Q Consensus 1667 ~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~ 1741 (1935)
+|+++|+.... +|+|+||+|++|++.+||+.|+..+ +|+++|.+||.+|.||||+||+|+||+|.+||++|++
T Consensus 2535 iplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WFekrla 2612 (2806)
T KOG0892|consen 2535 IPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWFEKRLA 2612 (2806)
T ss_pred eehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999998644 8999999999999999999998876 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccchhhHHHH
Q 000172 1742 YTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCC 1821 (1935)
Q Consensus 1742 FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~ 1821 (1935)
||||+|+.|||||||||||||.+|||||..||+|||||||++||+|+.+|+||+||||||||||||||++||||+||+||
T Consensus 2613 YTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrRcc 2692 (2806)
T KOG0892|consen 2613 YTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCC 2692 (2806)
T ss_pred HHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccccccccCCCCCcccccc-chhHHHHHHHHHhhhcCCC
Q 000172 1822 EKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEG-NKDAERALIRVKQKLDGYE 1900 (1935)
Q Consensus 1822 ~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~-n~~a~~~l~rv~~KL~g~~ 1900 (1935)
|.||.+||++++.+++|||+|+||||++|.++|.|+.++|++.+ ..+.+.++....... +..|.|++.|+++||.|++
T Consensus 2693 E~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~e~-~e~~n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e 2771 (2806)
T KOG0892|consen 2693 EFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKEED-EENFNLSGNITEDASNDRNAVRALMRAQRKLDGVE 2771 (2806)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHhhc-chhcccccchhhhhccchHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999988632 222222222222222 5778999999999999999
Q ss_pred CCCccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000172 1901 GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1901 ~~~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
.|..+||++||+.||||||||+|||+|||||.||+
T Consensus 2772 ~g~~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2772 QGTMLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred ccccccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 99999999999999999999999999999999996
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.6e-150 Score=1481.08 Aligned_cols=1510 Identities=24% Similarity=0.341 Sum_probs=1042.0
Q ss_pred ChHhHHHHhhhhhhhHHHhcCCc---cchHHHHHHhCCcHHHHHhhhchhHHHhhhhccccCCCchHHHHHHHHHhHHhh
Q 000172 159 EPCNFVQYCCHWLLPALVLHADT---SNLNWMAKIAREPLADLVKNHFVPIFSISMAWHCSERSDSELGALVLQSSILHL 235 (1935)
Q Consensus 159 ~~~~f~~~~~~~l~p~l~~~~~~---~~~~~~a~~~~~~~~~l~~~~f~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1935)
+-+++.+......+|.+...... .-++...+.++.-...++.+ +++||.=. -|...++ ....++.-..
T Consensus 740 ~~~~~~r~~~~~~Lp~~~~~~~~~a~~~vr~~~~~i~~l~~~~~~n-~~~i~~~~---~~t~~~~--~~~sv~~l~~--- 810 (2382)
T KOG0890|consen 740 EGRELLRCLLAVVLPDLNFPNQKIAVAIVRPLLKYISTLSSLLLIN-LTLIYTHL---LCTEEPN--NLESVISLLK--- 810 (2382)
T ss_pred chHHHHHHHHHHhcchhhccccHHHHHHHHHhhhhhhHHHHHHhcC-chhhhchH---hhhccch--hhHHHHHHHH---
Confidence 56667777778888888887766 12333333444444444444 55555322 3444322 2234443221
Q ss_pred hhccHHHHHHHHHHhhHHHHHHHHHhcccCCCCCCCccchhhhhhhhhhhhcccccccCCCcccceecccccCCchhHHH
Q 000172 236 AEISEIERDKLIKKHLVSIVSHIISLASCTSDPAVPYFSRDTIVHAVRTVVDGFLEMQDCPRSAGVVDKINVFRPDRVFM 315 (1935)
Q Consensus 236 ~~~~~~~~d~l~~~~~~~iv~~ll~~~~~~~~p~pp~f~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~k~~~~~pd~i~~ 315 (1935)
..++-..++.+ .+-...+++|||-.......|.-=.|.++ ....-. .+..+.+.-=.. +|=+|.
T Consensus 811 ~~~~s~l~~~~-~~e~~~~~~ell~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~t~~~~e~~-----~~fl~~ 874 (2382)
T KOG0890|consen 811 LRIGSDLRESL-ISETFALLVELLRFYNNNFTPEKRKFSSR-------KCDFID---EDIRTLISSELF-----QDFLQN 874 (2382)
T ss_pred HhhhhhHHHHH-HhhHHHHHHHHHHHHhccCcHHHHhhhhh-------hhhhhh---ccchhcchHHHH-----HHHHHH
Confidence 13333323333 34456777888853221111111111111 111000 111121111111 333444
Q ss_pred HHHHHH----HHHHHhh-hcccchhhhhhHHHHHHhcCCcceecchhHHHHHhhhh-hccccChhhhHHHHHHHHHhhhc
Q 000172 316 FIVELH----YKIAAAV-HHRHKCHRLAGVEVLINVLGHRAAVSSASNYLFNLVGQ-FIGVYALQDQCCRIVSALLKAFR 389 (1935)
Q Consensus 316 ~Ll~~~----~~~~~~~-~~~~~~h~l~~~~~l~~~lg~~~~~~~~~~y~~~~l~~-~i~~~~l~~~Cc~ll~~~~~~~~ 389 (1935)
.||.+- .++-+.. .-..|+..+-++..++..-|... +.+..-.|..+|.+ .++...++..||+....+.+.+.
T Consensus 875 ~llgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~-v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~ 953 (2382)
T KOG0890|consen 875 HLLGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKA-VSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILN 953 (2382)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHH-HHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHh
Confidence 444443 3322222 23334666666666665444211 22223335556776 68888899999999999988852
Q ss_pred CCCchhhhhhhhccccceeeccccccccCCCCCCcccchhhHHhhhhHhhcCCCccHHHHhhhcCCCCCChhhHhHHHHH
Q 000172 390 DNPSKEIVNVLGEQLQFLVSKLVACCIPSEANEPSVSRSSQVLSLLLQLTVDSDPSLHDYIRELEPFPEIDIFDGIRSFH 469 (1935)
Q Consensus 390 ~~~~~~~~~~l~~~L~~iv~~lv~~~~~~~~~~~~~~~~~~~~~lL~~lvv~~~~~L~~~i~~L~pfPd~~~fk~~r~~~ 469 (1935)
. .+-.+.++.+ |+..|+|... +.-.+++.+.+.||+.||...+..-+-..-=.|++|....+..++
T Consensus 954 ~---~~~~~~~~~~---i~~~l~p~l~--------~~~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~ 1019 (2382)
T KOG0890|consen 954 D---NEKSDILDRN---IIAALFPLLE--------HIELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAI 1019 (2382)
T ss_pred h---hhhcchhhhH---HHHHHHHHhc--------cccHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHH
Confidence 2 1233333333 7788877763 225678999999999999776666555554589999999999999
Q ss_pred HHhhccCC---hHHHHHHHhhh--ccCCccccccc---------ccc----------cCCCCch--------------h-
Q 000172 470 EELCQAYS---ARDHLLKFVQR--ACNLPSRLLPW---------RWF----------VTPNDAS--------------S- 510 (1935)
Q Consensus 470 ~~~~~~~s---l~~ei~~fl~~--~~~l~~~l~~~---------~~~----------~~~~~~~--------------~- 510 (1935)
+.+|+-.+ +-+++.+|... .-++|-+...+ .++ ....+-+ +
T Consensus 1020 ~~~r~~~~~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~ 1099 (2382)
T KOG0890|consen 1020 QEARGLLSEDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQ 1099 (2382)
T ss_pred HHHHhhccccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence 99985333 66666666542 11122111111 000 0001000 1
Q ss_pred HHHHHHHHHhhcCCCCCcceeecCCCccccccccccc-cCCCCCccccccccccccchHHHHHHHHHHHHhhccCCcccc
Q 000172 511 IRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHACRPI-NHGSGSATEFNFHLDAGISEELLIAVLKILKKYLMDDSVQIV 589 (1935)
Q Consensus 511 ~~~lv~~ll~~~~~~~~h~~~f~~~~~~~~~~~cl~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~L~~~L~~~~~~~~ 589 (1935)
+..+.++.|...|.-||.|.-|... + ++ .+ ...+.--..+..+-. .-+....++.-++++.+..--
T Consensus 1100 ~~~~~akcLg~lgaidp~~~~~k~q---~------~i~~~---~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~q 1166 (2382)
T KOG0890|consen 1100 LEELCAKCLGELGAIDPSCHRFKEQ---E------TIPSI---LQVLPIECSDLPIKF-IDFAWDTLVKAFLCEPDQLKQ 1166 (2382)
T ss_pred HHHHHHHHHHhhhccCchhhhhhcc---c------ccchh---hhccccccCchhhhh-HHHHHHHHHHHHhcCcChhhh
Confidence 1123333444444444443333221 0 10 00 011111111222222 245677888889999999888
Q ss_pred chHHHHHHHHhcccccCchhcchhhhhhHHHHHhhcCCcHHHHHHhhhhhhhhhhhhhcccccCCCCCCCCcccccCCCC
Q 000172 590 DMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKFKVFWVSLSANGISPEKSTVWETDGKT 669 (1935)
Q Consensus 590 ~~a~~~L~~ils~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~s 669 (1935)
+.++.+.+.++. ..|-.-.+..++..-.+|+-+.. ..-+++++.+..-|. +-. +.+......+... . ..+
T Consensus 1167 ~~~~~~~qe~l~-~~~~~n~e~~~~~~~elW~~Fp~-~~k~~~~P~L~s~Y~-sq~-~~p~~~~k~Piy~-----~-~lg 1236 (2382)
T KOG0890|consen 1167 DVVAYAIQEVLV-LGGSSNIEPLDRGMCELWERFPN-EVKEEMEPTLTSRYA-SQK-PEPSVGEKKPIYK-----S-SLG 1236 (2382)
T ss_pred hHHHHHHHHHHH-HhccccCccCCccHHHHHHHhHH-HHHHHHhhcccchhc-cCC-CCCCccccccccc-----c-ccc
Confidence 888888888887 33332233444444455553311 111233444444443 000 0001111122211 1 123
Q ss_pred hhhhHHHHHHHhhcc---C-CchhhHhhHHHHhccHHHHHHHhHHHHHHHhcC--CCcchhHHHHHHHHHHHhhhhcc--
Q 000172 670 FETWICPLTYSLIGC---C-NDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGS--KNVDVDLQKLISSQVQKYIFTES-- 741 (1935)
Q Consensus 670 ~~eWir~Ls~~Ll~~---s-~s~~Lr~c~~L~~~~~~~Ae~LfP~~~~~~~~e--~d~~~~~~~~Ls~~~~~~~~~~s-- 741 (1935)
+.+|+.+++..|+.. + .+|++.+|+.+...+-.++.+|+||++.+|+.. .+...++..++-..+++...+.-
T Consensus 1237 ~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~t~ns 1316 (2382)
T KOG0890|consen 1237 YREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATNTINS 1316 (2382)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccccccc
Confidence 899999999999954 3 358999999999999999999999999998632 22356666666666666432211
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHH------HhhccCCCCCCccccccccccCccccchhhcccccccccccc--cccccc
Q 000172 742 ---NKLIKSIQVFLNALNELRLCH------VMERSSSVPPKRETIGVMQFNGRYSKDVVATSNATMTTSWDK--VYWLSV 810 (1935)
Q Consensus 742 ---~~~~~~iq~~l~~~~~lR~~~------~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~wL~I 810 (1935)
....-++++++..+.|+-.+- ..+..... ++..|.-++.. ..+..+....+ .|..-|
T Consensus 1317 ~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~----------sk~~R~~~~~~--~~Tt~~~~~~~v~~fL~~i 1384 (2382)
T KOG0890|consen 1317 RGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIW----------SKVNRFWKSIM--SWTTTGEDIEGVQSFLDLI 1384 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----------HHhhhhheeee--ccccCCCchhhhHHHHhhc
Confidence 122457788888777754221 11111100 00001001100 01111111111 266688
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhh----ccchh
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ----SHKLS 886 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~----~~~l~ 886 (1935)
|-.++|.|..+|++|++|+||+|.+.. + +.. .+.......+|+.+|..|+||||+.|+.+ .+++.
T Consensus 1385 P~~tLa~aSfrc~~y~RalmylEs~~~------~----ek~-~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~ 1453 (2382)
T KOG0890|consen 1385 PSDTLARASFRCKAYARALMYLESHRS------T----EKE-KETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLY 1453 (2382)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHhcc------c----cch-hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHH
Confidence 999999999999999999999998610 0 010 12223455667779999999999999987 36799
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
.++..+|..|+|.+|.++||...+.+|. +..++.|+++|+.+.|+..+.-
T Consensus 1454 ~qil~~e~~g~~~da~~Cye~~~q~~p~------------------------------~~~~~~g~l~sml~~~~l~t~i 1503 (2382)
T KOG0890|consen 1454 QQILEHEASGNWADAAACYERLIQKDPD------------------------------KEKHHSGVLKSMLAIQHLSTEI 1503 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHhhcCCCc------------------------------cccchhhHHHhhhcccchhHHH
Confidence 9999999999999999999999886442 2345889999999999988887
Q ss_pred HHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhh-hHHHHHHHhcCCHHHHHHHHH
Q 000172 967 MYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHEN-LHSCLTALREGDSEEFYRKLK 1045 (1935)
Q Consensus 967 ~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~-L~~aLlAl~~~d~~~f~~~i~ 1045 (1935)
..++|+..+.. ++-.++.-+..+||||+++||.++.+.. ..+...|.+. +++++.+..++|.-.+.+.|+
T Consensus 1504 ~~~dg~~~~~s--e~~~~~~s~~~eaaW~l~qwD~~e~~l~-------~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~ 1574 (2382)
T KOG0890|consen 1504 LHLDGLIINRS--EEVDELNSLGVEAAWRLSQWDLLESYLS-------DRNIEYWSVESIGKLLLRNKKKDEIATLDLIE 1574 (2382)
T ss_pred hhhcchhhccC--HHHHHHHHHHHHHHhhhcchhhhhhhhh-------cccccchhHHHHHHHHHhhcccchhhHHHHHH
Confidence 78888776653 4456788889999999999999887541 2334566665 899999999999999999999
Q ss_pred HHHHHHHHHHhhhchh-hHHHHHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHHHHH
Q 000172 1046 HSKQELVLSVACASEE-STEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSS 1124 (1935)
Q Consensus 1046 ~aR~~l~~eLsa~s~E-S~~r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~ 1124 (1935)
.+|..++++|++.+.| ||.++|+.+++||++.||+..++...+.+++ + + ...-...|..
T Consensus 1575 ~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~-------------~----~---s~~~sd~W~~ 1634 (2382)
T KOG0890|consen 1575 NSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD-------------E----D---SANNSDNWKN 1634 (2382)
T ss_pred HHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------------c----c---ccccchhHHH
Confidence 9999999999999888 9999999999999999999998854433221 0 0 0111268999
Q ss_pred HHHhhhcchhhhhhHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHH
Q 000172 1125 ILKRTQLHMNLLEPFMAFRRVLLQILS---CKDFTMQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLL 1201 (1935)
Q Consensus 1125 rl~~~q~~~e~~epiL~~R~~vl~il~---~~e~~~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~A 1201 (1935)
|++++|+.+...||||++|+.++++.. .++.++++|+++|++||++|+++.|+++|.+...... ++. .-|.|
T Consensus 1635 Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~----~~i-~~E~A 1709 (2382)
T KOG0890|consen 1635 RLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL----PEI-VLERA 1709 (2382)
T ss_pred HHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc----chH-HHHHH
Confidence 999999999999999999999998743 3677899999999999999999999999976643221 111 24589
Q ss_pred HHHHHCCChHHHHHHHHHHHhhccCC---------Cc-----hhHHHHHHhHhHHHhhcCChHHHHHhhhchhccccccc
Q 000172 1202 NLLRAQGQHEMAINLAKYISENYESN---------EE-----APDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQ 1267 (1935)
Q Consensus 1202 k~LW~~Ge~~~Ai~~Lq~l~~~~~~~---------~~-----~a~ll~llG~wlaet~~e~~~~I~~~Y~~~Av~~~e~~ 1267 (1935)
|++|.+|+...|+.+||..+.+.+.+ .. ...+..++|+|+.++......+|++.|.+ |.++.
T Consensus 1710 K~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~-~~ail--- 1785 (2382)
T KOG0890|consen 1710 KLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHD-AKAIL--- 1785 (2382)
T ss_pred HHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHH-HHHHc---
Confidence 99999999999999999887554332 11 13467899999999999999999999987 54321
Q ss_pred ccchhhhHHHHhhhhhhHHHHHHHHHhhHHHHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHH
Q 000172 1268 RTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQ 1347 (1935)
Q Consensus 1268 ~~~~~~~~~~~~~~~~~lA~f~D~~~q~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~y~~~~~~l~~~ 1347 (1935)
.++.+.||++|+|+|..+-... ..+.++ +
T Consensus 1786 --------~ewe~~hy~l~~yy~kll~~~~-------------------------------~~~~E~------------~ 1814 (2382)
T KOG0890|consen 1786 --------PEWEDKHYHLGKYYDKLLEDYK-------------------------------SNKMEK------------S 1814 (2382)
T ss_pred --------ccccCceeeHHHHHHHHhhhhh-------------------------------cccccc------------c
Confidence 1245789999999998765430 001111 0
Q ss_pred HhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCc---------c--------HHHHHHHHH
Q 000172 1348 LAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS---------R--------QNVIKNMVD 1410 (1935)
Q Consensus 1348 ~~lD~~e~~~l~~~r~~fl~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~---------~--------~~v~~~~~~ 1410 (1935)
+....|+. ++-+|.+++..|+++.++.+||++||||++|. + +.++..+.+
T Consensus 1815 ------------g~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~ 1881 (2382)
T KOG0890|consen 1815 ------------GRVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEE 1881 (2382)
T ss_pred ------------ccHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHH
Confidence 11123777 99999999999999999999999999999742 1 135666778
Q ss_pred hhhcccccchhhhhHHHHhhcCCCccccccccHHHHHHHHHHHHHHhCCchhHHHHHHhccccchhhhhccccchhhhhh
Q 000172 1411 TIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDRIKDKQRSRNSFVVDMD 1490 (1935)
Q Consensus 1411 ~~~~vp~~kfl~~lpQL~srL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~ 1490 (1935)
.+..+|+|.|+++.+||+|||||+++ .+...|.++|.++..+||||+||++.++.+|+..+.
T Consensus 1882 ~~~~lp~Y~f~ta~sQLlSRicH~~~-----dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R------------- 1943 (2382)
T KOG0890|consen 1882 ALEHLPTYQFYTAYSQLLSRICHPNQ-----DVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSR------------- 1943 (2382)
T ss_pred HHHhCcchHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHH-------------
Confidence 99999999999999999999999873 456789999999999999999999999988765332
Q ss_pred HHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHhhhhccccccccccchhhhhhcccc-----cccccc---cccc
Q 000172 1491 KKLAAENLLEELS---SYHGAIIRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQL-----ELVPVV---TATV 1559 (1935)
Q Consensus 1491 r~~aa~~il~~l~---~~~~~~~~~~~~l~~~~~~La~~~~~~e~~~~~~~~~~~l~~l~~l-----~~vp~~---t~~l 1559 (1935)
....+.|+.+.. .....++.+...+.+.+.+|++-+... +.+..++...++.+-.. ..+|.. ..++
T Consensus 1944 -~~R~keIL~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~~--ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptl 2020 (2382)
T KOG0890|consen 1944 -VERCKEILTKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVNS--SSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTL 2020 (2382)
T ss_pred -HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCCc--ccccccHHHHHHHhccccChhhhhhhHhhhccccc
Confidence 233445665432 245567778888999999999865432 33445555555532211 134432 2233
Q ss_pred CCCCCC--ccc-----CCCccccccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHH
Q 000172 1560 PIDCTC--QYN-----EGSFPYFKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1632 (1935)
Q Consensus 1560 pi~~~~--~y~-----~g~~~~I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL 1632 (1935)
|..+.. .+. .|..|+|.+|.+.|+|++|.|+||+|+++||||+.|.+|||+ +||||+|.|+|+|..+||.+|
T Consensus 2021 P~~~~~~~~h~~~~~f~~~~~~IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKp-KDDLRKD~RlMeFn~lin~lL 2099 (2382)
T KOG0890|consen 2021 PLIDNNHATHSPFPPFQSHLPYISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKP-KDDLRKDARLMEFNELINKLL 2099 (2382)
T ss_pred ccccCcccccCCCCCCCCcchhhhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCc-hhhhhhhhHHHHHHHHHHHHH
Confidence 332221 111 123468999999999999999999999999999999999996 799999999999999999999
Q ss_pred HcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhh----cchhhHHH
Q 000172 1633 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHM----SNVKDKRI 1708 (1935)
Q Consensus 1633 ~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~k~~ 1708 (1935)
+||.|+|||+|+||||+||||+.+|||||||||+.++++|+.+.+...|. +-+. .+++..+ ....+|.+
T Consensus 2100 ~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~---~~~~----~~l~~~~~~~~~~~~~~~~ 2172 (2382)
T KOG0890|consen 2100 RKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGK---WMIK----KQLRSVHLKKQMAKEEKGK 2172 (2382)
T ss_pred hhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccc---cchh----hHHHHhcCcHhhcccchhh
Confidence 99999999999999999999999999999999999999999987733332 1111 1232222 22345777
Q ss_pred HHH-HHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000172 1709 AFQ-EVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1787 (1935)
Q Consensus 1709 ~f~-~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g 1787 (1935)
+|. .++++|||||++||.++||+|..||..|.+|+||+||||||||||||||||++|||+|..||++||+||+|.|++|
T Consensus 2173 ~F~~~~lpkfPPVFheWFl~~FPeP~sW~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKG 2252 (2382)
T KOG0890|consen 2173 VFREKLLPKFPPVFHEWFLESFPEPGSWFASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKG 2252 (2382)
T ss_pred hhHHhhcccCCcHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCC
Confidence 886 5899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccHHHHhhccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccccc
Q 000172 1788 LMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDD 1867 (1935)
Q Consensus 1788 ~~l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~~~ 1867 (1935)
..|++||.||||||+||+|||||+|+||.||++||.||++||+|++.+|+||+.|+||||+.|.....+..
T Consensus 2253 etlevPEiVPFRLT~NMidamGp~G~EG~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s--------- 2323 (2382)
T KOG0890|consen 2253 ETLEVPELVPFRLTQNMIDAMGPLGLEGSFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGRS--------- 2323 (2382)
T ss_pred cccCCCCccceecchhHHhhcCCcccchhHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999975321100
Q ss_pred cccCCCCCccccccchhHHHHHHHHHhhhcCCC--CCCccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000172 1868 LETGLEGPEDEYEGNKDAERALIRVKQKLDGYE--GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1868 ~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~--~~~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
....|.. .+++.+|++|++|.. +|-++||+|||+.||++|||++|||+||.||+|||
T Consensus 2324 ----------~~~i~e~-~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2324 ----------PKKINED-RLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred ----------cCcccch-HHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 0011122 678999999999954 57899999999999999999999999999999997
No 3
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=9.1e-101 Score=1048.92 Aligned_cols=1084 Identities=25% Similarity=0.389 Sum_probs=821.7
Q ss_pred ChhhhHHHHHHHhhccCCchhhHhhHHHHhccHHHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhhcchhhHHHH
Q 000172 669 TFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQKYIFTESNKLIKSI 748 (1935)
Q Consensus 669 s~~eWir~Ls~~Ll~~s~s~~Lr~c~~L~~~~~~~Ae~LfP~~~~~~~~e~d~~~~~~~~Ls~~~~~~~~~~s~~~~~~i 748 (1935)
.|.+|++++.+.++++++++++|+|..++..+.++|+++||++|.+||.+.+ .+.+..+...+..... ++..++.+
T Consensus 1129 ~~~e~~~~~~i~~lk~~~s~~lr~~~~l~~~~~~l~r~~f~~~~~s~w~e~~--~~~q~~l~~~le~~~~--~~~i~e~~ 1204 (2341)
T KOG0891|consen 1129 DWQEWIRRLSIELLKESPSHALRACSSLAQAYYPLARDLFNAAFVSCWTELD--SSYQNDLIKSLEIALS--SPDIPEII 1204 (2341)
T ss_pred cccchhhhhhHHHHHhcchhhHHHHHhhhhhccccchhhhhHHHHHHhhhcc--cchhhhhhhhHHHHHh--CCccHHHH
Confidence 3899999999999999999999999999999999999999999999998864 5566667766666433 23334777
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccccccccCccccchhhccccccccccccccccccCHHHHHHHHHHhcchHHH
Q 000172 749 QVFLNALNELRLCHVMERSSSVPPKRETIGVMQFNGRYSKDVVATSNATMTTSWDKVYWLSVDYLRVAKSAVICGSYFTS 828 (1935)
Q Consensus 749 q~~l~~~~~lR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~wL~Id~~~lA~aA~~C~AyatA 828 (1935)
|+++|. .+||||... | ++|+..+++..|..|++|++|
T Consensus 1205 q~l~nl------~ef~eh~~~-p------------------------------------lpi~~~~L~~~~~~c~a~~~~ 1241 (2341)
T KOG0891|consen 1205 QTLLNL------AEFMEHDDK-P------------------------------------LPIPIKTLGLYAEKCRAYAKA 1241 (2341)
T ss_pred HhhhhH------HHHHHhccc-C------------------------------------CCcchhhHHHHHHHHHHHHHH
Confidence 777774 667777632 2 666777999999999999999
Q ss_pred hhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc----cchhhHHHHHHhhCCHHHHHHH
Q 000172 829 VMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----HKLSSQIVTLEHEGNWSKALEY 904 (1935)
Q Consensus 829 Lly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~----~~l~~~i~~yE~eg~W~kAL~~ 904 (1935)
|+|+|+++.+. ...++++.|+.|.+.++.+|.+.|+..+ ..+..+..|||+..+|++||.+
T Consensus 1242 l~y~el~~~~~---------------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l~~~~d~l~a 1306 (2341)
T KOG0891|consen 1242 LHYKELEFLKE---------------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKLHRWEDALAA 1306 (2341)
T ss_pred HHHHHHHhhhc---------------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhcccccccchhHhhh
Confidence 99999986431 3467899999999999999999999863 3578899999999999999999
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHhhhcccccCCCCCCch
Q 000172 905 YELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPE 984 (1935)
Q Consensus 905 Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gL~~s~~~~~~~~~ 984 (1935)
|+........ ..+...|.|+|+.++|.|+.++...+..+.... .+.+..
T Consensus 1307 ~~~~~~~~~~------------------------------~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~-~~~~~~ 1355 (2341)
T KOG0891|consen 1307 YELREKAGDS------------------------------SFELRMGKMRCLEALGDWDELSQLASEKWEVAG-QEAKHK 1355 (2341)
T ss_pred hhcccchhhh------------------------------hHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcc-hhHHHH
Confidence 9987653211 123468999999999999999855433222221 234568
Q ss_pred hhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 000172 985 FTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTE 1064 (1935)
Q Consensus 985 ~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~~i~~aR~~l~~eLsa~s~ES~~ 1064 (1935)
+++.+..+||.+++||.+.+ +++.++..+++..+|. +.+++|..++..+...+..+|+.++.+++++..|||+
T Consensus 1356 ~ap~a~~~~~~~~~w~~~~~--~~s~~~~~~~~~~~~~-----a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~s 1428 (2341)
T KOG0891|consen 1356 MAPLAAAAAWGLGQWDTMAE--YVSVMSEDSQDKAFFR-----AILALHRDEFEKAVKLIERARDLLDTELTAMAGESYN 1428 (2341)
T ss_pred HHHHHHHhhhccccchhhhh--hcccccccchhhHHHH-----HHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHh
Confidence 89999999999999998665 5666666666655554 5789999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000172 1065 YIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRR 1144 (1935)
Q Consensus 1065 r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~e~~epiL~~R~ 1144 (1935)
++|..+++.||+.|+|++++ |+..+ ++...+...|.+++++++...+.|+.++.+|.
T Consensus 1429 r~y~~~~~~~~~~e~E~~~~--~k~~~---------------------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~ 1485 (2341)
T KOG0891|consen 1429 RAYGVMVRAQMLAELEEIIE--YKKLP---------------------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRS 1485 (2341)
T ss_pred hchhhhhhhhhhhhHHHHHH--hhccc---------------------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhh
Confidence 99999999999999999987 44321 24566788999999999999999999999998
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccC---CCchH----HHHHHHHCCChHHHHHHH
Q 000172 1145 VLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQ---SPLPH----LLNLLRAQGQHEMAINLA 1217 (1935)
Q Consensus 1145 ~vl~il~~~e~~~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q---~~l~~----~Ak~LW~~Ge~~~Ai~~L 1217 (1935)
.++. +++. ..+|++++.+|||+|+..++.+.+..+..-.+..+..+ +..|. +.+++|..+....|++.+
T Consensus 1486 ~v~~---p~~~-~~~~ik~a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~~~~~~~~~ 1561 (2341)
T KOG0891|consen 1486 LVLS---PQED-MEMWIKFASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDSKDEAINTL 1561 (2341)
T ss_pred hccC---CCcc-hHHHHHHHHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHHHHHHhHHHhhccchHHHHHh
Confidence 7764 6776 78899999999999999999999877654333322111 11232 688999999999999887
Q ss_pred HHHHhhccCCCchhHHHHHHhHhHHHhhcCChHHHHHhhhchhcccccccccchhhhHHHHhhhhhhHHHHHHHHHhhHH
Q 000172 1218 KYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYE 1297 (1935)
Q Consensus 1218 q~l~~~~~~~~~~a~ll~llG~wlaet~~e~~~~I~~~Y~~~Av~~~e~~~~~~~~~~~~~~~~~~~lA~f~D~~~q~~~ 1297 (1935)
+...... .++.++.. +... .+...... +-+..+ ..++
T Consensus 1562 ~~~~s~l----------------~~d~~~~~-~~~~----------~~~~~~~~--------~~~~~l------~a~~-- 1598 (2341)
T KOG0891|consen 1562 QEFTSTL----------------NSDLGSDP-DELL----------SEPTEAEK--------QEYTKL------LARC-- 1598 (2341)
T ss_pred HHHHHHH----------------HhhcCCCc-hhhh----------hcccchhh--------hHHHHH------HHHH--
Confidence 6443321 12222211 1000 00000000 000000 1122
Q ss_pred HHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHhhcHHHHHHh-------------------
Q 000172 1298 ERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKL------------------- 1358 (1935)
Q Consensus 1298 ~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~y~~~~~~l~~~~~lD~~e~~~l------------------- 1358 (1935)
+++.++|+..... .+...-+..++..|..++..++.||++|-.-....+.. -.-++..
T Consensus 1599 -~l~~~~w~~~~~~-s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~-V~~l~~~~~~~~~~~~~~~~~~~~~~ 1675 (2341)
T KOG0891|consen 1599 -FLKLGEWQQLLQD-SWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEV-VQMLKQVTKAKYAPGANIWNMPDYLG 1675 (2341)
T ss_pred -HHhhccccccccC-CccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-HHhhhhhhccccCCccccccchhhcc
Confidence 2455666654432 23344455577788888999999999993211111100 0000000
Q ss_pred ----HHhHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1359 ----LDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1359 ----~~~r~~fl~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..-...|+.+|+++|++++..+.+...+++.|+++|||.+|+++.|..++..++..+|.+.|+..+|||++||..+
T Consensus 1676 ~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~~ipqLiari~~~ 1755 (2341)
T KOG0891|consen 1676 SNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLEVIPQLIARIHTP 1755 (2341)
T ss_pred CcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHHhHHHHHHHHhcc
Confidence 0112459999999999999999988889999999999999999999999999999999999999999999999976
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCchhHHHHHHhccccc---------hhhhhccccchhhhhhHHHHHHHHH------
Q 000172 1435 KDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR---------IKDKQRSRNSFVVDMDKKLAAENLL------ 1499 (1935)
Q Consensus 1435 ~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~L~a~~~s~~---------~~~~~r~~~~~~v~~~r~~aa~~il------ 1499 (1935)
. ...++.+..++..+++.||+++.|++.+...+.. +-++.+.+...++.++..++.+.|.
T Consensus 1756 ~-----~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~lvs~elir~a~lwh 1830 (2341)
T KOG0891|consen 1756 D-----QLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARLVSEELIRVAILWH 1830 (2341)
T ss_pred c-----hHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhhhH
Confidence 4 4577889999999999999999999987665543 2233445556667776666666552
Q ss_pred -------HHHH-hhHHHHHHHHHHHHHHHHHHHhhhhcccccc---------------------------------cccc
Q 000172 1500 -------EELS-SYHGAIIRQMKQMVDVYIKLAELETRREDTN---------------------------------KRIQ 1538 (1935)
Q Consensus 1500 -------~~l~-~~~~~~~~~~~~l~~~~~~La~~~~~~e~~~---------------------------------~~~~ 1538 (1935)
++.. .+++ .++++.|++.++++.++-.+...+. +.+.
T Consensus 1831 e~w~e~ldeAsr~yf~--~~nv~~m~~~l~p~~~~l~~~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~~~~dL~qawd 1908 (2341)
T KOG0891|consen 1831 EQWHEGLEEASRLYFS--DHNVEGMFAVLRPLHEMLERGPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSGDVKDLNQAWD 1908 (2341)
T ss_pred hhhhhccHHHHHHHhh--HhhHHHHHHHHhHHHHHhhcCCcchhhhhhHHhhChhhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 2221 2344 4788888888888876522111000 1110
Q ss_pred --------chhhhhhccccccccc-----cccccCCCCCCcccCCC-ccccccccceEEEecCCCcceEEEEEecCCcEE
Q 000172 1539 --------LPREIRCLRQLELVPV-----VTATVPIDCTCQYNEGS-FPYFKGLAESVMVMNGINAPKVVECFGSDGHKY 1604 (1935)
Q Consensus 1539 --------~~~~l~~l~~l~~vp~-----~t~~lpi~~~~~y~~g~-~~~I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y 1604 (1935)
+.+.++.++.++.+.+ +...+++..++.|.++. +..|.+|.+++.|++|++||+++.|+||||+.|
T Consensus 1909 ly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~vPgty~~~~~~i~i~~f~~~~~vitskqRprkl~i~gs~g~d~ 1988 (2341)
T KOG0891|consen 1909 IYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAVPGTYDPGKPIIRIQSFEPKFNVITSKQRPRKLVIRGSDGKDY 1988 (2341)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcccccccccceeccCCccCCCceEEehhhccHHHHHHHHHhhhHHHhhcccchhhH
Confidence 1233344444444443 23456777888998763 247999999999999999999999999999999
Q ss_pred EeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCC
Q 000172 1605 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1684 (1935)
Q Consensus 1605 ~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~ 1684 (1935)
.|++| |++|+|||+|+||+|++||+++..+.+|+||+|.|++|.|+|+++++|+|+||+++.+++..+....... ..
T Consensus 1989 ~~~lk-ghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k--~i 2065 (2341)
T KOG0891|consen 1989 QYLLK-GHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKK--KI 2065 (2341)
T ss_pred HHHhh-chhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhh--cc
Confidence 99999 7999999999999999999999999999999999999999999999999999999999999776543222 11
Q ss_pred CCCCCCchhhHhhhh--hcchhhHHHHHHHHHhhhhh-hHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 000172 1685 RYGIGDWSFLKCREH--MSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1761 (1935)
Q Consensus 1685 ~~~~~~~~~~~~~~~--~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDR 1761 (1935)
..+..++...+.... -....+|..+|+....+... .+++-++-..++++.|+.+|.+||+|.|+|||+|||+|+|||
T Consensus 2066 ~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdr 2145 (2341)
T KOG0891|consen 2066 PLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDR 2145 (2341)
T ss_pred CCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhcccc
Confidence 122222222221100 01123577888877777666 555666677899999999999999999999999999999999
Q ss_pred CCCeEEEecCCCcEEEeecchhhccccC-CCCCCCCCccccHHHHhhccccccchhhHHHHHHHHHHHhcChHHHHHHHH
Q 000172 1762 HAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVE 1840 (1935)
Q Consensus 1762 H~~NILid~~TG~vvHIDfg~~F~~g~~-l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~ 1840 (1935)
||+|.|+|+.||+++|||||.||+..+. .++||.+||||||+++++|.++|.+|.|+.+|+.+++++|.+++.++++++
T Consensus 2146 hpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~a~le 2225 (2341)
T KOG0891|consen 2146 HPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLMAVLE 2225 (2341)
T ss_pred chhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHHHHHH
Confidence 9999999999999999999999999986 669999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCcccccChhHHHhhhhccc---cc----------------cccCCCCCccccccchhHHHHHHHHHhhhcCCC-
Q 000172 1841 VFIHDPLYKWALSPLKALQRQKEMD---DD----------------LETGLEGPEDEYEGNKDAERALIRVKQKLDGYE- 1900 (1935)
Q Consensus 1841 ~fl~DPL~~W~~~~~k~~~~~~~~~---~~----------------~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~- 1900 (1935)
+|+|||+++|...+....+...... .. ..............|..+.-++.++..|+.|.+
T Consensus 2226 afvydplinwr~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~vl~~~~~kltg~~~ 2305 (2341)
T KOG0891|consen 2226 AFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNRKELGLPRAMAGEEIAVLESSVKPEALNARAIQVLKRISDKLTGRDF 2305 (2341)
T ss_pred hhhcccchhhhcccccchhhhhcccCCCCcccchhhhccHHhhhccccccccccccccccChhhHHHHHhcccccceeec
Confidence 9999999999986332221111000 00 000000111122336677889999999999954
Q ss_pred -CCCccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000172 1901 -GGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1901 -~~~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
..+.++|..||..||+|||+|+|||+.|+||||+|
T Consensus 2306 ~~~~~l~v~~qv~~l~~qats~e~lc~~yigwcpfw 2341 (2341)
T KOG0891|consen 2306 VHEEPLDVPEQVEKLIQQATSPENLCQCYIGWCPFW 2341 (2341)
T ss_pred cCcccCcHHHHHHHHHHhhcChHhhhcccccCCCCC
Confidence 45689999999999999999999999999999953
No 4
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-76 Score=837.02 Aligned_cols=1092 Identities=21% Similarity=0.249 Sum_probs=692.3
Q ss_pred CCcccccCC----CChhhhHHHHHHHhhccCCchhhHhhHHHHhccHHHHHHHhHHHHHHHhcCCCcchhHHHHHHHHHH
Q 000172 659 KSTVWETDG----KTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDVDLQKLISSQVQ 734 (1935)
Q Consensus 659 ~~~~W~~~~----~s~~eWir~Ls~~Ll~~s~s~~Lr~c~~L~~~~~~~Ae~LfP~~~~~~~~e~d~~~~~~~~Ls~~~~ 734 (1935)
+-..|...+ ..|++|+.++.++++.+.+...++.|+-++..+..++..++..++..||.+.-. ...+.+-..+.
T Consensus 907 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~l~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~s~~ 984 (2105)
T COG5032 907 LFEAWNRVDFLLKDFWQEELDNLLVALLKELPFMALRDCSILSDLYFMLGRELWNSVSFECWLELMN--SYKRLLIKSLK 984 (2105)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHhccchHHhhhcchhHHHHhhccHHHHhHHhHHHHHHHhh--hhhHHHHHhHH
Confidence 345566322 238999999999999888999999999999999999999999999999965311 11111111111
Q ss_pred HhhhhcchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccccCccccchhhccccccccccccccccccCHHH
Q 000172 735 KYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRETIGVMQFNGRYSKDVVATSNATMTTSWDKVYWLSVDYLR 814 (1935)
Q Consensus 735 ~~~~~~s~~~~~~iq~~l~~~~~lR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~wL~Id~~~ 814 (1935)
.+ ...+...+...+..+...+ ..+++ +...+|+.++...
T Consensus 985 ~~-~~~~~~~~~~~~~~~~~~n---~~e~~-------------------------------------~~~~~~~~~~~~~ 1023 (2105)
T COG5032 985 SK-LHLPTIPILILQMLLDSKN---LTEFT-------------------------------------EHQLKNLPLPSLS 1023 (2105)
T ss_pred HH-hhcCCCCchhhhhhhhhcc---hhhhh-------------------------------------hhhhheecchhhh
Confidence 11 1111222233333332211 01111 1113567788777
Q ss_pred HHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc----chhhHHH
Q 000172 815 VAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH----KLSSQIV 890 (1935)
Q Consensus 815 lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~----~l~~~i~ 890 (1935)
++..+..|+.++++++|.|.+.-+. .....++.++++..++.+.|..-|+.... .......
T Consensus 1024 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1088 (2105)
T COG5032 1024 IGFYESLCSFLAKLLHDEELYFFPL---------------LFVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPH 1088 (2105)
T ss_pred hhHHHHHHHHHHHHhHHHHHHhccc---------------chHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHH
Confidence 7799999999999999999864321 02356889999999999999999964421 2344578
Q ss_pred HHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHhh
Q 000172 891 TLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 970 (1935)
Q Consensus 891 ~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~ 970 (1935)
+++..++|.+++..|-........ ......|.+++....|.|.......+
T Consensus 1089 ~~~~l~~~~~~l~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~~~L~~ 1138 (2105)
T COG5032 1089 LVKYLQRWYEALNRYFELLSKGDR------------------------------LFAISFTKLRNVDALGKLELYSSLAE 1138 (2105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc------------------------------hhHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999877653100 11235688999999999888765553
Q ss_pred hcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHHHH-HHHHH
Q 000172 971 GLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKL-KHSKQ 1049 (1935)
Q Consensus 971 gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~~i-~~aR~ 1049 (1935)
.-.- .+.+..+.-..++.+.++|..|.|+....+ .+.+.....+..++.. ......+.++.+.+.... -.++.
T Consensus 1139 ~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~--~e~~~~k~~~~~~~~s---~~~~~~~~~~~~~a~~~~~~~~~~ 1212 (2105)
T COG5032 1139 IDMF-LSLHRRRKLLETLVATAYEQVGEWYKAQQL--YEVAQRKARSKEFPFS---LQYLYWHINDIDCADKLQSVLAEL 1212 (2105)
T ss_pred Hhhh-hccCcchhhhhHHHHHHHHHHHhHHHHHHH--HHHHhhhcccccCchh---hHHHHHcccchhhHhhhhhhhhhc
Confidence 2111 111222223556778899999999964332 2222222334444432 246778889999988888 67777
Q ss_pred HHHHHHhhh-chhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHHHHHHHHh
Q 000172 1050 ELVLSVACA-SEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKR 1128 (1935)
Q Consensus 1050 ~l~~eLsa~-s~ES~~r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~ 1128 (1935)
.++.++... ..++|.+++-...+.+...|+++++...++...+ .+ .-.-...+.+.|..++.+
T Consensus 1213 ~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~---------~~~~~~~~~~~~~~~l~~ 1276 (2105)
T COG5032 1213 SLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGMYKSNED-------FG---------ALMLLSLSAELWDKILEG 1276 (2105)
T ss_pred ccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhhhhcccc-------hH---------HHHHHHHHHhccchhhcc
Confidence 888888877 7789999998889999999999998754443211 00 010124455688888888
Q ss_pred ---hhcchhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhcccccc----ccCCC--ch
Q 000172 1129 ---TQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGF-RLSQAAAALHELKCSIFHMI----IEQSP--LP 1198 (1935)
Q Consensus 1129 ---~q~~~e~~epiL~~R~~vl~il~~~e~~~~~wl~~A~laRKag-~~~~A~~aL~~l~~l~~~~~----i~q~~--l~ 1198 (1935)
++..+..|......+..+. .+.+. ..+|++++..|++.+ +.......+..+..-..... .-... .+
T Consensus 1277 ~~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1352 (2105)
T COG5032 1277 RSSCSKSIKLSLNIWLDLSIVV---SPKDE-PELFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPP 1352 (2105)
T ss_pred hhhhhHHHHHHHHHHHHHhhhc---CHhhh-hhHHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCC
Confidence 7776666655444442222 22332 478999999999999 66666666655432111000 00000 01
Q ss_pred H---HHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHHHhhc-CChHHHHHhhhchhcccccccccchhhh
Q 000172 1199 H---LLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRS-SNSRIILENYLKPAVSFSEDQRTTDKKS 1274 (1935)
Q Consensus 1199 ~---~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~wlaet~~-e~~~~I~~~Y~~~Av~~~e~~~~~~~~~ 1274 (1935)
. .-+..|+......+....+.+ ..+.+.++..... -....+...|.+.+.
T Consensus 1353 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 1406 (2105)
T COG5032 1353 WALLDLKRLLATWRQNAFLRINPEL-------------LPLLSSLLNLQSSSLSKQLVSRGSSESAI------------- 1406 (2105)
T ss_pred chhhhhhhhhhHHHHhhhhhhchhh-------------ccccchhhhccchhccccccccchhhhhH-------------
Confidence 0 233344443322222221111 1111111111100 000000000000000
Q ss_pred HHHHhhhhhhHHHHHHHHHhhHHHHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHH-----HHHHHh
Q 000172 1275 IERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQE-----LQKQLA 1349 (1935)
Q Consensus 1275 ~~~~~~~~~~lA~f~D~~~q~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~y~~~~~~-----l~~~~~ 1349 (1935)
....+.+.|+ ... .+.+.|....++......+.. ++..+......++.+|+++... .+--..
T Consensus 1407 ---~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1473 (2105)
T COG5032 1407 ---SINSFASVAR------KHF---LPDNQLKKIYQLSNILISEAF-LLLRYLLLCRLGRRELKAGLNVWNLTNLELFSD 1473 (2105)
T ss_pred ---HHHHHHHHHH------Hhc---CcHHHHHHHhhhhhhhcchHH-HHHHHHHHHHhhhHHHHHHHHhhcccchhHHHH
Confidence 0000111110 000 111233332222111111111 2222222223333455544320 000000
Q ss_pred hcHHHHH-HhHHhHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCccHHHHHHHHHhhhcccccc-hhhhhHHH
Q 000172 1350 MDREEAQ-KLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQSYK-FIPLVYQI 1427 (1935)
Q Consensus 1350 lD~~e~~-~l~~~r~~fl~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~~~~v~~~~~~~~~~vp~~k-fl~~lpQL 1427 (1935)
....+.. ........+..++++..+.+...+..-+.++.+|.+.+|+..+....+..++..+........ |++.+||+
T Consensus 1474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1553 (2105)
T COG5032 1474 IQESEFFEWGKNLKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFI 1553 (2105)
T ss_pred HHHHHHHHhhhhhHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchh
Confidence 1111111 112334456677888889999888888888999999999999987777777777777766666 77777777
Q ss_pred HhhcCCCccccccccHHHHHHHHHHHHHHhCCchhHHHHHHhccccc---------hhhhhccccchhhhhhHHHHHHHH
Q 000172 1428 ASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGDR---------IKDKQRSRNSFVVDMDKKLAAENL 1498 (1935)
Q Consensus 1428 ~srL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~L~a~~~s~~---------~~~~~r~~~~~~v~~~r~~aa~~i 1498 (1935)
.+++.... ..-...+..++.++++.||++..+++.+...+.. .....+.+....+.+......|.+
T Consensus 1554 ~~l~~~l~-----~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~E~~ 1628 (2105)
T COG5032 1554 PQLLSSLS-----LLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALELSDENI 1628 (2105)
T ss_pred hhhhhhcc-----hhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHhhhhhhh
Confidence 77666432 1223568899999999999999999985443221 111122222222222111111111
Q ss_pred --------------HHHHHh-hHHHHHHHHHHHHHHHHHHHhhhhcc-----c---------------------------
Q 000172 1499 --------------LEELSS-YHGAIIRQMKQMVDVYIKLAELETRR-----E--------------------------- 1531 (1935)
Q Consensus 1499 --------------l~~l~~-~~~~~~~~~~~l~~~~~~La~~~~~~-----e--------------------------- 1531 (1935)
++.+.+ ...+... +..+......+....... +
T Consensus 1629 ~~~~~l~~~~~~~~l~q~~~r~~~~~~~-i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D~ 1707 (2105)
T COG5032 1629 RIAYPLLHLLFEPILAQLLSRLSSENNK-ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKIDI 1707 (2105)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhhh
Confidence 111110 0000000 011111111111110000 0
Q ss_pred -cccccc--------cchhhhhhcccc--c-ccccccc---ccCCCCCCcccCC-CccccccccceEEEecC-CCcceEE
Q 000172 1532 -DTNKRI--------QLPREIRCLRQL--E-LVPVVTA---TVPIDCTCQYNEG-SFPYFKGLAESVMVMNG-INAPKVV 1594 (1935)
Q Consensus 1532 -~~~~~~--------~~~~~l~~l~~l--~-~vp~~t~---~lpi~~~~~y~~g-~~~~I~~f~~~~~v~~s-~~~Pk~i 1594 (1935)
..+..+ .+++.+.+.... . .-|.... ...+..+++|..+ ..|.|.+|.|++.+++| .++||++
T Consensus 1708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl 1787 (2105)
T COG5032 1708 SLLNLSRKLYISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRRL 1787 (2105)
T ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecCceeeeecccccceEE
Confidence 000000 001111110000 0 0111100 1334456677655 57899999999999988 9999999
Q ss_pred EEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhh
Q 000172 1595 ECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLI 1674 (1935)
Q Consensus 1595 ~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~ 1674 (1935)
+++|+||+.|+|++| |+||+|||++|||++++||++|+++++|+||++.|++|+|+|+||++|+||||||++|+++|+.
T Consensus 1788 ~~rgsdG~~y~~i~K-~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~ 1866 (2105)
T COG5032 1788 TIRGSDGKLYSFIVK-GGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILR 1866 (2105)
T ss_pred EEEecCCcEEEEEee-cCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHH
Confidence 999999999999999 4799999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHh
Q 000172 1675 GSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGY 1754 (1935)
Q Consensus 1675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgY 1754 (1935)
......+....+. .-..++-.......|.+.|...+.+++|++++||.+.|++|.+|+.+|+|||+|+|+|||+||
T Consensus 1867 ~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w~~aR~Ny~~SlA~ySvigY 1942 (2105)
T COG5032 1867 EYHKRKNISIDQE----KKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGY 1942 (2105)
T ss_pred HHhhhcCCChhHH----hhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 7554332211100 000111112222346778888888888999999999999999999999999999999999999
Q ss_pred hcccCCCCCCeEEEecCCCcEEEeecchhhc-cccCCCCCCCCCccccHHHHhhccccccchhhHHHHHHHHHHHhcChH
Q 000172 1755 IVGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKE 1833 (1935)
Q Consensus 1755 ILGLGDRH~~NILid~~TG~vvHIDfg~~F~-~g~~l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~~~~ 1833 (1935)
|||+|||||+|||||+.||+++|||||++|+ +|..+++||.|||||||||+++||++|+||.||.+|+.++++||++.+
T Consensus 1943 iLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~EG~Fr~~c~~~~~~LRk~~~ 2022 (2105)
T COG5032 1943 ILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRALRKNAD 2022 (2105)
T ss_pred HccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchhhHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999999999977765 556799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCcccccChhHHHhhhhccccccccCCCCCccccccchhHHHHHHHHHhhhcCCCC--CCccCHHHHH
Q 000172 1834 ALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEG--GEMRSVHGQV 1911 (1935)
Q Consensus 1834 ~l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~--~~~lsV~~qV 1911 (1935)
.|++++++|++|||++|...|- .....|.++..+.+|+..|+.|.+. ...++|+++|
T Consensus 2023 ~L~~~le~f~~d~l~~W~~~p~---------------------~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv 2081 (2105)
T COG5032 2023 SLMNVLELFVRDPLIEWRRLPC---------------------FREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSV 2081 (2105)
T ss_pred HHHHHHHHHhcCcchhhhcCcc---------------------ccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHH
Confidence 9999999999999999972210 0012356677788999999998553 3579999999
Q ss_pred HHHHHHhcCchhhhhhCcccccCC
Q 000172 1912 QQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1912 ~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
+.||++|||+.|||+||+||+|||
T Consensus 2082 ~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2082 ESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred HHHHHHHcCHHHHHhhccccccCC
Confidence 999999999999999999999997
No 5
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.2e-73 Score=768.31 Aligned_cols=961 Identities=17% Similarity=0.217 Sum_probs=699.4
Q ss_pred cccCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc---c
Q 000172 808 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---K 884 (1935)
Q Consensus 808 L~Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~---~ 884 (1935)
+++++.++..-+..-++|++++.++|.+...+.. +. ........|+|-+||.+|+|.|.+||+|+.. .
T Consensus 2414 ~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~-------~~--~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~ 2484 (3550)
T KOG0889|consen 2414 IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM-------EN--TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFP 2484 (3550)
T ss_pred CCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh-------hh--hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccH
Confidence 7889999999999999999999999987654310 01 1223457899999999999999999999864 3
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhH
Q 000172 885 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 964 (1935)
Q Consensus 885 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~ 964 (1935)
-+.+...||+.|.|++|+..||.++.+... |+ .+.+++| +..|+++ +|+|.+.|.||++
T Consensus 2485 eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~-------~~----------~~~~~~E--y~lWed~--WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2485 ETMVALSYEQLGFWEEAQSLYEKAQVKARE-------GA----------IPYSESE--YKLWEDH--WIRCASELQQWDV 2543 (3550)
T ss_pred HHHHHHHHHHhhhHHHHhhHHHHHHHHHhc-------cc----------CCCCcHH--HHHHHHH--HHHHHHHHHHHHH
Confidence 478999999999999999999999987643 11 2334555 4477555 9999999999999
Q ss_pred HHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCH---HHHH
Q 000172 965 LDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDS---EEFY 1041 (1935)
Q Consensus 965 L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~---~~f~ 1041 (1935)
+.++++.- ...++-.|+|||+.+|+.+.+..... ....++...|+..+|+++.++++.+. .++.
T Consensus 2544 l~e~~k~~-----------~~~~llle~aWrlsdw~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 2610 (3550)
T KOG0889|consen 2544 LTEFGKHE-----------GNYELLLECAWRLSDWNDQKDALEQK--AKSLSDVPGFRKELYDAFLALQKKNSNGVGEFE 2610 (3550)
T ss_pred HHHHHhcc-----------CCceeeeehhccCCcchhHHHHHHHh--hhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 99998542 12356789999999999876643221 12345567888899999999977654 5788
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHH
Q 000172 1042 RKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 1121 (1935)
Q Consensus 1042 ~~i~~aR~~l~~eLsa~s~ES~~r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1121 (1935)
.+|..+-+.-+.++.+...-++..-++.+..+|++.|++|+.+|.- ...++...+.++ .-.+++.+.++
T Consensus 2611 ~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s-~l~~~n~~n~~~----------~~~d~Ksil~~ 2679 (3550)
T KOG0889|consen 2611 RLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYS-DLNDGNVQNLDN----------KAQDIKSILQT 2679 (3550)
T ss_pred HHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHH-hcccccccccch----------hHHHHHHHHHH
Confidence 8888888888889988876666666788889999999999999742 222221111111 23467899999
Q ss_pred HHHHHHhhhcchhhhhhHHHHHHHHHHhc----------------------cchhHHHHHHHHHHHHHHhcCChHHHHHH
Q 000172 1122 WSSILKRTQLHMNLLEPFMAFRRVLLQIL----------------------SCKDFTMQHLLESASTLRKGFRLSQAAAA 1179 (1935)
Q Consensus 1122 W~~rl~~~q~~~e~~epiL~~R~~vl~il----------------------~~~e~~~~~wl~~A~laRKag~~~~A~~a 1179 (1935)
|+.|++..++|+++|+.+..||+.+++++ |.|+ +.+..+++|+.|||.|-..+|.+.
T Consensus 2680 Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe-~A~~in~fakvArkh~l~~vcl~~ 2758 (3550)
T KOG0889|consen 2680 WRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHE-LAWAINRFAKVARKHGLPDVCLNQ 2758 (3550)
T ss_pred HhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHH-HHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999999999999998874 1233 477889999999999999999999
Q ss_pred HHHhhhccccccccCC--CchHHHHHHHHCC-ChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHHHhhcCChHHHHHhh
Q 000172 1180 LHELKCSIFHMIIEQS--PLPHLLNLLRAQG-QHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENY 1256 (1935)
Q Consensus 1180 L~~l~~l~~~~~i~q~--~l~~~Ak~LW~~G-e~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~wlaet~~e~~~~I~~~Y 1256 (1935)
|.++.++++. ++..+ .+.+.|+..-... +...++..++......+.+.+.|+++.+.|.++++.+...+.+ +.
T Consensus 2759 L~~iytlp~v-eiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn--~~- 2834 (3550)
T KOG0889|consen 2759 LAKIYTLPNV-EIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEAN--KA- 2834 (3550)
T ss_pred HHHHhccCcc-hHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhH--HH-
Confidence 9999887653 11111 2344677666554 7788888888777777778889999999999999988755543 22
Q ss_pred hchhcccccccccchhhhHHHHhhhhhhHHHHHHHHHhhHHHHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccch
Q 000172 1257 LKPAVSFSEDQRTTDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTD 1336 (1935)
Q Consensus 1257 ~~~Av~~~e~~~~~~~~~~~~~~~~~~~lA~f~D~~~q~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~ 1336 (1935)
+..|+++. .++.++|+.||.|+|.+++.- .++
T Consensus 2835 fs~AvQi~-----------~~l~KaW~~Wg~y~~~~f~~e----------------------------------~~n--- 2866 (3550)
T KOG0889|consen 2835 FSAAVQID-----------DGLGKAWAEWGKYLDNRFNKE----------------------------------PVN--- 2866 (3550)
T ss_pred HHHHHHHH-----------hhhHHHHHHHHHHHHHHHhcc----------------------------------Ccc---
Confidence 34476653 245699999999999987641 000
Q ss_pred hhHHHHHHHHHHhhcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchH-HHHHHHHHHHhcCcc--HHHHHHHHHhhh
Q 000172 1337 YSIKIQELQKQLAMDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVR-VVFRLVSLWFSLSSR--QNVIKNMVDTID 1413 (1935)
Q Consensus 1337 y~~~~~~l~~~~~lD~~e~~~l~~~r~~fl~~Al~~Yl~sL~~s~~~~~~-~i~RllsLWl~~~~~--~~v~~~~~~~~~ 1413 (1935)
..+.+.|+.||++++...+.+..+ -+.|+ |||---++ ..+.+++.++++
T Consensus 2867 --------------------------i~~a~~avsCyLqA~~~~~~skaRk~iakv--LwLls~dda~~~l~~~~~k~l~ 2918 (3550)
T KOG0889|consen 2867 --------------------------ISFACNAVSCYLQAARLYNSSKARKLIAKV--LWLLSFDDSLGTLGDVFDKFLG 2918 (3550)
T ss_pred --------------------------cHHHHHHHHHHHHHhccccchhhHHHHHHH--HHHHHhccccchHHHHHHHhhc
Confidence 136678999999999988665443 45566 89876443 358899999999
Q ss_pred cccccchhhhhHHHHhhcCCCccccccccHHHHHHHHHHHHHHhCCchhHHHHHHhcccc-------------chh----
Q 000172 1414 EVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPYHTIFQLLALANGD-------------RIK---- 1476 (1935)
Q Consensus 1414 ~vp~~kfl~~lpQL~srL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~~~ly~L~a~~~s~-------------~~~---- 1476 (1935)
.||.+.|++|+|||+..+.+.+. +.+..++.++++.||||+.|+|.+....- ..+
T Consensus 2919 ~ip~~~wl~~IPQLl~sLs~~e~--------~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~~~p 2990 (3550)
T KOG0889|consen 2919 EIPVWNWLYFIPQLLTSLSKKEA--------KLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDTTDP 2990 (3550)
T ss_pred cCCchhhhhhhHHHHhhccccch--------hHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999998652 56889999999999999999997753210 000
Q ss_pred --------hhhccccc------hhhh-----hhHHHHHHHHHHHHH----h-----------------------------
Q 000172 1477 --------DKQRSRNS------FVVD-----MDKKLAAENLLEELS----S----------------------------- 1504 (1935)
Q Consensus 1477 --------~~~r~~~~------~~v~-----~~r~~aa~~il~~l~----~----------------------------- 1504 (1935)
..+|+-.. ..++ .-+..-.+.+++..- .
T Consensus 2991 ~~r~~~i~~~~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~al~ 3070 (3550)
T KOG0889|consen 2991 MGRPSKISQKQRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVNALL 3070 (3550)
T ss_pred CCcHHHHHHHhhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHHHHH
Confidence 00010000 0011 001111111111100 0
Q ss_pred -------------------------------------------hHHHHHHHHH------HHHHHHHHHHhhhhccccccc
Q 000172 1505 -------------------------------------------YHGAIIRQMK------QMVDVYIKLAELETRREDTNK 1535 (1935)
Q Consensus 1505 -------------------------------------------~~~~~~~~~~------~l~~~~~~La~~~~~~e~~~~ 1535 (1935)
+..+++.++. .+.++..+|..|....+...+
T Consensus 3071 ~~~~~~~~~r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~k~~ 3150 (3550)
T KOG0889|consen 3071 NIDGIQNGNRLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLESKVD 3150 (3550)
T ss_pred HHhhhccccccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHh
Confidence 0000111111 111122222222221111111
Q ss_pred cccchhhhhh----ccccccccccccccCCCCCCcccC-----CCccccccccceEEEe-cCCCcceEEEEEecCCcEEE
Q 000172 1536 RIQLPREIRC----LRQLELVPVVTATVPIDCTCQYNE-----GSFPYFKGLAESVMVM-NGINAPKVVECFGSDGHKYR 1605 (1935)
Q Consensus 1536 ~~~~~~~l~~----l~~l~~vp~~t~~lpi~~~~~y~~-----g~~~~I~~f~~~~~v~-~s~~~Pk~i~~~gsdGk~y~ 1605 (1935)
+.|....++. ++... |- + -.+..+|+|.. ..+..|.+|+|+++++ +...+-||+++||+||+.|.
T Consensus 3151 ~~pk~~~LE~~s~~L~~F~--hq-~--~evEiPGqyl~~k~~~~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~ 3225 (3550)
T KOG0889|consen 3151 RFPKKLNLEEKSRFLSNFS--HQ-F--DEVEIPGQYLLDKSNNNYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYP 3225 (3550)
T ss_pred cccccccHHhhchHHhccc--cc-C--CcccCChHHhcccchhhhhhhHHHhccchhhhcccceeEEEEEEeccCCeecc
Confidence 1111111111 11111 11 1 23344556632 2357899999999877 67779999999999999997
Q ss_pred eeee-cCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCC
Q 000172 1606 QLAK-SGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1684 (1935)
Q Consensus 1606 ~L~K-~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~ 1684 (1935)
|.+. +|.-+-|.++||+|+++++|..|.+++||+||++.+.++.+||+|++.+|+|.+|+.++|++|+..++...+...
T Consensus 3226 ~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~ 3305 (3550)
T KOG0889|consen 3226 FAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSP 3305 (3550)
T ss_pred eeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCc
Confidence 6554 467889999999999999999999999999999999999999999999999999999999999988776555221
Q ss_pred CCCCCCch---hhHhhhhhcc----hhhHHHHHHHHHhhhhh--hHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhh
Q 000172 1685 RYGIGDWS---FLKCREHMSN----VKDKRIAFQEVCENFRP--VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYI 1755 (1935)
Q Consensus 1685 ~~~~~~~~---~~~~~~~~~~----~~~k~~~f~~i~~~~~p--vl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYI 1755 (1935)
. .|.... +.+|+..... .+.++.+|+.+...+.| ++++||.++|+++.++|.+|++|+.++|.+++.+|+
T Consensus 3306 D-~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~ 3384 (3550)
T KOG0889|consen 3306 D-DPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYM 3384 (3550)
T ss_pred c-hhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHH
Confidence 1 111111 1233322111 23467899999999999 999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEecCCCcEEEeecchhhc-cccCCCCCCCCCccccHHHHhhccccccchhhHHHHHHHHHHHhcChHH
Q 000172 1756 VGLGDRHAMNILIDQATAEVVHIDLGVAFE-QGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEA 1834 (1935)
Q Consensus 1756 LGLGDRH~~NILid~~TG~vvHIDfg~~F~-~g~~l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~~~~~ 1834 (1935)
+.+|.|.|+.+++.+.||.+..-||-+... ..+.+...|.|||||||||+.++|-.|+||.+...+.++.+|+-++.+.
T Consensus 3385 lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p~~~ 3464 (3550)
T KOG0889|consen 3385 LNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEPDFE 3464 (3550)
T ss_pred HhcCCCCccceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999884 4456888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCcccccChhHHHhhhhccccccccCCCCCccccccchhHHHHHHHHHhhhcC---CCCCCccCHHHHH
Q 000172 1835 LLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDG---YEGGEMRSVHGQV 1911 (1935)
Q Consensus 1835 l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g---~~~~~~lsV~~qV 1911 (1935)
+-.++..|+||++++|.....+.. ..++......| ..++.|..|+.. .+.| .......+
T Consensus 3465 l~~~l~~~~RDE~~~w~~~~~~~~-------------~~~~~~~~~v~----~~v~~i~rrv~~~~~~~~g-e~~~~~t~ 3526 (3550)
T KOG0889|consen 3465 LDPYLQLFFRDEIISWFKQQTKGV-------------PADPLLEEMVN----SNVDLIMRRVASLSSENSG-ELPDNQTV 3526 (3550)
T ss_pred hhHHHHHHHHHHHHHHhhccccCC-------------cCChhhhhhHH----HHHHHHhhhhhhhcccccc-CCCCCccH
Confidence 999999999999999975321110 00111111112 234444444432 1222 22333379
Q ss_pred HHHHHHhcCchhhhhhCcccccCC
Q 000172 1912 QQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1912 ~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
..||++|+|++|||||+|.|+|||
T Consensus 3527 ~~lis~A~s~~nLaqmDp~w~pWl 3550 (3550)
T KOG0889|consen 3527 IDLISQATSPDNLAQMDPTWHPWL 3550 (3550)
T ss_pred HHHHHHhcChhhhhcCCccccccC
Confidence 999999999999999999999997
No 6
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=1.1e-66 Score=614.53 Aligned_cols=273 Identities=66% Similarity=1.174 Sum_probs=257.3
Q ss_pred cccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcC
Q 000172 1575 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1654 (1935)
Q Consensus 1575 I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs 1654 (1935)
|.+|.|+|.|++|+++||+|+++|+||+.|.||+| |+||+|||+|+||||++||++|++++||++|+|.|+||.|||||
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K-~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls 79 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLK-GGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLS 79 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEec-CCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecC
Confidence 56899999999999999999999999999999999 46999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhc-----chhhHHHHHHHHHhhhhhhHHHHHHHhc
Q 000172 1655 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMS-----NVKDKRIAFQEVCENFRPVLHYFFLERF 1729 (1935)
Q Consensus 1655 ~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1729 (1935)
+++||||||+|++||++|+...+ |.+.++.|.++....+++.+. ...+++++|++++++++|++++||.+.|
T Consensus 80 ~~~GLIe~v~~~~tl~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~ 156 (279)
T cd05171 80 PRAGILEWVDGTIPLGEYLVGAT---GAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKF 156 (279)
T ss_pred CCceEEEECCCChhHHHHHHHhh---hcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHC
Confidence 99999999999999999997543 567777777766656655542 2356789999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhcc
Q 000172 1730 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMG 1809 (1935)
Q Consensus 1730 ~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG 1809 (1935)
++|++||.+|++||+|+|++||+|||||||||||+|||||+.||+|+|||||++|++|+.+++||.|||||||||+++||
T Consensus 157 ~~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 157 LDPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1810 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1810 ~~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
++|++|.|+.+|++++++||++++.|+++|++|+|||+++|+
T Consensus 237 ~~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 237 ITGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 999999999999999999999999999999999999999996
No 7
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=3.9e-65 Score=607.95 Aligned_cols=276 Identities=37% Similarity=0.652 Sum_probs=244.6
Q ss_pred cccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcC
Q 000172 1575 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1654 (1935)
Q Consensus 1575 I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs 1654 (1935)
|.+|+++|.|++|+++||+|+++|+||+.|+||+| |+||+|||+||||||++||.+|+++++|++|+|.|+||.||||+
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK-~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFK-GREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEec-CCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 67899999999999999999999999999999999 56999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCchHHHhhhhccCCCC---C-------C------CCCCCCchhhHhhhhhc-------------chhh
Q 000172 1655 PSAGILEWVDGTVPLGDYLIGSTRNGGA---H-------G------RYGIGDWSFLKCREHMS-------------NVKD 1705 (1935)
Q Consensus 1655 ~~~GLIE~v~~t~tL~~il~~~~~~~~~---~-------~------~~~~~~~~~~~~~~~~~-------------~~~~ 1705 (1935)
+++||||||+|+.||.+++..+++..+. . . ...+.+..+.+....+. +...
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999999999998754332211 0 0 00011111111111111 1134
Q ss_pred HHHHHHHHHhhhhh-hHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1706 KRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1706 k~~~f~~i~~~~~p-vl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
++++|.+++++++| .++++++..+++|++||.+|++||+|+|++||+|||||||||||+|||||+.||+++|||||++|
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f 239 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCF 239 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhh
Confidence 68899999999888 67888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccHHHHhhccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1785 EQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1785 ~~g~~l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
++|+.+++||.|||||||||+++||++|++|.|+.+|+.++++||++++.|+++|++|+||||++|+
T Consensus 240 ~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 240 EKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred cccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996
No 8
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=1.1e-64 Score=588.05 Aligned_cols=247 Identities=23% Similarity=0.373 Sum_probs=236.5
Q ss_pred cccccceEEEe-cCCCcceEEEEEecCCcEEEeeeec-CCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEE
Q 000172 1575 FKGLAESVMVM-NGINAPKVVECFGSDGHKYRQLAKS-GNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP 1652 (1935)
Q Consensus 1575 I~~f~~~~~v~-~s~~~Pk~i~~~gsdGk~y~~L~K~-G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViP 1652 (1935)
|.+|.|+++|+ +++++||+|+++|+||+.|+||+|+ |++|+|+|+||||+|+++|++|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999876 7889999999999999999999994 568999999999999999999999999999999999999999
Q ss_pred cCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhh--hHHHHHHHhcc
Q 000172 1653 FTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP--VLHYFFLERFL 1730 (1935)
Q Consensus 1653 Ls~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p--vl~~~f~~~f~ 1730 (1935)
|++++|||||++++.||.+++.. |.++|+++++++.| +|++||.++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~------------------------------~~~~~~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED------------------------------KLEIYNEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999998631 67889999999666 99999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC-CCCCCCCccccHHHHhhcc
Q 000172 1731 QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMG 1809 (1935)
Q Consensus 1731 ~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l-~~pE~VPFRLTrniv~~mG 1809 (1935)
+|++||.+|++||+|+|++||+|||+|||||||+|||||..||+|+|||||++|++|+.+ ++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999874 8999999999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1810 VTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1810 ~~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
++|+||+|+.+|++++++||++++.|+++|++|+||||++|.
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWH 252 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhc
Confidence 999999999999999999999999999999999999999996
No 9
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=1.6e-64 Score=598.95 Aligned_cols=276 Identities=38% Similarity=0.690 Sum_probs=246.1
Q ss_pred cccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcC
Q 000172 1575 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1654 (1935)
Q Consensus 1575 I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs 1654 (1935)
|.+|+|+|.|++|+++||+|+++|+||+.|+||+| ++||+|||+|++|+|+++|.+|++++||++|+|.++||.|||++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K-~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLK-GHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeec-CCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 67999999999999999999999999999999999 56999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHh--hhhhcchhhHHHHHHHHHhhhhh-hHHHHHHHhccC
Q 000172 1655 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKC--REHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQ 1731 (1935)
Q Consensus 1655 ~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~ 1731 (1935)
+++||||||+|++||.+|+..+....+.+.......+....+ ...+ ...+|.++|++++++.+| ++++||...|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~ 158 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNL-TLIQKLEVFEYALNNTPGDDLRKILWLKSPS 158 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhCCC
Confidence 999999999999999999987554433211000000000000 0111 223678999999998776 999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC-CCCCCCCCccccHHHHhhccc
Q 000172 1732 PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGV 1810 (1935)
Q Consensus 1732 p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~-l~~pE~VPFRLTrniv~~mG~ 1810 (1935)
|..|+.+|++|++|+|++||+|||||||||||+|||||+.||+++|||||++|++|+. +++||.|||||||||+++||+
T Consensus 159 ~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~lG~ 238 (280)
T cd05169 159 SEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNALGV 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999986 689999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1811 TGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1811 ~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
+|++|.|+.+|+.++++||++++.|+++|++|+||||++|.+
T Consensus 239 ~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~~ 280 (280)
T cd05169 239 SGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWRL 280 (280)
T ss_pred CCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCccccccC
Confidence 999999999999999999999999999999999999999963
No 10
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=2.1e-62 Score=563.28 Aligned_cols=233 Identities=35% Similarity=0.663 Sum_probs=225.5
Q ss_pred cccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcC
Q 000172 1575 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1654 (1935)
Q Consensus 1575 I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs 1654 (1935)
|.+|.+++.|++|+++||+++++|+||+.|+||+|. +||+|||+|+||+|+++|.+|+++++|++|+|.+++|+|+|++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~-~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKG-GEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEEC-CCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 678999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChH
Q 000172 1655 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1734 (1935)
Q Consensus 1655 ~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1734 (1935)
+++||||||+++.||++|+.. +.+++||.+.+++|++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~ 116 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEA 116 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHH
Confidence 999999999999999998742 4577889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC-CCCCCCCCccccHHHHhhcccccc
Q 000172 1735 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LKTPERVPFRLTRDIIDGMGVTGV 1813 (1935)
Q Consensus 1735 w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~-l~~pE~VPFRLTrniv~~mG~~Gv 1813 (1935)
|+.+|++|++|+|++|++|||||||||||+|||||+.||+++|||||++|++|+. +++||.|||||||||+++||+.|+
T Consensus 117 ~~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~ 196 (235)
T cd05172 117 FLSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKA 196 (235)
T ss_pred HHHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999986 999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1814 EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1814 eG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
+|.|+.+|+.++++||++++.|+++|++|+|||+.+|.
T Consensus 197 ~G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~ 234 (235)
T cd05172 197 DGLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWK 234 (235)
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhc
Confidence 99999999999999999999999999999999999995
No 11
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=4.8e-61 Score=553.15 Aligned_cols=236 Identities=48% Similarity=0.902 Sum_probs=227.9
Q ss_pred cccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcC
Q 000172 1575 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1654 (1935)
Q Consensus 1575 I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs 1654 (1935)
|.+|+++++|++|+++||+++++|+||+.|.||+|. +||||||+|++|+|+++|.+|.++++|++|+|.++||+|+|++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~-~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~ 79 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKP-KDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLN 79 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcC
Confidence 578999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChH
Q 000172 1655 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1734 (1935)
Q Consensus 1655 ~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1734 (1935)
+++||||||+|++||++++...+ +|++++||.+.|++|.+
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~----------------------------------------~~~l~~~~~~~~~~~~~ 119 (237)
T cd00892 80 EECGIIEWVPNTATLRSILLEIY----------------------------------------PPVFHEWFLENFPDPSA 119 (237)
T ss_pred CCCceEEECCCCccHHHHHHHhC----------------------------------------CHHHHHHHHHHCcCHHH
Confidence 99999999999999999875311 36789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccc
Q 000172 1735 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1814 (1935)
Q Consensus 1735 w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~Gve 1814 (1935)
|+.+|++|+.|+|++|++|||||+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 120 ~~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~ 199 (237)
T cd00892 120 WLKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE 199 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1815 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1815 G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
|.|+.+|+.++++||++++.|+++|++|+||||++|.
T Consensus 200 g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~ 236 (237)
T cd00892 200 GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWS 236 (237)
T ss_pred CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhcc
Confidence 9999999999999999999999999999999999996
No 12
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1.1e-57 Score=520.85 Aligned_cols=222 Identities=49% Similarity=0.878 Sum_probs=215.4
Q ss_pred cccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcC
Q 000172 1575 FKGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFT 1654 (1935)
Q Consensus 1575 I~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs 1654 (1935)
|.+|.+++.|++|+++||+|+++|+||+.|.||+|. +||+|||+|++|+|+++|.+|++++||++|++.++||.|+|++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~-~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKG-GEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 678999999999999999999999999999999994 6999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChH
Q 000172 1655 PSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAY 1734 (1935)
Q Consensus 1655 ~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~ 1734 (1935)
+++||||||+|+.|++. ++++||...|+++++
T Consensus 80 ~~~GliE~v~~~~sl~~------------------------------------------------~l~~~~~~~~~~~~~ 111 (222)
T cd05164 80 SRSGLIEWVEGTTTLKP------------------------------------------------VLKKWFWLQFPDPEQ 111 (222)
T ss_pred CCCceEEEcCCcchHHH------------------------------------------------HHHHHHHHHCcCHHH
Confidence 99999999999999872 356788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccc
Q 000172 1735 WFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE 1814 (1935)
Q Consensus 1735 w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~Gve 1814 (1935)
||.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++
T Consensus 112 ~~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~ 191 (222)
T cd05164 112 WFAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE 191 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000172 1815 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1845 (1935)
Q Consensus 1815 G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~D 1845 (1935)
|.|+.+|+.++++||++++.|+++|++|+||
T Consensus 192 G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 192 GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999997
No 13
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=8.6e-53 Score=481.50 Aligned_cols=218 Identities=36% Similarity=0.618 Sum_probs=210.0
Q ss_pred ccccceEEEecCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCC
Q 000172 1576 KGLAESVMVMNGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTP 1655 (1935)
Q Consensus 1576 ~~f~~~~~v~~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~ 1655 (1935)
.+|.+.++|++|+++||+++++|+||+.|+||+|. +||+|||+|++|+|+++|.+|++++ ++++.+++|.|+|+++
T Consensus 2 ~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~-~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 2 AIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKN-GDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CccCCceEEEcccCCCEEEEEEccCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 56889999999999999999999999999999995 5999999999999999999999886 6999999999999999
Q ss_pred CCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHH
Q 000172 1656 SAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW 1735 (1935)
Q Consensus 1656 ~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w 1735 (1935)
++||||||+|+.|++ +.+++||...++++++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999987 35678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccch
Q 000172 1736 FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG 1815 (1935)
Q Consensus 1736 ~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~GveG 1815 (1935)
+++|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++++.+..||.|||||||||+++||+.|++|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999887899999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHccC
Q 000172 1816 VFRRCCEKTLSVMRTNKEALLTIVEVFIHD 1845 (1935)
Q Consensus 1816 ~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~D 1845 (1935)
.|+.+|+.++.+||+|++.|+++|++|++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 999999999999999999999999999987
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=6.8e-51 Score=490.00 Aligned_cols=249 Identities=24% Similarity=0.378 Sum_probs=219.9
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHH
Q 000172 1556 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1632 (1935)
Q Consensus 1556 t~~lpi~~~~~y~~g~~~~I~~f~-~~~~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL 1632 (1935)
+..+|++|.. .+.+|. ++++|++|+++|+++++.|+| |+.|.+|+|. +||||||++++|++++||.+|
T Consensus 48 ~~~lP~~p~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~ 118 (352)
T cd00891 48 EFTLPLDPRL--------EIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKV-GDDLRQDMLTLQMIRLMDKIW 118 (352)
T ss_pred CccCCCCCce--------EEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEecc-CCchhHHHHHHHHHHHHHHHH
Confidence 4567777643 345554 568999999999999999999 9999999995 599999999999999999999
Q ss_pred HcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHH
Q 000172 1633 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1712 (1935)
Q Consensus 1633 ~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1712 (1935)
+++. .+|.++||.|+|+++++||||||+|+.|+++|........+ +|.
T Consensus 119 ~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~---------------------------~~~- 166 (352)
T cd00891 119 KKEG----LDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG---------------------------AFK- 166 (352)
T ss_pred HHCC----CCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHhcCcccc---------------------------ccc-
Confidence 9875 78999999999999999999999999999998764221111 111
Q ss_pred HHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC-CC
Q 000172 1713 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK 1791 (1935)
Q Consensus 1713 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~-l~ 1791 (1935)
.+.+++|+.+.++++..|..+|.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++. +.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~-~G~~~HIDFG~ilg~~~~~~~ 240 (352)
T cd00891 167 -----DNPLMNWLKKKNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTK-TGHLFHIDFGHFLGNFKKKFG 240 (352)
T ss_pred -----cchHHHHHHHhCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEECC-CCCEEEEehHHhhccCCccCC
Confidence 12467899999999999999999999999999999999999999999999995 999999999999997653 33
Q ss_pred -CCCCCCccccHHHHhhccccccc--hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1792 -TPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1792 -~pE~VPFRLTrniv~~mG~~Gve--G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
.||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|++.|++++++|+++++.+|.
T Consensus 241 ~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~ 303 (352)
T cd00891 241 IKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQ 303 (352)
T ss_pred CCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccC
Confidence 69999999999999999999976 9999999999999999999999999999999998875
No 15
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=1e-50 Score=487.52 Aligned_cols=287 Identities=23% Similarity=0.431 Sum_probs=245.0
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEecCC---cEEEeeeecCCCcchhhHHHHHHHHHHHHH
Q 000172 1556 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG---HKYRQLAKSGNDDLRQDAVMEQFFGLVNTF 1631 (1935)
Q Consensus 1556 t~~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gsdG---k~y~~L~K~G~dDlRqD~r~~Qlf~lvN~l 1631 (1935)
+..+|++|.. .|.++ .+++.|++|+++|+++++.|+|| +.|.+|+|. +||||||+++||++++||.+
T Consensus 52 ~~~lP~dp~~--------~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~-gDDLRqD~l~~Ql~~lm~~i 122 (350)
T cd00896 52 PIPLPLDPSI--------EITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKV-GDDLRQDQLVIQIISLMDRL 122 (350)
T ss_pred CCcCCCCCCe--------EEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecC-CcchhHhHHHHHHHHHHHHH
Confidence 3456777642 33444 36799999999999999999999 999999995 59999999999999999999
Q ss_pred HHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHH
Q 000172 1632 LRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQ 1711 (1935)
Q Consensus 1632 L~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~ 1711 (1935)
|+++. ++|.++||+|+|+++++|+||||+ +.|+++|+....
T Consensus 123 l~~~~----ldl~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~---------------------------------- 163 (350)
T cd00896 123 LKKEN----LDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKYG---------------------------------- 163 (350)
T ss_pred HHhCC----CCceeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH----------------------------------
Confidence 99875 899999999999999999999999 999999874310
Q ss_pred HHHhhhhhhHHHHHHHhccCChHH----HHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000172 1712 EVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1787 (1935)
Q Consensus 1712 ~i~~~~~pvl~~~f~~~f~~p~~w----~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g 1787 (1935)
.+.+||...++++..| ..+|.||++|+|+|||+||||||||||++|||||. ||+++|||||++|+++
T Consensus 164 --------~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~-~G~~~HIDFG~ilg~~ 234 (350)
T cd00896 164 --------GILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTK-DGKLFHIDFGYILGRD 234 (350)
T ss_pred --------HHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcC-CCCEEEEEhHHhhCCC
Confidence 0467778888888774 79999999999999999999999999999999995 9999999999999988
Q ss_pred cCCCCCCCCCccccHHHHhhccccccch--hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccc
Q 000172 1788 LMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMD 1865 (1935)
Q Consensus 1788 ~~l~~pE~VPFRLTrniv~~mG~~GveG--~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~ 1865 (1935)
+ .|+.||||||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++|+.+|..++
T Consensus 235 p---~~~~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~----------- 300 (350)
T cd00896 235 P---KPFPPPMKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDP----------- 300 (350)
T ss_pred C---CCCCCCeeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCH-----------
Confidence 4 588899999999999999999999 999999999999999999999999999999988774321
Q ss_pred cccccCCCCCccccccchhHHHHHHHHHhhhcCCCCCCccCHHHHHHHHHHHhcCch--hhhhhCcccccCC
Q 000172 1866 DDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGAWL 1935 (1935)
Q Consensus 1866 ~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~~~~lsV~~qV~~LI~~Atd~~--NLa~m~~gW~Pwl 1935 (1935)
..++..+++|+.-... .-.....+..||++|.+.- ++.-+++.|+.||
T Consensus 301 --------------------~~~i~~l~~rf~l~~s--~~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 301 --------------------DKAILKVQEKFRLDLS--DEEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred --------------------HHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 2357778888763211 1124567899999998763 7778888887765
No 16
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=4.3e-50 Score=481.84 Aligned_cols=248 Identities=20% Similarity=0.347 Sum_probs=216.0
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHH
Q 000172 1556 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1632 (1935)
Q Consensus 1556 t~~lpi~~~~~y~~g~~~~I~~f~-~~~~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL 1632 (1935)
...+|++|... +.++. ++++|++|+++|++|++.|+| |+.|.+|+|. +||||||++++|++++||++|
T Consensus 48 ~~~lP~~p~~~--------~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~-gDDLRQD~l~~Qli~lm~~i~ 118 (353)
T cd05166 48 KCRLPLNPALD--------VKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKA-GDDLRQDMLVLQMINIMDKIW 118 (353)
T ss_pred CCccCCCCceE--------EEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeC-CCcccHHHHHHHHHHHHHHHH
Confidence 34567776432 33332 688999999999999999999 9999999995 599999999999999999999
Q ss_pred HcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHH
Q 000172 1633 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1712 (1935)
Q Consensus 1633 ~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1712 (1935)
+++. .+|++++|.|+|+++++|+||||+|+.|+++|.... |.... |.
T Consensus 119 ~~~~----ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~~----g~~~~------------------------~~- 165 (353)
T cd05166 119 LQEG----LDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVEE----GLTGS------------------------FK- 165 (353)
T ss_pred HhCC----CCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHHh----Ccccc------------------------cc-
Confidence 9875 789999999999999999999999999999986531 11000 00
Q ss_pred HHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC--
Q 000172 1713 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1790 (1935)
Q Consensus 1713 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l-- 1790 (1935)
.+.+++||.+.++++..|..+|.+|++|+|+|||+|||||+||||++||||| .+|+++|||||++|++++..
T Consensus 166 -----~~~l~~~l~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~ 239 (353)
T cd05166 166 -----DRPIAKWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGG 239 (353)
T ss_pred -----chhHHHHHHHhCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhccccccccc
Confidence 0247789999999999999999999999999999999999999999999999 59999999999999987643
Q ss_pred CCCCCCCccccHHHHhhcccc----ccchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1791 KTPERVPFRLTRDIIDGMGVT----GVEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1791 ~~pE~VPFRLTrniv~~mG~~----GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
-.||+||||||++|+++||.. +..|.|+..|+.++.+||+|.+.|++++++|+++++.+|.
T Consensus 240 ~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~ 304 (353)
T cd05166 240 FKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELS 304 (353)
T ss_pred CCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccC
Confidence 258999999999999999854 3457999999999999999999999999999999999996
No 17
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=6.7e-50 Score=469.23 Aligned_cols=268 Identities=21% Similarity=0.329 Sum_probs=227.7
Q ss_pred CCcceEEEEEecCCc--EEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCC
Q 000172 1588 INAPKVVECFGSDGH--KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDG 1665 (1935)
Q Consensus 1588 ~~~Pk~i~~~gsdGk--~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~ 1665 (1935)
++|||+.+..|+.+. .|.+|+|. +||||||+++||+|++||.+|+++. ++|.++||+|+|+++++||||||+|
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~~~~~i~~~~~----l~l~l~~Y~vip~~~~~GlIE~V~n 89 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKT-GDDLRQELLAMQLIQQFDRIFKEEG----LPLWLRPYEILVTSSNSGLIETIPD 89 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHCC----CCceeeeEEEEEccCCceeEEEeCC
Confidence 468888888888755 89999995 5999999999999999999999864 8899999999999999999999999
Q ss_pred CCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCC-hHHHHHHHHHHH
Q 000172 1666 TVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQP-AYWFEKRLAYTR 1744 (1935)
Q Consensus 1666 t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p-~~w~~~R~~Ftr 1744 (1935)
++|+++|...... ..|.+++||.+.|++| +.|+.+|.+|++
T Consensus 90 s~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~ 131 (293)
T cd05168 90 TVSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIE 131 (293)
T ss_pred chhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999998643110 1256788999999875 689999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccc--hhhHHHHH
Q 000172 1745 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCE 1822 (1935)
Q Consensus 1745 S~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~Gve--G~Fr~~~~ 1822 (1935)
|+|+|||+||||||||||++|||||+ +|+++|||||++|++++....||+|||||||+|+++||+.|.+ |.|+.+|+
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~ 210 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFL 210 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHH
Confidence 99999999999999999999999997 9999999999999999887889999999999999999999987 99999999
Q ss_pred HHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccccccccCCCCCccccccchhHHHHHHHHHhhhcCCCCC
Q 000172 1823 KTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGG 1902 (1935)
Q Consensus 1823 ~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~~ 1902 (1935)
.++.+||++++.|++++++|+++|-+..... ....+..+++|+.-..
T Consensus 211 ~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-------------------------------~~~~i~~l~~r~~l~~-- 257 (293)
T cd05168 211 KGFMALRKHVDRIILLVEIMQSDSKLPCFKA-------------------------------GEFTIQQLRDRFMLNL-- 257 (293)
T ss_pred HHHHHHHhchHHHHHHHHHHccCCCCccccC-------------------------------chHHHHHHHHHhCCCC--
Confidence 9999999999999999999999963321100 0124667777775411
Q ss_pred CccCHHHHHHHHHHHhcCchhhhhhCccccc
Q 000172 1903 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGA 1933 (1935)
Q Consensus 1903 ~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~P 1933 (1935)
....+..++..||++|.+. .-.++|-.|+-
T Consensus 258 se~~a~~~~~~lI~~s~~~-~~t~~yD~~q~ 287 (293)
T cd05168 258 TEEQLEVFVDELINQSLDN-WRTRLYDKFQY 287 (293)
T ss_pred CHHHHHHHHHHHHHHHHhc-hhHHHHHHHHH
Confidence 2234678999999999874 56667766654
No 18
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=5.5e-49 Score=469.49 Aligned_cols=249 Identities=20% Similarity=0.350 Sum_probs=216.9
Q ss_pred ccccCCCCCCcccCCCcccccccc-ceEEEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHH
Q 000172 1556 TATVPIDCTCQYNEGSFPYFKGLA-ESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1632 (1935)
Q Consensus 1556 t~~lpi~~~~~y~~g~~~~I~~f~-~~~~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL 1632 (1935)
+..+|++|.. .|.++. ++++|++|+++|+++++.++| |+.|.+|+|.| ||||||++++|++++||++|
T Consensus 49 ~~~lPl~P~~--------~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~g-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd05177 49 SCCLPLNPAL--------RVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTG-DDLRQDMLVLQIVRVMDNIW 119 (354)
T ss_pred CCccCCCCCe--------EEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCC-CcccHHHHHHHHHHHHHHHH
Confidence 3457777642 455665 478999999999999999999 89999999965 99999999999999999999
Q ss_pred HcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHH
Q 000172 1633 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1712 (1935)
Q Consensus 1633 ~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1712 (1935)
+++. .+|+++||+|+|+++++|+||||+|+.|+++|.... |.... ..
T Consensus 120 ~~~~----ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~----~~~~~--------------~~----------- 166 (354)
T cd05177 120 LQEG----LDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRES----GLIGP--------------LK----------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChHhHHHHHHhh----CCCcc--------------cc-----------
Confidence 9875 789999999999999999999999999999987532 11000 00
Q ss_pred HHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCC-
Q 000172 1713 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLK- 1791 (1935)
Q Consensus 1713 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~- 1791 (1935)
.+.+.+||...++++.+|..+|.+|++|+|+|||+||||||||||++||||+ .||+++|||||++||+++.+.
T Consensus 167 -----~~~l~~~~~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~ 240 (354)
T cd05177 167 -----ENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGS 240 (354)
T ss_pred -----hhhHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccC
Confidence 1246778888899999999999999999999999999999999999999999 599999999999999987643
Q ss_pred -CCCCCCccccHHHHhhccccccch----hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1792 -TPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1792 -~pE~VPFRLTrniv~~mG~~GveG----~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
.||++|||||++|+++||..|.++ .|+..|..++.+||+|.+.|++++++|+++|+.+|..
T Consensus 241 ~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~ 306 (354)
T cd05177 241 IKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKD 306 (354)
T ss_pred CCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCc
Confidence 589999999999998876666553 6999999999999999999999999999999999863
No 19
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=5.8e-49 Score=471.15 Aligned_cols=249 Identities=22% Similarity=0.358 Sum_probs=216.1
Q ss_pred cccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEecC-----CcEEEeeeecCCCcchhhHHHHHHHHHHHH
Q 000172 1557 ATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD-----GHKYRQLAKSGNDDLRQDAVMEQFFGLVNT 1630 (1935)
Q Consensus 1557 ~~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gsd-----Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~ 1630 (1935)
..+|++|... +.++ .++++|++|+++|++|++.|+| |+.|.+|+|. +||||||++++|+|++||.
T Consensus 54 ~~lPl~P~~~--------v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~-gDDLRQD~l~lQli~lm~~ 124 (366)
T cd05165 54 FQSPLNPSLK--------LGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKN-GDDLRQDMLTLQILRIMDS 124 (366)
T ss_pred CCCCCCCcee--------EeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEec-CCcccHHHHHHHHHHHHHH
Confidence 4567776432 3333 3568999999999999999998 6999999995 5999999999999999999
Q ss_pred HHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHH
Q 000172 1631 FLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAF 1710 (1935)
Q Consensus 1631 lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f 1710 (1935)
+|+++. .+|++++|+|+|+++++|+||||+|+.|+++|........ . ..|
T Consensus 125 i~~~~~----ldL~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~~~-------~-------------------~~f 174 (366)
T cd05165 125 IWKEEG----LDLRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGGNA-------T-------------------AAF 174 (366)
T ss_pred HHHhCC----CCceeEEEEEEEecCCceEEEEeCCchhHHHHHHhccccc-------c-------------------ccc
Confidence 999875 7999999999999999999999999999999875321000 0 001
Q ss_pred HHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC-
Q 000172 1711 QEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM- 1789 (1935)
Q Consensus 1711 ~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~- 1789 (1935)
. .+.+.+||.+.+++++.|..+|.+|++|+|+||++|||||+||||++|||||+ ||+++|||||++|+.++.
T Consensus 175 ~------~~~l~~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~~ 247 (366)
T cd05165 175 K------KEALLHWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKSK 247 (366)
T ss_pred C------cHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCcc
Confidence 1 13567899999988899999999999999999999999999999999999996 999999999999998764
Q ss_pred CC-CCCCCCccccHHHHhhccccccc------hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1790 LK-TPERVPFRLTRDIIDGMGVTGVE------GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1790 l~-~pE~VPFRLTrniv~~mG~~Gve------G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
++ .||+||||||++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|++++++|+..++.+++
T Consensus 248 ~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~ 316 (366)
T cd05165 248 FGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELT 316 (366)
T ss_pred CCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccC
Confidence 55 59999999999999999987766 8999999999999999999999999999998888775
No 20
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=1.3e-49 Score=450.27 Aligned_cols=199 Identities=40% Similarity=0.700 Sum_probs=190.6
Q ss_pred EeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCC
Q 000172 1605 RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHG 1684 (1935)
Q Consensus 1605 ~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~ 1684 (1935)
.|++| |+||+|||+|++|+|+++|.+|++++|+++|++.++||.|+|+++++|+||||+|++|++++
T Consensus 1 ~~~~K-~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------ 67 (202)
T smart00146 1 AVIFK-GGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------ 67 (202)
T ss_pred Ceeec-CCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------------
Confidence 37899 56999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 000172 1685 RYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAM 1764 (1935)
Q Consensus 1685 ~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~ 1764 (1935)
+++||.+.|++|..|+.+|++|++|+|++|++|||+|+|||||+
T Consensus 68 ------------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~ 111 (202)
T smart00146 68 ------------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHND 111 (202)
T ss_pred ------------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 46788999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcEEEeecchhhccccCCCCC-CCCCccccHHHHhhccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHc
Q 000172 1765 NILIDQATAEVVHIDLGVAFEQGLMLKTP-ERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRTNKEALLTIVEVFI 1843 (1935)
Q Consensus 1765 NILid~~TG~vvHIDfg~~F~~g~~l~~p-E~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl 1843 (1935)
||||+ .||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+..|+.++++||++++.|+++|++|+
T Consensus 112 NIli~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 112 NIMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred cEEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 99999 79999999999999999876566 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccC
Q 000172 1844 HDPLYKWALS 1853 (1935)
Q Consensus 1844 ~DPL~~W~~~ 1853 (1935)
+||+.+|...
T Consensus 191 ~d~l~~~~~~ 200 (202)
T smart00146 191 YDGLPDWRSG 200 (202)
T ss_pred CCCChhhcCC
Confidence 9999999753
No 21
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=9.6e-47 Score=450.37 Aligned_cols=248 Identities=25% Similarity=0.387 Sum_probs=213.1
Q ss_pred cccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEecCC-----cEEEeeeecCCCcchhhHHHHHHHHHH
Q 000172 1555 VTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG-----HKYRQLAKSGNDDLRQDAVMEQFFGLV 1628 (1935)
Q Consensus 1555 ~t~~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gsdG-----k~y~~L~K~G~dDlRqD~r~~Qlf~lv 1628 (1935)
....+|++|... +.++ .++++|++|+++|.++++.+.|| ..|.+|+|.| ||||||++++|++++|
T Consensus 53 ~~~~lPl~P~~~--------~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lm 123 (365)
T cd00894 53 ESFRVPYDPGLR--------AGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIM 123 (365)
T ss_pred CCCCCCCCCceE--------EEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCC-CcccHHHHHHHHHHHH
Confidence 345677777532 2233 57889999999999999999886 5799999965 9999999999999999
Q ss_pred HHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHH
Q 000172 1629 NTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRI 1708 (1935)
Q Consensus 1629 N~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 1708 (1935)
|.+|+++. ++|++++|+|+|+++++|+||||+|+.|+++|..... +....
T Consensus 124 d~i~~~~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~---~~~~~----------------------- 173 (365)
T cd00894 124 ESIWETES----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGA----------------------- 173 (365)
T ss_pred HHHHHHcC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcc---ccccc-----------------------
Confidence 99998764 8999999999999999999999999999999875311 11000
Q ss_pred HHHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcccc
Q 000172 1709 AFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL 1788 (1935)
Q Consensus 1709 ~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~ 1788 (1935)
|. .+.+.+||.+.+++++.|..+|.+|++|+|+||++|||||+||||++|||||. +|+++|||||++|++++
T Consensus 174 -~k------~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~-~G~lfHIDFG~ilg~~~ 245 (365)
T cd00894 174 -FK------DEVLSHWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITE-TGNLFHIDFGHILGNYK 245 (365)
T ss_pred -cc------chhHHHHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEcC-CCCEEEEeeHHhhCCCC
Confidence 00 12578899999999999999999999999999999999999999999999995 99999999999999887
Q ss_pred CC-C-CCCCCCccccHHHHhhccccccc-----hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000172 1789 ML-K-TPERVPFRLTRDIIDGMGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1849 (1935)
Q Consensus 1789 ~l-~-~pE~VPFRLTrniv~~mG~~Gve-----G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~ 1849 (1935)
.+ . .||+||||||++|+++||+.|.+ +.|+..|+.++.+||++.+.|++++++++...+.+
T Consensus 246 ~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~ 313 (365)
T cd00894 246 SFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQ 313 (365)
T ss_pred ccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcc
Confidence 53 3 59999999999999999988765 47999999999999999999999999998655544
No 22
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=3.7e-47 Score=445.33 Aligned_cols=222 Identities=23% Similarity=0.371 Sum_probs=194.4
Q ss_pred EEecCCC-cceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCce
Q 000172 1583 MVMNGIN-APKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1659 (1935)
Q Consensus 1583 ~v~~s~~-~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GL 1659 (1935)
+++++.. .|-.+.+.-.| +..|.+|+|. +||||||++++|+|++||.+|+++. ++|.++||+|+|+|+++|+
T Consensus 9 k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~-gDDLRqD~l~~Ql~~l~~~i~~~~~----l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 9 KILQSALKIPYLELKKLTDSTLINSEFIVKC-GDDLRQDILATQIITELQKIFELMF----LDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred hHHHHhhcCchhhccCccCCCCeeEEEEEEC-CCcccHHHHHHHHHHHHHHHHHHcC----CCceeEEEEEEECCCCcee
Confidence 3444443 46555544444 4699999995 5999999999999999999999764 8999999999999999999
Q ss_pred eeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhcc--CChHHHH
Q 000172 1660 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFE 1737 (1935)
Q Consensus 1660 IE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~--~p~~w~~ 1737 (1935)
||||+|++|+++|.... .+.+.+||.+.|. +++.|++
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999986421 0125567778887 4678999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC-CCCCCCCccccHHHHhhccccccc--
Q 000172 1738 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLTRDIIDGMGVTGVE-- 1814 (1935)
Q Consensus 1738 ~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l-~~pE~VPFRLTrniv~~mG~~Gve-- 1814 (1935)
+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|++++.. ..||+||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999997 9999999999999998754 568999999999999999999987
Q ss_pred hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1815 GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1815 G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
|.|+.+|+.++.+||+|.+.|++++++|+++|+..|.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC
Confidence 7899999999999999999999999999999999885
No 23
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.5e-46 Score=448.22 Aligned_cols=249 Identities=21% Similarity=0.319 Sum_probs=207.3
Q ss_pred cccCCCCCCcccCCCccccccccceEEEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHc
Q 000172 1557 ATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 1634 (1935)
Q Consensus 1557 ~~lpi~~~~~y~~g~~~~I~~f~~~~~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~ 1634 (1935)
..+|++|+... ..-+.++++|++|+++|++|++.+.| |+.|.+|+|. +||||||++++|++++||.+|++
T Consensus 53 ~~lPl~p~~~~-------~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~-gDDLRQD~l~~Qli~lmd~i~k~ 124 (361)
T cd05174 53 LQSPLSPSIIL-------CEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKN-GDDLRQDMLTLQMIQLMDVLWKQ 124 (361)
T ss_pred CCCCCCCceEE-------EEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHH
Confidence 44677775332 22345889999999999999999976 9999999995 59999999999999999999998
Q ss_pred CcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHH
Q 000172 1635 HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVC 1714 (1935)
Q Consensus 1635 ~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~ 1714 (1935)
+. ++|++++|+|+|+++++|+||||+|+.|+++|....... +.. ..|++
T Consensus 125 ~~----ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~~------------------------~~f~~-- 173 (361)
T cd05174 125 EG----LDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AAT------------------------AAFNK-- 173 (361)
T ss_pred CC----CCeeeEEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-chh------------------------ccccc--
Confidence 75 899999999999999999999999999999987531100 000 01111
Q ss_pred hhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcccc--CCCC
Q 000172 1715 ENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKT 1792 (1935)
Q Consensus 1715 ~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~--~l~~ 1792 (1935)
+.+.+||.+.+|+ +.|..++.+|++|+|+||++||||||||||++||||++ +|+++|||||++|++.+ ....
T Consensus 174 ----~~l~~~l~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~~ 247 (361)
T cd05174 174 ----DALLNWLKSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGIN 247 (361)
T ss_pred ----hHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcC-CCCEEEEehHHhhcCCcccCCCC
Confidence 3567888887765 35567799999999999999999999999999999995 99999999999999754 3457
Q ss_pred CCCCCccccHHHHhhcccccc-----chhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000172 1793 PERVPFRLTRDIIDGMGVTGV-----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1850 (1935)
Q Consensus 1793 pE~VPFRLTrniv~~mG~~Gv-----eG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W 1850 (1935)
||+||||||++|+++||..|. .|.|+.+|+.++.+||+|.+.|++++++|+...+.+.
T Consensus 248 ~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~ 310 (361)
T cd05174 248 RERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPEL 310 (361)
T ss_pred CCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999974322 2699999999999999999999999999986655543
No 24
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=1.7e-47 Score=443.91 Aligned_cols=229 Identities=42% Similarity=0.769 Sum_probs=178.4
Q ss_pred EEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCC
Q 000172 1603 KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGA 1682 (1935)
Q Consensus 1603 ~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~ 1682 (1935)
.|+||+|+ +||+|||+|+||+|+++|.+|.+++++++ +++|.|+|+++++||||||+++.|+.+++.......+.
T Consensus 1 ~y~~l~K~-~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~ 75 (235)
T PF00454_consen 1 EYSFLVKG-GDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGH 75 (235)
T ss_dssp -EEEEEEE-SS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTT
T ss_pred CceEEEEC-CchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhccccccccc
Confidence 59999995 69999999999999999999999987755 99999999999999999999999999999875543332
Q ss_pred CCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhh-hhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 000172 1683 HGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCEN-FRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDR 1761 (1935)
Q Consensus 1683 ~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~-~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDR 1761 (1935)
...+ +... .+...+...+.. ..+.+.+||.+.++++++|+.+|++|++|+|++|++|||+|+|||
T Consensus 76 ~~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDR 141 (235)
T PF00454_consen 76 SNDN-PSRK-------------YKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDR 141 (235)
T ss_dssp TCSC--------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS-
T ss_pred cccc-cccc-------------cccccccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCC
Confidence 2111 1000 000002222223 334899999999999999999999999999999999999999999
Q ss_pred CCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhc----cccccchhhHHHHHHHHHHHhcChHHHHH
Q 000172 1762 HAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGM----GVTGVEGVFRRCCEKTLSVMRTNKEALLT 1837 (1935)
Q Consensus 1762 H~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~m----G~~GveG~Fr~~~~~t~~~LR~~~~~l~~ 1837 (1935)
||+||||+..||+++|||||++|+ ++.+++||.||||||+||+++| |+.|.+|.|+.+|+.++++||++++.|++
T Consensus 142 h~~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ 220 (235)
T PF00454_consen 142 HPGNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLS 220 (235)
T ss_dssp -TTTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CchhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHH
Confidence 999999999999999999999999 8888999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHccCCCcccc
Q 000172 1838 IVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1838 iL~~fl~DPL~~W~ 1851 (1935)
+|++|++||+++|+
T Consensus 221 ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 221 LLELFLRDPLIDWR 234 (235)
T ss_dssp HHHHTTTSCSTTSS
T ss_pred HHHHHHhCCCCCCC
Confidence 99999999999996
No 25
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=6.5e-46 Score=440.73 Aligned_cols=248 Identities=19% Similarity=0.314 Sum_probs=209.0
Q ss_pred ccccCCCCCCcccCCCccccccccceEEEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHHH
Q 000172 1556 TATVPIDCTCQYNEGSFPYFKGLAESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLR 1633 (1935)
Q Consensus 1556 t~~lpi~~~~~y~~g~~~~I~~f~~~~~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~ 1633 (1935)
+..+|++|..... |. ..+.++|++|+++|+++++.++| |+.|.+|+|.| ||||||++++|++++||++|+
T Consensus 48 ~~~lPl~p~~~~~-~~------~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~g-DDLRQD~l~lQli~lmd~i~~ 119 (353)
T cd05176 48 KCRLPLSPSLVAK-EL------NIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVG-EDLRQDMLALQMIKIMDKIWL 119 (353)
T ss_pred CCCCCCCcceeEc-cE------ehheeEEecccCCceEEEEEccCCCCCEEEEEEeCC-CCccHHHHHHHHHHHHHHHHH
Confidence 3557777743221 11 12568999999999999999999 99999999965 999999999999999999999
Q ss_pred cCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHH
Q 000172 1634 NHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEV 1713 (1935)
Q Consensus 1634 ~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i 1713 (1935)
+.. .+|++++|+|+|+++++|+||||||+.|+++|.... |....+ .
T Consensus 120 ~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~------------------------~-- 165 (353)
T cd05176 120 QEG----LDLRMVIFKCLSTGKDRGMVELVPASETLRKIQVEY----GVTGSF------------------------K-- 165 (353)
T ss_pred HCC----CCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHHh----CcCCcc------------------------c--
Confidence 865 789999999999999999999999999999987532 111100 0
Q ss_pred HhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC--C
Q 000172 1714 CENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--K 1791 (1935)
Q Consensus 1714 ~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l--~ 1791 (1935)
...+.+|+...+|+++.|..+|.||++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.++.+ .
T Consensus 166 ----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~ 240 (353)
T cd05176 166 ----DKPLAEWLRKYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSF 240 (353)
T ss_pred ----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCC
Confidence 0125677777788889999999999999999999999999999999999999 59999999999999988743 4
Q ss_pred CCCCCCccccHHHHhhcccccc----chhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000172 1792 TPERVPFRLTRDIIDGMGVTGV----EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1850 (1935)
Q Consensus 1792 ~pE~VPFRLTrniv~~mG~~Gv----eG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W 1850 (1935)
.||++|||||++|+++||..+. -..|+..|..++.+||+|.+.|++++++++.-.+.+.
T Consensus 241 ~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~ 303 (353)
T cd05176 241 KRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPEL 303 (353)
T ss_pred CCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCccc
Confidence 6899999999999999984322 1359999999999999999999999999987666654
No 26
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=3.8e-46 Score=446.40 Aligned_cols=248 Identities=25% Similarity=0.382 Sum_probs=206.5
Q ss_pred ccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEec--CCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHc
Q 000172 1558 TVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGS--DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRN 1634 (1935)
Q Consensus 1558 ~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gs--dGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~ 1634 (1935)
.+|++|.. .+.++ .++++|++|+++|++|++.+. +|..|.+|+|. +||||||++++|++++||++|++
T Consensus 54 ~lPldP~~--------~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~-gDDLRQD~l~lQli~lm~~i~k~ 124 (362)
T cd05173 54 QSPLNPSI--------ILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKN-GDDLRQDMLTLQILRLMDTLWKE 124 (362)
T ss_pred CCCCCCce--------EEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeC-CCchhHHHHHHHHHHHHHHHHHH
Confidence 46777643 33444 356899999999999999764 79999999995 59999999999999999999998
Q ss_pred CcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHH
Q 000172 1635 HRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVC 1714 (1935)
Q Consensus 1635 ~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~ 1714 (1935)
+. ++|++++|+|+|+|+++|+||||+|+.|+++|....... +. ..+|.+
T Consensus 125 ~~----ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~~-~~------------------------~~~f~~-- 173 (362)
T cd05173 125 AG----LDLRIVPYGCLATGDRSGLIEVVSSAETIADIQLNSSNV-AA------------------------AAAFNK-- 173 (362)
T ss_pred CC----CCeeeEEEEEEEccCCceEEEEeCCchhHHHHHHhcccc-ch------------------------hcccCh--
Confidence 64 899999999999999999999999999999987432100 00 001111
Q ss_pred hhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcccc--CCCC
Q 000172 1715 ENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKT 1792 (1935)
Q Consensus 1715 ~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~--~l~~ 1792 (1935)
+.+.+||.+.+ .++.|..++.+|++|+|+||++||||||||||++|||||. +|+++|||||++|++.+ ....
T Consensus 174 ----~~l~~~l~~~~-~~~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~-~G~l~HIDFG~ilg~~~~~~~~~ 247 (362)
T cd05173 174 ----DALLNWLKEYN-SGDDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRK-NGQLFHIDFGHILGNFKSKFGIK 247 (362)
T ss_pred ----hHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhccCCcccCCC
Confidence 24677776643 3456777899999999999999999999999999999995 99999999999999743 3457
Q ss_pred CCCCCccccHHHHhhcc--ccc---cchhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1793 PERVPFRLTRDIIDGMG--VTG---VEGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1793 pE~VPFRLTrniv~~mG--~~G---veG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
||+||||||++|+++|| ..| .+|.|+.+|+.++.+||+|.+.|++++++|+..++.++.
T Consensus 248 ~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~ 311 (362)
T cd05173 248 RERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELT 311 (362)
T ss_pred CCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccc
Confidence 99999999999999995 333 468999999999999999999999999999999888764
No 27
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=1.9e-45 Score=433.63 Aligned_cols=270 Identities=22% Similarity=0.313 Sum_probs=221.8
Q ss_pred cceEEEecCC-CcceEEEEEecCCc-------------EEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCee
Q 000172 1579 AESVMVMNGI-NAPKVVECFGSDGH-------------KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLG 1644 (1935)
Q Consensus 1579 ~~~~~v~~s~-~~Pk~i~~~gsdGk-------------~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~ 1644 (1935)
.++++|+.|+ .+|.++++...|+. .+..|+|. +||||||++++|+|++||++|++.. ++|+
T Consensus 15 ~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~-gDDLRQD~l~~Qli~lm~~i~~~~~----ldl~ 89 (311)
T cd05167 15 YKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKV-GDDCRQDMLALQLISLFKNIFQSAG----LDLY 89 (311)
T ss_pred ccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeC-CCCccHHHHHHHHHHHHHHHHHHCC----CCeE
Confidence 3667899998 57999999988764 48999996 5999999999999999999999764 8999
Q ss_pred eecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHH
Q 000172 1645 VRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYF 1724 (1935)
Q Consensus 1645 i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~ 1724 (1935)
+++|+|+|+++++|+||||+|+.|+++|... ..+.+.+|
T Consensus 90 l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~-----------------------------------------~~~~l~~~ 128 (311)
T cd05167 90 LFPYRVVATGPGCGVIEVVPNSKSRDQIGRT-----------------------------------------TDNGLYEY 128 (311)
T ss_pred eEEEeEEecCCCceEEEEeCCcHHHHHHHhh-----------------------------------------cccHHHHH
Confidence 9999999999999999999999999986321 01246778
Q ss_pred HHHhccC--ChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC-CCCCCCCcccc
Q 000172 1725 FLERFLQ--PAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-KTPERVPFRLT 1801 (1935)
Q Consensus 1725 f~~~f~~--p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l-~~pE~VPFRLT 1801 (1935)
|.+.|.+ +..|..+|.+|++|+|+|||+|||||+||||++|||||. +|+++|||||++|+.++.- ..+|+||||||
T Consensus 129 f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT 207 (311)
T cd05167 129 FTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLKFESAPFKLT 207 (311)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCCcCCCCEeec
Confidence 8888865 479999999999999999999999999999999999997 9999999999999987642 45799999999
Q ss_pred HHHHhhccccccch---hhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhhhhccccccccCCCCCccc
Q 000172 1802 RDIIDGMGVTGVEG---VFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKEMDDDLETGLEGPEDE 1878 (1935)
Q Consensus 1802 rniv~~mG~~GveG---~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 1878 (1935)
++|+++||+.|.+| .|+..|..++.+||++.+.|++++++|+...+..+.
T Consensus 208 ~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~--------------------------- 260 (311)
T cd05167 208 KEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR--------------------------- 260 (311)
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------------------
Confidence 99999999988665 677789999999999999999999999876665542
Q ss_pred cccchhHHHHHHHHHhhhcCCCCCCccCHHHHHHHHHHHhcCchhhhhhCcccc
Q 000172 1879 YEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWG 1932 (1935)
Q Consensus 1879 ~~~n~~a~~~l~rv~~KL~g~~~~~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~ 1932 (1935)
..++..+++|+.-. .........+..||+.|.+. --.++|-.|+
T Consensus 261 -------~~~i~~l~~rf~l~--~se~~a~~~~~~lI~~s~~~-~~t~~yD~~q 304 (311)
T cd05167 261 -------GDTIKNLRQRFAPE--KSEREAAEFMLSLIAESYEK-FRTKGYDQFQ 304 (311)
T ss_pred -------HHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHHhc-hhHHHHHHHH
Confidence 12355666666321 11123566788899988775 2224444443
No 28
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=3.8e-43 Score=417.25 Aligned_cols=246 Identities=20% Similarity=0.340 Sum_probs=209.8
Q ss_pred ccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHH
Q 000172 1556 TATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFL 1632 (1935)
Q Consensus 1556 t~~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL 1632 (1935)
+..+|++|... +.++ .++++|++|+.+|.++++.+.| |..|.+++|.| ||||||+.++|++++||++|
T Consensus 49 ~~~lPldP~~~--------v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd~i~ 119 (354)
T cd00895 49 SCRLPLSPSLL--------VKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCG-DDLRQDMLTLQMIRIMNKIW 119 (354)
T ss_pred CCcCCCCCCeE--------EEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCC-CCccHHHHHHHHHHHHHHHH
Confidence 34577777533 2232 3678999999999999999999 99999999976 99999999999999999999
Q ss_pred HcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHH
Q 000172 1633 RNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQE 1712 (1935)
Q Consensus 1633 ~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~ 1712 (1935)
+++. .+|++++|+|+|+++++|+||||||+.|+++|.... |..+.+.
T Consensus 120 ~~~~----ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~~~------------------------- 166 (354)
T cd00895 120 VQEG----LDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGSFK------------------------- 166 (354)
T ss_pred HHcC----CCceEEEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcccc-------------------------
Confidence 9875 889999999999999999999999999999987531 1111110
Q ss_pred HHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC--
Q 000172 1713 VCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML-- 1790 (1935)
Q Consensus 1713 i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l-- 1790 (1935)
...+.+||.+.+|++..|..+|.||++|+|+||++|||||+||||++||||++ +|+++|||||++|+.++.+
T Consensus 167 -----~~~l~~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~-~GhlfHIDFG~iLg~~~~~g~ 240 (354)
T cd00895 167 -----DRPLADWLQKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKT-TGHMFHIDFGRFLGHAQMFGN 240 (354)
T ss_pred -----cchHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEcC-CCCEEEEeeHHhcCCCcccCC
Confidence 01367788888999999999999999999999999999999999999999995 9999999999999987542
Q ss_pred CCCCCCCccccHHHHhhccccccc----hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcc
Q 000172 1791 KTPERVPFRLTRDIIDGMGVTGVE----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYK 1849 (1935)
Q Consensus 1791 ~~pE~VPFRLTrniv~~mG~~Gve----G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~ 1849 (1935)
..+|++||+||++|+++||..|.+ ..|+..|..++.+||+|.+.|++++++|+.-.+.+
T Consensus 241 ~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~ 303 (354)
T cd00895 241 IKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPE 303 (354)
T ss_pred CCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcc
Confidence 368999999999999999753432 36999999999999999999999999998654443
No 29
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=3e-42 Score=409.77 Aligned_cols=247 Identities=22% Similarity=0.374 Sum_probs=204.8
Q ss_pred cccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEecCC------cEEEeeeecCCCcchhhHHHHHHHHHHH
Q 000172 1557 ATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDG------HKYRQLAKSGNDDLRQDAVMEQFFGLVN 1629 (1935)
Q Consensus 1557 ~~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gsdG------k~y~~L~K~G~dDlRqD~r~~Qlf~lvN 1629 (1935)
..+|++|.. .+.++ .++++|++|+.+|.++++.++|| ..|..++|.| ||||||++++|++++||
T Consensus 53 ~~lPl~P~~--------~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~G-DDLRQD~l~lQli~lmd 123 (366)
T cd05175 53 FTSPLNPAH--------QLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNG-DDLRQDMLTLQIIRIME 123 (366)
T ss_pred CCCCCCCce--------EEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCC-CCccHHHHHHHHHHHHH
Confidence 456777643 23333 35778999999999999999998 4689999965 99999999999999999
Q ss_pred HHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHH
Q 000172 1630 TFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIA 1709 (1935)
Q Consensus 1630 ~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 1709 (1935)
++|++.. .+|++++|+|+|+++++|+||||+|+.|+++|.... +....+ .
T Consensus 124 ~i~~~~~----ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~~~~----------------------~ 173 (366)
T cd05175 124 NIWQNQG----LDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLKGAL----------------------Q 173 (366)
T ss_pred HHHHHCC----CCeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----cccccc----------------------c
Confidence 9999875 899999999999999999999999999999986421 111000 0
Q ss_pred HHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC
Q 000172 1710 FQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM 1789 (1935)
Q Consensus 1710 f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~ 1789 (1935)
|+ .+.+++|+.+.++ .+.|..+|.||++|+|+||++|||||+||||++|||||. +|+++|||||++|+.++.
T Consensus 174 ~~------~~~l~~~l~~~~~-~~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~-~G~l~HIDFG~iLg~~p~ 245 (366)
T cd05175 174 FN------SHTLHQWLKDKNK-GEMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKK 245 (366)
T ss_pred cC------chhHHHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcC-CCCEEEEehHHhhcCCCc
Confidence 10 1346677776654 467889999999999999999999999999999999995 999999999999998764
Q ss_pred -C-CCCCCCCccccHHHHhhcccc-----ccc--hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccc
Q 000172 1790 -L-KTPERVPFRLTRDIIDGMGVT-----GVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKW 1850 (1935)
Q Consensus 1790 -l-~~pE~VPFRLTrniv~~mG~~-----Gve--G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W 1850 (1935)
+ ..||+||||||++|+..||.. +.+ +.|+..|..++.+||+|.+.|+++++.++.-.+.+.
T Consensus 246 ~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l 315 (366)
T cd05175 246 KFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPEL 315 (366)
T ss_pred cCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3 469999999999999999743 233 589999999999999999999999999975555443
No 30
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-34 Score=362.13 Aligned_cols=416 Identities=19% Similarity=0.253 Sum_probs=307.5
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCCc
Q 000172 1368 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 1435 (1935)
Q Consensus 1368 ~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~~ 1435 (1935)
.|+.--|.|.-..+....-++.-+|.=|--.. .+.+|.+...+.+++++....+..+|||+..|.++.
T Consensus 858 ~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~ 937 (1639)
T KOG0905|consen 858 NALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFEL 937 (1639)
T ss_pred chhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 36666666665555545556777777775443 467899999999999999999999999999999864
Q ss_pred cccccccHHHHHHHHHHHHHHhCCc--hhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHHhh----HHHH
Q 000172 1436 DALGLHNFQFALVSLVKKMAIDHPY--HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSY----HGAI 1509 (1935)
Q Consensus 1436 ~~~~~~~f~~~L~~Ll~ri~~~hP~--~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~~~----~~~~ 1509 (1935)
...+.|.++|...+...++ |-+|+++.-.-.+ .....|. +.++..+... ..+-
T Consensus 938 ------yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d---~qfs~rY------------q~ll~aLl~~~gk~L~~e 996 (1639)
T KOG0905|consen 938 ------YLKSALVQFLLSRSLVSLQFAHELYWLLKDALDD---SQFSLRY------------QNLLAALLDCCGKNLREE 996 (1639)
T ss_pred ------hccCHHHHHHHHHHhcchHHHHHHHHHHhhcccc---ceeehHH------------HHHHHHHHHHhCHHHHHH
Confidence 2346788999999888777 4455554321111 1111222 1222222111 1111
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhhhhhccccccccccccccCCCCCCcccCCCccccccccceEEEecCCC
Q 000172 1510 IRQMKQMVDVYIKLAELETRREDTNKRIQLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMVMNGIN 1589 (1935)
Q Consensus 1510 ~~~~~~l~~~~~~La~~~~~~e~~~~~~~~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~~~~~v~~s~~ 1589 (1935)
+.--.+|++.+-.+|+--.......+...+.+.+..+... ..-..|.++|+.|.... .|.. ...+++++|+.
T Consensus 997 f~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f-f~~n~tcrLPL~Pal~v-kGv~------i~~CSyFnSNA 1068 (1639)
T KOG0905|consen 997 FKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF-FLQNNTCRLPLCPALDV-KGVR------IRECSYFNSNA 1068 (1639)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH-HHhCCceecccCchhee-cccc------ccccccccCCC
Confidence 1223457777777776321111111111233333333221 12335777888875432 2221 14678899999
Q ss_pred cceEEEEEe--cCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCC
Q 000172 1590 APKVVECFG--SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTV 1667 (1935)
Q Consensus 1590 ~Pk~i~~~g--sdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~ 1667 (1935)
.|-+|+|+| -+|..+..++|.| ||||||+.++|++++||.+|.++. .+|++.+|+++|.+-+.|++|-|+|..
T Consensus 1069 ~PLKitFvnadp~geni~iIfK~g-DDLRQDml~lQmI~iMdkIWl~eg----LDlrMViFrc~stG~~rgMvElVp~a~ 1143 (1639)
T KOG0905|consen 1069 LPLKITFVNADPLGENISIIFKCG-DDLRQDMLVLQMIRIMDKIWLQEG----LDLRMVIFRCLSTGYDRGMVELVPNAE 1143 (1639)
T ss_pred cceEEEEecCCCccccceeeeecC-chHHHHHHHHHHHHHHHHHHHhcC----CceeEEEEEeecccccccceeecccHH
Confidence 999999999 7799999999986 999999999999999999999986 899999999999999999999999999
Q ss_pred chHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHH
Q 000172 1668 PLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVA 1747 (1935)
Q Consensus 1668 tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A 1747 (1935)
||.+|-..+ |..+.+. + -.+.+|+++..|++.+|-.+-.||+.|+|
T Consensus 1144 TLrKIQve~----GltGsfk-----------------D-------------~pla~WL~KhNp~e~eYekA~eNFiySCA 1189 (1639)
T KOG0905|consen 1144 TLRKIQVEE----GLTGSFK-----------------D-------------RPLAKWLMKHNPSEFEYEKAVENFIYSCA 1189 (1639)
T ss_pred HHHHHHHHh----ccccccc-----------------c-------------chHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence 999987542 2222111 0 13678999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC--CCCCCCCccccHHHHhhcccccc----chhhHHHH
Q 000172 1748 ASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML--KTPERVPFRLTRDIIDGMGVTGV----EGVFRRCC 1821 (1935)
Q Consensus 1748 ~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l--~~pE~VPFRLTrniv~~mG~~Gv----eG~Fr~~~ 1821 (1935)
.+|+++||||++|||.+|||+.+ ||++||||||-.+|.+.++ -...++||-+|.+|..++...+- ...|...|
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~-sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlC 1268 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTK-SGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLC 1268 (1639)
T ss_pred cceeeeEeeecccccCCceEEec-cCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHH
Confidence 99999999999999999999996 9999999999998877543 35799999999999999975443 36799999
Q ss_pred HHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1822 EKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1822 ~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
..++..+|+|.+.++++|..|+.-.+..-..
T Consensus 1269 CrAyNiiRK~t~lllnlL~lM~~agiPeln~ 1299 (1639)
T KOG0905|consen 1269 CRAYNIIRKNTNLLLNLLRLMACAGIPELNS 1299 (1639)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCccc
Confidence 9999999999999999999999988876543
No 31
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.9e-34 Score=341.06 Aligned_cols=418 Identities=22% Similarity=0.361 Sum_probs=285.9
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
.+|+.-|++|..+.+......+++++-=|=+.. .++.|.......+........+-.++||+..++..
T Consensus 308 kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqal~ye 387 (843)
T KOG0906|consen 308 KKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQALKYE 387 (843)
T ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 479999999999998765555788888886653 24568888888888888888899999999999876
Q ss_pred cccc------------cc---------------------------ccHHHHHHHHHHHHHHhCCch---hHHHHHHhccc
Q 000172 1435 KDAL------------GL---------------------------HNFQFALVSLVKKMAIDHPYH---TIFQLLALANG 1472 (1935)
Q Consensus 1435 ~~~~------------~~---------------------------~~f~~~L~~Ll~ri~~~hP~~---~ly~L~a~~~s 1472 (1935)
+..+ +. +..-+.|..+|.+.+...|+- .+|.+......
T Consensus 388 ~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e~Ed 467 (843)
T KOG0906|consen 388 NGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVEIED 467 (843)
T ss_pred hhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEEecC
Confidence 5100 00 000124677777777777763 22322211111
Q ss_pred cchhhhhccccchhhhhhHHH-HHHHHHHHHHh--hH---HHHHHHHHHHHHHHHHHHhhhhcc-cccccccc-chhhhh
Q 000172 1473 DRIKDKQRSRNSFVVDMDKKL-AAENLLEELSS--YH---GAIIRQMKQMVDVYIKLAELETRR-EDTNKRIQ-LPREIR 1544 (1935)
Q Consensus 1473 ~~~~~~~r~~~~~~v~~~r~~-aa~~il~~l~~--~~---~~~~~~~~~l~~~~~~La~~~~~~-e~~~~~~~-~~~~l~ 1544 (1935)
... +.+.. .....++.+.+ .. ...+.+-..+.+.+.++.+--... ..+.+|+. +...|.
T Consensus 468 ~~~-------------~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~ 534 (843)
T KOG0906|consen 468 TPY-------------SKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLG 534 (843)
T ss_pred ChH-------------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHh
Confidence 000 00110 01112222222 11 122233345666666666532211 11122221 111111
Q ss_pred hccccccccccccccCCCCCCcccCCCccccccc-cceEEEecCCCcceEEEEEecCCc-EEEeeeecCCCcchhhHHHH
Q 000172 1545 CLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGL-AESVMVMNGINAPKVVECFGSDGH-KYRQLAKSGNDDLRQDAVME 1622 (1935)
Q Consensus 1545 ~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f-~~~~~v~~s~~~Pk~i~~~gsdGk-~y~~L~K~G~dDlRqD~r~~ 1622 (1935)
......+..+-...+|++|+. .|.++ -++.+++.|--.|-+++++..+|. .|+.++|.| ||||||+.+.
T Consensus 535 ~~~~~~l~~~~~i~lpldp~v--------~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~G-DDLrQDqlV~ 605 (843)
T KOG0906|consen 535 DHKHMNLLDVRLIALPLDPDV--------LIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKG-DDLRQDQLVL 605 (843)
T ss_pred cccccccccceeeccCCCCCc--------eEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecC-cchhHHHHHH
Confidence 111111111222345666643 33333 356678899999999999999999 999999987 9999999999
Q ss_pred HHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcc
Q 000172 1623 QFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSN 1702 (1935)
Q Consensus 1623 Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1702 (1935)
|+.++|+.+|++.. .+|.+.+|+|+|+++.-|++|+|+ ++|+..|+..+..
T Consensus 606 Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~-s~~la~Ils~~~~------------------------ 656 (843)
T KOG0906|consen 606 QIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIP-SKPLARILSEYHS------------------------ 656 (843)
T ss_pred HHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeec-CCcHHHHHHHHHH------------------------
Confidence 99999999999986 899999999999999999999999 5788887743110
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHhccCC----hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEe
Q 000172 1703 VKDKRIAFQEVCENFRPVLHYFFLERFLQP----AYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHI 1778 (1935)
Q Consensus 1703 ~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p----~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHI 1778 (1935)
...|+.+..|+- ..=.+.+.+|.+|+|.+|+++||||+||||++|+|+.+ +|++|||
T Consensus 657 ------------------I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT~-dGk~FHi 717 (843)
T KOG0906|consen 657 ------------------ILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLTK-DGKLFHI 717 (843)
T ss_pred ------------------HHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEcc-CCcEEEE
Confidence 111222223321 12246788999999999999999999999999999997 9999999
Q ss_pred ecchhhccccCCCCCCCCCccccHHHHhhccccccc--hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhH
Q 000172 1779 DLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVE--GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLK 1856 (1935)
Q Consensus 1779 Dfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~Gve--G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k 1856 (1935)
|||++||.+ |+|-..|..|++.|+++||....+ ..|+..|..++..||++...|+++.++++-.-+.+....|.+
T Consensus 718 DFgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~dp~k 794 (843)
T KOG0906|consen 718 DFGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAFDPNK 794 (843)
T ss_pred eeeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceeeCcch
Confidence 999999988 667778999999999999966553 579999999999999999999999999987666655544443
Q ss_pred H
Q 000172 1857 A 1857 (1935)
Q Consensus 1857 ~ 1857 (1935)
+
T Consensus 795 ~ 795 (843)
T KOG0906|consen 795 A 795 (843)
T ss_pred h
Confidence 3
No 32
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-33 Score=341.75 Aligned_cols=413 Identities=22% Similarity=0.315 Sum_probs=289.5
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCCc
Q 000172 1368 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 1435 (1935)
Q Consensus 1368 ~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~~ 1435 (1935)
.++.--+.|+.+++.-+...+.-++.-|=..+ .++.|.+...+.+..+....++..+-||++.|.++
T Consensus 579 e~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyE- 657 (1076)
T KOG0904|consen 579 EALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYE- 657 (1076)
T ss_pred HHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-
Confidence 35555566777666544444556666564432 46778888889999999999999999999999985
Q ss_pred cccccccHHHHHHHHHHHHHHhCC---chhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHH----hhHHH
Q 000172 1436 DALGLHNFQFALVSLVKKMAIDHP---YHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHGA 1508 (1935)
Q Consensus 1436 ~~~~~~~f~~~L~~Ll~ri~~~hP---~~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~----~~~~~ 1508 (1935)
+..+..|..+|.+.|...- |..+|+|.+....... +.|. -.|++.-. .+...
T Consensus 658 -----pylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~-------------~~Rf---gllLEaYlRGc~~hlk~ 716 (1076)
T KOG0904|consen 658 -----PYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSV-------------QQRF---GLLLEAYLRGCTHHLKV 716 (1076)
T ss_pred -----chhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHH-------------HHHH---HHHHHHHHhccHHHHHH
Confidence 4567788888888776543 4578999876532210 1111 11222211 12222
Q ss_pred HHHHHHHHHHHHHHHHhh---hhcccccccccc-chhhhhhccccccccccccccCCCCCCcccCCCccccccccceEEE
Q 000172 1509 IIRQMKQMVDVYIKLAEL---ETRREDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAESVMV 1584 (1935)
Q Consensus 1509 ~~~~~~~l~~~~~~La~~---~~~~e~~~~~~~-~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~~~~~v 1584 (1935)
+.++++ +.+.+.++... ...+++..+.+. +...+++....+ -.....-|++|.... |. =+.++++|
T Consensus 717 l~kQve-~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~--~lq~l~sPLdP~~~l--ge-----l~iekckv 786 (1076)
T KOG0904|consen 717 LTKQVE-ALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSE--ALQNLQSPLDPSLKL--GE-----LIIEKCKV 786 (1076)
T ss_pred HHHHHH-HHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHH--HHHhccCCCChhhhh--cc-----hhhhhhhh
Confidence 323332 22222222221 111111110000 111111111110 011223455553222 21 12367899
Q ss_pred ecCCCcceEEEEE----ecCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCcee
Q 000172 1585 MNGINAPKVVECF----GSDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1660 (1935)
Q Consensus 1585 ~~s~~~Pk~i~~~----gsdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLI 1660 (1935)
|+|+.||-.+.+- |+++ .-..++|+| ||||||..+.|+.++|+.+|+.+. .+|.+.+|.++|++...|||
T Consensus 787 M~SkkrPLwl~~~Np~~~s~~-~v~iIFKNG-DDLRQDMLtLQmLriMd~iWk~~g----lDlrm~PYgcls~Gd~iGlI 860 (1076)
T KOG0904|consen 787 MDSKKRPLWLVFENPDAGSNL-SVGIIFKNG-DDLRQDMLTLQMLRIMDNIWKTEG----LDLRMLPYGCLSTGDRIGLI 860 (1076)
T ss_pred hhccCCceEEEecCCCcccCC-ceeEEEcCC-chHHHHHHHHHHHHHHHHHHHhcC----CCeeccccccccccceeeeE
Confidence 9999999999874 4445 567899987 999999999999999999999876 89999999999999999999
Q ss_pred eecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhh-hHHHHHHHhccCChHHHHHH
Q 000172 1661 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRP-VLHYFFLERFLQPAYWFEKR 1739 (1935)
Q Consensus 1661 E~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~p-vl~~~f~~~f~~p~~w~~~R 1739 (1935)
|.|+|+.|+.+|-.+. ++..+ ..-|.+ .+.+|+.+..|....+=.+-
T Consensus 861 EVV~~s~TIa~IQ~~~---g~~~a-----------------------------t~afn~~~L~~WLKekNp~e~kld~AI 908 (1076)
T KOG0904|consen 861 EVVRNSETIANIQLNT---GNMAA-----------------------------TAAFNKDALLNWLKEKNPGEDKLDAAI 908 (1076)
T ss_pred EEecCchhhhhhhhcc---cccee-----------------------------eccCCHHHHHHHHhhcCchHHHHHHHH
Confidence 9999999999986431 11000 011222 68888888777766688899
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC-C-CCCCCCCccccHHHHhhccccccc---
Q 000172 1740 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-L-KTPERVPFRLTRDIIDGMGVTGVE--- 1814 (1935)
Q Consensus 1740 ~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~-l-~~pE~VPFRLTrniv~~mG~~Gve--- 1814 (1935)
..||.|+|.||+++||||+||||.+|||+.+ ||++||||||.++|.++. | -..|+|||=||++++..|+-.+..
T Consensus 909 e~Ft~SCAGYcVATyVLGIgDRHsDNIMvke-~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~ 987 (1076)
T KOG0904|consen 909 EEFTLSCAGYCVATYVLGIGDRHSDNIMVKE-TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSE 987 (1076)
T ss_pred HHHHHhhccceeeeeeecccccccCceEEec-cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCch
Confidence 9999999999999999999999999999996 999999999999998874 4 457999999999999999865442
Q ss_pred ---hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccc
Q 000172 1815 ---GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWA 1851 (1935)
Q Consensus 1815 ---G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~ 1851 (1935)
+.|+.+|+.++-+||+|...++++...++--.|.+-+
T Consensus 988 ~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELs 1027 (1076)
T KOG0904|consen 988 KEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELS 1027 (1076)
T ss_pred hHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCccc
Confidence 6799999999999999999999999999988887654
No 33
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=1.2e-32 Score=336.91 Aligned_cols=316 Identities=28% Similarity=0.369 Sum_probs=249.9
Q ss_pred hHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 000172 986 TKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEY 1065 (1935)
Q Consensus 986 ~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~~i~~aR~~l~~eLsa~s~ES~~r 1065 (1935)
+|+++|||||+|+||.+..+. +..+ ....+..+|+++.+++++++++|...|+++|+.++.++++.+.+||.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~--~~~~-----~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~ 73 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYL--SQSN-----EDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQR 73 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHH--hhcc-----CCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 589999999999999876542 2111 122367788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHHHHHHHHhhhcchhhhhhHHHHHHH
Q 000172 1066 IYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRV 1145 (1935)
Q Consensus 1066 ~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~e~~epiL~~R~~ 1145 (1935)
+|+.++++|+|.|||+++++..+... .....+.+.+.|++|++.+++++++|+|+|++|+.
T Consensus 74 ~y~~l~~lq~L~Elee~~~~~~~~~~-------------------~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~ 134 (352)
T PF02259_consen 74 AYPSLVKLQQLVELEEIIELKSNLSQ-------------------NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL 134 (352)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcc-------------------cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999885322100 13457889999999999999999999999999999
Q ss_pred HHHhccchhHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCC-CchHHHHHHHHCCChHHHHHHHHHHHhh-
Q 000172 1146 LLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQS-PLPHLLNLLRAQGQHEMAINLAKYISEN- 1223 (1935)
Q Consensus 1146 vl~il~~~e~~~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~-~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~- 1223 (1935)
+++++...+....+|+++|++|||+|++++|.++|.++............ ..-++||++|++|++..|+..|+.++.+
T Consensus 135 ~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 135 VLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99977777778999999999999999999999999988765432110011 1234899999999999999999887762
Q ss_pred ccC------------------------------CCchhHHHHHHhHhHHHh----hcCChHHHHHhhhchhccccccccc
Q 000172 1224 YES------------------------------NEEAPDVYRLVGKWLAES----RSSNSRIILENYLKPAVSFSEDQRT 1269 (1935)
Q Consensus 1224 ~~~------------------------------~~~~a~ll~llG~wlaet----~~e~~~~I~~~Y~~~Av~~~e~~~~ 1269 (1935)
... ....++++.++|+|+.+. ..++.+++++.|.+ |+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~-a~~~~----- 288 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKE-ATKLD----- 288 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHH-HHHhC-----
Confidence 111 113467889999999999 77888888888876 54332
Q ss_pred chhhhHHHHhhhhhhHHHHHHHHHhhHHHHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHh
Q 000172 1270 TDKKSIERQCQTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLA 1349 (1935)
Q Consensus 1270 ~~~~~~~~~~~~~~~lA~f~D~~~q~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~y~~~~~~l~~~~~ 1349 (1935)
....++|+++|.|+|..+...... .... .
T Consensus 289 ------~~~~k~~~~~a~~~~~~~~~~~~~------------------------------~~~~-----------~---- 317 (352)
T PF02259_consen 289 ------PSWEKAWHSWALFNDKLLESDPRE------------------------------KEES-----------S---- 317 (352)
T ss_pred ------hhHHHHHHHHHHHHHHHHHhhhhc------------------------------cccc-----------c----
Confidence 134579999999999987643100 0000 0
Q ss_pred hcHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Q 000172 1350 MDREEAQKLLDDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVS 1393 (1935)
Q Consensus 1350 lD~~e~~~l~~~r~~fl~~Al~~Yl~sL~~s~~~~~~~i~Rlls 1393 (1935)
+..+..|+..||+||++|+..|+++..+++|||||
T Consensus 318 ---------~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 318 ---------QEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 02345799999999999999999999999999975
No 34
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=99.96 E-value=5.7e-28 Score=308.72 Aligned_cols=388 Identities=19% Similarity=0.250 Sum_probs=253.5
Q ss_pred cHHHHHHHHHhhhcccccchhhhhHHHHhhcCCCccccccccHHHHHHHHHHHHHHh---CCchhHHHHHHhccccchhh
Q 000172 1401 RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAID---HPYHTIFQLLALANGDRIKD 1477 (1935)
Q Consensus 1401 ~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~~~~~~~~~f~~~L~~Ll~ri~~~---hP~~~ly~L~a~~~s~~~~~ 1477 (1935)
++.+.....+-+.+.|...-+.++||+++.|....- .-+..++.+.+.. +-||.+|.+.+-...+.
T Consensus 1349 ~p~~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm--------~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~--- 1417 (1803)
T KOG0902|consen 1349 HPRLMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKM--------GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDE--- 1417 (1803)
T ss_pred CcHHHHHHHHHHHhCChhhhhhhhHHHHHHHhhcch--------hHHHHHHHHHhhhhHHHHHHHHHHhhhhhcccc---
Confidence 344566677788899999999999999999987431 1244455554432 66789999975332111
Q ss_pred hhccccchhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh-hhccccccccccchhhhhhccccccccccc
Q 000172 1478 KQRSRNSFVVDMDKKLAAENLLEELSSYHGAIIRQMKQMVDVYIKLAEL-ETRREDTNKRIQLPREIRCLRQLELVPVVT 1556 (1935)
Q Consensus 1478 ~~r~~~~~~v~~~r~~aa~~il~~l~~~~~~~~~~~~~l~~~~~~La~~-~~~~e~~~~~~~~~~~l~~l~~l~~vp~~t 1556 (1935)
....+ .. ....-....+.|++.+.....++...-..+++.+..+..- .+-..+..++..+.+.+..++ ..| -
T Consensus 1418 ~~~~~-~~-~~~~l~~~~e~i~~~~s~~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~kik---~~~--~ 1490 (1803)
T KOG0902|consen 1418 EAIVK-AD-IGEILDRVREEITGSLSGPARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKIK---VQP--G 1490 (1803)
T ss_pred ccccc-hh-HHHHHHHHHHHHHhcCCchhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhhc---ccC--c
Confidence 00000 00 0000111223444444433444544445566555555431 110000111222223333332 222 1
Q ss_pred cccCCCCC-----CcccCCC---ccccccccceEEEe----cCCCcceEEEEEecCCcEEEeeeecCCCcchhhHHHHHH
Q 000172 1557 ATVPIDCT-----CQYNEGS---FPYFKGLAESVMVM----NGINAPKVVECFGSDGHKYRQLAKSGNDDLRQDAVMEQF 1624 (1935)
Q Consensus 1557 ~~lpi~~~-----~~y~~g~---~~~I~~f~~~~~v~----~s~~~Pk~i~~~gsdGk~y~~L~K~G~dDlRqD~r~~Ql 1624 (1935)
.-+|.+|+ .+|..|. ...-+-|+.+|+|- .|.+. ...+.--+...-++|.| ||+|||....|+
T Consensus 1491 ~YlPs~P~~~v~~i~~~Sg~plQS~aK~PfmatF~vkr~~~~g~~~----~~k~~~~~WQa~IFKvG-DDcRQD~LaLQi 1565 (1803)
T KOG0902|consen 1491 CYLPSNPDAVVLDIDYKSGTPLQSAAKAPFMATFKVKRLEKDGLQC----RSKSQKISWQAAIFKVG-DDCRQDMLALQI 1565 (1803)
T ss_pred eecCCCCCceEEEeecCCCccchhhccCCeeEEEeeeeccCCcccc----cccccchhhhhhhhhcC-chHHHHHHHHHH
Confidence 12333332 2333332 01122244444442 11110 00000001112589986 999999999999
Q ss_pred HHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchh
Q 000172 1625 FGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVK 1704 (1935)
Q Consensus 1625 f~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1704 (1935)
+.++..+|+.-. .++++-+|+|+|.+|.||+||.|||+.+-+.+ |....
T Consensus 1566 islf~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdql--------Gr~t~------------------- 1614 (1803)
T KOG0902|consen 1566 ISLFKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQL--------GRETD------------------- 1614 (1803)
T ss_pred HHHHHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHh--------ccccc-------------------
Confidence 999999999765 89999999999999999999999999987663 11000
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecch
Q 000172 1705 DKRIAFQEVCENFRPVLHYFFLERFL--QPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGV 1782 (1935)
Q Consensus 1705 ~k~~~f~~i~~~~~pvl~~~f~~~f~--~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~ 1782 (1935)
.-+.+||..+|. ++..|.++|.||.+|+|+||+++|.|.+.|||.+|||||. -|+++|||||+
T Consensus 1615 --------------~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd-~G~~iHIDFGf 1679 (1803)
T KOG0902|consen 1615 --------------NGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDD-QGHIIHIDFGF 1679 (1803)
T ss_pred --------------ccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEcc-CCCEEEEeeee
Confidence 125677888876 5789999999999999999999999999999999999995 99999999999
Q ss_pred hhccccCC-CCCCCCCccccHHHHhhcccccc---chhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHH
Q 000172 1783 AFEQGLML-KTPERVPFRLTRDIIDGMGVTGV---EGVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKAL 1858 (1935)
Q Consensus 1783 ~F~~g~~l-~~pE~VPFRLTrniv~~mG~~Gv---eG~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~ 1858 (1935)
.||..++- -.-|. ||+||.+|+..||+.-- -..|...|.+++-+.|.+.+.|.+.++.|+--.|..++..+.+..
T Consensus 1680 ~~e~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg~~i~nl 1758 (1803)
T KOG0902|consen 1680 MFESSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRGQTIGNL 1758 (1803)
T ss_pred EEecCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCcchHHHH
Confidence 99987653 44567 99999999999994321 135888999999999999999999999999999999976655544
No 35
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-25 Score=273.69 Aligned_cols=197 Identities=23% Similarity=0.383 Sum_probs=174.8
Q ss_pred CcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCC
Q 000172 1601 GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNG 1680 (1935)
Q Consensus 1601 Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~ 1680 (1935)
..-...++|.| |||||+....|++..+-.+|...+ -.|+||+|+|+-+|.++||||.|+|++++|.|-...
T Consensus 585 WdL~SVIVKtG-dDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l---- 655 (847)
T KOG0903|consen 585 WDLRSVIVKTG-DDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRL---- 655 (847)
T ss_pred cceEEEeeecC-chHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccchhhHHHHHHhc----
Confidence 44566799986 999999999999999999999886 689999999999999999999999999999975321
Q ss_pred CCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000172 1681 GAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF-LQPAYWFEKRLAYTRSVAASSMVGYIVGLG 1759 (1935)
Q Consensus 1681 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f-~~p~~w~~~R~~FtrS~A~~S~vgYILGLG 1759 (1935)
++ . -.+++||...+ ++++.|-.+.+||..|+|+||+|+|+|.+.
T Consensus 656 -------~~-------------------~---------~~l~~F~~~~g~~NS~~yk~AQrNFvqSlagYSLvcYlLQvK 700 (847)
T KOG0903|consen 656 -------PN-------------------L---------ASLRHFFAAFGKPNSEKYKSAQRNFVQSLAGYSLVCYLLQVK 700 (847)
T ss_pred -------ch-------------------h---------hhHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 0 02446666655 477899999999999999999999999999
Q ss_pred CCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccch----hhHHHHHHHHHHHhcChHHH
Q 000172 1760 DRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG----VFRRCCEKTLSVMRTNKEAL 1835 (1935)
Q Consensus 1760 DRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~GveG----~Fr~~~~~t~~~LR~~~~~l 1835 (1935)
|||.+|||||. -|+++|||||+.+...+..-.-|..||.||.++++.|| |++| .|+..|...+..+|+|.+-|
T Consensus 701 DRHNGNILiD~-EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf~a~RKhadrI 777 (847)
T KOG0903|consen 701 DRHNGNILIDE-EGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGFMALRKHADRI 777 (847)
T ss_pred cccCCceEecC-CCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 99999999999999998887889999999999999999 7877 48899999999999999999
Q ss_pred HHHHHHHcc
Q 000172 1836 LTIVEVFIH 1844 (1935)
Q Consensus 1836 ~~iL~~fl~ 1844 (1935)
..+.|+|-.
T Consensus 778 v~lvEiMq~ 786 (847)
T KOG0903|consen 778 VLLVEIMQD 786 (847)
T ss_pred HHHHHHhhc
Confidence 999999854
No 36
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.90 E-value=1.1e-23 Score=254.66 Aligned_cols=165 Identities=20% Similarity=0.342 Sum_probs=137.7
Q ss_pred CcceEEEEEecCCcE-----------EEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCC
Q 000172 1589 NAPKVVECFGSDGHK-----------YRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSA 1657 (1935)
Q Consensus 1589 ~~Pk~i~~~gsdGk~-----------y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~ 1657 (1935)
.+|.-+.+..-+|.. |.+|+|+ +|||||+.|.|++++|+.+|+++. .+|.+.+|+|+|++++.
T Consensus 1026 ~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~--gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~ds 1099 (1374)
T PTZ00303 1026 SAPVTSPVTAVNGVSPESLHDSLPQECMFLYKR--ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDS 1099 (1374)
T ss_pred ccceeeeeeccCCcCccccccccchheeEEEec--CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCc
Confidence 388888888889988 9999995 699999999999999999999987 89999999999999999
Q ss_pred ceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHH
Q 000172 1658 GILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFE 1737 (1935)
Q Consensus 1658 GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~ 1737 (1935)
|+||+|++. ++.+|... . +..||. +.++.
T Consensus 1100 GLIEfVps~-tLAsI~~~--------------------------------~------------Il~YLr--~~~t~---- 1128 (1374)
T PTZ00303 1100 GLIEKAEGR-ELSNLDNM--------------------------------D------------IASYVL--YRGTR---- 1128 (1374)
T ss_pred ccEEEecch-HHHHhhhh--------------------------------H------------HHHHHH--hcCcH----
Confidence 999999974 56665310 0 112222 12221
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhcccc
Q 000172 1738 KRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVT 1811 (1935)
Q Consensus 1738 ~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~ 1811 (1935)
...||++|+|.||+++||||+||||++|||||. +|+++|||||++|+....-+.+-..|.|+-.+|..++|.+
T Consensus 1129 ~~~NFi~S~AGYsViTYILgIgDRHngNILId~-dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~ 1201 (1374)
T PTZ00303 1129 SCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT-NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQC 1201 (1374)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCceeEcC-CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHH
Confidence 246999999999999999999999999999996 9999999999999987655667778999999998877643
No 37
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4.8e-13 Score=183.29 Aligned_cols=578 Identities=21% Similarity=0.184 Sum_probs=380.3
Q ss_pred hhhhhhcCCCCchhHHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhcCChHHHHHHHHHHhhhhccccChHHHHHHhHhH
Q 000172 53 AKEALASGPQSRPKMETIIITLMHLALQSESVELEAVFMMCTVSALYPCQRELVNVALDNLSQQLQYTTRWKYLEELLGP 132 (1935)
Q Consensus 53 ~~e~~~~~~~~~~~~~~~l~~la~~~~~s~~~e~~~~f~~~~~~~~~~~~~~l~~~vl~~~~~~~~y~~~~~~~~~~l~~ 132 (1935)
+...++.+||+.-++++.++|++|...+++..+.+.+|+||..+..+++..+|+.+++..++..+.+++|.+|+...+++
T Consensus 1131 ~~~el~~~p~p~~F~~~vI~t~~~~is~~~k~~Lqs~~eils~S~~s~~~ieL~i~~l~~~sn~v~~k~ri~~l~~ll~~ 1210 (2806)
T KOG0892|consen 1131 DFLELDAAPIPPHFPLTVIITLFHLITNNHKTKLQSYLEILSVSPDSYQKIELIIDILAAESNNLHKKHRIKYLYHLLAS 1210 (2806)
T ss_pred chhhcCCCCCCcchhHHHHHHHHHHHhccchHHHHHHHHHcccCCcchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCccchhhHhHHhhhcCCCChHhHHHHhhhhhhhHHHhcCCccchHHHHHHhCCcHHHHHhhhchhHHHhhhh
Q 000172 133 ILFCWVACGVSLIALVEIRRLFVSDAEPCNFVQYCCHWLLPALVLHADTSNLNWMAKIAREPLADLVKNHFVPIFSISMA 212 (1935)
Q Consensus 133 l~~~w~~~~~sl~~~~~~~~l~~~~~~~~~f~~~~~~~l~p~l~~~~~~~~~~~~a~~~~~~~~~l~~~~f~~i~~~~~~ 212 (1935)
|++.|+.+|++......-+ +-.|-+||-|.|...-|..
T Consensus 1211 ll~~~i~Sgl~~ags~v~~------------I~~l~hyI~p~l~~~mDvs------------------------------ 1248 (2806)
T KOG0892|consen 1211 LLCKDILSGLSELGSTVLS------------IYFLSHYINPRLTIFMDVS------------------------------ 1248 (2806)
T ss_pred HHHHHHHhhhhhhhHHHHH------------HHhhHHhcCcccccccchh------------------------------
Confidence 9999999988765544332 4467889999998887766
Q ss_pred ccccCCCchHHHHHHHHHhHHhhhhccHHHHHHHHHHhhHHHHHHHHHhcccCCCCCCCccchhhhhhhhhhhhcccccc
Q 000172 213 WHCSERSDSELGALVLQSSILHLAEISEIERDKLIKKHLVSIVSHIISLASCTSDPAVPYFSRDTIVHAVRTVVDGFLEM 292 (1935)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~~~~iv~~ll~~~~~~~~p~pp~f~~~~~~~~i~~~~d~~~~~ 292 (1935)
+|+.....++..+|++..+-..+...++..++.+.. |++.++.++.+.+.+++..|
T Consensus 1249 -~~s~t~~~~i~~~V~qt~v~y~~~~~~N~~~~~~~~-----------------------~~~~~~~l~~~~l~~~~~~~ 1304 (2806)
T KOG0892|consen 1249 -IMSFTNSCDIPSFVLQTVVWYCGRLFENLEHFSSIP-----------------------FSSVVIDLVKQRLAIGKLFA 1304 (2806)
T ss_pred -hhhccccccHHHHHHHHHHHHHHHHHhhhhhhhhcc-----------------------chhheehhhhhhHHHHHHHh
Confidence 677777888899999888776666555544333322 88888888889999999999
Q ss_pred cCCCcccceecccccCCchhHHHHHHHHHHHHHHhhhcccchhhhhhHHHHHHhcCCcceecchhHHHHHhhhhhccccC
Q 000172 293 QDCPRSAGVVDKINVFRPDRVFMFIVELHYKIAAAVHHRHKCHRLAGVEVLINVLGHRAAVSSASNYLFNLVGQFIGVYA 372 (1935)
Q Consensus 293 ~~~~~~~~~~~k~~~~~pd~i~~~Ll~~~~~~~~~~~~~~~~h~l~~~~~l~~~lg~~~~~~~~~~y~~~~l~~~i~~~~ 372 (1935)
++...-.+|...++.|.| +.-+.++..+.-..+.+|-|+.+..+..+-.+||.+...+..+-+.+ ..+.+-..
T Consensus 1305 ~d~~kn~~i~~~~~lf~~----~~~~~~~~~~~~~~~~~~tr~~~s~l~~~~~lL~~~~~~~~~~~~~~---~~f~~l~~ 1377 (2806)
T KOG0892|consen 1305 TDEEKNETISFRICLFLP----FSDTFIFSNYRLMIHLRITRQHLSALTELSLLLGIARFHLKKLKPSF---TDFDKLFS 1377 (2806)
T ss_pred hhhhhcchhhhhhhhccC----chhHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccccCccc---chHHHHHH
Confidence 888888889999999998 22233333333444678888999999988899999776555555522 23333334
Q ss_pred hhhhHHHHHHHHHhhhcCCCchhhhhhhhccccceeeccccccccCCCCCCcccchhhHHhhhhHhhcCCCccHHHHhhh
Q 000172 373 LQDQCCRIVSALLKAFRDNPSKEIVNVLGEQLQFLVSKLVACCIPSEANEPSVSRSSQVLSLLLQLTVDSDPSLHDYIRE 452 (1935)
Q Consensus 373 l~~~Cc~ll~~~~~~~~~~~~~~~~~~l~~~L~~iv~~lv~~~~~~~~~~~~~~~~~~~~~lL~~lvv~~~~~L~~~i~~ 452 (1935)
++.+||++......+.+ +. .++ +..+...+..++||..++...+..+++-|.+
T Consensus 1378 l~~~c~~~~~~~~~~~~---------a~-------------~~~-----~~~~~~~~~~vNLl~~~~~~~~~~~~k~i~e 1430 (2806)
T KOG0892|consen 1378 LARQCCDFKGFCYDTIK---------AM-------------EDI-----QDFGTWKKGYVNLLLNFEYEGDGFLREQIRE 1430 (2806)
T ss_pred HHHHHHHHHHHHHHHHH---------HH-------------Hhh-----HHHHHHHHHHhHHHHHhhhcccchHHhHHhh
Confidence 77899999888555542 01 111 1123477889999999999999999999999
Q ss_pred cCCCCCChhhHhHHHHHHHhhccC---C--h-----HHHHHHHhhh---------ccC------Ccc--------ccccc
Q 000172 453 LEPFPEIDIFDGIRSFHEELCQAY---S--A-----RDHLLKFVQR---------ACN------LPS--------RLLPW 499 (1935)
Q Consensus 453 L~pfPd~~~fk~~r~~~~~~~~~~---s--l-----~~ei~~fl~~---------~~~------l~~--------~l~~~ 499 (1935)
+.|-|..+.+.-.++.+...+.+. + + .....||..+ .|+ ++. ...+.
T Consensus 1431 ~~~s~~~~~~~v~vs~~~~~~~~~~~~~~~lkl~~~~~L~~~~~~~~~~~n~l~~~c~k~~~~~~~~~~n~~~s~~t~~~ 1510 (2806)
T KOG0892|consen 1431 LRSSMTGKNDWVDVSNKLRERSARISMNNLLKLYFWTVLDAHFRKVLHSLNLLFWKCYKARSRELQDLHNKLFSTDTMGW 1510 (2806)
T ss_pred hhccccCCcchhhhhhHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999998888755211 1 1 1111222221 111 110 00111
Q ss_pred ccc---------------cCCCCchhHHHHHHHHHhhcCCCCCcceeecCCCccccccc-cccccCCCCCcccccccccc
Q 000172 500 RWF---------------VTPNDASSIRAWVSDFISRVGIGDPHCVVFHLPRDSIYMHA-CRPINHGSGSATEFNFHLDA 563 (1935)
Q Consensus 500 ~~~---------------~~~~~~~~~~~lv~~ll~~~~~~~~h~~~f~~~~~~~~~~~-cl~~~~~~~~~~~~~~~~~~ 563 (1935)
.++ .....+++..+.+..++.+++..++|-+.|+.|+..+..++ |.- .+-. +...... ...
T Consensus 1511 ~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~-~~~~-~~n~~~~-~K~ 1587 (2806)
T KOG0892|consen 1511 FWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIR-MFFE-GSNIMEL-TKN 1587 (2806)
T ss_pred HHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhh-hccc-cchhhhh-hhh
Confidence 111 11111222223455678889999999999999987774432 110 0000 0000000 011
Q ss_pred ccchHHHHHHHHHHHHhhccCCccccchHHHHHHHHhcccccCchhcchhhhhhHHHHHhhcCCcHHHHHHhhhhhhhhh
Q 000172 564 GISEELLIAVLKILKKYLMDDSVQIVDMTSQTLRGILSTEKGQRAVMSFDSYERSLLEVHSKGVNVELVETFLLDLERKF 643 (1935)
Q Consensus 564 ~~~~~~~~~iL~~L~~~L~~~~~~~~~~a~~~L~~ils~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 643 (1935)
++...........+..+..+..+.+.....++....+++-.+......|..|.+.+.+
T Consensus 1588 ~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~---------------------- 1645 (2806)
T KOG0892|consen 1588 LIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTT---------------------- 1645 (2806)
T ss_pred hccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCc----------------------
Confidence 1111112334455566666666666666666666666665555443333322222211
Q ss_pred hhhhcccccCCCCCCCCcccccCCCChhhhHHHHHHHhhccCCchhhHhhHHHHhccHHHHHHHhHHHHHHHhcCCCcch
Q 000172 644 KVFWVSLSANGISPEKSTVWETDGKTFETWICPLTYSLIGCCNDVVLRLCQDIVLLKSEVAELLLPSVVVNLAGSKNVDV 723 (1935)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~W~~~~~s~~eWir~Ls~~Ll~~s~s~~Lr~c~~L~~~~~~~Ae~LfP~~~~~~~~e~d~~~ 723 (1935)
..|.++......|++.+...+|-.+.+.. |..+....-.+-+.++|.+.. +
T Consensus 1646 -----------------~~~st~~~~~~t~i~~~i~~~l~~~s~~~---~~~~~~~~~yi~~~~~~sl~~--------n- 1696 (2806)
T KOG0892|consen 1646 -----------------HSLSTYMANFSTSICQLIICLLLLESDFN---PGNNLKQKDYIFELILSSLLK--------N- 1696 (2806)
T ss_pred -----------------hhhccccccccHHHHHHHHHHHHhhcccc---HHHHHHHHHHHHHHHhhcccc--------c-
Confidence 11555555678899999988874333322 445554444444444444320 0
Q ss_pred hHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccccCccccchhhccccccccccc
Q 000172 724 DLQKLISSQVQKYIFTESNKLIKSIQVFLNALNELRLCHVMERSSSVPPKRETIGVMQFNGRYSKDVVATSNATMTTSWD 803 (1935)
Q Consensus 724 ~~~~~Ls~~~~~~~~~~s~~~~~~iq~~l~~~~~lR~~~~~e~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 803 (1935)
++ ....+-+|.+.++|.+.- .+. . +.|.
T Consensus 1697 -----------------~~---~~~~m~~ni~~~~~~~~~-~~~-~------------------------------n~~~ 1724 (2806)
T KOG0892|consen 1697 -----------------SN---SIFKMDMNILKYLRRQLG-CHA-F------------------------------NPFE 1724 (2806)
T ss_pred -----------------hh---HHHHHHHHHHHHHHHhhc-hhh-h------------------------------cchh
Confidence 11 122344555555565410 000 0 1234
Q ss_pred cccccccCHHHHHHHHHHhcchHHHhhhhHhhh
Q 000172 804 KVYWLSVDYLRVAKSAVICGSYFTSVMYVEHWC 836 (1935)
Q Consensus 804 ~~~wL~Id~~~lA~aA~~C~AyatALly~E~~~ 836 (1935)
..+|+++++...+-.+.+|.+|-..++|.=+.-
T Consensus 1725 ~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~ 1757 (2806)
T KOG0892|consen 1725 IYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHS 1757 (2806)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 457999999999999999999999988876654
No 38
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=99.24 E-value=1.9e-12 Score=102.87 Aligned_cols=33 Identities=45% Similarity=0.806 Sum_probs=27.7
Q ss_pred CccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000172 1903 EMRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1903 ~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
+++||++||++||++|||++|||+||+||+|||
T Consensus 1 e~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 1 EPLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp --S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 368999999999999999999999999999997
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.16 E-value=1.9 Score=59.21 Aligned_cols=186 Identities=12% Similarity=0.045 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..++..-.++|-|.+|+-+.+..... . ...+.....|..+|...++++.+.-.... +
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 635 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADA--------A------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA 635 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc--------C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 456888889999999999999875432 1 12245677888999999999887766431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.......-|++.|+|++|+.+|+..+...|. +.....++.+.+...|.+
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPD------------------------------NTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------CHHHHHHHHHHHHHcCCH
Confidence 1335667789999999999999998874332 122356788899999998
Q ss_pred hHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHH
Q 000172 963 HVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYR 1042 (1935)
Q Consensus 963 ~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~ 1042 (1935)
+....+.+.+....+ .+.........+..+.|+|+.-.... ...... .++.. ...+-+....+.|+.+++.+
T Consensus 686 ~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~-~~~~~~-~~~~~---~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 686 ESAKKIAKSLQKQHP---KAALGFELEGDLYLRQKDYPAAIQAY-RKALKR-APSSQ---NAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHHHHHHHHHhhCc---CChHHHHHHHHHHHHCCCHHHHHHHH-HHHHhh-CCCch---HHHHHHHHHHHCCCHHHHHH
Confidence 888777766544321 12233334456677888887432211 110000 01111 11111222335678877777
Q ss_pred HHHHHHH
Q 000172 1043 KLKHSKQ 1049 (1935)
Q Consensus 1043 ~i~~aR~ 1049 (1935)
.++++..
T Consensus 758 ~~~~~l~ 764 (899)
T TIGR02917 758 TLEAWLK 764 (899)
T ss_pred HHHHHHH
Confidence 7765543
No 40
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=93.85 E-value=0.18 Score=57.18 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+.-|++|+..++......+..++.-|-..+ .++.|.....+.+.+.|...++..+||||..|...
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYE 122 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 468999999999999876677889999997654 25668888889999999999999999999999876
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHhc
Q 000172 1435 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 1470 (1935)
Q Consensus 1435 ~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~ 1470 (1935)
.. -...|..+|.+.|...|. +.+|.|.+..
T Consensus 123 ~~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~ 155 (184)
T smart00145 123 PY------LDSALARFLLERALKNQRLGHFFYWYLKSEL 155 (184)
T ss_pred cc------cccHHHHHHHHHHhhCHHHHHHHHHHHHHHc
Confidence 21 125699999999998886 5667776543
No 41
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=92.80 E-value=0.3 Score=54.54 Aligned_cols=102 Identities=16% Similarity=0.239 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCc------------cHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSS------------RQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~------------~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+.-|++|+...+......+..++.-|-..+. +..|.+...+.+...+...++..+||||..|..+
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYE 124 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999887766678889998976653 4568888899999999999999999999999986
Q ss_pred cccc-ccccHHHHHHHHHHHHHHhCCc---hhHHHHHH
Q 000172 1435 KDAL-GLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 1468 (1935)
Q Consensus 1435 ~~~~-~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a 1468 (1935)
.... +.....+.|..+|.+.|...|. +.+|.|.+
T Consensus 125 ~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~Lk~ 162 (166)
T cd00870 125 NLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYLKV 162 (166)
T ss_pred ccccccccccccHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 4200 0001346799999999998886 34555543
No 42
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=92.15 E-value=0.53 Score=51.88 Aligned_cols=95 Identities=15% Similarity=0.219 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCCc
Q 000172 1368 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 1435 (1935)
Q Consensus 1368 ~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~~ 1435 (1935)
.++.-+++|+...+......+..++.-|=..+ .+..|.....+.+.+.|.......+|||+..|..+.
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 68888999999887777777888888885543 346788888999999999999999999999998764
Q ss_pred cccccccHHHHHHHHHHHHHHhCCc---hhHHHHHH
Q 000172 1436 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLA 1468 (1935)
Q Consensus 1436 ~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a 1468 (1935)
. ....|..+|.+.|...|. +.+|.|.+
T Consensus 119 ~------~~~~L~~fLl~ra~~s~~~~~~l~W~L~~ 148 (152)
T cd00864 119 Y------LDSYLARFLLERALKSQRLGHQLYWNLKS 148 (152)
T ss_pred c------CCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 125699999999999886 45566544
No 43
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=91.89 E-value=0.23 Score=55.62 Aligned_cols=97 Identities=15% Similarity=0.218 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+..+++|+...+......+..++.-|-..+ .++.|.+...+.+++++...+...+||||..|.++
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE 117 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYE 117 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcc
Confidence 468999999999999877777889999997654 24668888899999999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHh
Q 000172 1435 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 1469 (1935)
Q Consensus 1435 ~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~ 1469 (1935)
.. ..+.|..+|.+.|...|. +.+|.+.+.
T Consensus 118 ~~------~ds~La~FLl~Ral~n~~igh~lfW~L~~E 149 (171)
T cd00872 118 PY------HDSDLVRFLLKRALRNQRIGHFFFWHLRSE 149 (171)
T ss_pred cc------cCCHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 41 235799999999998886 455666543
No 44
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=88.97 E-value=1.1e+02 Score=42.14 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------c
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------H 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~---------~ 883 (1935)
..+|......|-|..|+.+.+..... .| ..+.....+..+|...+++|.+..+... .
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~--------~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKY--------AP------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 35677888899999999998865432 11 1234456788888888888888776541 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
.+......|.+.|++++|+.+|+..++.
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 392 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1345667888999999999999988764
No 45
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=88.22 E-value=0.71 Score=52.46 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCCc
Q 000172 1368 LALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTK 1435 (1935)
Q Consensus 1368 ~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~~ 1435 (1935)
.|+.-+++|+...+......+..++.-|=..+ .++.|.....+.+++.|...++..+||||..|....
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~ 124 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEP 124 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSS
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheecc
Confidence 58888999998877665667888888887654 246688888999999999999999999999998762
Q ss_pred cccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHhc
Q 000172 1436 DALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALA 1470 (1935)
Q Consensus 1436 ~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~ 1470 (1935)
. ....|..+|.+.|...|. +.+|.|.+..
T Consensus 125 ~------~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~ 156 (184)
T PF00613_consen 125 Y------HDSPLARFLLRRALKSPRIAHQLFWYLKAEL 156 (184)
T ss_dssp S------SS-HHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred c------cccHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 1 125799999999998886 4667776544
No 46
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=87.94 E-value=1.1e+02 Score=41.94 Aligned_cols=290 Identities=11% Similarity=0.042 Sum_probs=146.8
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhhc---c---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCC
Q 000172 858 RHIEILVSAVTQINEPDSLYGIIQS---H---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPS 931 (1935)
Q Consensus 858 ~~~e~L~~IY~~IdEPDa~yGI~~~---~---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~ 931 (1935)
.....|++.|.+-++.|.+..+... . +.+..+.-|-+.|++++|+..|+.-.+.+ ..|+
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---------------~~pd 324 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG---------------VSID 324 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCC
Confidence 3567899999999999999888763 1 24688999999999999999998765422 1333
Q ss_pred cCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCC
Q 000172 932 VHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFP 1011 (1935)
Q Consensus 932 ~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~ 1011 (1935)
......+++++-.+|..+......+.+..... ..+....-.-..+-.+.|+++..... +.. +
T Consensus 325 --------------~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~--~~d~~~~~~Li~~y~k~G~~~~A~~v-f~~-m 386 (697)
T PLN03081 325 --------------QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARNV-FDR-M 386 (697)
T ss_pred --------------HHHHHHHHHHHHhccchHHHHHHHHHHHHhCC--CCCeeehHHHHHHHHHCCCHHHHHHH-HHh-C
Confidence 11355788888888876655433333222221 11112222223344445555532221 111 1
Q ss_pred CCCCccccchhhhhHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-HHHHhHHHHHHHhhhhc
Q 000172 1012 SGQNIKSGHFHENLHSCLTAL-REGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVK-LQILCHLGVAWDIRWKS 1089 (1935)
Q Consensus 1012 ~~~~~~~~~f~~~L~~aLlAl-~~~d~~~f~~~i~~aR~~l~~eLsa~s~ES~~r~Y~~lvr-Lq~L~ELEei~ei~~k~ 1089 (1935)
. .++...|+.. +.+. ++|+.+++.+..+..... ...--...|..++. +-.-..+++..++....
T Consensus 387 ~--~~d~~t~n~l----I~~y~~~G~~~~A~~lf~~M~~~--------g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 387 P--RKNLISWNAL----IAGYGNHGRGTKAVEMFERMIAE--------GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred C--CCCeeeHHHH----HHHHHHcCCHHHHHHHHHHHHHh--------CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 1 1233345432 2222 668888888777765431 11111112333332 11122233332221100
Q ss_pred cCcccccccccccccCCCCCccchhhhHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Q 000172 1090 SGESINIYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRK 1169 (1935)
Q Consensus 1090 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~e~~epiL~~R~~vl~il~~~e~~~~~wl~~A~laRK 1169 (1935)
. +. ..+.|+...-..+.....+ ..+++ + .... ++-.+...+ ..+|......|++
T Consensus 453 ~--------~~-----~g~~p~~~~y~~li~~l~r-----~G~~~--e----A~~~-~~~~~~~p~-~~~~~~Ll~a~~~ 506 (697)
T PLN03081 453 S--------EN-----HRIKPRAMHYACMIELLGR-----EGLLD--E----AYAM-IRRAPFKPT-VNMWAALLTACRI 506 (697)
T ss_pred H--------Hh-----cCCCCCccchHhHHHHHHh-----cCCHH--H----HHHH-HHHCCCCCC-HHHHHHHHHHHHH
Confidence 0 00 0000111011111111111 01111 1 1111 111122222 4568888889999
Q ss_pred cCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhh
Q 000172 1170 GFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISEN 1223 (1935)
Q Consensus 1170 ag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~ 1223 (1935)
.|+++.|..+..++..+.+.. ...-...++.+=..|+.++|..+++.+..+
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEK---LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCC---CcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999887775543321 011122577777889999999998877655
No 47
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=87.61 E-value=0.98 Score=50.47 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhc-cCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCC
Q 000172 1367 GLALEGYKRCLV-IGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGS 1433 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~-~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~ 1433 (1935)
..|+..|++|+. .+++ ....+..++.-|-..+ .+..|.+...+.+++.+....+..+||||..|.+
T Consensus 38 p~aLp~~L~s~~~w~~~-~~~e~~~LL~~W~p~~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLky 116 (169)
T cd00869 38 PNALPLVLASAPSWDWA-NLMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKF 116 (169)
T ss_pred cHHHHHHHHhcccCcHH-HHHHHHHHHhCCCCCCHHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 468889999874 4443 3445778888886654 2456888889999999999999999999999998
Q ss_pred CccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHh
Q 000172 1434 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLAL 1469 (1935)
Q Consensus 1434 ~~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~ 1469 (1935)
+.. -...|..+|.+.+...|. +.+|.|.+.
T Consensus 117 E~~------~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e 149 (169)
T cd00869 117 ELY------LKSALVRFLLSRSLVSLRFAHELYWLLKDA 149 (169)
T ss_pred ccc------CcChHHHHHHHHHhcCHHHHHHHHHHhHHH
Confidence 641 125688999999988876 466666553
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=86.82 E-value=87 Score=42.88 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
...|...+.++.+.|+++.|...+.++..+.+... . .....+..++..|+.+.|+..++.++...
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~--~-a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP--Y-VRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H-HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45677889999999999999998877765433210 0 01226899999999999999998777653
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=86.18 E-value=1e+02 Score=38.61 Aligned_cols=94 Identities=19% Similarity=0.092 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhH
Q 000172 1160 LLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGK 1239 (1935)
Q Consensus 1160 wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~ 1239 (1935)
+...+....+.|++..|...+.++....+. .......++.+..+|+.+.|+..++..+... +....+..+++.
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~---P~~~~~~~l~~~ 324 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPG----ADLLLALAQLLEEQEGPEAAQALLREQLRRH---PSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---cCHHHHHHHHHH
Confidence 344566677889999999988776554332 1112236899999999999999998777663 233455566776
Q ss_pred hHHHh---hcCChHHHHHhhhchh
Q 000172 1240 WLAES---RSSNSRIILENYLKPA 1260 (1935)
Q Consensus 1240 wlaet---~~e~~~~I~~~Y~~~A 1260 (1935)
++... +..+.-.+++..++..
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHH
Confidence 76644 2334444455555433
No 50
>PLN03218 maturation of RBCL 1; Provisional
Probab=84.38 E-value=79 Score=45.53 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc--------
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------- 882 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-------- 882 (1935)
-|..+-.+..+++.+..|+...+.-.+. + ..+.......|+..|.+.++.|.+..+...
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~--------G-----l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P 505 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEA--------G-----LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHc--------C-----CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC
Confidence 4556777778999999999887753211 0 122345678999999999999998888652
Q ss_pred --cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc
Q 000172 883 --HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 960 (1935)
Q Consensus 883 --~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 960 (1935)
.+....+..|-+.|++++|+..|+...+.+ ..|+ ......+|+++...|
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G---------------v~PD--------------~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKN---------------VKPD--------------RVVFNALISACGQSG 556 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---------------CCCC--------------HHHHHHHHHHHHHCC
Confidence 123578899999999999999998765532 1343 123567889888888
Q ss_pred hhhHHHHHhhhc
Q 000172 961 CMHVLDMYCKGL 972 (1935)
Q Consensus 961 ~~~~L~~y~~gL 972 (1935)
.++....+.+.+
T Consensus 557 ~~deA~~lf~eM 568 (1060)
T PLN03218 557 AVDRAFDVLAEM 568 (1060)
T ss_pred CHHHHHHHHHHH
Confidence 877665554443
No 51
>PLN03218 maturation of RBCL 1; Provisional
Probab=83.95 E-value=64 Score=46.46 Aligned_cols=122 Identities=10% Similarity=0.089 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-------c
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------H 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-------~ 883 (1935)
-|..+-.+..+||.+..|+-.++.-.+. + ..+.......|+..|.+.++.|.+..+... +
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~--------G-----v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNA--------G-----VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHc--------C-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 4567788888999999999877653211 0 122345678999999999999998887642 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc
Q 000172 884 ---KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 960 (1935)
Q Consensus 884 ---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 960 (1935)
.....+..|-+.|++++|+..|+........ ..|+ ......++.++-..|
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-------------i~PD--------------~vTynaLI~ay~k~G 593 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-------------IDPD--------------HITVGALMKACANAG 593 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-------------CCCc--------------HHHHHHHHHHHHHCC
Confidence 2467899999999999999999876542111 1343 112456888888888
Q ss_pred hhhHHHHHhhhc
Q 000172 961 CMHVLDMYCKGL 972 (1935)
Q Consensus 961 ~~~~L~~y~~gL 972 (1935)
.++....+.+.+
T Consensus 594 ~ldeA~elf~~M 605 (1060)
T PLN03218 594 QVDRAKEVYQMI 605 (1060)
T ss_pred CHHHHHHHHHHH
Confidence 877665555443
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=82.34 E-value=61 Score=41.41 Aligned_cols=56 Identities=14% Similarity=-0.013 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHH
Q 000172 1159 HLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAK 1218 (1935)
Q Consensus 1159 ~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq 1218 (1935)
..+-.+++|-+.|.++.|...+.++....+. .......|.+++..|+++.|.+.-+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~----~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPD----AYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566789999999999999999877554332 1111237999999999999988765
No 53
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=79.03 E-value=3.5e+02 Score=39.72 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHh
Q 000172 1159 HLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVG 1238 (1935)
Q Consensus 1159 ~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG 1238 (1935)
.+...+..+...|++..|...+.++..+.+... . ..-..|.+++.+|+.+.|+..++.++...+ ..++.+..+|
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~-~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~~~~~~~a~a 536 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSV--W-LTYRLAQDLRQAGQRSQADALMRRLAQQKP---NDPEQVYAYG 536 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHH
Confidence 456678888999999999999887765433210 0 012268999999999999999998876533 2344455555
Q ss_pred HhHHH
Q 000172 1239 KWLAE 1243 (1935)
Q Consensus 1239 ~wlae 1243 (1935)
.++.+
T Consensus 537 l~l~~ 541 (1157)
T PRK11447 537 LYLSG 541 (1157)
T ss_pred HHHHh
Confidence 55544
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=75.69 E-value=2.7e+02 Score=38.20 Aligned_cols=63 Identities=14% Similarity=-0.045 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCch-HHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1158 QHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLP-HLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1158 ~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~-~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
..+...+....+.|++..|...+.++....+. ..... ..+..+...|+.+.|+..++..+...
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~----~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGV----TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34566788899999999999988766443221 11011 14778999999999999998776653
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.54 E-value=38 Score=41.35 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc------cc--
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------HK-- 884 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~------~~-- 884 (1935)
..+|+.=.+-|+|-+|=-++..... .-+.++..-+|.++|..||+|..+--+... .+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---------------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---------------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---------------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 3678888888888887665544322 124577888999999999999987655431 11
Q ss_pred -hhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 885 -LSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 885 -l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
+.-+.+-||-.|+.++|+.+|...+..++
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~ 321 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHP 321 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 34688999999999999999999987543
No 56
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=74.20 E-value=24 Score=44.73 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=83.1
Q ss_pred cCCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhcc
Q 000172 1599 SDGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTR 1678 (1935)
Q Consensus 1599 sdGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~ 1678 (1935)
++|+ +.+.|| .+++-|.....++..+|.-... -.+.++++++++-+..-|-.|||++...-
T Consensus 68 ~~g~--kivYKP--Rsl~~d~~f~~l~~~ln~~~~~------~~~~l~~~~~l~~g~~YgW~EfI~~~~c~--------- 128 (370)
T PF13575_consen 68 SSGK--KIVYKP--RSLSIDKAFNDLLEWLNEKNGT------PSLDLPTPKVLDRGDGYGWQEFIEHEPCN--------- 128 (370)
T ss_pred CCCC--EEEEeC--cccHHHHHHHHHHHHHhhhccc------cccccccceeeeccCcceeEEEecCCCCC---------
Confidence 3553 457896 6899999999999988886432 13568888999987779999999853110
Q ss_pred CCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhccc
Q 000172 1679 NGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGL 1758 (1935)
Q Consensus 1679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGL 1758 (1935)
+ + .+ -.+|-+-++....+.|+||.
T Consensus 129 -----------------------~---~----~e--------------------------v~~yY~r~G~llal~y~L~~ 152 (370)
T PF13575_consen 129 -----------------------S---E----EE--------------------------VERYYYRLGVLLALLYLLNG 152 (370)
T ss_pred -----------------------C---H----HH--------------------------HHHHHHHHHHHHHHHHHhCC
Confidence 0 0 00 01355567888899999999
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhcc
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAFEQ 1786 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F~~ 1786 (1935)
.|=|-+||.-+ -+..|=||+-..|..
T Consensus 153 ~DlH~ENIIa~--g~~PvlIDlETlf~~ 178 (370)
T PF13575_consen 153 TDLHFENIIAS--GEYPVLIDLETLFHP 178 (370)
T ss_pred CcccccceEEe--CCCcEEEehhhhCCc
Confidence 99999999996 578899999988875
No 57
>PLN03077 Protein ECB2; Provisional
Probab=70.89 E-value=4.6e+02 Score=37.14 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=62.8
Q ss_pred cCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc------c
Q 000172 810 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS------H 883 (1935)
Q Consensus 810 Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~------~ 883 (1935)
.-|..+-.+..+++.+..|.-..+.....- ..........|++.|.+-++.|.+.-+... .
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-------------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERKG-------------LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHhC-------------CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 355566667777888888887776543210 112244667899999999999988888753 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVR 910 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~ 910 (1935)
+.+..+..|.+.|++++|+..|+....
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 346788899999999999999987653
No 58
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=69.93 E-value=59 Score=39.59 Aligned_cols=30 Identities=27% Similarity=0.125 Sum_probs=25.7
Q ss_pred HHhhcccCCCCCCeEEEecCCCcEEEeecchh
Q 000172 1752 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1783 (1935)
Q Consensus 1752 vgYILGLGDRH~~NILid~~TG~vvHIDfg~~ 1783 (1935)
..+.+.=||=|++||+++. |.+.-|||+.+
T Consensus 185 ~~~~liHgD~~~~Nil~~~--~~i~lIDfd~~ 214 (313)
T TIGR02906 185 KIRGFCHQDYAYHNILLKD--NEVYVIDFDYC 214 (313)
T ss_pred CcCceEcCCCCcccEEEeC--CcEEEEECccc
Confidence 4577889999999999996 78999999954
No 59
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=69.72 E-value=10 Score=42.78 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=53.1
Q ss_pred ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCCccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHhcc
Q 000172 1400 SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALAN 1471 (1935)
Q Consensus 1400 ~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~~ 1471 (1935)
+++.|.....+.+.+.|....+..+|||++.|..... ..|..+|.+.++..+. +.+|.+.+...
T Consensus 83 ~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~--------~~l~~FLl~~A~~s~~faHql~W~lkae~~ 149 (175)
T cd00871 83 GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKM--------GYVEEYILETAKRSQLFAHQIIWNMQTNCY 149 (175)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc--------chHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence 3678999999999999999999999999999998642 3588899999887654 78888877543
No 60
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=67.90 E-value=6e+02 Score=37.38 Aligned_cols=115 Identities=21% Similarity=0.257 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+|.....-|-|..|+-+.+..... .|+ .......|..+|.. +++|.+......
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~--------~p~------~~~a~~~L~~l~~~-~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRM--------DPG------NTNAVRGLANLYRQ-QSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCC------CHHHHHHHHHHHHh-cCHHHHHHHHHhCCHHHHHHH
Confidence 346789999999999999998876432 111 12344556667754 345554443321
Q ss_pred ---------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHH
Q 000172 883 ---------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLM 953 (1935)
Q Consensus 883 ---------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~Glm 953 (1935)
..+..+...|...|++++|+.+|+..++.+|. +......+-
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~------------------------------~~~~~~~LA 502 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG------------------------------SVWLTYRLA 502 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHH
Confidence 01223566788999999999999999885442 112345677
Q ss_pred HHHHhhchhhHHHHHhhh
Q 000172 954 RSLQQVGCMHVLDMYCKG 971 (1935)
Q Consensus 954 rcL~~LG~~~~L~~y~~g 971 (1935)
+++...|.++....+.+.
T Consensus 503 ~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 788889987776555544
No 61
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=64.71 E-value=2e+02 Score=39.63 Aligned_cols=281 Identities=11% Similarity=0.062 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+..+-.+||-+..|...++.- ..+.......|+..|.+-+++|.+..+...
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m-----------------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGM-----------------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC-----------------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 346677778899999998877632 011234567899999999999998888642
Q ss_pred -cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhch
Q 000172 883 -HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 961 (1935)
Q Consensus 883 -~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 961 (1935)
.+....+..|-+.|++++|...|+...+.+- .|+ ......++..+-..|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~---------------~~d--------------~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF---------------PLD--------------IVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCC---------------CCC--------------eeehHHHHHHHHHCCC
Confidence 2356789999999999999999988776421 122 2235678888888888
Q ss_pred hhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCC-CCCCCccccchhhhhHHHHHHH-hcCCHHH
Q 000172 962 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANF-PSGQNIKSGHFHENLHSCLTAL-REGDSEE 1039 (1935)
Q Consensus 962 ~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~-~~~~~~~~~~f~~~L~~aLlAl-~~~d~~~ 1039 (1935)
.+......+.+... +....-....+-=+.|+++...... ... -.+-.++...|.. .|.+. +.|+.++
T Consensus 376 ~~~A~~vf~~m~~~------d~~t~n~lI~~y~~~G~~~~A~~lf-~~M~~~g~~Pd~~T~~~----ll~a~~~~g~~~~ 444 (697)
T PLN03081 376 MEDARNVFDRMPRK------NLISWNALIAGYGNHGRGTKAVEMF-ERMIAEGVAPNHVTFLA----VLSACRYSGLSEQ 444 (697)
T ss_pred HHHHHHHHHhCCCC------CeeeHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCCCHHHHHH----HHHHHhcCCcHHH
Confidence 77665554443211 1111111222222344444221110 000 0011233333332 12333 6677777
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHH
Q 000172 1040 FYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLN 1119 (1935)
Q Consensus 1040 f~~~i~~aR~~l~~eLsa~s~ES~~r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 1119 (1935)
..+..+.....- .+ .-..+.|...-+.+.|...+.|-.++++ .. |..++ .
T Consensus 445 a~~~f~~m~~~~--g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~----~~----------------~~~p~-------~ 494 (697)
T PLN03081 445 GWEIFQSMSENH--RI-KPRAMHYACMIELLGREGLLDEAYAMIR----RA----------------PFKPT-------V 494 (697)
T ss_pred HHHHHHHHHHhc--CC-CCCccchHhHHHHHHhcCCHHHHHHHHH----HC----------------CCCCC-------H
Confidence 777666543210 00 0122334443344444444444444432 00 11111 1
Q ss_pred HHHHHHHHhhhc--chhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 000172 1120 TEWSSILKRTQL--HMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKC 1185 (1935)
Q Consensus 1120 ~~W~~rl~~~q~--~~e~~epiL~~R~~vl~il~~~e~~~~~wl~~A~laRKag~~~~A~~aL~~l~~ 1185 (1935)
.+|...+..+.. +++.-+. ..+ .+++ +.+.. ..++.-.+++.-++|++..|.+...+++.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~--~~~-~l~~-~~p~~--~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRL--AAE-KLYG-MGPEK--LNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHH--HHH-HHhC-CCCCC--CcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 358888877643 3332221 111 1222 12322 23345556778899999999999877764
No 62
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=59.41 E-value=11 Score=42.65 Aligned_cols=48 Identities=27% Similarity=0.322 Sum_probs=34.8
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccchhhHHHHHHHHHHHhc
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGVFRRCCEKTLSVMRT 1830 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~GveG~Fr~~~~~t~~~LR~ 1830 (1935)
+|=||+|||++ +|++.=||||.+-.-. .| ...|.+++-++.++...|+
T Consensus 142 rDlkP~NIll~--~~~~~liDFG~a~~~~----~~------------------~~~~~~~~~~~~~~~~~~~ 189 (190)
T cd05145 142 GDLSEYNILYH--DGKPYIIDVSQAVELD----HP------------------NALEFLRRDIRNINRFFRK 189 (190)
T ss_pred CCCChhhEEEE--CCCEEEEEcccceecC----CC------------------CHHHHHHHHHHHHHHHhhc
Confidence 79999999998 8999999999865321 11 3355667777766666554
No 63
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=58.29 E-value=25 Score=37.42 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHH
Q 000172 888 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 967 (1935)
Q Consensus 888 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 967 (1935)
....|...|+.++|..+|+..+..+.. + .. .....+++-.++.++|..+....
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------~-------~~----~~~a~i~lastlr~LG~~deA~~ 59 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLS----------------G-------AD----RRRALIQLASTLRNLGRYDEALA 59 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC----------------c-------hH----HHHHHHHHHHHHHHcCCHHHHHH
Confidence 345688899999999999999884321 0 00 22356788889999998777655
Q ss_pred Hhhhc
Q 000172 968 YCKGL 972 (1935)
Q Consensus 968 y~~gL 972 (1935)
..+..
T Consensus 60 ~L~~~ 64 (120)
T PF12688_consen 60 LLEEA 64 (120)
T ss_pred HHHHH
Confidence 55443
No 64
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=56.89 E-value=2.3e+02 Score=36.29 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcch-HHHH-HHHHHhhCCCchhhhhhhhc-----
Q 000172 810 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPR-HIEI-LVSAVTQINEPDSLYGIIQS----- 882 (1935)
Q Consensus 810 Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~-~~e~-L~~IY~~IdEPDa~yGI~~~----- 882 (1935)
+.+..+|++|.+-|.|.+|..|++...+.. | ... ..+. +.+|+-+-+++|.+.-....
T Consensus 119 ~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p-------~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~ 183 (409)
T TIGR00540 119 LNLIKAAEAAQQRGDEARANQHLEEAAELA--------G-------NDNILVEIARTRILLAQNELHAARHGVDKLLEMA 183 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------C-------cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 568899999999999999999999764321 1 111 1333 46777777777766655431
Q ss_pred c----chhhHHHHHHhhCCHHHHHHHHHHHHh
Q 000172 883 H----KLSSQIVTLEHEGNWSKALEYYELQVR 910 (1935)
Q Consensus 883 ~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~ 910 (1935)
+ .+.....-|...|+|++|+..++...+
T Consensus 184 P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 184 PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 145677788888888888888877765
No 65
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.24 E-value=17 Score=33.53 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=40.9
Q ss_pred hhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHhhhcc
Q 000172 894 HEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLT 973 (1935)
Q Consensus 894 ~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gL~ 973 (1935)
..|+|++|+..|+..++..|. +.+...++.+|+-..|.++....+++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD------------------------------NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT------------------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 579999999999999986543 22346789999999999999888777665
Q ss_pred ccc
Q 000172 974 SWK 976 (1935)
Q Consensus 974 ~s~ 976 (1935)
...
T Consensus 53 ~~~ 55 (68)
T PF14559_consen 53 KQD 55 (68)
T ss_dssp GGG
T ss_pred HHC
Confidence 443
No 66
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=53.75 E-value=7.8 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
||=+|+|||++ +|++.=||||.+-.
T Consensus 142 rDlkP~NIli~--~~~v~LiDFG~a~~ 166 (190)
T cd05147 142 ADLSEYNLLYH--DGKLYIIDVSQSVE 166 (190)
T ss_pred CCCCHHHEEEE--CCcEEEEEcccccc
Confidence 89999999998 59999999998643
No 67
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=53.06 E-value=11 Score=49.29 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1745 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1745 S~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
+||+=|+---=|==-|-.|+|||||+ +|++=-.|||.|-+
T Consensus 739 tcAiesVHkmGFIHRDiKPDNILIDr-dGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 739 TCAIESVHKMGFIHRDIKPDNILIDR-DGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHHhccceecccCccceEEcc-CCceeeeecccccc
Confidence 35555542211222477899999997 99999999999854
No 68
>PLN03077 Protein ECB2; Provisional
Probab=52.73 E-value=8.8e+02 Score=34.33 Aligned_cols=137 Identities=12% Similarity=0.013 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+-.+-.+||.+..|...++.-. .+..-....|+..|.+-++++.+..+...
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~-----------------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMP-----------------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCC-----------------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 3445566678888888877665310 11123456788888888888777666531
Q ss_pred -cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhch
Q 000172 883 -HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 961 (1935)
Q Consensus 883 -~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 961 (1935)
.+....+..+.+.|+++.|.+.++.....+ ..|+ ......++.++-..|.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g---------------~~~d--------------~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTG---------------FAVD--------------VSVCNSLIQMYLSLGS 338 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhC---------------Cccc--------------hHHHHHHHHHHHhcCC
Confidence 234577778888888888888877765532 1232 1234567888888888
Q ss_pred hhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCC
Q 000172 962 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 1000 (1935)
Q Consensus 962 ~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD 1000 (1935)
++....+.+.+... +....-....+--+.|+++
T Consensus 339 ~~~A~~vf~~m~~~------d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 339 WGEAEKVFSRMETK------DAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHHHHhhCCCC------CeeeHHHHHHHHHhCCCHH
Confidence 77776655554321 1122223345555566665
No 69
>KOG3365 consensus NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit [Energy production and conversion]
Probab=51.63 E-value=8.9 Score=40.88 Aligned_cols=38 Identities=21% Similarity=0.521 Sum_probs=32.9
Q ss_pred HHHHHHHhhhcCCCCCCccCHHHHHHHHHHHhcCchhhhhhCcccccC
Q 000172 1887 RALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPERFCLMFPGWGAW 1934 (1935)
Q Consensus 1887 ~~l~rv~~KL~g~~~~~~lsV~~qV~~LI~~Atd~~NLa~m~~gW~Pw 1934 (1935)
..++.++++|.| |||.++|.||-+.=|+.+|-..|.||
T Consensus 92 ~d~K~ledql~g----------GqIEE~i~qa~~el~m~~k~~~wk~w 129 (145)
T KOG3365|consen 92 PDVKKLEDQLQG----------GQIEEVIEQAEAELNMGRKMFEWKPW 129 (145)
T ss_pred hHHHHHHHHhcC----------CchHHHHHHHHHHHHHHhhhhccccc
Confidence 346667777765 68999999999999999999999999
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=51.39 E-value=4e+02 Score=35.39 Aligned_cols=94 Identities=10% Similarity=-0.005 Sum_probs=55.1
Q ss_pred ccchh-HHHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCC
Q 000172 1150 LSCKD-FTMQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNE 1228 (1935)
Q Consensus 1150 l~~~e-~~~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~ 1228 (1935)
+++.+ .+..+-.+.|.+-.+.|+++.|+...-++-++....+.. .....++.+|..|+ +.. +.....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~---~~~-------~~k~~~ 426 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAE---AYE-------ELKKYE 426 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHH---HHH-------Hhcccc
Confidence 34444 566777888999999999999998876554433222111 12446888887662 221 111222
Q ss_pred chhHHHHHHhHhHHHhhcCChHHHHHhh
Q 000172 1229 EAPDVYRLVGKWLAESRSSNSRIILENY 1256 (1935)
Q Consensus 1229 ~~a~ll~llG~wlaet~~e~~~~I~~~Y 1256 (1935)
....++.-.+.|+ .++-.+..+++-.|
T Consensus 427 ~a~~l~~~~~~i~-~~~g~~~~~~~~~~ 453 (508)
T KOG1840|consen 427 EAEQLFEEAKDIM-KLCGPDHPDVTYTY 453 (508)
T ss_pred hHHHHHHHHHHHH-HHhCCCCCchHHHH
Confidence 3456777777888 55544433343333
No 71
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=50.90 E-value=13 Score=43.74 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccCC
Q 000172 1745 SVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLML 1790 (1935)
Q Consensus 1745 S~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~l 1790 (1935)
.+.-|+++=+++.=.|||..|||..+ +|+++-||=|+||.....|
T Consensus 134 ~l~riaVfDi~inNaDRk~GhiL~~~-dg~l~~IDHGl~f~~~~kl 178 (253)
T TIGR03843 134 QLRRMAVFDALVNNADRKGGHVLPGP-DGRVWGVDHGVCFHVEPKL 178 (253)
T ss_pred HHhhhhhheeeeecCCCCCCcEeEcC-CCcEEEecCceecCCCCcc
Confidence 45667889999999999999999997 8999999999999865333
No 72
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=49.82 E-value=51 Score=34.60 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhHhH-HHhh-cCChHHHHHhhhchhcc
Q 000172 1200 LLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWL-AESR-SSNSRIILENYLKPAVS 1262 (1935)
Q Consensus 1200 ~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~wl-aet~-~e~~~~I~~~Y~~~Av~ 1262 (1935)
.|+-+|..|+|..|+.++++++...........++.+-|.-. ..+. .++| ++-..|+..+|+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~-d~k~~yLl~sve 65 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENP-DVKFRYLLGSVE 65 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCc-hHHHHHHHHhHH
Confidence 478899999999999999999887655544445666666643 3333 3444 456667766654
No 73
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=49.06 E-value=11 Score=45.61 Aligned_cols=57 Identities=33% Similarity=0.494 Sum_probs=38.6
Q ss_pred HHHHHHhhcccC----CCCCCeEEEecCCCcEEEeecchhhc-cccC--C-CCCCCCCccccHHHHhhcc
Q 000172 1748 ASSMVGYIVGLG----DRHAMNILIDQATAEVVHIDLGVAFE-QGLM--L-KTPERVPFRLTRDIIDGMG 1809 (1935)
Q Consensus 1748 ~~S~vgYILGLG----DRH~~NILid~~TG~vvHIDfg~~F~-~g~~--l-~~pE~VPFRLTrniv~~mG 1809 (1935)
+.+.+.|+=+++ |--|+|||||+ +|.+=-+|||++=. .|.+ + -+||- |.|+++..=|
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD~-~G~iKitDFGFAK~v~~rT~TlCGTPeY----LAPEii~sk~ 217 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLDQ-NGHIKITDFGFAKRVSGRTWTLCGTPEY----LAPEIIQSKG 217 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeecc-CCcEEEEeccceEEecCcEEEecCCccc----cChHHhhcCC
Confidence 456677775554 78999999997 99999999998743 2321 1 24543 3466665433
No 74
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=47.90 E-value=1.5e+03 Score=35.70 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhCCCchhhhhhhhccc--hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCC
Q 000172 859 HIEILVSAVTQINEPDSLYGIIQSHK--LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSP 936 (1935)
Q Consensus 859 ~~e~L~~IY~~IdEPDa~yGI~~~~~--l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 936 (1935)
..+...++|.+|.+-|+++|.+.... .+.....|+..|.|.+++..|+........ + ..|.
T Consensus 1125 ~~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~~e~~~~k~~~-------~-----~~~~----- 1187 (2105)
T COG5032 1125 DALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQLYEVAQRKARS-------K-----EFPF----- 1187 (2105)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhccc-------c-----cCch-----
Confidence 34667889999999999999998654 456777999999999999999998765432 1 1332
Q ss_pred CcchhhhhhccchhHHHHHHHhhchhhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCC
Q 000172 937 STSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 1001 (1935)
Q Consensus 937 ~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~ 1001 (1935)
..+ +.. .+.+.+.|+..+-+ ++. .+ .-.....++..+.+|+...|-.
T Consensus 1188 -s~~--~~~--~~~~~~~~a~~~~~--~~~---~~--------~~~~~~~~i~~~~~w~~a~~~~ 1234 (2105)
T COG5032 1188 -SLQ--YLY--WHINDIDCADKLQS--VLA---EL--------SLVTGISELLLEESWRRALFSN 1234 (2105)
T ss_pred -hhH--HHH--HcccchhhHhhhhh--hhh---hc--------ccccchhhhccchhHHHHHhhh
Confidence 111 122 35667888776643 111 11 1112455677788888888874
No 75
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=47.52 E-value=26 Score=28.77 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=20.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 886 SSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 886 ~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
......|.+.|+|++|..+|+..+.-
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567899999999999999996643
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=46.43 E-value=27 Score=42.07 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc----c---
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H--- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~----~--- 883 (1935)
++..++.. ..=+-|.+|+-+.|...++. ..+..+..++.+|.+.++.+.+..+... .
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD---------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccc-cccccccccccccccccccc---------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 44455555 56688888888887643221 1244556677788888888887777542 1
Q ss_pred -c---hhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 -K---LSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 -~---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
+ +......|++.|++++|+.+|+..+...|+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 1 235777899999999999999999996553
No 77
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=44.56 E-value=17 Score=39.78 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=25.1
Q ss_pred HhhcccCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1753 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1753 gYILGLGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
.+.+.=||=||+||+++ .|++.-||||.+-
T Consensus 106 ~~~~~HgD~~~~Nil~~--~~~~~liDf~~a~ 135 (170)
T cd05151 106 DLVPCHNDLLPGNFLLD--DGRLWLIDWEYAG 135 (170)
T ss_pred CceeecCCCCcCcEEEE--CCeEEEEeccccc
Confidence 45556699999999999 6889999999753
No 78
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=42.14 E-value=1e+02 Score=35.50 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=25.6
Q ss_pred CCCCCCeEEEecCCCcE--EEeecchhhcc
Q 000172 1759 GDRHAMNILIDQATAEV--VHIDLGVAFEQ 1786 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~v--vHIDfg~~F~~ 1786 (1935)
||-.-+||++....+++ +-||||..+.+
T Consensus 137 GDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 137 GDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred ccccccceEEecCCCcCceEEEeecchhcc
Confidence 89999999999999998 99999988754
No 79
>PRK14879 serine/threonine protein kinase; Provisional
Probab=41.95 E-value=40 Score=38.35 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.8
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchh
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVA 1783 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~ 1783 (1935)
=||-+|+|||++ .|.+.-||||.+
T Consensus 118 H~Dl~p~Nil~~--~~~~~liDf~~a 141 (211)
T PRK14879 118 HGDLTTSNMILS--GGKIYLIDFGLA 141 (211)
T ss_pred cCCCCcccEEEE--CCCEEEEECCcc
Confidence 389999999999 799999999975
No 80
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=41.93 E-value=4.5e+02 Score=35.59 Aligned_cols=218 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhh---------c
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---------S 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~---------~ 882 (1935)
+..+|..-..-|-|..|+-+++..++. ........-.+-.+|...+++|.+..... .
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l--------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 399 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIEL--------------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Q ss_pred cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 883 HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 883 ~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
........-|-..|++++|+.+|+..+..+|. +...+..+-.++..+|..
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------------------------------~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------------------------------FIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------------------------------CHHHHHHHHHHHHHCCCH
Q ss_pred hHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCcccc--CCCCCCCCCccccchhhhhHHHHHHHh-cCCHHH
Q 000172 963 HVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYL--GANFPSGQNIKSGHFHENLHSCLTALR-EGDSEE 1039 (1935)
Q Consensus 963 ~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~--~~~~~~~~~~~~~~f~~~L~~aLlAl~-~~d~~~ 1039 (1935)
+....+.+...... ...+...-....+...+|+|+.-.... .....+.........-..+..++.... .|++++
T Consensus 450 ~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 450 ASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHH
Q 000172 1040 FYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWD 1084 (1935)
Q Consensus 1040 f~~~i~~aR~~l~~eLsa~s~ES~~r~Y~~lvrLq~L~ELEei~e 1084 (1935)
+...++++.. ...++.......-.-+..+.+.++++.
T Consensus 527 A~~~~~kAl~--------l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 527 AENLCEKALI--------IDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHh--------cCCCcHHHHHHHHHHHHHccCHHHHHH
No 81
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.32 E-value=1.5e+02 Score=36.88 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHhcCC----hHHHHHHHHHhhhccc
Q 000172 1116 SWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQIL---SCKDFTMQHLLESASTLRKGFR----LSQAAAALHELKCSIF 1188 (1935)
Q Consensus 1116 ~~l~~~W~~rl~~~q~~~e~~epiL~~R~~vl~il---~~~e~~~~~wl~~A~laRKag~----~~~A~~aL~~l~~l~~ 1188 (1935)
+.+.+.|++.+..-..++.+|..+|.+++.=+.-. .+++...+++-........... .......+..
T Consensus 82 ~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~------ 155 (321)
T PF08424_consen 82 EKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLY------ 155 (321)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH------
Confidence 55778899999887788999999999986522211 1222222222111111111000 0000000000
Q ss_pred cccccCCCchHHHHHHHHCCChHHHHHHHHHHHhh
Q 000172 1189 HMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISEN 1223 (1935)
Q Consensus 1189 ~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~ 1223 (1935)
-+-..+..+++.|..+.|+.+.|.++.-
T Consensus 156 -------v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 156 -------VFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred -------HHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 0112689999999999999999988763
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=40.10 E-value=59 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=38.0
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc-hhhH
Q 000172 886 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG-CMHV 964 (1935)
Q Consensus 886 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG-~~~~ 964 (1935)
......|.++|+|++|+.+|+..++.+|+ +.....++-.|+..+| .+..
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------------------------------~~~~~~~~g~~~~~~~~~~~~ 56 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDPN------------------------------NAEAYYNLGLAYMKLGKDYEE 56 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHSTT------------------------------HHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------------------------CHHHHHHHHHHHHHhCccHHH
Confidence 45667889999999999999999996543 2234567777888888 5554
Q ss_pred HH
Q 000172 965 LD 966 (1935)
Q Consensus 965 L~ 966 (1935)
..
T Consensus 57 A~ 58 (69)
T PF13414_consen 57 AI 58 (69)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 83
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=39.17 E-value=22 Score=40.13 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.8
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchh
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVA 1783 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~ 1783 (1935)
=||-||+||+++ .|++.-||||.+
T Consensus 113 H~Dl~~~Nil~~--~~~~~liDfg~a 136 (199)
T TIGR03724 113 HGDLTTSNIIVR--DDKLYLIDFGLG 136 (199)
T ss_pred cCCCCcceEEEE--CCcEEEEECCCC
Confidence 489999999999 799999999964
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=38.89 E-value=1e+03 Score=32.30 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCccHHHHHHHHHhhhcccc
Q 000172 1363 DNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDEVQS 1417 (1935)
Q Consensus 1363 ~~fl~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~~~~v~~~~~~~~~~vp~ 1417 (1935)
...-.+||.-|=+++.+..+..+. .+.--.+-|..+..++....+++--.-+|.
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~-~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLC-KYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchh-HHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 344467999999999998887665 565567777777777767767766666663
No 85
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=38.32 E-value=20 Score=47.30 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=31.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEE--cCCCCceeeecCCC
Q 000172 1613 DDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVP--FTPSAGILEWVDGT 1666 (1935)
Q Consensus 1613 dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViP--Ls~~~GLIE~v~~t 1666 (1935)
=|+|+++.-+.-|+ ..++.++ .++.|+|.+ .+++.=.+||++|+
T Consensus 206 lDy~~EA~n~~~~~---~nf~~~~-------~v~VP~V~we~t~~~VLtmE~i~Gi 251 (517)
T COG0661 206 LDYRREAANAERFR---ENFKDDP-------DVYVPKVYWEYTTRRVLTMEWIDGI 251 (517)
T ss_pred hCHHHHHHHHHHHH---HHcCCCC-------CeEeceeehhccCCcEEEEEeeCCE
Confidence 37888877766553 3344333 688999996 58888899999985
No 86
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=37.40 E-value=3.5e+02 Score=30.12 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.....-+-|..|+-+.+..... .| ......-.+..+|...+++|.+...... +
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEH--------DP------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------Cc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 446788888889999999999875432 11 1133445677788888888877666531 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVR 910 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~ 910 (1935)
.......-|...|++++|+.+|+..++
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 122445667788888888888888775
No 87
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=36.73 E-value=15 Score=29.27 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=18.5
Q ss_pred CCCCCchHHHHHHHHHhhhccc
Q 000172 1 MLQDPDYRVRLFLARRIGVLFQ 22 (1935)
Q Consensus 1 ~l~d~~~~vr~~~a~~~~~lf~ 22 (1935)
+|+|++.+||.-+|..++.+.+
T Consensus 8 ~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 8 LLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHh
Confidence 3689999999999999998765
No 88
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=34.85 E-value=29 Score=39.42 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.9
Q ss_pred cccCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000172 1756 VGLGDRHAMNILIDQATAEVVHIDLGVAFEQG 1787 (1935)
Q Consensus 1756 LGLGDRH~~NILid~~TG~vvHIDfg~~F~~g 1787 (1935)
+-=||=+|+||+++. +|++.=+|||.++..+
T Consensus 146 i~H~Dl~p~Nill~~-~~~~~liDfg~~~~~~ 176 (198)
T cd05144 146 IIHGDLSEFNILVDD-DEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCcCCCCcccEEEcC-CCcEEEEECCccccCC
Confidence 334699999999996 9999999999986543
No 89
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=34.72 E-value=24 Score=41.75 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.3
Q ss_pred CCCCCCeEEEecCCCcEEEeecchh
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVA 1783 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~ 1783 (1935)
||=||+||+++. .| +.=||||..
T Consensus 159 ~Dikp~Nili~~-~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSK-NG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeC-CC-EEEEECCCc
Confidence 799999999986 77 999999853
No 90
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=34.44 E-value=1.4e+02 Score=35.95 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhh--------cc
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ--------SH 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~--------~~ 883 (1935)
+...|....+.|-+..|+-+.+..+... | ..++....|.-++-..++.+.+--+.. .+
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~--------P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~ 214 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELD--------P------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP 214 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH---------T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence 3467888899999999999999876532 1 224556667777777777775333332 12
Q ss_pred c-hhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 K-LSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ~-l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
. ......-|...|+.++|+.+|+..+...|
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhccccccccccccccccccccc
Confidence 2 35678899999999999999999987544
No 91
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=34.32 E-value=22 Score=47.12 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.1
Q ss_pred cCCCCCCeEEEecCCC----cEEEeecchh
Q 000172 1758 LGDRHAMNILIDQATA----EVVHIDLGVA 1783 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG----~vvHIDfg~~ 1783 (1935)
=+|=||+||+++. +| +++-+|||.+
T Consensus 283 HaDpHPGNIlv~~-~g~~~~~i~llDFGiv 311 (537)
T PRK04750 283 HADMHPGNIFVSY-DPPENPRYIALDFGIV 311 (537)
T ss_pred eCCCChHHeEEec-CCCCCCeEEEEecceE
Confidence 4899999999996 55 9999999986
No 92
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=34.30 E-value=72 Score=29.14 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHH
Q 000172 888 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 967 (1935)
Q Consensus 888 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 967 (1935)
+...|...|+|++|...|+..++..|. +.+...++-+|+...|.++....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~------------------------------~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD------------------------------NPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT------------------------------HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Confidence 456788999999999999999885432 23346778889999998776655
Q ss_pred Hhh
Q 000172 968 YCK 970 (1935)
Q Consensus 968 y~~ 970 (1935)
+.+
T Consensus 53 ~~~ 55 (65)
T PF13432_consen 53 YYE 55 (65)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 93
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=34.01 E-value=3.7e+02 Score=37.88 Aligned_cols=107 Identities=24% Similarity=0.284 Sum_probs=74.5
Q ss_pred CCcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccC
Q 000172 1600 DGHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRN 1679 (1935)
Q Consensus 1600 dGk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~ 1679 (1935)
||+ +.+.|| .+++-|+...+++..+|.-.... .+++++|+.-+ +-|-.|||++..--
T Consensus 112 ~g~--kivYKP--r~l~~d~~f~~~l~~ln~~~~~~--------~~~~~~~l~~~-~ygw~EfI~~~~c~---------- 168 (825)
T cd04792 112 SGL--KLVYKP--RSLSVDALFQELLEWLNSFLGAL--------PLRTPKVLDRG-DYGWEEFIEHQPCQ---------- 168 (825)
T ss_pred CCC--EEEECC--CCchHHHHHHHHHHHHHhcCCcc--------ccccceeeecC-CcceEEeecCCCCC----------
Confidence 564 456786 69999999999999988753322 24788888664 56999998852100
Q ss_pred CCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000172 1680 GGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRLAYTRSVAASSMVGYIVGLG 1759 (1935)
Q Consensus 1680 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~~FtrS~A~~S~vgYILGLG 1759 (1935)
+ +.+ -.+|=+-++.+-.+.|+||-.
T Consensus 169 ----------------------~---~~e------------------------------~~~fY~r~G~llal~y~L~~t 193 (825)
T cd04792 169 ----------------------S---KEE------------------------------VERYYYRLGGLLALLYLLNAT 193 (825)
T ss_pred ----------------------C---HHH------------------------------HHHHHHHHHHHHHHHHHcCCc
Confidence 0 000 013455678888999999999
Q ss_pred CCCCCeEEEecCCCcEEEeecchhhcc
Q 000172 1760 DRHAMNILIDQATAEVVHIDLGVAFEQ 1786 (1935)
Q Consensus 1760 DRH~~NILid~~TG~vvHIDfg~~F~~ 1786 (1935)
|=|-+||.-+ -+..|=||+--+|..
T Consensus 194 D~H~ENiIA~--g~~PvlIDlETlf~~ 218 (825)
T cd04792 194 DLHFENIIAS--GEYPVLIDLETLFHP 218 (825)
T ss_pred ccchhhheee--CCCceEEeeHHhcCC
Confidence 9999999544 466788888766654
No 94
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=33.21 E-value=50 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.4
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchh
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVA 1783 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~ 1783 (1935)
-||=||+||+++. +|+++=+|||.+
T Consensus 280 H~D~hPgNilv~~-~g~i~liDfG~~ 304 (437)
T TIGR01982 280 HADLHPGNIFVLK-DGKIIALDFGIV 304 (437)
T ss_pred eCCCCcccEEECC-CCcEEEEeCCCe
Confidence 3799999999975 899999999986
No 95
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=6.4e+02 Score=32.93 Aligned_cols=160 Identities=22% Similarity=0.300 Sum_probs=95.9
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhHhHHHhhcCChHHHHHhhhchhcccccccccchhhhHHHHh
Q 000172 1200 LLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGKWLAESRSSNSRIILENYLKPAVSFSEDQRTTDKKSIERQC 1279 (1935)
Q Consensus 1200 ~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~wlaet~~e~~~~I~~~Y~~~Av~~~e~~~~~~~~~~~~~~ 1279 (1935)
-|++.=..++|+.|+..-|.-++ .++....+..++||=--|-. +....++.|=. ||++.. .--
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmK--Nt~AAi~sYRr-Avdi~p-----------~Dy 398 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMK--NTHAAIESYRR-AVDINP-----------RDY 398 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhc--ccHHHHHHHHH-HHhcCc-----------hhH
Confidence 48888889999999987663332 24556678889998544433 45556677755 776531 124
Q ss_pred hhhhhHHHHHHHHHhhHHHHhccHHHHHHHHHHhhhHHHHHHHHHHhhhcccCccchhhHHHHHHHHHHhhcHHHHHHhH
Q 000172 1280 QTHFHLAHYADALFKSYEERLASNEWQAAMRLRKHKTIELEALIKRLKSSTKGEKTDYSIKIQELQKQLAMDREEAQKLL 1359 (1935)
Q Consensus 1280 ~~~~~lA~f~D~~~q~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~at~~~~~~y~~~~~~l~~~~~lD~~e~~~l~ 1359 (1935)
++||.+|+=++-.---. -..--||++..++.+..+-...+=+.| ++
T Consensus 399 RAWYGLGQaYeim~Mh~---YaLyYfqkA~~~kPnDsRlw~aLG~CY-----------------------------~k-- 444 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHF---YALYYFQKALELKPNDSRLWVALGECY-----------------------------EK-- 444 (559)
T ss_pred HHHhhhhHHHHHhcchH---HHHHHHHHHHhcCCCchHHHHHHHHHH-----------------------------HH--
Confidence 78888875443321100 012223443333222222111111111 11
Q ss_pred HhHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhcCccHHHHHHHHHhhhc
Q 000172 1360 DDRDNFLGLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLSSRQNVIKNMVDTIDE 1414 (1935)
Q Consensus 1360 ~~r~~fl~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~~~~~v~~~~~~~~~~ 1414 (1935)
..-+..||+||-+++..||.... ...|+-.|.=+.++.++....+.+++..
T Consensus 445 ---l~~~~eAiKCykrai~~~dte~~-~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 445 ---LNRLEEAIKCYKRAILLGDTEGS-ALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred ---hccHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11235799999999999997543 5788988888888888888888877764
No 96
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=33.15 E-value=29 Score=38.71 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=23.0
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
=||=||+||+++ +|.+.=||||.+-.
T Consensus 138 H~Dl~p~Nili~--~~~~~liDfg~a~~ 163 (187)
T cd05119 138 HGDLSEYNILVD--DGKVYIIDVPQAVE 163 (187)
T ss_pred cCCCChhhEEEE--CCcEEEEECccccc
Confidence 479999999999 89999999998743
No 97
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=33.03 E-value=29 Score=41.45 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=41.3
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhc------ccc-CCCCCCCCCccccHHHH--------hhccccccc---hhhH
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAFE------QGL-MLKTPERVPFRLTRDII--------DGMGVTGVE---GVFR 1818 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F~------~g~-~l~~pE~VPFRLTrniv--------~~mG~~Gve---G~Fr 1818 (1935)
-|--|+|||+|+ +|.|=--|||.|=. +.. .--.|-..|=|++|+=- =-+|++-+| |.|.
T Consensus 192 RDvKPSNILldr-~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fP 268 (361)
T KOG1006|consen 192 RDVKPSNILLDR-HGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFP 268 (361)
T ss_pred ccCChhheEEec-CCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCC
Confidence 477899999997 99999999999822 111 12357778888888642 346666555 6664
No 98
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=32.60 E-value=37 Score=27.01 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.2
Q ss_pred HHHHHHHhhccCCccccchHHHHHHHHhc
Q 000172 573 VLKILKKYLMDDSVQIVDMTSQTLRGILS 601 (1935)
Q Consensus 573 iL~~L~~~L~~~~~~~~~~a~~~L~~ils 601 (1935)
|+..+.+++.|++.+|+..|..||..|..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46678889999999999999999998754
No 99
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=32.21 E-value=2.7e+02 Score=28.49 Aligned_cols=98 Identities=8% Similarity=0.032 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhhhccccChHHHHHHhHhHHHHHHHhcCccchhhH-hHHhhhcCCCChHhHHHHhhhhhhhHHHhcCC
Q 000172 102 QRELVNVALDNLSQQLQYTTRWKYLEELLGPILFCWVACGVSLIALV-EIRRLFVSDAEPCNFVQYCCHWLLPALVLHAD 180 (1935)
Q Consensus 102 ~~~l~~~vl~~~~~~~~y~~~~~~~~~~l~~l~~~w~~~~~sl~~~~-~~~~l~~~~~~~~~f~~~~~~~l~p~l~~~~~ 180 (1935)
+.+++.++++-|-..+.-+-..+=+..++ ++|...|- -.++.+|. +|.+|++.+.-.-.=.++..++
T Consensus 3 ~~~~~~~~~~~i~~~~~~~~~~~~lA~~~----------~~S~~~l~r~f~~~~g~--s~~~~i~~~Rl~~a~~~L~~~~ 70 (107)
T PRK10219 3 HQKIIQTLIAWIDEHIDQPLNIDVVAKKS----------GYSKWYLQRMFRTVTHQ--TLGDYIRQRRLLLAAVELRTTE 70 (107)
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHH----------CCCHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHHccC
Confidence 34555555555554443332222222222 24444442 22334444 6777777666554556666554
Q ss_pred ccchHHHHHHhCCcHHHHHhhhchhHHHhhhh
Q 000172 181 TSNLNWMAKIAREPLADLVKNHFVPIFSISMA 212 (1935)
Q Consensus 181 ~~~~~~~a~~~~~~~~~l~~~~f~~i~~~~~~ 212 (1935)
..+..||..+|-+=..=+...|-+.+|..|.
T Consensus 71 -~~i~~iA~~~Gf~~~s~f~~~Fk~~~G~tP~ 101 (107)
T PRK10219 71 -RPIFDIAMDLGYVSQQTFSRVFRRQFDRTPS 101 (107)
T ss_pred -CCHHHHHHHHCCCCHHHHHHHHHHHHCcCHH
Confidence 4689999999988888888888888887775
No 100
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=31.51 E-value=31 Score=39.42 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=23.4
Q ss_pred HHhhcccCCCCCCeEEEecCCCcEEEeecchh
Q 000172 1752 VGYIVGLGDRHAMNILIDQATAEVVHIDLGVA 1783 (1935)
Q Consensus 1752 vgYILGLGDRH~~NILid~~TG~vvHIDfg~~ 1783 (1935)
....+.=||=||+|||++...|+|--|||+.+
T Consensus 164 ~~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 164 LPPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp SCEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CCcEEEEeccccccceeeeccceeEEEecccc
Confidence 56778889999999999976788879999875
No 101
>smart00090 RIO RIO-like kinase.
Probab=31.31 E-value=34 Score=40.52 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhccc
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAFEQG 1787 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F~~g 1787 (1935)
=||=+|+||+++ +|++.=||||.+...+
T Consensus 172 H~Dikp~NIli~--~~~i~LiDFg~a~~~~ 199 (237)
T smart00090 172 HGDLSEYNILVH--DGKVVIIDVSQSVELD 199 (237)
T ss_pred eCCCChhhEEEE--CCCEEEEEChhhhccC
Confidence 479999999999 8999999999877544
No 102
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=31.28 E-value=4.6e+02 Score=29.11 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc----------
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------- 882 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~---------- 882 (1935)
..+|.....-|-|..|+-+.+...... + ..+...-.+..+|...+++|.+.-....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 134 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLN--------P------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP 134 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--------C------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 457888888899999999988764321 1 1123344566677777777776555431
Q ss_pred -cchhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 883 -HKLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 883 -~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........-|...|++++|..+|+..++..
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 012235667889999999999999988743
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=30.79 E-value=2.9e+02 Score=27.69 Aligned_cols=84 Identities=18% Similarity=0.104 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHh
Q 000172 1159 HLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVG 1238 (1935)
Q Consensus 1159 ~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG 1238 (1935)
.+.+.+....+.|++..|...+.++....+.........-..+.++...|+...|+..++.++...+.+...+.++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45666777888999999999887764432210000000122689999999999999999988876554444455565555
Q ss_pred HhHH
Q 000172 1239 KWLA 1242 (1935)
Q Consensus 1239 ~wla 1242 (1935)
.-+.
T Consensus 84 ~~~~ 87 (119)
T TIGR02795 84 MSLQ 87 (119)
T ss_pred HHHH
Confidence 5444
No 104
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=30.68 E-value=1.5e+02 Score=26.95 Aligned_cols=60 Identities=18% Similarity=0.014 Sum_probs=41.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1162 ESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1162 ~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
..|...-+.|++..|.+.+.++....+.. .. ..-..+.+++.+|+...|+..++..+...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~-a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN--PE-AWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH--HH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34677888999999999988775432210 00 01126899999999999999888776654
No 105
>PRK09550 mtnK methylthioribose kinase; Reviewed
Probab=29.81 E-value=3.5e+02 Score=34.84 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=24.8
Q ss_pred HhhcccCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1753 GYIVGLGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1753 gYILGLGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
+..|-=||-|++|||+.. +.+.-|||-++|
T Consensus 222 ~~~l~HgDl~~gni~~~~--~~~~viD~E~a~ 251 (401)
T PRK09550 222 AEALLHGDLHTGSIFVTE--EETKVIDPEFAF 251 (401)
T ss_pred CCceeeccCCcccEEeeC--CCcEEEeccccc
Confidence 445888999999999975 469999998665
No 106
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=29.71 E-value=28 Score=39.94 Aligned_cols=45 Identities=36% Similarity=0.501 Sum_probs=29.0
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccc
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGV 1810 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~ 1810 (1935)
||-++.|||++. |+++-||||-+++.. .| ..-.-|.|++-+....
T Consensus 131 GDLs~~NIlv~~--~~~~iIDf~qav~~~----~p-~a~~~l~RDi~ni~~f 175 (188)
T PF01163_consen 131 GDLSEYNILVDD--GKVYIIDFGQAVDSS----HP-NAEELLRRDIENIIRF 175 (188)
T ss_dssp SS-STTSEEEET--TCEEE--GTTEEETT----ST-THHHHHHHHHHHHHHH
T ss_pred cCCChhhEEeec--ceEEEEecCcceecC----Cc-cHHHHHHHHHHHHHHH
Confidence 999999999995 599999999887754 23 2333466666544433
No 107
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=28.19 E-value=2e+02 Score=28.94 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=38.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
.....+...|++++|...|+..++..|+ .|. .......+.+++...|.+....
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~--------------~~~-------------~~~~~~~l~~~~~~~~~~~~A~ 59 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPK--------------STY-------------APNAHYWLGEAYYAQGKYADAA 59 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------ccc-------------cHHHHHHHHHHHHhhccHHHHH
Confidence 4456788899999999999999875432 000 0112455777888888877665
Q ss_pred HHhhh
Q 000172 967 MYCKG 971 (1935)
Q Consensus 967 ~y~~g 971 (1935)
.+.+.
T Consensus 60 ~~~~~ 64 (119)
T TIGR02795 60 KAFLA 64 (119)
T ss_pred HHHHH
Confidence 55543
No 108
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=27.32 E-value=86 Score=24.80 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
....-|.+.|++++|+.+|+..++-+|
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 456689999999999999999998654
No 109
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=27.25 E-value=38 Score=44.83 Aligned_cols=41 Identities=22% Similarity=0.089 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcc
Q 000172 1746 VAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQ 1786 (1935)
Q Consensus 1746 ~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~ 1786 (1935)
.|+-.+=+.=.=.+|-||+|||++..-|.+--+|||..-+.
T Consensus 426 ~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 426 SAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred HHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhC
Confidence 34444444445579999999999767899999999987653
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=25.89 E-value=2.6e+02 Score=35.24 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
..-|..|..-+.|..|+-+.+..+.. .| ..+...-.+-.+|..+++.+.+...... +
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~ 71 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL--------DP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK 71 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 45689999999999999888876542 11 1244566678889999999988887652 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
..-....-|.+.|++++|+.+|+..+..+|
T Consensus 72 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 72 AYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 123466788999999999999999988544
No 111
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=25.58 E-value=93 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=21.8
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.....|.+.|+|++|..+|+..++.+|
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 345678999999999999999998654
No 112
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=25.45 E-value=2e+02 Score=27.82 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=51.1
Q ss_pred cchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhccch--------hhHHHHHHh
Q 000172 823 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKL--------SSQIVTLEH 894 (1935)
Q Consensus 823 ~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~~l--------~~~i~~yE~ 894 (1935)
+.|.+|+.+.|...... |. .......-.|-.+|-+.++.+.++.+.+.... -....-|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~--------~~----~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELD--------PT----NPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHH--------CG----THHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC--------CC----ChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 56889999999876542 10 01233444578999999999999999853111 134677999
Q ss_pred hCCHHHHHHHHHH
Q 000172 895 EGNWSKALEYYEL 907 (1935)
Q Consensus 895 eg~W~kAL~~Yd~ 907 (1935)
.|+|++|+..|+.
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 9999999999875
No 113
>PRK12274 serine/threonine protein kinase; Provisional
Probab=25.33 E-value=52 Score=38.60 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCC-CCCeEEEecCCCcEEEeecchhh
Q 000172 1759 GDR-HAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1759 GDR-H~~NILid~~TG~vvHIDfg~~F 1784 (1935)
+|- .|+|||++. .|++.=||||.+-
T Consensus 115 rDL~kp~NILv~~-~g~i~LIDFG~A~ 140 (218)
T PRK12274 115 NDLAKEANWLVQE-DGSPAVIDFQLAV 140 (218)
T ss_pred CCCCCcceEEEcC-CCCEEEEECCCce
Confidence 787 589999995 8999999999874
No 114
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=25.21 E-value=2.7e+02 Score=25.80 Aligned_cols=59 Identities=12% Similarity=-0.127 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccC
Q 000172 1165 STLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYES 1226 (1935)
Q Consensus 1165 ~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~ 1226 (1935)
.++...++++.|...+.++..+.+.. .......|.++...|+...|+..++..+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45678889999998887776554321 111233799999999999999999888766543
No 115
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=24.94 E-value=50 Score=39.19 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.4
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
=+|-+|+|||++. +|++.=||||.+-
T Consensus 165 HrDlkp~NILv~~-~~~v~LIDfg~~~ 190 (239)
T PRK01723 165 HADLNAHNILLDP-DGKFWLIDFDRGE 190 (239)
T ss_pred CCCCCchhEEEcC-CCCEEEEECCCcc
Confidence 4699999999997 7899999999653
No 116
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.35 E-value=58 Score=37.45 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
||-.++||++. .|.++-||||...
T Consensus 116 GDLTtsNiIl~--~~~i~~IDfGLg~ 139 (204)
T COG3642 116 GDLTTSNIILS--GGRIYFIDFGLGE 139 (204)
T ss_pred CCCccceEEEe--CCcEEEEECCccc
Confidence 89999999998 5669999999865
No 117
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=24.25 E-value=72 Score=29.29 Aligned_cols=55 Identities=16% Similarity=-0.037 Sum_probs=37.6
Q ss_pred HhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000172 1168 RKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYE 1225 (1935)
Q Consensus 1168 RKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~ 1225 (1935)
-+.|+++.|...+.++....+... . ..-..|+++..+|+.+.|..+++.+....+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~--~-~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP--E-ARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH--H-HHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH--H-HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 467888999888877654333200 0 012379999999999999999987776643
No 118
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=24.22 E-value=83 Score=38.27 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHHhhcccCCCCCCeEEEecC---CCcEEEeecchh
Q 000172 1751 MVGYIVGLGDRHAMNILIDQA---TAEVVHIDLGVA 1783 (1935)
Q Consensus 1751 ~vgYILGLGDRH~~NILid~~---TG~vvHIDfg~~ 1783 (1935)
-...++.=||-|++|||++.. +|.+.-|||.++
T Consensus 176 ~~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya 211 (302)
T cd05156 176 GSPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYA 211 (302)
T ss_pred CCCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCC
Confidence 367889999999999999965 589999999875
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=23.88 E-value=4.5e+02 Score=30.28 Aligned_cols=76 Identities=9% Similarity=-0.088 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHH-HCCC--hHHHHHHHHHHHhhccCCCchhHH
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLR-AQGQ--HEMAINLAKYISENYESNEEAPDV 1233 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW-~~Ge--~~~Ai~~Lq~l~~~~~~~~~~a~l 1233 (1935)
...|...+++....|++..|..++.+...+.+... . -...+|.++| ..|+ ...|+.+++..+..... ..++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~-~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~---~~~a 146 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--E-LYAALATVLYYQAGQHMTPQTREMIDKALALDAN---EVTA 146 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--H-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---ChhH
Confidence 56899999999999999999999988766544210 0 1123788875 5566 48999999877765332 2344
Q ss_pred HHHHh
Q 000172 1234 YRLVG 1238 (1935)
Q Consensus 1234 l~llG 1238 (1935)
+.++|
T Consensus 147 l~~LA 151 (198)
T PRK10370 147 LMLLA 151 (198)
T ss_pred HHHHH
Confidence 44444
No 120
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=23.47 E-value=1.6e+02 Score=27.34 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=38.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHh
Q 000172 890 VTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 969 (1935)
Q Consensus 890 ~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~ 969 (1935)
..|-+.++|++|+.+++..+..+|. +.......-.|+..+|.++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~~a~~~~~~g~~~~A~~~l 52 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD------------------------------DPELWLQRARCLFQLGRYEEALEDL 52 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc------------------------------cchhhHHHHHHHHHhccHHHHHHHH
Confidence 4678899999999999999986543 1223455677889999877765544
Q ss_pred hhc
Q 000172 970 KGL 972 (1935)
Q Consensus 970 ~gL 972 (1935)
+..
T Consensus 53 ~~~ 55 (73)
T PF13371_consen 53 ERA 55 (73)
T ss_pred HHH
Confidence 443
No 121
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=23.41 E-value=1.2e+02 Score=38.65 Aligned_cols=149 Identities=16% Similarity=0.092 Sum_probs=89.1
Q ss_pred cccCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----
Q 000172 808 LSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----- 882 (1935)
Q Consensus 808 L~Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~----- 882 (1935)
+|...-+=+-++.-|+++++.-+----+ .+ +.+ -.+..+..-|+-.+|-.++++-|-...-.+-
T Consensus 249 lDltHYTP~Fa~~iv~~~fkg~in~~~~------~~--d~~---~q~~~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr 317 (831)
T PRK15180 249 DDLTHYTDMFGDAIVAAIFKGVINNTNH------HL--DEG---RQEKQDQIREITLSITKQLADGDIIAASQQLFAALR 317 (831)
T ss_pred CCcccCChHHHHHHHHHHHhcccCCccc------cc--ccc---cCcCCcchhHHHHHHHHHhhccCHHHHHHHHHHHHH
Confidence 5555445555666777777764432111 11 111 1234455667788899999998877655431
Q ss_pred -----cc-hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHH
Q 000172 883 -----HK-LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSL 956 (1935)
Q Consensus 883 -----~~-l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL 956 (1935)
+. +....+-+||+|.++.|++..--. ++..|+ .......+||++
T Consensus 318 ~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~---------~~~~~s---------------------~~~~~~~~~r~~ 367 (831)
T PRK15180 318 NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV---------EKIIGT---------------------TDSTLRCRLRSL 367 (831)
T ss_pred hCCCCchhhHHHHHHHHHhhhHHHHHHHhhch---------hhhhcC---------------------CchHHHHHHHhh
Confidence 11 345667899999999987753111 000111 011246799999
Q ss_pred HhhchhhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCC
Q 000172 957 QQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 1000 (1935)
Q Consensus 957 ~~LG~~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD 1000 (1935)
+.||-|++....+.|+...+- .++++...++-.|-.||-.|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~ei---e~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEI---EDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred hchhhHHHHHHHHHHHhcccc---CChhheeeecccHHHHhHHH
Confidence 999999999888888876542 23455555666666665444
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=23.28 E-value=2.5e+02 Score=30.54 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=37.1
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHH
Q 000172 886 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 965 (1935)
Q Consensus 886 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L 965 (1935)
.....-+...|++++|..+|+..+..+|. +.....++-.|+..+|.....
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l~p~------------------------------~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALMLDAS------------------------------HPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC------------------------------CcHHHHHHHHHHHHcCCHHHH
Confidence 34566788899999999999999885442 122356777789988876554
Q ss_pred H
Q 000172 966 D 966 (1935)
Q Consensus 966 ~ 966 (1935)
.
T Consensus 112 i 112 (144)
T PRK15359 112 R 112 (144)
T ss_pred H
Confidence 3
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.22 E-value=3.1e+02 Score=28.60 Aligned_cols=88 Identities=14% Similarity=0.028 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c-c-
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K- 884 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-~- 884 (1935)
...+|..+...+.|..|+-+++..... .| ..+...-.+-.+|...+++|.+--+... + +
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY--------DP------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh--------CC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 456788889999999999998865331 11 1245566677888888888776655431 1 1
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 885 --LSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 885 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.-....-|...|++++|+.+|+..++.+|
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22456688999999999999999988654
No 124
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=23.20 E-value=57 Score=40.34 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhhccc
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAFEQG 1787 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F~~g 1787 (1935)
-|-+|+||||+. +|.+==+|||.+-..+
T Consensus 144 RDLKPQNlLi~~-~G~lKlaDFGlAra~~ 171 (323)
T KOG0594|consen 144 RDLKPQNLLISS-SGVLKLADFGLARAFS 171 (323)
T ss_pred ccCCcceEEECC-CCcEeeeccchHHHhc
Confidence 578999999998 9999999999875443
No 125
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=22.90 E-value=66 Score=33.45 Aligned_cols=25 Identities=40% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
||=+|+|||++. +|.+.=+|||.+.
T Consensus 113 ~Dl~~~Nil~~~-~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDD-GKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEEC-CcEEEEEeccccc
Confidence 899999999997 8999999999764
No 126
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=21.89 E-value=1.6e+03 Score=27.90 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1159 HLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1159 ~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
.+...+...-+.|++..|...+.++....+.. .......+.++..+|+.+.|+...+.++...
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFA---EGALQQLLEIYQQEKDWQKAIDVAERLEKLG 171 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch---HHHHHHHHHHHHHhchHHHHHHHHHHHHHhc
Confidence 35556777788899999998887765431110 0012236889999999999999988776643
No 127
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=21.82 E-value=65 Score=36.63 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHhhcccCCCCCCeEEEecC-CCcEEEeecchh
Q 000172 1752 VGYIVGLGDRHAMNILIDQA-TAEVVHIDLGVA 1783 (1935)
Q Consensus 1752 vgYILGLGDRH~~NILid~~-TG~vvHIDfg~~ 1783 (1935)
.-..+-=||-||+||+++.. +|.+.=|||+.+
T Consensus 172 ~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 172 SRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CCcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 45677789999999999976 455678999865
No 128
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=21.27 E-value=1.7e+02 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc
Q 000172 885 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 960 (1935)
Q Consensus 885 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 960 (1935)
+.....-|...|+|++|+.+|+..++-... ..+.+..+..++.++|
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~------------------------------~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQ------------------------------LGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH------------------------------TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------HCCCCHHHHHHHHHHH
No 129
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=20.85 E-value=75 Score=37.55 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred CCCCCCeEEEecCCCcEEEeecch
Q 000172 1759 GDRHAMNILIDQATAEVVHIDLGV 1782 (1935)
Q Consensus 1759 GDRH~~NILid~~TG~vvHIDfg~ 1782 (1935)
||=||+|++++ .|++.-|||+.
T Consensus 159 GD~hpgNFlv~--~~~i~iID~~~ 180 (229)
T PF06176_consen 159 GDPHPGNFLVS--NNGIRIIDTQG 180 (229)
T ss_pred CCCCcCcEEEE--CCcEEEEECcc
Confidence 99999999998 57799999974
No 130
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=20.69 E-value=1.1e+02 Score=23.68 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=21.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 888 QIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 888 ~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
....|.+.|+|++|...|+..+...|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 45678889999999999999988654
Done!