Query 000172
Match_columns 1935
No_of_seqs 396 out of 1493
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 22:16:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 100.0 6.9E-58 2.4E-62 586.9 33.5 469 1367-1933 76-692 (696)
2 3ls8_A Phosphatidylinositol 3- 100.0 1.2E-55 4.1E-60 557.6 32.1 423 1367-1854 62-570 (614)
3 1e7u_A Phosphatidylinositol 3- 100.0 9.1E-55 3.1E-59 575.8 32.1 415 1367-1852 445-903 (961)
4 2wxf_A Phosphatidylinositol-4, 100.0 1.6E-54 5.4E-59 573.6 31.7 415 1367-1852 439-887 (940)
5 2y3a_A Phosphatidylinositol-4, 100.0 4.2E-54 1.4E-58 572.8 33.4 415 1367-1852 592-1039(1092)
6 3hhm_A Phosphatidylinositol-4, 100.0 1.9E-52 6.5E-57 552.1 26.8 418 1367-1852 585-1038(1091)
7 1w1n_A Phosphatidylinositol 3- 99.3 5.5E-13 1.9E-17 104.5 1.9 32 1904-1935 2-33 (33)
8 2y4t_A DNAJ homolog subfamily 95.3 4 0.00014 49.4 28.2 87 812-912 29-124 (450)
9 3ieg_A DNAJ homolog subfamily 95.2 4.1 0.00014 47.1 26.5 88 812-913 6-102 (359)
10 1w3b_A UDP-N-acetylglucosamine 94.2 1.5 5.1E-05 52.4 19.9 114 812-969 36-158 (388)
11 1w3b_A UDP-N-acetylglucosamine 94.1 5.4 0.00019 47.5 24.7 112 814-969 4-124 (388)
12 2xpi_A Anaphase-promoting comp 93.6 7.8 0.00027 48.9 26.0 275 812-1239 308-592 (597)
13 2xpi_A Anaphase-promoting comp 92.9 5.3 0.00018 50.5 22.9 88 811-913 119-231 (597)
14 3hym_B Cell division cycle pro 90.3 13 0.00043 42.5 20.4 100 1157-1262 193-298 (330)
15 3hym_B Cell division cycle pro 89.0 34 0.0012 38.7 22.7 78 1158-1241 237-314 (330)
16 2gw1_A Mitochondrial precursor 84.3 52 0.0018 40.0 22.1 63 1159-1224 414-479 (514)
17 2y4t_A DNAJ homolog subfamily 84.0 79 0.0027 37.8 23.3 114 812-969 63-200 (450)
18 4gco_A Protein STI-1; structur 81.0 4.9 0.00017 40.5 9.0 87 813-913 17-112 (126)
19 2ho1_A Type 4 fimbrial biogene 79.7 13 0.00046 40.7 13.0 145 812-1001 40-193 (252)
20 2q7f_A YRRB protein; TPR, prot 78.0 5.2 0.00018 43.6 8.8 149 806-1001 20-177 (243)
21 1fch_A Peroxisomal targeting s 76.7 25 0.00085 40.9 14.7 65 1157-1224 251-315 (368)
22 2q7f_A YRRB protein; TPR, prot 75.9 22 0.00077 38.4 13.2 87 812-912 60-155 (243)
23 3as5_A MAMA; tetratricopeptide 75.6 15 0.00051 37.6 11.1 87 812-912 11-106 (186)
24 3fp2_A TPR repeat-containing p 73.5 1.2E+02 0.0042 37.0 20.7 85 1158-1245 379-476 (537)
25 4eqf_A PEX5-related protein; a 72.9 63 0.0021 37.6 17.0 65 1157-1224 247-311 (365)
26 2vyi_A SGTA protein; chaperone 72.8 18 0.00063 34.5 10.3 89 811-913 14-111 (131)
27 2lni_A Stress-induced-phosphop 72.7 19 0.00065 34.7 10.5 89 811-913 18-115 (133)
28 2vq2_A PILW, putative fimbrial 72.4 22 0.00076 37.7 11.9 85 812-910 11-105 (225)
29 3cv0_A Peroxisome targeting si 72.0 1.1E+02 0.0039 34.2 18.5 65 1157-1224 206-270 (327)
30 3vtx_A MAMA; tetratricopeptide 71.3 28 0.00095 36.3 12.1 88 812-913 8-104 (184)
31 3vtx_A MAMA; tetratricopeptide 69.1 29 0.001 36.1 11.7 114 812-969 42-164 (184)
32 4gyw_A UDP-N-acetylglucosamine 69.1 26 0.00088 46.6 13.5 88 812-913 12-108 (723)
33 3uq3_A Heat shock protein STI1 68.4 36 0.0012 36.9 12.7 85 812-911 8-108 (258)
34 1xi4_A Clathrin heavy chain; a 68.1 2.3E+02 0.0079 40.4 22.3 104 811-970 1051-1158(1630)
35 3upv_A Heat shock protein STI1 67.6 29 0.00098 33.9 10.5 89 812-914 7-104 (126)
36 3sz7_A HSC70 cochaperone (SGT) 67.6 26 0.0009 36.1 10.8 90 811-914 13-111 (164)
37 2fo7_A Synthetic consensus TPR 66.9 34 0.0012 32.5 10.9 86 813-912 5-99 (136)
38 3mkr_A Coatomer subunit epsilo 65.8 1.9E+02 0.0065 33.1 22.0 83 816-911 6-94 (291)
39 1na0_A Designed protein CTPR3; 65.2 37 0.0013 32.0 10.6 88 812-913 12-108 (125)
40 3as5_A MAMA; tetratricopeptide 62.9 42 0.0014 34.1 11.2 115 812-970 45-168 (186)
41 4gyw_A UDP-N-acetylglucosamine 60.3 25 0.00085 46.7 10.9 114 812-969 46-168 (723)
42 3uq3_A Heat shock protein STI1 60.2 37 0.0013 36.8 10.8 194 812-1049 41-235 (258)
43 1fch_A Peroxisomal targeting s 59.7 41 0.0014 39.0 11.6 123 812-967 220-351 (368)
44 2ho1_A Type 4 fimbrial biogene 59.4 66 0.0023 35.0 12.7 87 812-912 74-171 (252)
45 2pl2_A Hypothetical conserved 59.3 32 0.0011 37.5 10.0 88 812-913 8-115 (217)
46 4gcn_A Protein STI-1; structur 59.3 34 0.0012 34.1 9.4 87 812-912 11-113 (127)
47 4eqf_A PEX5-related protein; a 58.9 2.6E+02 0.0087 32.3 21.7 90 811-914 67-165 (365)
48 3q49_B STIP1 homology and U bo 57.0 42 0.0014 32.8 9.6 90 811-914 11-109 (137)
49 1a17_A Serine/threonine protei 57.0 69 0.0024 32.1 11.5 89 811-913 15-112 (166)
50 3cv0_A Peroxisome targeting si 54.3 37 0.0012 38.4 9.7 53 814-880 60-112 (327)
51 2pl2_A Hypothetical conserved 53.4 59 0.002 35.4 10.9 114 812-970 42-175 (217)
52 3mkr_A Coatomer subunit epsilo 52.8 65 0.0022 37.2 11.6 110 812-970 104-224 (291)
53 1hxi_A PEX5, peroxisome target 52.4 36 0.0012 33.7 8.1 89 811-913 19-116 (121)
54 2vq2_A PILW, putative fimbrial 52.3 84 0.0029 33.0 11.7 87 812-912 45-143 (225)
55 1elw_A TPR1-domain of HOP; HOP 51.6 55 0.0019 30.4 9.1 87 812-912 7-102 (118)
56 3qky_A Outer membrane assembly 51.5 2.8E+02 0.0095 30.5 18.0 87 1157-1243 15-101 (261)
57 3u4t_A TPR repeat-containing p 48.9 97 0.0033 34.0 12.0 114 812-969 6-131 (272)
58 2xcb_A PCRH, regulatory protei 48.6 1.1E+02 0.0037 30.6 11.2 88 813-914 22-118 (142)
59 2gw1_A Mitochondrial precursor 47.9 61 0.0021 39.4 10.9 86 812-912 240-334 (514)
60 3fp2_A TPR repeat-containing p 47.6 4.5E+02 0.016 31.8 34.5 86 811-911 27-121 (537)
61 1hh8_A P67PHOX, NCF-2, neutrop 45.6 2.2E+02 0.0076 29.8 13.8 157 811-1000 8-173 (213)
62 4gco_A Protein STI-1; structur 45.1 31 0.0011 34.4 6.3 52 886-967 17-68 (126)
63 3u4t_A TPR repeat-containing p 43.8 3.5E+02 0.012 29.4 17.9 25 1394-1418 230-254 (272)
64 2vsy_A XCC0866; transferase, g 43.5 84 0.0029 39.6 11.5 88 812-913 26-122 (568)
65 2fbn_A 70 kDa peptidylprolyl i 41.9 1E+02 0.0035 32.6 10.3 97 812-913 41-153 (198)
66 3ma5_A Tetratricopeptide repea 41.0 39 0.0013 32.0 6.0 25 889-913 14-38 (100)
67 2vgx_A Chaperone SYCD; alterna 41.0 1E+02 0.0035 31.4 9.7 87 813-913 25-120 (148)
68 3gyz_A Chaperone protein IPGC; 40.6 95 0.0032 32.3 9.5 86 813-912 40-134 (151)
69 4abn_A Tetratricopeptide repea 40.5 44 0.0015 41.5 8.0 88 812-913 105-210 (474)
70 2fo7_A Synthetic consensus TPR 38.9 1.2E+02 0.0041 28.4 9.4 86 813-912 39-133 (136)
71 1elr_A TPR2A-domain of HOP; HO 38.7 1E+02 0.0036 29.0 8.9 86 812-911 7-108 (131)
72 3gyz_A Chaperone protein IPGC; 37.8 89 0.003 32.5 8.7 79 859-967 11-91 (151)
73 4ga2_A E3 SUMO-protein ligase 37.3 84 0.0029 32.0 8.4 91 809-913 31-131 (150)
74 4ga2_A E3 SUMO-protein ligase 36.3 1.7E+02 0.0058 29.7 10.5 98 1158-1263 32-129 (150)
75 3upv_A Heat shock protein STI1 35.8 57 0.0019 31.6 6.5 53 886-968 8-60 (126)
76 1p5q_A FKBP52, FK506-binding p 35.7 1.2E+02 0.004 35.8 10.3 97 812-913 150-261 (336)
77 2xev_A YBGF; tetratricopeptide 35.7 1.1E+02 0.0039 29.2 8.7 84 1160-1243 5-88 (129)
78 2e2e_A Formate-dependent nitri 35.5 1.2E+02 0.0041 31.2 9.3 88 812-913 47-146 (177)
79 3rkv_A Putative peptidylprolyl 35.2 2.2E+02 0.0074 28.8 11.2 81 811-913 13-94 (162)
80 4i17_A Hypothetical protein; T 33.6 2.3E+02 0.0079 30.2 11.7 89 812-913 10-107 (228)
81 1xnf_A Lipoprotein NLPI; TPR, 33.1 1.3E+02 0.0044 32.9 9.7 88 812-913 46-142 (275)
82 2c2l_A CHIP, carboxy terminus 33.0 1.2E+02 0.0042 34.5 9.6 89 812-914 7-104 (281)
83 4i17_A Hypothetical protein; T 32.9 1.2E+02 0.0041 32.6 9.1 85 813-911 46-146 (228)
84 1xi4_A Clathrin heavy chain; a 32.8 1.1E+02 0.0037 43.5 10.3 105 811-968 1136-1243(1630)
85 3nsz_A CK II alpha, casein kin 31.9 57 0.002 37.8 6.7 51 1757-1807 152-204 (330)
86 3urz_A Uncharacterized protein 31.7 1.2E+02 0.0042 32.6 8.9 87 813-913 8-119 (208)
87 1b89_A Protein (clathrin heavy 31.5 25 0.00087 43.8 3.6 103 811-966 63-168 (449)
88 2dba_A Smooth muscle cell asso 31.0 1.4E+02 0.0046 29.1 8.5 92 811-913 30-130 (148)
89 2vsy_A XCC0866; transferase, g 30.9 1E+02 0.0036 38.8 9.4 55 858-912 24-87 (568)
90 3sz7_A HSC70 cochaperone (SGT) 30.6 1.1E+02 0.0039 31.1 8.1 79 860-968 14-101 (164)
91 2l6j_A TPR repeat-containing p 29.2 71 0.0024 29.7 5.7 54 887-970 9-62 (111)
92 2h6f_A Protein farnesyltransfe 29.2 1.2E+02 0.0042 36.6 9.2 88 813-914 101-198 (382)
93 3qou_A Protein YBBN; thioredox 29.1 2.1E+02 0.0073 32.5 10.9 114 812-969 120-242 (287)
94 1hh8_A P67PHOX, NCF-2, neutrop 29.0 1.7E+02 0.0057 30.8 9.4 87 812-912 40-151 (213)
95 4gcn_A Protein STI-1; structur 29.0 70 0.0024 31.7 5.9 53 887-969 13-65 (127)
96 2xev_A YBGF; tetratricopeptide 28.8 1.4E+02 0.0048 28.5 8.0 70 1158-1227 40-109 (129)
97 2vyi_A SGTA protein; chaperone 28.7 2.1E+02 0.0071 26.7 9.2 26 887-912 51-76 (131)
98 1ihg_A Cyclophilin 40; ppiase 28.6 1.2E+02 0.004 36.5 8.8 102 812-913 226-338 (370)
99 1zar_A RIO2 kinase; serine kin 28.0 19 0.00065 41.8 1.6 26 1758-1785 216-241 (282)
100 1a17_A Serine/threonine protei 27.9 51 0.0017 33.1 4.7 27 886-912 17-43 (166)
101 2lni_A Stress-induced-phosphop 27.8 1.9E+02 0.0066 27.3 8.8 82 858-969 17-107 (133)
102 1zth_A RIO1 serine protein kin 27.5 24 0.00084 40.1 2.3 25 1758-1785 194-218 (258)
103 3qky_A Outer membrane assembly 27.3 2.6E+02 0.0089 30.7 10.9 91 812-913 55-179 (261)
104 2vgx_A Chaperone SYCD; alterna 26.1 1.4E+02 0.0049 30.3 7.8 82 1156-1243 20-101 (148)
105 1qqe_A Vesicular transport pro 26.1 2E+02 0.0069 32.6 9.9 47 862-913 62-108 (292)
106 2kck_A TPR repeat; tetratricop 25.8 2E+02 0.0067 26.1 8.2 87 813-913 10-108 (112)
107 2kck_A TPR repeat; tetratricop 25.7 1.4E+02 0.0047 27.3 7.0 26 887-912 11-36 (112)
108 1na3_A Designed protein CTPR2; 25.5 2.6E+02 0.009 24.5 8.8 64 1157-1223 9-72 (91)
109 1xnf_A Lipoprotein NLPI; TPR, 25.5 1.2E+02 0.0043 33.0 7.8 81 823-913 19-108 (275)
110 4abn_A Tetratricopeptide repea 25.4 1.3E+02 0.0044 37.2 8.6 87 812-913 140-252 (474)
111 2of3_A ZYG-9; multifunctional 25.3 1.2E+02 0.0042 35.0 7.7 77 1386-1468 86-173 (266)
112 3ro3_A PINS homolog, G-protein 25.2 3.9E+02 0.013 25.7 10.8 69 812-913 12-80 (164)
113 3q49_B STIP1 homology and U bo 24.5 1.9E+02 0.0065 27.8 8.2 79 860-968 12-99 (137)
114 3mkl_A HTH-type transcriptiona 24.3 1.2E+02 0.004 30.2 6.5 100 100-213 3-103 (120)
115 3nf1_A KLC 1, kinesin light ch 24.1 2.2E+02 0.0076 31.4 9.7 95 812-912 72-183 (311)
116 1kt0_A FKBP51, 51 kDa FK506-bi 24.0 2.3E+02 0.0079 34.8 10.5 97 812-913 271-382 (457)
117 3edt_B KLC 2, kinesin light ch 23.3 2.7E+02 0.0091 30.1 9.9 94 812-911 46-156 (283)
118 3sf4_A G-protein-signaling mod 23.2 8.7E+02 0.03 27.7 28.7 304 812-1245 12-361 (406)
119 2yhc_A BAMD, UPF0169 lipoprote 22.9 1.7E+02 0.0059 31.6 8.2 85 1159-1243 6-90 (225)
120 2kc7_A BFR218_protein; tetratr 22.6 1.2E+02 0.0039 27.9 5.8 27 887-913 5-31 (99)
121 4e7w_A Glycogen synthase kinas 22.6 1E+02 0.0034 37.3 6.7 28 1757-1784 163-190 (394)
122 3iqc_A FLIS, flagellar protein 22.6 3.6E+02 0.012 27.7 9.8 48 1024-1072 39-94 (131)
123 3k9i_A BH0479 protein; putativ 22.1 1.2E+02 0.004 29.2 5.9 54 887-970 32-85 (117)
124 3e3p_A Protein kinase, putativ 22.0 1.1E+02 0.0038 35.8 6.8 28 1758-1785 154-181 (360)
125 3rkv_A Putative peptidylprolyl 21.7 1.3E+02 0.0046 30.5 6.6 28 885-912 14-41 (162)
126 3ro3_A PINS homolog, G-protein 21.5 5.4E+02 0.018 24.6 11.2 69 812-913 52-120 (164)
127 1qqe_A Vesicular transport pro 21.3 4.1E+02 0.014 30.0 11.2 44 866-914 106-150 (292)
128 2l6j_A TPR repeat-containing p 21.2 3.7E+02 0.013 24.5 9.2 84 1157-1243 4-90 (111)
129 2v5f_A Prolyl 4-hydroxylase su 21.1 93 0.0032 29.9 4.8 72 810-913 6-77 (104)
130 1elw_A TPR1-domain of HOP; HOP 21.0 2.9E+02 0.0099 25.1 8.4 80 1157-1242 4-83 (118)
131 2pzi_A Probable serine/threoni 20.7 1.4E+02 0.0047 39.1 7.8 89 818-912 400-497 (681)
132 2xcb_A PCRH, regulatory protei 20.5 3.4E+02 0.012 26.7 9.3 66 1157-1225 52-117 (142)
133 2pzi_A Probable serine/threoni 20.5 2.1E+02 0.0073 37.2 9.6 113 812-969 436-557 (681)
134 2h6f_A Protein farnesyltransfe 20.4 2E+02 0.0069 34.7 8.7 86 814-913 136-231 (382)
135 3eb0_A Putative uncharacterize 20.4 1.3E+02 0.0044 36.0 6.9 27 1758-1784 164-190 (383)
136 1nd4_A Aminoglycoside 3'-phosp 20.4 38 0.0013 37.6 2.1 28 1754-1783 184-212 (264)
137 2y7j_A Phosphorylase B kinase 20.2 37 0.0013 40.7 2.0 26 1758-1784 223-248 (365)
138 1ua2_A CAK, cell division prot 20.2 2E+02 0.0069 33.6 8.5 28 1757-1785 134-161 (346)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=100.00 E-value=6.9e-58 Score=586.89 Aligned_cols=469 Identities=19% Similarity=0.315 Sum_probs=342.6
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+.-|++|+.+.+......+..+|.-|=..+ .++.|.++..+.+.+.+....+..+|||++.|.++
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dALeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLlQLVQALKyE 155 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDALELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLLQLVQALKYE 155 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGS
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 479999999999998776667899999997654 35678999999999999999999999999999987
Q ss_pred cccc----------------------------------------------------------------------------
Q 000172 1435 KDAL---------------------------------------------------------------------------- 1438 (1935)
Q Consensus 1435 ~~~~---------------------------------------------------------------------------- 1438 (1935)
.-..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (696)
T 2x6h_A 156 DPRHIVHLHGCIFPERDVVRSILDDNGSLLDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDKSVSPGSAGGSGSG 235 (696)
T ss_dssp CHHHHHHHHHHHC-------------------------------------------------------------------
T ss_pred chhhhcccccccccchhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2000
Q ss_pred -------c--c---------------------c------cHHHHHHHHHHHHHHhCCc---hhHHHHHHhccccchhhhh
Q 000172 1439 -------G--L---------------------H------NFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQ 1479 (1935)
Q Consensus 1439 -------~--~---------------------~------~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~~s~~~~~~~ 1479 (1935)
+ . . .....|..+|.+.+...|. +.+|.|.+....+....
T Consensus 236 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~~~~~~-- 313 (696)
T 2x6h_A 236 GQGSVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPANLCTFLIQRACTNATLANYFYWYLSIEVEEVESVR-- 313 (696)
T ss_dssp -------------------------------------------CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-------
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhhChhhHHHHHHHhHhhccCccccc--
Confidence 0 0 0 0145688899999988774 68888877654311000
Q ss_pred ccccchhhhhhHH-HHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHhhh-hcccccccccc-chhhhhhcc--c
Q 000172 1480 RSRNSFVVDMDKK-LAAENLLEELSS------YHGAIIRQMKQMVDVYIKLAELE-TRREDTNKRIQ-LPREIRCLR--Q 1548 (1935)
Q Consensus 1480 r~~~~~~v~~~r~-~aa~~il~~l~~------~~~~~~~~~~~l~~~~~~La~~~-~~~e~~~~~~~-~~~~l~~l~--~ 1548 (1935)
.+.... ..+. ...+.++..+.+ .....+..-..+++.+.+++..- ..+....+++. +...+.... .
T Consensus 314 -~~~~~~--~~~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~~~~~~L~~i~~~ik~~~~~~~~k~e~L~~~L~~~~~~~ 390 (696)
T 2x6h_A 314 -KQDERA--HDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPGNRNKKTEKFQKLLAEQDMFK 390 (696)
T ss_dssp -CCHHHH--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHSTTSSS
T ss_pred -cccchH--HHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhcchhhcc
Confidence 000000 0000 112333433332 12233344445677777766532 11111111111 111111110 0
Q ss_pred cccccccccccCCCCCCcccCCCccccccccc-eEEEecCCCcceEEEEEecC-CcEEEeeeecCCCcchhhHHHHHHHH
Q 000172 1549 LELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSD-GHKYRQLAKSGNDDLRQDAVMEQFFG 1626 (1935)
Q Consensus 1549 l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~~-~~~v~~s~~~Pk~i~~~gsd-Gk~y~~L~K~G~dDlRqD~r~~Qlf~ 1626 (1935)
..+..+....+|.+| ...|.+|.+ .+.|++|+++||+|+|+|+| |+.|.||+|+ +||+|||+|+||+|+
T Consensus 391 ~~l~~~~~~~lP~~p--------~v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~-gDDLRQD~rv~Ql~~ 461 (696)
T 2x6h_A 391 VNFTNFEPIPFPLDP--------EIYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKH-GDDLRQDQLILQMIT 461 (696)
T ss_dssp SCTTSCCCEECSSCT--------TSEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEEC-SSCTHHHHHHHHHHH
T ss_pred cccccCCCccCCCCC--------CeEEEEEecCeEEEcccccCCeEEEEEecCCCCceeEEEec-CcccchhHHHHHHHH
Confidence 001111113344333 257889986 68999999999999999999 9999999995 599999999999999
Q ss_pred HHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhH
Q 000172 1627 LVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDK 1706 (1935)
Q Consensus 1627 lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 1706 (1935)
+||.+|++++ |+|.+++|+|||+++++||||||+ ++|+++|+... +
T Consensus 462 lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~-s~tl~~i~~~~----------~------------------- 507 (696)
T 2x6h_A 462 LMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVD-SCTVAEVLARE----------G------------------- 507 (696)
T ss_dssp HHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCC-CEEHHHHHHHS----------S-------------------
T ss_pred HHHHHHHhCC----CCcEEeccEEEeccCCCCeeeeCC-CccHHHHHHhc----------C-------------------
Confidence 9999999985 899999999999999999999997 57999988531 0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhccCChHHH----HHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecch
Q 000172 1707 RIAFQEVCENFRPVLHYFFLERFLQPAYWF----EKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGV 1782 (1935)
Q Consensus 1707 ~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~----~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~ 1782 (1935)
-+++||.+.||++..|| ++|++|++|+|+|||+|||||||||||+|||||+ ||+++|||||+
T Consensus 508 -------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid~-tG~v~HIDFG~ 573 (696)
T 2x6h_A 508 -------------NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLTT-NGKLFHIDFGY 573 (696)
T ss_dssp -------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEECT-TSCEEECCCCS
T ss_pred -------------hHHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEeC-CCCEEEEeehh
Confidence 14678999999998887 7999999999999999999999999999999994 99999999999
Q ss_pred hhccccCCCCCCCCCccccHHHHhhccccccchh--hHHHHHHHHHHHhcChHHHHHHHHHHccCCCcccccChhHHHhh
Q 000172 1783 AFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEGV--FRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQR 1860 (1935)
Q Consensus 1783 ~F~~g~~l~~pE~VPFRLTrniv~~mG~~GveG~--Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~~~~k~~~~ 1860 (1935)
+|+++ +.||.|||||||||+++||+.|++|. |+.+|+.++++||++++.|++++++|++||+.+|...+.
T Consensus 574 ~f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp~~~~~~~----- 645 (696)
T 2x6h_A 574 ILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMVDATVPDIALEPD----- 645 (696)
T ss_dssp CTTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCTTTTSSGG-----
T ss_pred hhccC---CCCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCCccccCHH-----
Confidence 99988 47999999999999999999999985 999999999999999999999999999999999964331
Q ss_pred hhccccccccCCCCCccccccchhHHHHHHHHHhhhcCCCCCCccCHHHHHHHHHHHhcCch--hhhhhCccccc
Q 000172 1861 QKEMDDDLETGLEGPEDEYEGNKDAERALIRVKQKLDGYEGGEMRSVHGQVQQLIQDAIDPE--RFCLMFPGWGA 1933 (1935)
Q Consensus 1861 ~~~~~~~~~~~~~~~~~~~~~n~~a~~~l~rv~~KL~g~~~~~~lsV~~qV~~LI~~Atd~~--NLa~m~~gW~P 1933 (1935)
.++..+++|+...... -....+|..||++|.+.- ++--++..|..
T Consensus 646 --------------------------~~i~~l~~rf~l~lse--eea~~~~~~lI~~S~~s~~t~~~d~~h~~aq 692 (696)
T 2x6h_A 646 --------------------------KAVKKVEENLQLGLTD--EEAVQHLQSLLDVSITAVMPALVEQIHRFTQ 692 (696)
T ss_dssp --------------------------GHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2466777887652211 124568899999997744 44444455544
No 2
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=100.00 E-value=1.2e-55 Score=557.58 Aligned_cols=423 Identities=20% Similarity=0.341 Sum_probs=309.6
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+.-|++|+.+++......+..++.-|=..+ .++.|.+...+.+.+.+...++.+++||++.|.++
T Consensus 62 ~~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALELL~~~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQALKyE 141 (614)
T 3ls8_A 62 EKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYE 141 (614)
T ss_dssp GGGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGGGSTTCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHGGGS
T ss_pred hhHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHHHHhCcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhcc
Confidence 359999999999988776666889999997764 35678999999999999999999999999999876
Q ss_pred cccc-------------cc-------------------------------c------------cHHHHHHHHHHHHHHhC
Q 000172 1435 KDAL-------------GL-------------------------------H------------NFQFALVSLVKKMAIDH 1458 (1935)
Q Consensus 1435 ~~~~-------------~~-------------------------------~------------~f~~~L~~Ll~ri~~~h 1458 (1935)
.... +. + .....|..+|++.|...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi~RAl~n 221 (614)
T 3ls8_A 142 NFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRACKN 221 (614)
T ss_dssp CHHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHHHHHHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCChHHHHHHHHHhcC
Confidence 3210 00 0 00034889999999988
Q ss_pred Cc---hhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHhhhhc
Q 000172 1459 PY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYH------GAIIRQMKQMVDVYIKLAELETR 1529 (1935)
Q Consensus 1459 P~---~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~~~~------~~~~~~~~~l~~~~~~La~~~~~ 1529 (1935)
|. ..+|.|.+........ .+ ....-+.-. ...+.++..+.+.. ...+..-..+.+.+.++++.-..
T Consensus 222 ~~ig~~lyW~L~~E~~~~~~~--~~--~~~~~~~Y~-~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v~~ 296 (614)
T 3ls8_A 222 STLANYLYWYVIVECEDQDTQ--QR--DPKTHEMYL-NVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQR 296 (614)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH--HH--CHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheeeeccCcccc--cc--chHHHHHHH-HHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 86 4677777654221100 00 000000000 01122222222211 11122222355555666543211
Q ss_pred -ccccccccc-chhhhhhccccccccccccccCCCCCCcccCCCccccccccc-eEEEecCCCcceEEEEEecCCcEEEe
Q 000172 1530 -REDTNKRIQ-LPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLAE-SVMVMNGINAPKVVECFGSDGHKYRQ 1606 (1935)
Q Consensus 1530 -~e~~~~~~~-~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~~-~~~v~~s~~~Pk~i~~~gsdGk~y~~ 1606 (1935)
.....+++. +...+............+..+|.+| ..+|.+|.+ .+.|++|+++||+|+|+|+||+.|.|
T Consensus 297 ~~~~~~kk~e~L~~~L~~~~~~~l~~~~~~~lPl~P--------~v~I~~i~p~~~~V~~Sk~~P~~l~~~gsDG~~y~~ 368 (614)
T 3ls8_A 297 ESGNRKKKNERLQALLGDNEKMNLSDVELIPLPLEP--------QVKIRGIIPETATLFKSALMPAQLFFKTEDGGKYPV 368 (614)
T ss_dssp SCSCHHHHHHHHHHHHHCHHHHCCSSCSSEEETTEE--------EEEEEEECGGGCEECSSTTCCEEEEEEETTSCEEEE
T ss_pred hccchHHHHHHHHHHHhchhhcccccCCCCCCCCCC--------ceEEEEEecCeeEEeecccCeEEEEEEccCCCEEEE
Confidence 111111111 1111111000000001122345444 247889986 78999999999999999999999999
Q ss_pred eeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCC
Q 000172 1607 LAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRY 1686 (1935)
Q Consensus 1607 L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~ 1686 (1935)
|+|+ +||||||+++||+|++||.+|++++ ++|.|++|+|||+++++||||||++ +|+.+++...
T Consensus 369 i~K~-gDDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il~~~---------- 432 (614)
T 3ls8_A 369 IFKH-GDDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVLDTE---------- 432 (614)
T ss_dssp EEEE-SSCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHHHHHT----------
T ss_pred EEec-CCcchHHHHHHHHHHHHHHHHHhcC----CCceeeccEEEEecCCCceEEEeCC-ccHHHHHHcc----------
Confidence 9996 5999999999999999999999874 8999999999999999999999997 6888876420
Q ss_pred CCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHH----HHHHHHHHHHHHHHHHHHhhcccCCCC
Q 000172 1687 GIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYW----FEKRLAYTRSVAASSMVGYIVGLGDRH 1762 (1935)
Q Consensus 1687 ~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w----~~~R~~FtrS~A~~S~vgYILGLGDRH 1762 (1935)
..+.+||.+.+|++..| +++|.+|++|+|+|||+||||||||||
T Consensus 433 --------------------------------~~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~YILGigDRH 480 (614)
T 3ls8_A 433 --------------------------------GSIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITYILGVGDRH 480 (614)
T ss_dssp --------------------------------SSHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred --------------------------------ChHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhheeeeccCCC
Confidence 01456777888887766 479999999999999999999999999
Q ss_pred CCeEEEecCCCcEEEeecchhhccccCCCCCCCCCccccHHHHhhccccccch--hhHHHHHHHHHHHhcChHHHHHHHH
Q 000172 1763 AMNILIDQATAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGVTGVEG--VFRRCCEKTLSVMRTNKEALLTIVE 1840 (1935)
Q Consensus 1763 ~~NILid~~TG~vvHIDfg~~F~~g~~l~~pE~VPFRLTrniv~~mG~~GveG--~Fr~~~~~t~~~LR~~~~~l~~iL~ 1840 (1935)
++||||| .||++||||||++|+++ |+||.||||||+||+++||++|+|| .|+.+|+.++.+||+|++.|+++++
T Consensus 481 ~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~~~il~l~~ 556 (614)
T 3ls8_A 481 LDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYSNLILNLFS 556 (614)
T ss_dssp TTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CcceeEc-CCCCEeeeehHHhhccC---CCCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 9999999 69999999999999987 5899999999999999999999997 9999999999999999999999999
Q ss_pred HHccCCCcccccCh
Q 000172 1841 VFIHDPLYKWALSP 1854 (1935)
Q Consensus 1841 ~fl~DPL~~W~~~~ 1854 (1935)
+|+.+++.+|...+
T Consensus 557 lM~~s~lp~~~~~~ 570 (614)
T 3ls8_A 557 LMVDANIPDIALEP 570 (614)
T ss_dssp TTTTSCCHHHHTSG
T ss_pred HHhcCCCCccccCh
Confidence 99999999886543
No 3
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=100.00 E-value=9.1e-55 Score=575.81 Aligned_cols=415 Identities=21% Similarity=0.298 Sum_probs=307.7
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHH---HH--hc------------CccHHHHHHHHHhhhcccccchhhhhHHHHh
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSL---WF--SL------------SSRQNVIKNMVDTIDEVQSYKFIPLVYQIAS 1429 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsL---Wl--~~------------~~~~~v~~~~~~~~~~vp~~kfl~~lpQL~s 1429 (1935)
..|+..+++|+.+.+......+..+|.- |- .. ..++.|.+...+.+.++|...++..+|||++
T Consensus 445 p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLVQ 524 (961)
T 1e7u_A 445 PKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLVQ 524 (961)
T ss_dssp GGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cHHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3588999999999987777778889888 93 12 1357799999999999999999999999999
Q ss_pred hcCCCccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHHh--
Q 000172 1430 RMGSTKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS-- 1504 (1935)
Q Consensus 1430 rL~~~~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~~-- 1504 (1935)
.|.++.. ....|..+|.+.|...+. +.+|.|.+..... ...+.|. ..+++.+.+
T Consensus 525 aLkyE~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~---~~~~~r~------------~~ll~~~l~~~ 583 (961)
T 1e7u_A 525 AVKFEPY------HDSALARFLLKRGLRNKRIGHFLFWFLRSEIAQS---RHYQQRF------------AVILEAYLRGC 583 (961)
T ss_dssp HGGGCSS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC---TTTHHHH------------HHHHHHHHTTS
T ss_pred HHhhccc------cCChHHHHHHHHHhcChHHHHHHHHHhhhhccCC---hhHHHHH------------HHHHHHHHhhc
Confidence 9998641 124588888888887654 6778887643110 0001111 123333221
Q ss_pred --hH-HHHHHHHHHHHHHHHHHHhhhhccccccccc------cchhhhhhccccccccccccccCCCCCCcccCCCcccc
Q 000172 1505 --YH-GAIIRQMKQMVDVYIKLAELETRREDTNKRI------QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYF 1575 (1935)
Q Consensus 1505 --~~-~~~~~~~~~l~~~~~~La~~~~~~e~~~~~~------~~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I 1575 (1935)
.. ..+.++ ..+.+.+.+++..-.......+.+ .+...+..+...+ +| .+..+|.+|. ..|
T Consensus 584 ~~~~~~~~~~q-~~~~~~L~~i~~~ik~~~~~~~~~~~~~~~~l~~~L~~l~~i~-vP-~~~~lP~dP~--------v~i 652 (961)
T 1e7u_A 584 GTAMLHDFTQQ-VQVIDMLQKVTIDIKSLSAEKYDVSSQVISQLKQKLENLQNLN-LP-QSFRVPYDPG--------LKA 652 (961)
T ss_dssp CHHHHHHHHHH-HHHHHHHHHHHHHSGGGGCCSSCCCHHHHHHHHHHHHHHHHTT-SC-SCEEETTEEE--------EEE
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHhhhcCc-CC-CCccCCCCCc--------eEE
Confidence 11 122222 235555556654311110000000 0111223332221 12 1233444432 245
Q ss_pred ccc-cceEEEecCCCcceEEEEEecCCc-----EEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecce
Q 000172 1576 KGL-AESVMVMNGINAPKVVECFGSDGH-----KYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYK 1649 (1935)
Q Consensus 1576 ~~f-~~~~~v~~s~~~Pk~i~~~gsdGk-----~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ 1649 (1935)
.+| .+.+.|++|+++|++|+++|+||+ .|.||+|+| ||||||+|+||+|++||.+|+++ +|+|.+++|+
T Consensus 653 ~~i~~~~~~V~~S~~~P~~l~~~g~Dg~~~~~~~~~~i~K~g-DDLRQD~~v~Ql~~lmn~il~~~----~~~L~i~~Y~ 727 (961)
T 1e7u_A 653 GALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHG-DDLRQDMLILQILRIMESIWETE----SLDLCLLPYG 727 (961)
T ss_dssp EEECGGGCEECSSTTCCEEEEEEESCTTCSCCCCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCC
T ss_pred EEeecceEEEecccCCceEEEEEccCCCcccCCceeEEEecC-cccccchhHHHHHHHHHHHHhhc----CCCeEEEeee
Confidence 554 567799999999999999999995 899999964 99999999999999999999875 5899999999
Q ss_pred EEEcCCCCceeeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhc
Q 000172 1650 VVPFTPSAGILEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERF 1729 (1935)
Q Consensus 1650 ViPLs~~~GLIE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f 1729 (1935)
|||+++++||||||+|++|+++|+.... |....+ . .+++++||.+.+
T Consensus 728 Vipls~~~GlIE~V~ns~tl~~I~~~~~---g~~~~f--------------~----------------~~~L~~w~~~~~ 774 (961)
T 1e7u_A 728 CISTGDKIGMIEIVKDATTIAKIQQSTV---GNTGAF--------------K----------------DEVLSHWLKEKC 774 (961)
T ss_dssp EEEEETTEEEEECCSSEEEHHHHHHHHS---CSSSCC--------------C----------------SSHHHHHHHHHC
T ss_pred EEECCCCCCeEEecCCCccHHHHHHhcc---Cccccc--------------c----------------hhHHHHHHHHhC
Confidence 9999999999999999999999986432 111000 0 136788999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhccccC-CC-CCCCCCccccHHHHhh
Q 000172 1730 LQPAYWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGLM-LK-TPERVPFRLTRDIIDG 1807 (1935)
Q Consensus 1730 ~~p~~w~~~R~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~~-l~-~pE~VPFRLTrniv~~ 1807 (1935)
++++.|+.+|.+|++|+|+|||+|||||||||||+|||||+ ||+++|||||++|++++. ++ .||.|||||||||+++
T Consensus 775 ~~~~~~~~ar~~F~~S~A~ySvv~YILGigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~vPFRLT~~mv~~ 853 (961)
T 1e7u_A 775 PIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISE-TGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 853 (961)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEET-TCCEEECCCCCC----------CCCCCSSCCCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHccccCCCCcceEEec-CCCEEEEeehhhhccCccccCCCCCCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999996 999999999999999876 44 5999999999999999
Q ss_pred ccccccc-----hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1808 MGVTGVE-----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1808 mG~~Gve-----G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
||++|++ |.|+.+|+.++++||++++.|++++++|++||+.+|..
T Consensus 854 mG~~g~e~s~~fg~F~~~c~~~~~~LR~~~~~l~~ll~lm~~~~lp~~~~ 903 (961)
T 1e7u_A 854 MGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS 903 (961)
T ss_dssp TTCCSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSCSSCCC
T ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCccCc
Confidence 9999998 89999999999999999999999999999999999964
No 4
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=100.00 E-value=1.6e-54 Score=573.60 Aligned_cols=415 Identities=18% Similarity=0.243 Sum_probs=303.4
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+.-+++|+.+++......+..++.-|=..+ .++.|.+...+.+.+.|...++..+|||++.|.++
T Consensus 439 p~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE 518 (940)
T 2wxf_A 439 PEALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYE 518 (940)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGC
T ss_pred chHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 459999999999888766667788888886443 35678999999999999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhC---CchhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHHh----hHH
Q 000172 1435 KDALGLHNFQFALVSLVKKMAIDH---PYHTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSS----YHG 1507 (1935)
Q Consensus 1435 ~~~~~~~~f~~~L~~Ll~ri~~~h---P~~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~~----~~~ 1507 (1935)
+. ....|..+|.+.+... +++.+|.|.+...... .+.|. ..+++.+.+ ...
T Consensus 519 ~~------~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~~~----~~~r~------------~~ile~~~~~~~~~~~ 576 (940)
T 2wxf_A 519 SY------LDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPS----VALRF------------GLIMEAYCRGSTHHMK 576 (940)
T ss_dssp SS------SSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTCHH----HHHHH------------HHHHHHHHHHCHHHHH
T ss_pred cc------cccHHHHHHHHHHHhChHHHHHHHHHheecccCch----HHHHH------------HHHHHHHHhhcHHHHH
Confidence 42 1235777888887765 4578888877543211 11111 123333221 112
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc---cccccccc-cchhhhhhccccccccccccccCCCCCCcccCCCcccccccc-ceE
Q 000172 1508 AIIRQMKQMVDVYIKLAELETR---REDTNKRI-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESV 1582 (1935)
Q Consensus 1508 ~~~~~~~~l~~~~~~La~~~~~---~e~~~~~~-~~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~-~~~ 1582 (1935)
.+.++ ..+++.+.+++..-.. +....++. .+...+........+ +...+|.+| ...|.+|. +.+
T Consensus 577 ~l~~q-~~~~~~L~~i~~~ik~~~~~~~r~k~~~~L~~~l~~~~~~~~~--~~~~lP~~P--------~~~I~~~~~~~~ 645 (940)
T 2wxf_A 577 VLMKQ-GEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEAL--SHLQSPLDP--------STLLEEVCVEQC 645 (940)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHTSHHHHHHH--SSEEETTEE--------EEEECEECGGGC
T ss_pred HHHHH-HHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHhccchhhcc--CCCCCCCCC--------ceeEEEeccCce
Confidence 22222 2355555555543111 11111110 011111111000011 112234333 24678887 578
Q ss_pred EEecCCCcceEEEEEecC---CcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCce
Q 000172 1583 MVMNGINAPKVVECFGSD---GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1659 (1935)
Q Consensus 1583 ~v~~s~~~Pk~i~~~gsd---Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GL 1659 (1935)
.|++|+++|++|+++|+| |+.|.||+|+| ||+|||+|+||+|++||.+|++++ |+|.+++|+|||+++++||
T Consensus 646 ~V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~g-DDLRqD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~Gl 720 (940)
T 2wxf_A 646 TFMDSKMKPLWIMYSSEEAGSAGNVGIIFKNG-DDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTPYGCLPTGDRTGL 720 (940)
T ss_dssp EECSSTTCCEEEEEECTTTGGGGCEEEEEEES-SCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEEEETTEEE
T ss_pred EEcccccCCeEEEEEecCcCCCcceeEEEecC-cccchhHHHHHHHHHHHHHHHhCC----CCeEEEeeeEEEecCCCCe
Confidence 999999999999999999 99999999965 999999999999999999999984 8999999999999999999
Q ss_pred eeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHH
Q 000172 1660 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKR 1739 (1935)
Q Consensus 1660 IE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R 1739 (1935)
||||+|++|+++|+... ++... .. .| -.+++++||.+.|+ ++.|+.+|
T Consensus 721 IE~V~ns~tl~~I~~~~---~~~~~----------------~~------~f------~~~~l~~~~~~~~~-~~~~~~a~ 768 (940)
T 2wxf_A 721 IEVVLHSDTIANIQLNK---SNMAA----------------TA------AF------NKDALLNWLKSKNP-GEALDRAI 768 (940)
T ss_dssp EECCSSEEEHHHHHTCC---SSSTT----------------CC------SS------GGGHHHHHHHHHSC-TTHHHHHH
T ss_pred EeECCCCccHHHHHHhh---ccchh----------------hh------cc------CchhHHHHHHHhCC-HHHHHHHH
Confidence 99999999999987531 11000 00 00 02467889999994 46677888
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcccc-CCCC-CCCCCccccHHHHhhcccc--ccc-
Q 000172 1740 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLKT-PERVPFRLTRDIIDGMGVT--GVE- 1814 (1935)
Q Consensus 1740 ~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~-~l~~-pE~VPFRLTrniv~~mG~~--Gve- 1814 (1935)
.+|++|+|+|||+|||||||||||+|||||+ ||+++|||||++|++++ .+.+ ||.|||||||||+++||+. |.+
T Consensus 769 ~~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~ 847 (940)
T 2wxf_A 769 EEFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSE 847 (940)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcccEEEec-CCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCc
Confidence 9999999999999999999999999999996 99999999999999864 3554 9999999999999999863 444
Q ss_pred --hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1815 --GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1815 --G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
|.|+.+|+.++++||++++.|+++|++|++||+.+|..
T Consensus 848 ~~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~ 887 (940)
T 2wxf_A 848 KFERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCS
T ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCcccCc
Confidence 89999999999999999999999999999999999964
No 5
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=100.00 E-value=4.2e-54 Score=572.81 Aligned_cols=415 Identities=20% Similarity=0.269 Sum_probs=308.8
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhhhcccccchhhhhHHHHhhcCCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTIDEVQSYKFIPLVYQIASRMGST 1434 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~~~vp~~kfl~~lpQL~srL~~~ 1434 (1935)
..|+.-+++|+.+++......+..++.-|=..+ .++.|.+...+.+.+.|...++..+|||++.|.++
T Consensus 592 p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaLkyE 671 (1092)
T 2y3a_A 592 PQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYE 671 (1092)
T ss_dssp GGGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 459999999999988776667888888894443 24568999999999999999999999999999986
Q ss_pred ccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHH----hhHH
Q 000172 1435 KDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELS----SYHG 1507 (1935)
Q Consensus 1435 ~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~----~~~~ 1507 (1935)
.. ....|..+|.+.+...|. +.+|.|.+...... .+.+. ..+++.+. ....
T Consensus 672 ~~------~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~~~----~~~r~------------~~lle~~~~~~~~~~~ 729 (1092)
T 2y3a_A 672 PF------LDCALSRFLLERALDNRRIGQFLFWHLRSEVHTPA----VSVQF------------GVILEAYCRGSVGHMK 729 (1092)
T ss_dssp SS------SSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTSHH----HHHHH------------HHHHHHHHHHTTTTHH
T ss_pred cc------cccHHHHHHHHHHhhChHHHHHHHHHeeecccCch----HHHHH------------HHHHHHHHhhcHHHHH
Confidence 42 124588899999887654 78888877543211 01111 12333321 1222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc---cccccccc-cchhhhhhccccccccccccccCCCCCCcccCCCcccccccc-ceE
Q 000172 1508 AIIRQMKQMVDVYIKLAELETR---REDTNKRI-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESV 1582 (1935)
Q Consensus 1508 ~~~~~~~~l~~~~~~La~~~~~---~e~~~~~~-~~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~-~~~ 1582 (1935)
.+.++. .+++.+.+++..-.. +....++. .+...+........+ +...+|.+| ...|.+|. +.+
T Consensus 730 ~l~~Q~-~~~~~L~~is~~ik~~~~~~~r~k~~e~L~~~l~~~~~~~~~--~~~~lP~~P--------~v~I~~~~~~~~ 798 (1092)
T 2y3a_A 730 VLSKQV-EALNKLKTLNSLIKLNAVKLSRAKGKEAMHTCLKQSAYREAL--SDLQSPLNP--------CVILSELYVEKC 798 (1092)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSTTHHHHT--SSSCCSSCS--------SBCCCCCCGGGC
T ss_pred HHHHHH-HHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhccchhhcC--CCCCCCCCC--------ceEEEEEecCce
Confidence 232322 355555555542111 01111110 011111111100011 112244433 24677887 478
Q ss_pred EEecCCCcceEEEEEecC--CcEEEeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCcee
Q 000172 1583 MVMNGINAPKVVECFGSD--GHKYRQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGIL 1660 (1935)
Q Consensus 1583 ~v~~s~~~Pk~i~~~gsd--Gk~y~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GLI 1660 (1935)
.|++|+++|++|+++|+| |+.|.||+|+ +||+|||+|+||+|++||.+|++++ |+|.+++|+|||+++++|||
T Consensus 799 ~V~~S~~~P~rL~~~gsD~~G~~y~~L~K~-gDDLRQD~rv~Ql~~lmn~ll~~~~----~~L~i~~Y~Vipls~~~GLI 873 (1092)
T 2y3a_A 799 KYMDSKMKPLWLVYSSRAFGEDSVGVIFKN-GDDLRQDMLTLQMLRLMDLLWKEAG----LDLRMLPYGCLATGDRSGLI 873 (1092)
T ss_dssp EECSSTTCCEEEEEECTTTSSSEEEEEECC-SSCCHHHHHHHHHHHHHHHHHHHHS----CCCCCCCCCEECCSSSCCEE
T ss_pred EEeccccCceEEEEEecCCCCceeeEEEec-CcccchhHHHHHHHHHHHHHHHhCC----CCeEEecceEEEecCCCCeE
Confidence 999999999999999999 9999999995 5999999999999999999999874 89999999999999999999
Q ss_pred eecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHHH
Q 000172 1661 EWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKRL 1740 (1935)
Q Consensus 1661 E~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R~ 1740 (1935)
|||+|++|+++|+... ++... . . .| -.+++++||.+.+ .++.|+.+|+
T Consensus 874 E~V~ns~TL~~I~~~~---~~~~~---~-------------~------~f------~~~~L~~~~~~~~-~~~~~~~ar~ 921 (1092)
T 2y3a_A 874 EVVSTSETIADIQLNS---SNVAA---T-------------A------AF------NKDALLNWLKEYN-SGDDLDRAIE 921 (1092)
T ss_dssp ECCTTCCBHHHHHSSS---CTTTT---T-------------S------CS------STTHHHHHHHHHC-CTHHHHHHHH
T ss_pred eeCCCCccHHHHHHhh---ccchh---h-------------h------cc------CchHHHHHHHHhC-CHHHHHHHHH
Confidence 9999999999987531 11000 0 0 00 0246788999988 4467788899
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcccc-CCC-CCCCCCccccHHHHhhcccc--ccc--
Q 000172 1741 AYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL-MLK-TPERVPFRLTRDIIDGMGVT--GVE-- 1814 (1935)
Q Consensus 1741 ~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~-~l~-~pE~VPFRLTrniv~~mG~~--Gve-- 1814 (1935)
+||+|+|+|||+|||||||||||+|||||+ ||+++|||||++|++++ .+. .||.|||||||||+++||+. |.+
T Consensus 922 nF~~SlA~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~ 1000 (1092)
T 2y3a_A 922 EFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEK 1000 (1092)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCccEEEec-CCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcc
Confidence 999999999999999999999999999996 99999999999999864 344 49999999999999999753 454
Q ss_pred -hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1815 -GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1815 -G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
|.|+.+|+.++++||++++.|+++|++|++||+.+|+.
T Consensus 1001 fg~Fr~~c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~ 1039 (1092)
T 2y3a_A 1001 FGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTS 1039 (1092)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSS
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCccccc
Confidence 99999999999999999999999999999999999964
No 6
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=100.00 E-value=1.9e-52 Score=552.13 Aligned_cols=418 Identities=19% Similarity=0.287 Sum_probs=304.8
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHHHHHhcC------------ccHHHHHHHHHhh-hcccccchhhhhHHHHhhcCC
Q 000172 1367 GLALEGYKRCLVIGDKYDVRVVFRLVSLWFSLS------------SRQNVIKNMVDTI-DEVQSYKFIPLVYQIASRMGS 1433 (1935)
Q Consensus 1367 ~~Al~~Yl~sL~~s~~~~~~~i~RllsLWl~~~------------~~~~v~~~~~~~~-~~vp~~kfl~~lpQL~srL~~ 1433 (1935)
..|+.-+++|+.+++......+..+|.-|=..+ .++.|.+...+.+ .+.|....+..+|||++.|.+
T Consensus 585 p~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALKy 664 (1091)
T 3hhm_A 585 PEILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKY 664 (1091)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGGG
T ss_pred hhHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHHHhCcccCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence 359999999999988766667888988886543 3567889999999 999999999999999999998
Q ss_pred CccccccccHHHHHHHHHHHHHHhCCc---hhHHHHHHhccccchhhhhccccchhhhhhHHHHHHHHHHHHHhhHHHHH
Q 000172 1434 TKDALGLHNFQFALVSLVKKMAIDHPY---HTIFQLLALANGDRIKDKQRSRNSFVVDMDKKLAAENLLEELSSYHGAII 1510 (1935)
Q Consensus 1434 ~~~~~~~~~f~~~L~~Ll~ri~~~hP~---~~ly~L~a~~~s~~~~~~~r~~~~~~v~~~r~~aa~~il~~l~~~~~~~~ 1510 (1935)
+.- ..+.|..+|.+.|...|. +.+|.|.+...... ...|...+ .+.++.........+.
T Consensus 665 E~~------~ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~----~~~r~~~l--------Le~~~~~~~~~~~~l~ 726 (1091)
T 3hhm_A 665 EQY------LDNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKT----VSQRFGLL--------LESYCRACGMYLKHLN 726 (1091)
T ss_dssp CSS------SSCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTT----THHHHHHH--------HHHHHHHSCTHHHHHH
T ss_pred ccc------cccHHHHHHHHHHhhCHHHHHHHHHHeeecccCch----HHHHHHHH--------HHHHHhhCHHHHHHHH
Confidence 641 124688999999988876 56777776542211 01111111 1112211111222333
Q ss_pred HHHHHHHHHHHHHHhhhhc--cccccc-cc-cchhhhhhccccccccccccccCCCCCCcccCCCcccccccc-ceEEEe
Q 000172 1511 RQMKQMVDVYIKLAELETR--REDTNK-RI-QLPREIRCLRQLELVPVVTATVPIDCTCQYNEGSFPYFKGLA-ESVMVM 1585 (1935)
Q Consensus 1511 ~~~~~l~~~~~~La~~~~~--~e~~~~-~~-~~~~~l~~l~~l~~vp~~t~~lpi~~~~~y~~g~~~~I~~f~-~~~~v~ 1585 (1935)
+++ .+++.+.+++..-.. +....+ +. .+...+......+.. ....+|.+|. ..|.+|. +++.|+
T Consensus 727 rQ~-~~~~~L~~is~~ik~~~~~~~~~~k~~~L~~~L~~~~~~~~~--~~~~lPl~P~--------~~I~~i~~~~~~V~ 795 (1091)
T 3hhm_A 727 RQV-EAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDAL--QGFLSPLNPA--------HQLGNLRLEECRIM 795 (1091)
T ss_dssp HHH-HHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHSHHHHHHS--SSEEETTEEE--------EEECSBCGGGCEEC
T ss_pred HHH-HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhccchhhcc--cCCCCCCCcc--------eEEEEEeeceEEEe
Confidence 333 356666666653211 110111 01 111112211110000 1123454442 3577887 467999
Q ss_pred cCCCcceEEEEEecC--CcEE----EeeeecCCCcchhhHHHHHHHHHHHHHHHcCcccccCCeeeecceEEEcCCCCce
Q 000172 1586 NGINAPKVVECFGSD--GHKY----RQLAKSGNDDLRQDAVMEQFFGLVNTFLRNHRDTWKRRLGVRTYKVVPFTPSAGI 1659 (1935)
Q Consensus 1586 ~s~~~Pk~i~~~gsd--Gk~y----~~L~K~G~dDlRqD~r~~Qlf~lvN~lL~~~~et~rR~L~i~tY~ViPLs~~~GL 1659 (1935)
+|+++|++|+|+|+| |+.| .||+|. +||||||+++||+|++||.+|++++ ++|.|++|.|||+++++||
T Consensus 796 ~S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~-gDDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~Gl 870 (1091)
T 3hhm_A 796 SSAKRPLWLNWENPDIMSELLFQNNEIIFKN-GDDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGL 870 (1091)
T ss_dssp CSSSCCEEEEECCCSTTSTTTSCCEEEEEEE-SSCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEE
T ss_pred ecccCcEEEEEecCCCCCccccccceEEEEc-CcchhHHHHHHHHHHHHHHHHHhCC----CCceEeeeeEEEccCCCcc
Confidence 999999999999998 8899 999996 4999999999999999999999985 8999999999999999999
Q ss_pred eeecCCCCchHHHhhhhccCCCCCCCCCCCCchhhHhhhhhcchhhHHHHHHHHHhhhhhhHHHHHHHhccCChHHHHHH
Q 000172 1660 LEWVDGTVPLGDYLIGSTRNGGAHGRYGIGDWSFLKCREHMSNVKDKRIAFQEVCENFRPVLHYFFLERFLQPAYWFEKR 1739 (1935)
Q Consensus 1660 IE~v~~t~tL~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~f~~i~~~~~pvl~~~f~~~f~~p~~w~~~R 1739 (1935)
||||+|++|+++|+... |.... . .| -.+++++||.+.| ++..|+.+|
T Consensus 871 IE~V~ns~Tl~~I~~~~----~~~~~----------------~------~f------~~~~L~~~f~~~~-~~~~~~~ar 917 (1091)
T 3hhm_A 871 IEVVRNSHTIMQIQCKG----GLKGA----------------L------QF------NSHTLHQWLKDKN-KGEIYDAAI 917 (1091)
T ss_dssp EECCSSEEEHHHHHHSC----TTTCT----------------T------CC------CTTHHHHHHHTTS-CTTSHHHHH
T ss_pred eeecCCchhHHHHHHhh----Ccccc----------------c------cc------CchHHHHHHHhcC-ChHHHHHHH
Confidence 99999999999988632 10000 0 00 0246788999988 677888999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCeEEEecCCCcEEEeecchhhcccc--CCCCCCCCCccccHHHHhhccc--cccc-
Q 000172 1740 LAYTRSVAASSMVGYIVGLGDRHAMNILIDQATAEVVHIDLGVAFEQGL--MLKTPERVPFRLTRDIIDGMGV--TGVE- 1814 (1935)
Q Consensus 1740 ~~FtrS~A~~S~vgYILGLGDRH~~NILid~~TG~vvHIDfg~~F~~g~--~l~~pE~VPFRLTrniv~~mG~--~Gve- 1814 (1935)
.+|++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ ....||.||||||+||+++||+ .|+|
T Consensus 918 ~nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~ 996 (1091)
T 3hhm_A 918 DLFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTK 996 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSS
T ss_pred HHHHHHhhhhhheEEEEeecCCCCcceEEeC-CCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCccc
Confidence 9999999999999999999999999999996 99999999999999874 3456999999999999999964 4444
Q ss_pred ----hhhHHHHHHHHHHHhcChHHHHHHHHHHccCCCccccc
Q 000172 1815 ----GVFRRCCEKTLSVMRTNKEALLTIVEVFIHDPLYKWAL 1852 (1935)
Q Consensus 1815 ----G~Fr~~~~~t~~~LR~~~~~l~~iL~~fl~DPL~~W~~ 1852 (1935)
|.|+.+|+.++.+||++++.|++++++|+++|+.+|+.
T Consensus 997 s~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~ 1038 (1091)
T 3hhm_A 997 TREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQS 1038 (1091)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSS
T ss_pred chhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCccCc
Confidence 99999999999999999999999999999999999963
No 7
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=99.29 E-value=5.5e-13 Score=104.53 Aligned_cols=32 Identities=38% Similarity=0.636 Sum_probs=30.9
Q ss_pred ccCHHHHHHHHHHHhcCchhhhhhCcccccCC
Q 000172 1904 MRSVHGQVQQLIQDAIDPERFCLMFPGWGAWL 1935 (1935)
Q Consensus 1904 ~lsV~~qV~~LI~~Atd~~NLa~m~~gW~Pwl 1935 (1935)
++||++||++||++|||++|||+||+||+||+
T Consensus 2 ~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 2 ELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHhhhcccCC
Confidence 68999999999999999999999999999996
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.34 E-value=4 Score=49.43 Aligned_cols=87 Identities=9% Similarity=0.059 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|....++|-|..|+-+.+..... .| ..+...-.|..+|...++++.+.-.... +
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 94 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDG--------DP------DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT 94 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CC------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 457889999999999999999876532 11 1245566788899999999988777642 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
.......-|.+.|++++|+.+|+..+...
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 124 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSN 124 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 13456778999999999999999988743
No 9
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.16 E-value=4.1 Score=47.08 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.....-|-|..|+-+.+...... | ..+...-.+-.+|...++++.+.-.... +
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD--------P------DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--------c------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 4578899999999999999999765421 1 2245666788899999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.......-|.+.|++++|+.+|+..+...|
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 134677789999999999999999987543
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.17 E-value=1.5 Score=52.40 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
...++.....++-+..|..+.+..... .| ......-.|..+|...++.|.+...... +
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~--------~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 101 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NP------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI 101 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------CC------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH
Confidence 346788889999999999999876532 11 2244566788888888988887776541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
........|.+.|++++|+..|+..+..+|+ .......+-.++..+|.+
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPD------------------------------LYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT------------------------------CTHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHccCH
Confidence 1335667789999999999999998875432 112244566778888877
Q ss_pred hHHHHHh
Q 000172 963 HVLDMYC 969 (1935)
Q Consensus 963 ~~L~~y~ 969 (1935)
+....+.
T Consensus 152 ~~A~~~~ 158 (388)
T 1w3b_A 152 EEAKACY 158 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654444
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.13 E-value=5.4 Score=47.46 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=79.6
Q ss_pred HHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----c
Q 000172 814 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----K 884 (1935)
Q Consensus 814 ~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~----~ 884 (1935)
.+|....+.|-|..|+-+.+..... .| ..+...-.|..+|.+.++.|.+.-.... + .
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~--------~p------~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 69 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQ--------EP------DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEA 69 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence 3678888999999999988765432 11 1245566788899999999887665431 1 1
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhH
Q 000172 885 LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHV 964 (1935)
Q Consensus 885 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~ 964 (1935)
.......|.+.|++++|+..|+..+..+|+ ......++..++...|.++.
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPD------------------------------FIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHSCSSH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcc------------------------------hHHHHHHHHHHHHHcCCHHH
Confidence 346777899999999999999999875432 11235677888888888766
Q ss_pred HHHHh
Q 000172 965 LDMYC 969 (1935)
Q Consensus 965 L~~y~ 969 (1935)
...+.
T Consensus 120 A~~~~ 124 (388)
T 1w3b_A 120 AVQAY 124 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=93.63 E-value=7.8 Score=48.93 Aligned_cols=275 Identities=11% Similarity=-0.027 Sum_probs=155.5
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|....++|-|..|+-+.+...... | ........+..+|...++.|.+..+... +
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 373 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEID--------P------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA 373 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcC--------c------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH
Confidence 4568889999999999999988654321 1 1234466788889999998887777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.....+.-|.+.|++++|+.+|+..++..|. +......+..++...|.+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ------------------------------FGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHHHHcCCH
Confidence 1245677899999999999999988774332 112345677778878876
Q ss_pred hHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHH
Q 000172 963 HVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYR 1042 (1935)
Q Consensus 963 ~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~ 1042 (1935)
+....+.+... .. + + .+...|. . -+....+.|+.+++.+
T Consensus 424 ~~A~~~~~~~~---------------------~~---~---~-----------~~~~~~~-~--l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 424 DQAISAYTTAA---------------------RL---F---Q-----------GTHLPYL-F--LGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHHHHHHHHH---------------------HT---T---T-----------TCSHHHH-H--HHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHH---------------------Hh---C---c-----------cchHHHH-H--HHHHHHHcCCHHHHHH
Confidence 65543332211 10 0 0 0011111 1 1223446688888877
Q ss_pred HHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HHHhHHHHHHHhhhhccCcccccccccccccCCCCCccchhhhHHHHH
Q 000172 1043 KLKHSKQELVLSVACASEESTEYIYSAIVKL-QILCHLGVAWDIRWKSSGESINIYPEKQKIVSEPVIPTVGQLSWLNTE 1121 (1935)
Q Consensus 1043 ~i~~aR~~l~~eLsa~s~ES~~r~Y~~lvrL-q~L~ELEei~ei~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1121 (1935)
..+++... ..... .+|..+..+ ......+++.+ .
T Consensus 463 ~~~~~~~~-----~~~~~----~~~~~l~~~~~~~g~~~~A~~------------------------------------~ 497 (597)
T 2xpi_A 463 YLQSSYAL-----FQYDP----LLLNELGVVAFNKSDMQTAIN------------------------------------H 497 (597)
T ss_dssp HHHHHHHH-----CCCCH----HHHHHHHHHHHHTTCHHHHHH------------------------------------H
T ss_pred HHHHHHHh-----CCCCh----HHHHHHHHHHHHhCCHHHHHH------------------------------------H
Confidence 77766431 11111 122222111 11111111111 0
Q ss_pred HHHHHHhhhcchhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHH
Q 000172 1122 WSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLL 1201 (1935)
Q Consensus 1122 W~~rl~~~q~~~e~~epiL~~R~~vl~il~~~e~~~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~A 1201 (1935)
.++-+..... . -..+. .....|...+..+++.|++..|...+.++..+.+.. .......+
T Consensus 498 ~~~~~~~~~~-~---------------~~~p~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 557 (597)
T 2xpi_A 498 FQNALLLVKK-T---------------QSNEK-PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND---ANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHH-S---------------CCCSG-GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC---HHHHHHHH
T ss_pred HHHHHHhhhc-c---------------ccchh-hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHH
Confidence 1111100000 0 00111 114567788899999999999999988765543210 00012268
Q ss_pred HHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhH
Q 000172 1202 NLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGK 1239 (1935)
Q Consensus 1202 k~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~ 1239 (1935)
..++..|+.+.|+..++..++-.+ ..++++..+|+
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~ 592 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISP---NEIMASDLLKR 592 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCC---CChHHHHHHHH
Confidence 999999999999999987776532 23445555554
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.94 E-value=5.3 Score=50.46 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc----c---
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS----H--- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~----~--- 883 (1935)
.+..++.+..++|.|..|+.+.+..... ...+...-.|..+|.+.++.|.+..+... .
T Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 183 (597)
T 2xpi_A 119 DAFWLAQVYCCTGDYARAKCLLTKEDLY---------------NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE 183 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCGG---------------GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcc---------------ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc
Confidence 3457999999999999999998854210 12245677899999999999988877651 1
Q ss_pred ------------------chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 ------------------KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ------------------~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.....+.-|.+.|++++|+.+|+..++.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 184 KNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp -------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 134678889999999999999999987544
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.34 E-value=13 Score=42.45 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccC--CC----chHHHHHHHHCCChHHHHHHHHHHHhhccCCCch
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQ--SP----LPHLLNLLRAQGQHEMAINLAKYISENYESNEEA 1230 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q--~~----l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~ 1230 (1935)
...|...+.+..+.|++..|...+.++..+....+-.. .. ....+.++...|+.+.|+..++..+...+. .
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~ 269 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ---N 269 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc---c
Confidence 35577778889999999999998877655432111000 00 112689999999999999999877765332 3
Q ss_pred hHHHHHHhHhHHHhhcCChHHHHHhhhchhcc
Q 000172 1231 PDVYRLVGKWLAESRSSNSRIILENYLKPAVS 1262 (1935)
Q Consensus 1231 a~ll~llG~wlaet~~e~~~~I~~~Y~~~Av~ 1262 (1935)
..++..+|.-....+ +.....+ |++.+++
T Consensus 270 ~~~~~~la~~~~~~g--~~~~A~~-~~~~al~ 298 (330)
T 3hym_B 270 ASTYSAIGYIHSLMG--NFENAVD-YFHTALG 298 (330)
T ss_dssp SHHHHHHHHHHHHHT--CHHHHHH-HHHTTTT
T ss_pred hHHHHHHHHHHHHhc--cHHHHHH-HHHHHHc
Confidence 455556665544433 3333333 3444543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.02 E-value=34 Score=38.74 Aligned_cols=78 Identities=13% Similarity=0.029 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHH
Q 000172 1158 QHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLV 1237 (1935)
Q Consensus 1158 ~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~ll 1237 (1935)
..|...+.+..+.|++..|...+.++..+.+.. .......+.++...|+.+.|+..++..+... +....++..+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 310 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN---ASTYSAIGYIHSLMGNFENAVDYFHTALGLR---RDDTFSVTML 310 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHhccHHHHHHHHHHHHccC---CCchHHHHHH
Confidence 456777888999999999999887765543320 0012236899999999999999887555432 2334455555
Q ss_pred hHhH
Q 000172 1238 GKWL 1241 (1935)
Q Consensus 1238 G~wl 1241 (1935)
|.-+
T Consensus 311 ~~~~ 314 (330)
T 3hym_B 311 GHCI 314 (330)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 16
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=84.34 E-value=52 Score=40.01 Aligned_cols=63 Identities=19% Similarity=0.046 Sum_probs=43.8
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1159 HLLESASTLRK---GFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1159 ~wl~~A~laRK---ag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
.|...+....+ .|++..|...+.++..+.+.. .. .....+.++...|+.+.|+..++..+...
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS--EQ-AKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc--HH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 57777888888 899998888877665432210 00 01226888999999999999888776653
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=83.96 E-value=79 Score=37.78 Aligned_cols=114 Identities=11% Similarity=-0.002 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----cc--
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 884 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~~-- 884 (1935)
+..+|.+....|-|..|+-+.+...... | ......-.|..+|...+++|.+.-+... +.
T Consensus 63 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 63 YYRRATVFLAMGKSKAALPDLTKVIQLK--------M------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--------C------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 4568889999999999999999765421 1 1244566788889999988887666541 11
Q ss_pred -----------------hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhcc
Q 000172 885 -----------------LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRK 947 (1935)
Q Consensus 885 -----------------l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~ 947 (1935)
.......|...|+|++|+.+|+..+...|. +..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~ 178 (450)
T 2y4t_A 129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------------------------------DAE 178 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------------------------CHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------ChH
Confidence 012244589999999999999999875432 112
Q ss_pred chhHHHHHHHhhchhhHHHHHh
Q 000172 948 PYKGLMRSLQQVGCMHVLDMYC 969 (1935)
Q Consensus 948 ~~~GlmrcL~~LG~~~~L~~y~ 969 (1935)
....+..++...|.++....+.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~ 200 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDL 200 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH
Confidence 3456777888888765544333
No 18
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=81.00 E-value=4.9 Score=40.48 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
...|....+-|-|..|+-+.+..++.. | ..+...-.+-.+|..+++.+.+.-.... +
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD--------P------ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 357888999999999999998765431 1 2245566788899999999988776542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
..-....-|...|++++|+.+|+..++.+|
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 134677889999999999999999998654
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=79.75 E-value=13 Score=40.72 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......|-|..|+-+++...... | ......-.|..+|...+++|.+.-+... +
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 105 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID--------P------SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA 105 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--------C------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH
Confidence 4578888999999999999998765421 1 1245566788899999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.......-|...|++++|+.+|+..+. .+. .|. .......+..++...|.+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~--------------~~~-------------~~~~~~~la~~~~~~g~~ 157 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTL--------------YPE-------------RSRVFENLGLVSLQMKKP 157 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTT--------------CTT-------------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh-Ccc--------------Ccc-------------cHHHHHHHHHHHHHcCCH
Confidence 123466778999999999999999876 111 121 122345677788888887
Q ss_pred hHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCC
Q 000172 963 HVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 1001 (1935)
Q Consensus 963 ~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~ 1001 (1935)
+....+.+......+ ......-....+....|+|+.
T Consensus 158 ~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 158 AQAKEYFEKSLRLNR---NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCCHHH
Confidence 766555443222111 112222334455666677663
No 20
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=77.98 E-value=5.2 Score=43.58 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=79.2
Q ss_pred cccccCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---
Q 000172 806 YWLSVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--- 882 (1935)
Q Consensus 806 ~wL~Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--- 882 (1935)
.|-+..+..+|......|-|..|+-+++..... .| ......-.+..+|...++++.+..+...
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NK------EDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp ----------------------CCTTHHHHHTT--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------Cc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667788899999999999999999876431 11 1245566788899999999988777642
Q ss_pred --c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHH
Q 000172 883 --H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSL 956 (1935)
Q Consensus 883 --~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL 956 (1935)
+ .......-|...|++++|+.+|+..++..+. +......+..++
T Consensus 86 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~a~~~ 135 (243)
T 2q7f_A 86 LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME------------------------------NGDLFYMLGTVL 135 (243)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC------------------------------SHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHHHHH
Confidence 1 1234667788999999999999998875432 112245677788
Q ss_pred HhhchhhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCCC
Q 000172 957 QQVGCMHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDF 1001 (1935)
Q Consensus 957 ~~LG~~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~ 1001 (1935)
...|.++....+.+...... .......-....+....|+|+.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHH
Confidence 88888777655554322211 1112222233455566676663
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=76.70 E-value=25 Score=40.92 Aligned_cols=65 Identities=15% Similarity=-0.081 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
...|...+.+..+.|++..|...+.++..+.+.. .. .....+.++...|+.+.|+..++..+...
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGY--IR-SRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3567778889999999999999887765543210 00 01226899999999999999988666543
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=75.90 E-value=22 Score=38.39 Aligned_cols=87 Identities=9% Similarity=-0.030 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......+-|..|+-+.+...... + ......-.+..+|...+++|.+.-.... +
T Consensus 60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 60 YINFANLLSSVNELERALAFYDKALELD--------S------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 3467888899999999999998765421 1 1245566788999999999988877642 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
.......-|...|++++|+.+|+..++..
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 12356778899999999999999998754
No 23
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=75.59 E-value=15 Score=37.56 Aligned_cols=87 Identities=14% Similarity=0.051 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......|-|..|+-+++..... .| ......-.+..+|...++++.+.-.... +
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 76 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA--------DA------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT--------TS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--------Cc------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 356788889999999999998864321 11 1244556677888888888877766541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|...|+|++|+.+|+..+...
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 12345667888899999999998887743
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=73.51 E-value=1.2e+02 Score=37.02 Aligned_cols=85 Identities=12% Similarity=-0.103 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCc---hHHHHHHHHC----------CChHHHHHHHHHHHhhc
Q 000172 1158 QHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPL---PHLLNLLRAQ----------GQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1158 ~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l---~~~Ak~LW~~----------Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
..|...+.+..+.|++..|...+.++..+.+........+ ...|.++... |+.+.|+..++..+...
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 3566678889999999999998877655543211001111 1246778887 99999999998777653
Q ss_pred cCCCchhHHHHHHhHhHHHhh
Q 000172 1225 ESNEEAPDVYRLVGKWLAESR 1245 (1935)
Q Consensus 1225 ~~~~~~a~ll~llG~wlaet~ 1245 (1935)
+ ...+++..+|......+
T Consensus 459 p---~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 459 P---RSEQAKIGLAQLKLQME 476 (537)
T ss_dssp T---TCHHHHHHHHHHHHHTT
T ss_pred C---CCHHHHHHHHHHHHHhc
Confidence 3 23456666666555443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=72.87 E-value=63 Score=37.62 Aligned_cols=65 Identities=14% Similarity=-0.124 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
...|...+.+..+.|++..|...+.++..+.+.. .. .....+.++...|+.+.|+..++..+.-.
T Consensus 247 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--IR-SRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--hH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4578888999999999999999987765543321 00 01236889999999999999988666543
No 26
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=72.84 E-value=18 Score=34.48 Aligned_cols=89 Identities=10% Similarity=0.061 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
-+..+|.....-+-|..|+-+.+...... | ......-.+-.+|...++++.+..+... +
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--------P------ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 34578889999999999999998765431 1 1244566788888999998887777541 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
........|.+.|++++|..+|+..+...|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 123566789999999999999999988543
No 27
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=72.66 E-value=19 Score=34.73 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
-+..+|....+.+-|..|+-+.+..+.. .| ......-.+-.+|...+++|.+...... +
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--------NP------KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CT------TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CC------CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 4567899999999999999999876432 11 1245566788899999999988777542 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.......-|.+.|++++|..+|+..+...|
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 123566789999999999999999987544
No 28
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=72.42 E-value=22 Score=37.70 Aligned_cols=85 Identities=8% Similarity=0.004 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......|-|..|+-+.+...... | ......-.|..+|...++++.+.-+... +
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD--------P------KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC--------c------cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 3577889999999999999998765421 1 1244556678888888888877766541 1
Q ss_pred -chhhHHHHHHhh-CCHHHHHHHHHHHHh
Q 000172 884 -KLSSQIVTLEHE-GNWSKALEYYELQVR 910 (1935)
Q Consensus 884 -~l~~~i~~yE~e-g~W~kAL~~Yd~~l~ 910 (1935)
.......-|... |++++|+.+|+..++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 123456677888 999999999988876
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=72.00 E-value=1.1e+02 Score=34.22 Aligned_cols=65 Identities=14% Similarity=-0.060 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhc
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENY 1224 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~ 1224 (1935)
...|...+.+..+.|++..|...+.++..+.+.. .. .....+.++...|+.+.|+..++..+...
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGY--VR-VMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HH-HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4567888889999999999988887665433210 00 01226888899999999999887666543
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=71.28 E-value=28 Score=36.31 Aligned_cols=88 Identities=8% Similarity=0.043 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
|..+|..-.+=|-|..|+-+.+..++. .| ..++..-.|-.+|..++++|.+.-.... +
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~--------~p------~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKA--------DP------NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 557889999999999999999986543 12 2245566788899999999887666541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
........+...+++++|...++..+...|
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 104 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALNT 104 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 123566788899999999999998887543
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=69.14 E-value=29 Score=36.13 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|..-.+-+-|..|+-+.+...... ...+.....+-.++...++++...-.... +
T Consensus 42 ~~~la~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~ 107 (184)
T 3vtx_A 42 LLKLGKTYMDIGLPNDAIESLKKFVVLD--------------TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYA 107 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 3467888888999999999998764321 12244556677788888888776665431 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.......-|.+.|+|++|+.+|+..++.+|. +......+-.++..+|.+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~------------------------------~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG------------------------------FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch------------------------------hhhHHHHHHHHHHHCCCH
Confidence 1345677899999999999999999886543 112355677889999987
Q ss_pred hHHHHHh
Q 000172 963 HVLDMYC 969 (1935)
Q Consensus 963 ~~L~~y~ 969 (1935)
+....+.
T Consensus 158 ~~A~~~~ 164 (184)
T 3vtx_A 158 DEAVKYF 164 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665444
No 32
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=69.09 E-value=26 Score=46.56 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.+..+-|-|..|+-+.+..++.. | ......-.|-.+|.+.++.|.+.-..+. +
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~--------P------~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~ 77 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVF--------P------EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 77 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------S------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4568899999999999999999876431 2 1244566688889999998887766541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.......-|...|++++|+.+|+..++.+|
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P 108 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 134567788999999999999999988644
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=68.44 E-value=36 Score=36.94 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+|......|-|..|+-+.+...... ..+...-.+-.+|...++.|.+.-....
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH---------------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh---------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 4578999999999999999999765421 1245566788888888888887766541
Q ss_pred -------cchhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 883 -------HKLSSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 883 -------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
.........|...|++++|+.+|+..++.
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 11235667889999999999999998874
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=68.14 E-value=2.3e+02 Score=40.41 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc----chh
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH----KLS 886 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~----~l~ 886 (1935)
|...+|..|..-+.|..|....|..- ......+.| +.+++.-|.++-+.... ...
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~------------------~~~~A~~VL---ie~i~nldrAiE~Aervn~p~vWs 1109 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFD------------------VNTSAVQVL---IEHIGNLDRAYEFAERCNEPAVWS 1109 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcC------------------CHHHHHHHH---HHHHhhHHHHHHHHHhcCCHHHHH
Confidence 46679999999999999987777420 001112222 22344444433333211 123
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
.....++..|+|.+|..+|++. . .| +....+..|+..+|.|..+-
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA--d-----------------D~----------------say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA--D-----------------DP----------------SSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc--C-----------------Ch----------------HHHHHHHHHHHHcCCHHHHH
Confidence 4567899999999999999764 1 11 23567899999999998886
Q ss_pred HHhh
Q 000172 967 MYCK 970 (1935)
Q Consensus 967 ~y~~ 970 (1935)
.|.+
T Consensus 1155 eyL~ 1158 (1630)
T 1xi4_A 1155 KYLQ 1158 (1630)
T ss_pred HHHH
Confidence 6664
No 35
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=67.60 E-value=29 Score=33.87 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+...|....+-|-|..|+-+.+..+... | ..+...-.+-.+|..+++.|.+.-.... +
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--------P------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C------CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 4567889999999999999999865431 1 1245566788899999998887766541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
..-....-|...|++++|+.+|+..++.+|+
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcc
Confidence 1345777899999999999999999987754
No 36
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=67.58 E-value=26 Score=36.06 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
-+..+|....+-+-|..|+-+.+..+... | ..+...-.|-.+|..+++.|.+.-.... +
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--------P------ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 35678999999999999999999865431 1 1245667788899999999988776542 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
.......-|.+.|++++|+.+|+..++.+|+
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1346777899999999999999999987653
No 37
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=66.92 E-value=34 Score=32.45 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
..+|......|-|..|+-+.+...... + ......-.+..+|...++++.+...... +
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD--------P------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC--------C------cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 467888889999999999998765321 1 1133455577888888888877666541 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|...|++++|+.+|+..+...
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 12345667899999999999999988743
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=65.82 E-value=1.9e+02 Score=33.11 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=58.5
Q ss_pred HHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc------chhhHH
Q 000172 816 AKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH------KLSSQI 889 (1935)
Q Consensus 816 A~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~------~l~~~i 889 (1935)
.+-+..-|.|..|+-+.+.+.. .+ .+...+..-+|..+|-.++++|.+....... .+....
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~------------~~-p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la 72 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP------------SS-PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFA 72 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC------------CS-HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------CC-chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHH
Confidence 4667888999999999986421 11 0111223456889999999999888765421 134566
Q ss_pred HHHHhhCCHHHHHHHHHHHHhh
Q 000172 890 VTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 890 ~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
.-|...|++++|+..|+..+..
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSR 94 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHS
T ss_pred HHHcCCCcHHHHHHHHHHHHhc
Confidence 6788889999999999988763
No 39
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=65.17 E-value=37 Score=31.95 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......+-|.+|+-+.+...... | ......-.+..+|...++++.+.-+... +
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--------P------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------c------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 4567888999999999999998765321 1 1234556688889999999887766541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
........|.+.|++++|..+|+..++..|
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 123566789999999999999999887543
No 40
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=62.93 E-value=42 Score=34.06 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.....-|-|..|+-+.+...... | ......-.+..+|...++++.+.-.... +
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA--------P------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------C------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH
Confidence 4567888889999999999998765421 1 1244556678889999999887776542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
........|.+.|++++|+.+|+..+...+. .......+..++...|.+
T Consensus 111 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN------------------------------EGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc------------------------------chHHHHHHHHHHHHcCCH
Confidence 1235667899999999999999999875432 112345677788888887
Q ss_pred hHHHHHhh
Q 000172 963 HVLDMYCK 970 (1935)
Q Consensus 963 ~~L~~y~~ 970 (1935)
+....+.+
T Consensus 161 ~~A~~~~~ 168 (186)
T 3as5_A 161 EEALPHFK 168 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66654443
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=60.35 E-value=25 Score=46.66 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.+-.+-|-|..|+-+.+..++-. | ...+..-.|-.+|..+++.|.+.-..+. +
T Consensus 46 ~~nLg~~l~~~g~~~eA~~~~~~Al~l~--------P------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 46 HSNLASVLQQQGKLQEALMHYKEAIRIS--------P------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4568889999999999999999875431 2 2245566788999999999988777642 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.......-|...|++++|+.+|+..++.+|+ +......+..++..+|.|
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~------------------------------~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPD------------------------------FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------------------------CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------ChHHHhhhhhHHHhcccH
Confidence 1346778899999999999999999986543 123456788899999988
Q ss_pred hHHHHHh
Q 000172 963 HVLDMYC 969 (1935)
Q Consensus 963 ~~L~~y~ 969 (1935)
+....+.
T Consensus 162 ~~A~~~~ 168 (723)
T 4gyw_A 162 TDYDERM 168 (723)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 7665443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=60.17 E-value=37 Score=36.80 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-cchhhHHH
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-HKLSSQIV 890 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-~~l~~~i~ 890 (1935)
+..+|.+....+-|..|+-+.+......... .++. .......-.|-.+|...+++|.+.-.... ..+.....
T Consensus 41 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 113 (258)
T 3uq3_A 41 LNNRAAAEYEKGEYETAISTLNDAVEQGREM----RADY---KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD 113 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----TCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCccc----ccch---HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH
Confidence 4578999999999999999999876532110 0000 01134566788899999999987766542 11222345
Q ss_pred HHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHhh
Q 000172 891 TLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYCK 970 (1935)
Q Consensus 891 ~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~~ 970 (1935)
.|.+.|++++|+..|+..+...|. .......+..++...|.++....+.+
T Consensus 114 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 114 ILTKLRNAEKELKKAEAEAYVNPE------------------------------KAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCcc------------------------------hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 577777777777777777664332 11224455666777776666544443
Q ss_pred hcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCCccccchhhhhHHHHHHHhcCCHHHHHHHHHHHHH
Q 000172 971 GLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQNIKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQ 1049 (1935)
Q Consensus 971 gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~~~~~~f~~~L~~aLlAl~~~d~~~f~~~i~~aR~ 1049 (1935)
......+ ......-....+...+|+|+.-..+. ...... .++... .....+......|+++++...++++.+
T Consensus 164 ~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~-~~al~~-~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 164 EMIKRAP---EDARGYSNRAAALAKLMSFPEAIADC-NKAIEK-DPNFVR--AYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHH-CTTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCc---ccHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHh-CHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3222111 11222223445556667766433221 000000 111111 122234455577999999988887754
No 43
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=59.65 E-value=41 Score=39.03 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|....+.|-|..|+-+.+...... | ..+...-.|..+|...+++|.+...... +
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR--------P------NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 3467888899999999999998765421 1 1245667788999999999998877652 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.......-|.+.|++++|+.+|+..+...|... .|.....+. .......+..++..+|.+
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~~-------~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSR------------GPRGEGGAM-------SENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------------------CCCC-------CHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC------------Cccccccch-------hhHHHHHHHHHHHHhCCh
Confidence 134577889999999999999999998766410 010000011 112356778888999987
Q ss_pred hHHHH
Q 000172 963 HVLDM 967 (1935)
Q Consensus 963 ~~L~~ 967 (1935)
+....
T Consensus 347 ~~A~~ 351 (368)
T 1fch_A 347 DAYGA 351 (368)
T ss_dssp GGHHH
T ss_pred HhHHH
Confidence 76643
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=59.42 E-value=66 Score=35.00 Aligned_cols=87 Identities=9% Similarity=-0.067 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-------c-
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------H- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-------~- 883 (1935)
+..+|......|-|..|+-+.+...... | ......-.|..+|...+++|.+.-+... +
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASD--------S------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------c------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc
Confidence 3567888899999999999998765421 1 1244556678888888888877665431 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 ---KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 ---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|...|++++|+.+|+..++..
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 171 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 12345667889999999999999998754
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=59.34 E-value=32 Score=37.54 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----cc--
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK-- 884 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~~-- 884 (1935)
+..+|....+-|-|..|+-+.+..+.. .| ..+...-.|-.+|...+++|.+...... ++
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKE--------NP------QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--------SS------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 456788899999999999999876432 12 2355667788899999999988777542 11
Q ss_pred --hhhHHHHHHhh-----------CCHHHHHHHHHHHHhhhh
Q 000172 885 --LSSQIVTLEHE-----------GNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 885 --l~~~i~~yE~e-----------g~W~kAL~~Yd~~l~~~~ 913 (1935)
......-|... |++++|+..|+..++.+|
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 23456677788 999999999999998654
No 46
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=59.30 E-value=34 Score=34.07 Aligned_cols=87 Identities=7% Similarity=0.014 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.+..+-|-|..|+-+.+..++- .| ..+...--|-.+|..+++.|.+.-.... +
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--------DP------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 457899999999999999999986542 11 1244556678889999999887665431 0
Q ss_pred --------chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 --------KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 --------~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|+..|++++|+.+|+..+...
T Consensus 77 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 77 ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 12235567899999999999999998743
No 47
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=58.86 E-value=2.6e+02 Score=32.27 Aligned_cols=90 Identities=10% Similarity=0.074 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
.+...|....+-|-|..|+-+.+...... | ......-.|-.+|...++.+.+.-+... +
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 132 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD--------P------GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------c------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 47788999999999999999999875431 1 2245667789999999999988777642 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
.......-|.+.|++++|+.+|+..+...|.
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 1345677899999999999999999987654
No 48
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=57.01 E-value=42 Score=32.77 Aligned_cols=90 Identities=4% Similarity=-0.055 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
.+..+|......+-|..|+-+.+..+... | ..+...-.|-.+|...++.|.+.-.... +
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------P------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------c------CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 45688999999999999999998765431 1 1245566788899999999887766541 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
.......-|.+.|++++|+.+|+..+...|.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 1345777899999999999999999987765
No 49
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=57.00 E-value=69 Score=32.07 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
-+..+|......|-|..|+-+.+...... | ......-.+-.+|...++.+.+...... +
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--------P------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 45678999999999999999999765421 1 1244556678889999998887776541 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
........|.+.|++++|..+|+..+...|
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 123566789999999999999999988543
No 50
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=54.26 E-value=37 Score=38.44 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=26.9
Q ss_pred HHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhh
Q 000172 814 RVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGII 880 (1935)
Q Consensus 814 ~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~ 880 (1935)
.+|.+....|-|..|+-+.+...... | ......-.|..+|...++++.+.-..
T Consensus 60 ~l~~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~ 112 (327)
T 3cv0_A 60 SLGLTQAENEKDGLAIIALNHARMLD--------P------KDIAVHAALAVSHTNEHNANAALASL 112 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--------c------CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45566666666666666666543210 0 11233444555566666655554443
No 51
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=53.35 E-value=59 Score=35.38 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhC-----------CCchhhhhhh
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI-----------NEPDSLYGII 880 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~I-----------dEPDa~yGI~ 880 (1935)
+..+|.+..+.|-|..|+-+.+..+.. .| ..+...-.|-.+|... +++|.+.-..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVAR--------TP------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL 107 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence 456888889999999999999876542 12 1244556677888888 7777776655
Q ss_pred hc-----cc----hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhH
Q 000172 881 QS-----HK----LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKG 951 (1935)
Q Consensus 881 ~~-----~~----l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~G 951 (1935)
.. ++ ......-|...|++++|+.+|+..++.+ . +......
T Consensus 108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------------------------------~~~~~~~ 156 (217)
T 2pl2_A 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D------------------------------TPEIRSA 156 (217)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------------------------------CHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c------------------------------chHHHHH
Confidence 41 11 2356678999999999999999998853 2 1122456
Q ss_pred HHHHHHhhchhhHHHHHhh
Q 000172 952 LMRSLQQVGCMHVLDMYCK 970 (1935)
Q Consensus 952 lmrcL~~LG~~~~L~~y~~ 970 (1935)
+-.++..+|.++....+.+
T Consensus 157 la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 7778888888766544443
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=52.81 E-value=65 Score=37.15 Aligned_cols=110 Identities=6% Similarity=-0.059 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c-ch
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-KL 885 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-~l 885 (1935)
+..+|.....-|-|..|+-+++. + ..++..-.+..+|..++++|.+...... + ..
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~-------------~------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 164 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ-------------G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT-------------C------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC-------------C------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence 35677888888888888877753 1 1234556677888888888887776542 1 11
Q ss_pred h-----hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhc
Q 000172 886 S-----SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVG 960 (1935)
Q Consensus 886 ~-----~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG 960 (1935)
. ..+..+...|++++|+..|+..++..|. +.....++-.|+..+|
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~------------------------------~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP------------------------------TLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC------------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC------------------------------cHHHHHHHHHHHHHcC
Confidence 1 1112333458888888888888775322 1123456667788888
Q ss_pred hhhHHHHHhh
Q 000172 961 CMHVLDMYCK 970 (1935)
Q Consensus 961 ~~~~L~~y~~ 970 (1935)
.++....+.+
T Consensus 215 ~~~eA~~~l~ 224 (291)
T 3mkr_A 215 RWEAAEGVLQ 224 (291)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7776654443
No 53
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=52.42 E-value=36 Score=33.66 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
+...+|....+-|-|..|+-+++..+... | ......-.|-.+|...++++.+...... +
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------P------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------P------EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 56788999999999999999999876431 1 1245566788899999999988877652 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
........|.+.|++++|+.+|+..++.+|
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 123566789999999999999999988654
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=52.27 E-value=84 Score=33.05 Aligned_cols=87 Identities=9% Similarity=-0.016 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhC-CCchhhhhhhhc-------c
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI-NEPDSLYGIIQS-------H 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~I-dEPDa~yGI~~~-------~ 883 (1935)
+..+|..-...|-|..|+-+.+...... | ......-.+..+|... ++++.+...... +
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIK--------P------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC--------C------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 3467888889999999999998765421 1 1244556788889999 998887766541 1
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 ----KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 ----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|.+.|++++|+.+|+..++..
T Consensus 111 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12356678999999999999999998754
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=51.64 E-value=55 Score=30.35 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......+-|..|+-+.+...... | ..+...-.+..+|...++.+.+.-.... +
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--------P------HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--------C------CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 3567888999999999999999765421 1 1244556677888888998887766541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|.+.|++++|..+|+..++.+
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 12356778999999999999999988743
No 56
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=51.53 E-value=2.8e+02 Score=30.46 Aligned_cols=87 Identities=9% Similarity=-0.063 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHH
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 1236 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~l 1236 (1935)
...+...|....+.|++..|...+.++....+.........-..+.+++.+|+...|+..++.++...+.++..++++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34567778889999999999999987755432210000001126899999999999999999998877666666777777
Q ss_pred HhHhHHH
Q 000172 1237 VGKWLAE 1243 (1935)
Q Consensus 1237 lG~wlae 1243 (1935)
+|.-...
T Consensus 95 lg~~~~~ 101 (261)
T 3qky_A 95 RAMCYYK 101 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765443
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=48.93 E-value=97 Score=34.00 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-------cc
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-------HK 884 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-------~~ 884 (1935)
....|.....-|-|..|+-+.+...... | ..+...-.|..+|...++++.+.-.... ..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 71 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--------Y------NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--------C------CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------C------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh
Confidence 3467888899999999999999765421 1 1133455677788888888877665431 11
Q ss_pred -----hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhh
Q 000172 885 -----LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQV 959 (1935)
Q Consensus 885 -----l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~L 959 (1935)
.......|...|++++|+.+|+..+...|. .......+-.++..+
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~------------------------------~~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------------------------------RLDMYGQIGSYFYNK 121 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------------------------CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc------------------------------cHHHHHHHHHHHHHc
Confidence 246777899999999999999999886442 112345666777788
Q ss_pred chhhHHHHHh
Q 000172 960 GCMHVLDMYC 969 (1935)
Q Consensus 960 G~~~~L~~y~ 969 (1935)
|.++....+.
T Consensus 122 ~~~~~A~~~~ 131 (272)
T 3u4t_A 122 GNFPLAIQYM 131 (272)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 8776655444
No 58
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=48.61 E-value=1.1e+02 Score=30.59 Aligned_cols=88 Identities=7% Similarity=-0.115 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
..+|....+-|-|..|+-+.+..+.. .| ..+...-.|-.+|...+++|.+...... +
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~--------~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML--------DH------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh--------CC------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 35788888999999999999876542 11 2245566788899999999988777542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
..-....-|...|++++|+.+|+..+...|.
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1235677899999999999999999987653
No 59
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=47.87 E-value=61 Score=39.42 Aligned_cols=86 Identities=8% Similarity=-0.009 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|......|-|..|+-+.+...... | . ....-.|..+|...++++.+.-.... +
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--------~------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 304 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF--------P------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS 304 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC--------C------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--------c------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH
Confidence 4578899999999999999999765421 1 1 45567788999999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
........|...|++++|+.+|+..+...
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 13456778999999999999999998743
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=47.56 E-value=4.5e+02 Score=31.80 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
-+..+|....+.|-|..|+-+.+..+... | ..+...-.|..+|...++.+.+.-.... +
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 92 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD--------P------NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--------C------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 34678999999999999999998765431 1 1245566677788888888777666541 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
.......-|.+.|++++|+..|+ .+..
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~-~~~~ 121 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLS-VLSL 121 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHH-HHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH-HHhc
Confidence 12355667888888888888885 5543
No 61
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=45.59 E-value=2.2e+02 Score=29.83 Aligned_cols=157 Identities=7% Similarity=-0.107 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c--
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-- 883 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-- 883 (1935)
.+..+|.....-|-|..|+-+.+..+ ++.+...-.|-.+|...++.+.+.-.... +
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 35567888889999999999887531 11244566788899999999888766541 1
Q ss_pred --chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhch
Q 000172 884 --KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGC 961 (1935)
Q Consensus 884 --~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~ 961 (1935)
........|...|++++|+.+|+..++..+........ . . .....+. .......+-.++..+|.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~-----~----~~~~~~~----~~~~~~~l~~~~~~~g~ 136 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK-I-----L----GLQFKLF----ACEVLYNIAFMYAKKEE 136 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG-G-----G----TBCCEEE----HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH-H-----h----ccccCcc----chHHHHHHHHHHHHccC
Confidence 13356778999999999999999998854430000000 0 0 0000000 11234566778888998
Q ss_pred hhHHHHHhhhcccccCCCCCCchhhHHHHHHHhcCCCCC
Q 000172 962 MHVLDMYCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWD 1000 (1935)
Q Consensus 962 ~~~L~~y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD 1000 (1935)
++....+.+......+ .......+.+.+..++-..|.
T Consensus 137 ~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~ 173 (213)
T 1hh8_A 137 WKKAEEQLALATSMKS--EPRHSKIDKAMECVWKQKLYE 173 (213)
T ss_dssp HHHHHHHHHHHHTTCC--SGGGGHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCc--ccccchHHHHHHHHHhccccc
Confidence 8777555543322221 112233445566666555554
No 62
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=45.08 E-value=31 Score=34.42 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHH
Q 000172 886 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 965 (1935)
Q Consensus 886 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L 965 (1935)
..+...|-+.|+|++|+.+|+..++.+|. +......+-.|+..+|.++..
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~~~~~~~~~~~~~~~~A 66 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE------------------------------NAILYSNRAACLTKLMEFQRA 66 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHHHhhHHHhhccHHHH
Confidence 35677899999999999999999986543 122355677788888887655
Q ss_pred HH
Q 000172 966 DM 967 (1935)
Q Consensus 966 ~~ 967 (1935)
..
T Consensus 67 ~~ 68 (126)
T 4gco_A 67 LD 68 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 63
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=43.76 E-value=3.5e+02 Score=29.36 Aligned_cols=25 Identities=0% Similarity=-0.122 Sum_probs=13.6
Q ss_pred HHHhcCccHHHHHHHHHhhhccccc
Q 000172 1394 LWFSLSSRQNVIKNMVDTIDEVQSY 1418 (1935)
Q Consensus 1394 LWl~~~~~~~v~~~~~~~~~~vp~~ 1418 (1935)
+....+..+...+.+.+.+..-|..
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCccH
Confidence 3444455555566666666555544
No 64
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=43.45 E-value=84 Score=39.64 Aligned_cols=88 Identities=16% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|....+-|-|..|+-+.+...+. .| ......-.|-.+|...++.|.+.-..+. +
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLAL--------HP------GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT--------ST------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 456788888999999999999876532 11 2245566788899999999988777542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.......-|...|++++|+.+|+..++.+|
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 122 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 134567789999999999999999988643
No 65
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=41.92 E-value=1e+02 Score=32.60 Aligned_cols=97 Identities=6% Similarity=-0.136 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCcc--CC-----cchHHHHHHHHHhhCCCchhhhhhhhc--
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHL--ET-----LPRHIEILVSAVTQINEPDSLYGIIQS-- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~--~~-----~~~~~e~L~~IY~~IdEPDa~yGI~~~-- 882 (1935)
+..+|.....-+-|..|+-+.+..+.... ..++.... .. .....-.|-.+|..+++.+.+.-....
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFI-----HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTT-----TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHh-----cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45678889999999999999987654210 11111000 00 013445677888889998877665431
Q ss_pred ---c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 883 ---H----KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 883 ---~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
+ .+-....-|...|++++|+.+|+..++..|
T Consensus 116 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 1 133567789999999999999999988543
No 66
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=41.02 E-value=39 Score=32.02 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 889 IVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 889 i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
...|...|+|++|+.+|+..++.+|
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p 38 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVETDP 38 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3456677888888888888877544
No 67
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=40.97 E-value=1e+02 Score=31.41 Aligned_cols=87 Identities=13% Similarity=-0.044 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
..+|....+-|-|..|+-+.+..+... | ..+...-.|-.+|..++++|.+.-.... +
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD--------H------YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC--------c------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 457888899999999999998765421 1 2245556788899999999987766542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
..-....-|...|++++|+.+|+..++..|
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 123567789999999999999999998654
No 68
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=40.63 E-value=95 Score=32.27 Aligned_cols=86 Identities=12% Similarity=-0.053 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
..+|.+..+-|-|..|+-+.+..+.. .| ..+...-.|-.+|..+++.|.+.-.... +
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~--------~P------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIY--------DF------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--------CC------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 46788889999999999999876542 11 2355666788999999999988777542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
..-....-|.+.|++++|+.+|+..++..
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 13467788999999999999999999854
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=40.47 E-value=44 Score=41.54 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcch-HHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----cc-
Q 000172 812 YLRVAKSAVICGSY-FTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK- 884 (1935)
Q Consensus 812 ~~~lA~aA~~C~Ay-atALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~~- 884 (1935)
+..+|.+...-+-| ..|+-+++..+... | ......-.|-.+|...+++|.+.-.... +.
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 170 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLE--------P------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK 170 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhC--------C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH
Confidence 45778888899999 99999998765431 1 2245667788888888888887776541 11
Q ss_pred --hhhHHHHHHhh---------CCHHHHHHHHHHHHhhhh
Q 000172 885 --LSSQIVTLEHE---------GNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 885 --l~~~i~~yE~e---------g~W~kAL~~Yd~~l~~~~ 913 (1935)
+.....-|... |+|++|+.+|+..++.+|
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 23455566777 999999999999998644
No 70
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=38.88 E-value=1.2e+02 Score=28.44 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H---- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~---- 883 (1935)
..+|......+-|..|+-+.+...... + ..+...-.+..+|...++++.+.-.... +
T Consensus 39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 104 (136)
T 2fo7_A 39 YNLGNAYYKQGDYDEAIEYYQKALELD--------P------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHC--------C------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 457888888899999999998764321 1 1234456688899999999887666541 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
.......-|.+.|++++|..+|+..+..+
T Consensus 105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 12356677899999999999999988754
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=38.75 E-value=1e+02 Score=28.99 Aligned_cols=86 Identities=10% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.....-+-|..|+-+.+..+... | ..+...-.+-.+|...++++.+.-.... +
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--------P------TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--------C------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence 3567888899999999999998765421 1 1244556678888888888877665431 0
Q ss_pred --------chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 884 --------KLSSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 884 --------~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
........|.+.|++++|..+|+..+..
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1224566799999999999999999874
No 72
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=37.81 E-value=89 Score=32.49 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhCCCchhhhhhhhc--cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCC
Q 000172 859 HIEILVSAVTQINEPDSLYGIIQS--HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSP 936 (1935)
Q Consensus 859 ~~e~L~~IY~~IdEPDa~yGI~~~--~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 936 (1935)
.-+.|.++.+.-.-.+.+.++-.. ..+-.....|.+.|++++|+.+|+..+..+|.
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---------------------- 68 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---------------------- 68 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------------
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------
Confidence 345566666654444444444321 12345667888999999999999999986543
Q ss_pred CcchhhhhhccchhHHHHHHHhhchhhHHHH
Q 000172 937 STSENEMMQRKPYKGLMRSLQQVGCMHVLDM 967 (1935)
Q Consensus 937 ~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 967 (1935)
+.....++-.|+..+|.++....
T Consensus 69 --------~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 69 --------NVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHccHHHHHH
Confidence 12235677788888888765543
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=37.25 E-value=84 Score=32.04 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=67.2
Q ss_pred ccCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c
Q 000172 809 SVDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H 883 (1935)
Q Consensus 809 ~Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~ 883 (1935)
+.-+..+|..-.+-+-|..|+-+.+..++.. | ..+...-.|-.+|...+++|.+.-.... +
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------p------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p 96 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------E------RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 3456688999999999999999999876431 1 2356677789999999999988777642 1
Q ss_pred c----hhhHHHHHHhhCCHHHHHHH-HHHHHhhhh
Q 000172 884 K----LSSQIVTLEHEGNWSKALEY-YELQVRSDV 913 (1935)
Q Consensus 884 ~----l~~~i~~yE~eg~W~kAL~~-Yd~~l~~~~ 913 (1935)
+ ......-|.+.|++++|... ++..++.+|
T Consensus 97 ~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 97 TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 1 23456678899999877665 588887554
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=36.33 E-value=1.7e+02 Score=29.71 Aligned_cols=98 Identities=9% Similarity=-0.026 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHH
Q 000172 1158 QHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLV 1237 (1935)
Q Consensus 1158 ~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~ll 1237 (1935)
..+...|++..+.|++..|...+.++..+.+.. .. .....+.++...|+.+.|+...+..+.-. +..++++..+
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~-a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 105 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PK-AHRFLGLLYELEENTDKAVECYRRSVELN---PTQKDLVLKI 105 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHHcCchHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 346778899999999999999988775554321 00 01226889999999999999988766653 3346677777
Q ss_pred hHhHHHhhcCChHHHHHhhhchhccc
Q 000172 1238 GKWLAESRSSNSRIILENYLKPAVSF 1263 (1935)
Q Consensus 1238 G~wlaet~~e~~~~I~~~Y~~~Av~~ 1263 (1935)
|.-+...+... +-.+.|++.|+++
T Consensus 106 a~~~~~~~~~~--~aa~~~~~~al~l 129 (150)
T 4ga2_A 106 AELLCKNDVTD--GRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHCSSS--SHHHHHHHHHHHH
T ss_pred HHHHHHcCChH--HHHHHHHHHHHHh
Confidence 77666554322 2234555666543
No 75
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=35.77 E-value=57 Score=31.63 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=38.2
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHH
Q 000172 886 SSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVL 965 (1935)
Q Consensus 886 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L 965 (1935)
......|.+.|+|++|+.+|+..++.+|. +......+-.|+..+|.++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~~a~~~~~~~~~~~A 57 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPE------------------------------DARGYSNRAAALAKLMSFPEA 57 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------------ChHHHHHHHHHHHHhcCHHHH
Confidence 45667889999999999999999986442 112355677788888876655
Q ss_pred HHH
Q 000172 966 DMY 968 (1935)
Q Consensus 966 ~~y 968 (1935)
..+
T Consensus 58 ~~~ 60 (126)
T 3upv_A 58 IAD 60 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=35.71 E-value=1.2e+02 Score=35.76 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccC------CcchHHHHHHHHHhhCCCchhhhhhhhc---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLE------TLPRHIEILVSAVTQINEPDSLYGIIQS--- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~------~~~~~~e~L~~IY~~IdEPDa~yGI~~~--- 882 (1935)
+..+|.+..+-+-|..|+-+.+..+.... ..+.+.... ......-.|-.+|..+++.+.+.-....
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-----~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLE-----YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTT-----TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhh-----ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34678888999999999999987764321 010010000 0023455678889999999988776541
Q ss_pred --c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 883 --H----KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 883 --~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
+ .+.....-|...|++++|+.+|+..++.+|
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 1 134677789999999999999999998644
No 77
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=35.70 E-value=1.1e+02 Score=29.19 Aligned_cols=84 Identities=12% Similarity=0.001 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHhH
Q 000172 1160 LLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVGK 1239 (1935)
Q Consensus 1160 wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG~ 1239 (1935)
+...|....+.|++..|...+.++....+.........-..+.++...|+.+.|+..++.++...+.....++++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 45567788889999999998877654333210000001126888999999999999998888776555444666777666
Q ss_pred hHHH
Q 000172 1240 WLAE 1243 (1935)
Q Consensus 1240 wlae 1243 (1935)
....
T Consensus 85 ~~~~ 88 (129)
T 2xev_A 85 SQYG 88 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 78
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=35.52 E-value=1.2e+02 Score=31.20 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHH-HhhCCCc--hhhhhhhhc-----c
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSA-VTQINEP--DSLYGIIQS-----H 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~I-Y~~IdEP--Da~yGI~~~-----~ 883 (1935)
+..+|......+-|..|+-+.+..+... | ..+...-.|-.+ |...+++ |.+...... +
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p------~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLR--------G------ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--------C------SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C------CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence 4578899999999999999999765431 1 124455567777 8888886 665555431 1
Q ss_pred ----chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 ----KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
........|...|++++|..+|+..+...|
T Consensus 113 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 123566789999999999999999988543
No 79
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=35.20 E-value=2.2e+02 Score=28.81 Aligned_cols=81 Identities=7% Similarity=-0.064 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhh-ccchhhHH
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ-SHKLSSQI 889 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~-~~~l~~~i 889 (1935)
-+...|....+-|-|..|+-+.+..+........... -++|+....-.. ........
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~nla 70 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREK----------------------PGEPEWVELDRKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSC----------------------TTSHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCC----------------------CCHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999999888875432100000000 011100000000 01123456
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 890 VTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 890 ~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.-|.+.|+|++|+.+|+..+..+|
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCC
Confidence 678888999999999998887543
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=33.58 E-value=2.3e+02 Score=30.25 Aligned_cols=89 Identities=4% Similarity=-0.078 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+...|.....-|-|..|+-+.+..++.. ++ ......-.+-.+|..+++.|.+.-.... +
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKYSEYLKLT-------NN------QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-------TT------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcc-------CC------CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 4567888999999999999999875431 10 1123344488889999999887666541 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.......-|...|++++|+.+|+..+...|
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 134677789999999999999999998654
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=33.11 E-value=1.3e+02 Score=32.86 Aligned_cols=88 Identities=15% Similarity=-0.001 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.....-|-|..|+-+.+..+... | ..+...-.|-.+|...++.|.+...... +
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR--------P------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC--------C------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence 4578999999999999999999865421 1 1245667788999999999988877652 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.......-|...|++++|+.+|+..++..|
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 134567789999999999999999988543
No 82
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.01 E-value=1.2e+02 Score=34.50 Aligned_cols=89 Identities=4% Similarity=-0.066 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|....+-|-|..|+-+.+..+... | ..+...-.+-.+|..+++.|.+.-.... +
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--------P------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------S------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------C------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 3467888899999999999998765431 1 1245667788999999999988776542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
........|.+.|+|++|+.+|+..++.+|+
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 1346777899999999999999999987765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=32.88 E-value=1.2e+02 Score=32.64 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----cc---
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK--- 884 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~~--- 884 (1935)
..+|.+...-|-|..|+-+.+..+.. .| ......-.|-.+|...++.|.+.-.... +.
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~al~~--------~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 111 (228)
T 4i17_A 46 YNCGVCADNIKKYKEAADYFDIAIKK--------NY------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT 111 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--------TC------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHh--------Cc------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 34799999999999999999986532 11 2245566788999999999988776541 11
Q ss_pred --------hhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 885 --------LSSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 885 --------l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
.......|...|++++|+.+|+..++.
T Consensus 112 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 112 IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 234567889999999999999999874
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=32.79 E-value=1.1e+02 Score=43.48 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc---chhh
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---KLSS 887 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~---~l~~ 887 (1935)
.|..+|.++.+-|.|..|+-|++...... .. +..+. -|.-.|.++++++.+.-..... .+..
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~------~e-------~~Idt--~LafaYAKl~rleele~fI~~~n~ad~~~ 1200 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA------RE-------SYVET--ELIFALAKTNRLAELEEFINGPNNAHIQQ 1200 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc------cc-------ccccH--HHHHHHHhhcCHHHHHHHHhCCCHHHHHH
Confidence 45668999999999999999998753211 00 00111 2777888888888766665432 4567
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHH
Q 000172 888 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDM 967 (1935)
Q Consensus 888 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~ 967 (1935)
....++.+|+|++|..+|...- ....+.+||..+|.++..-.
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA~--------------------------------------ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNVS--------------------------------------NFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhhh--------------------------------------HHHHHHHHHHHhCCHHHHHH
Confidence 8899999999999999998751 13568999999998655543
Q ss_pred H
Q 000172 968 Y 968 (1935)
Q Consensus 968 y 968 (1935)
.
T Consensus 1243 a 1243 (1630)
T 1xi4_A 1243 G 1243 (1630)
T ss_pred H
Confidence 3
No 85
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=31.87 E-value=57 Score=37.84 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=33.1
Q ss_pred ccCCCCCCeEEEecCCCcEEEeecchhh--ccccCCCCCCCCCccccHHHHhh
Q 000172 1757 GLGDRHAMNILIDQATAEVVHIDLGVAF--EQGLMLKTPERVPFRLTRDIIDG 1807 (1935)
Q Consensus 1757 GLGDRH~~NILid~~TG~vvHIDfg~~F--~~g~~l~~pE~VPFRLTrniv~~ 1807 (1935)
-=||-.|+|||++...+.+.=+|||.+- ..+......-..|.=..|++...
T Consensus 152 vH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~ 204 (330)
T 3nsz_A 152 MHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVD 204 (330)
T ss_dssp ECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTT
T ss_pred eeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcC
Confidence 3489999999999866699999999883 22222222223334445666544
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=31.73 E-value=1.2e+02 Score=32.56 Aligned_cols=87 Identities=17% Similarity=0.112 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHH----------------HHHHHhhCCCchhh
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEI----------------LVSAVTQINEPDSL 876 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~----------------L~~IY~~IdEPDa~ 876 (1935)
...|.....-|-|..|+-+++..+..... .++..-. |-.+|...+++|.+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 73 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID--------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH--------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHH
Confidence 45677888889999999999876543100 0112222 88899999999988
Q ss_pred hhhhhc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 877 YGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 877 yGI~~~-----~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.-.... + .......-|...|++++|+.+|+..++.+|
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777642 1 134677789999999999999999998654
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=31.47 E-value=25 Score=43.78 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc---chhh
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH---KLSS 887 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~---~l~~ 887 (1935)
.|..++.+|..-|.|..|.-|.+..... .+.+...-.|+..|.++++.+.+.-+...+ ....
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~---------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~ 127 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK---------------ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ 127 (449)
T ss_dssp -------------------------------------------------------------CHHHHTTTTTCC-------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh---------------CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHH
Confidence 5677888999999999999999864211 011223335777888888888777776543 4677
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 888 QIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 888 ~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
....|-++|+|++|..+|+.. +....+..||-.+|.+...-
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a--------------------------------------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV--------------------------------------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ---------CTTTHHHHHHHT--------------------------------------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh--------------------------------------hhHHHHHHHHHHhccHHHHH
Confidence 888999999999999999843 12467999999999876653
No 88
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.00 E-value=1.4e+02 Score=29.13 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c-c
Q 000172 811 DYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H-K 884 (1935)
Q Consensus 811 d~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~-~ 884 (1935)
.+..+|.....-+-|..|+-+.+..+.. .|+ ........-.+-.+|...++.+.+.-.... + .
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--------DAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--------CCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--------ccc---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 3567899999999999999999876432 110 000134456678889999999887766541 1 1
Q ss_pred ---hhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 885 ---LSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 885 ---l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
......-|.+.|++++|..+|+..+...|
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 23567789999999999999999987543
No 89
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=30.92 E-value=1e+02 Score=38.80 Aligned_cols=55 Identities=7% Similarity=-0.080 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhhc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 858 RHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 858 ~~~e~L~~IY~~IdEPDa~yGI~~~-----~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
...-.|-.+|...++.|.+.-..+. + .......-|...|++++|+.+|+..++.+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 4455566677777777766655431 1 12345667778888888888888887754
No 90
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=30.64 E-value=1.1e+02 Score=31.07 Aligned_cols=79 Identities=16% Similarity=0.043 Sum_probs=50.5
Q ss_pred HHHHHHHHhhCCCchhhhhhhhc---------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCC
Q 000172 860 IEILVSAVTQINEPDSLYGIIQS---------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLP 930 (1935)
Q Consensus 860 ~e~L~~IY~~IdEPDa~yGI~~~---------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p 930 (1935)
.-.+-.+|...++.+.+.-.... ........-|.+.|+|++|+.+|+..++.+|.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---------------- 77 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---------------- 77 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------
Confidence 33455566666666665554431 11345667889999999999999999986543
Q ss_pred CcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHH
Q 000172 931 SVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 968 (1935)
Q Consensus 931 ~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y 968 (1935)
+......+-.++..+|.++....+
T Consensus 78 --------------~~~~~~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 78 --------------YSKAWSRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHccCHHHHHHH
Confidence 112345666778888876655433
No 91
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=29.23 E-value=71 Score=29.67 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=39.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
.....|...|+|++|+.+|+..++..|. +......+-.|+..+|.++...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~lg~~~~~~g~~~~A~ 58 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLITAQPQ------------------------------NPVGYSNKAMALIKLGEYTQAI 58 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC------------------------------CHHHHHHHHHHHHHhcCHHHHH
Confidence 4456788899999999999999886442 1123456777899999887665
Q ss_pred HHhh
Q 000172 967 MYCK 970 (1935)
Q Consensus 967 ~y~~ 970 (1935)
.+.+
T Consensus 59 ~~~~ 62 (111)
T 2l6j_A 59 QMCQ 62 (111)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 92
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=29.21 E-value=1.2e+02 Score=36.59 Aligned_cols=88 Identities=9% Similarity=-0.080 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCC-chhhhhhhhc-----c---
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINE-PDSLYGIIQS-----H--- 883 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdE-PDa~yGI~~~-----~--- 883 (1935)
..++.+-.+-+-|..|+-+.+..+.. .| ......-.+-.+|..++. .+.+.-.... +
T Consensus 101 ~~lg~~~~~~g~~~~Al~~~~~al~l--------~P------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 101 DYFRAVLQRDERSERAFKLTRDAIEL--------NA------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHH--------CT------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHh--------Cc------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 34555556667799999988876542 11 224455667888888885 7776655441 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~ 914 (1935)
....+..-|...|++++|+.+|+..++.+|.
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~ 198 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAK 198 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 1345677888999999999999999986543
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=29.14 E-value=2.1e+02 Score=32.46 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhcc-----c--
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSH-----K-- 884 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~-----~-- 884 (1935)
...+|..+..-|-|..|+-+.+...... | ..+...-.|-.+|...+++|.+....... +
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS--------N------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT--------T------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--------C------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 4578899999999999999998765431 1 22456667889999999999988776531 1
Q ss_pred --hhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 885 --LSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 885 --l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.-.....+...|+.++|...|+..+..+|. +......+-.++...|.+
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------------------------------~~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPE------------------------------DAALATQLALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------------------------------cHHHHHHHHHHHHHcccH
Confidence 112233456677788899999988886443 122356677788888876
Q ss_pred hHHHHHh
Q 000172 963 HVLDMYC 969 (1935)
Q Consensus 963 ~~L~~y~ 969 (1935)
+......
T Consensus 236 ~~A~~~l 242 (287)
T 3qou_A 236 EEALELL 242 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 94
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=29.00 E-value=1.7e+02 Score=30.81 Aligned_cols=87 Identities=11% Similarity=-0.002 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+|....+-|-|..|+-+.+..+... | ......-.|-.+|...++.|.+.-....
T Consensus 40 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 40 CFNIGCMYTILKNMTEAEKAFTRSINRD--------K------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------c------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 4567888889999999999998765431 1 1234556678888888888887666531
Q ss_pred ----------------cchhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 883 ----------------HKLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 883 ----------------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
.........|.+.|++++|+.+|+..++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp EEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 112356778999999999999999998754
No 95
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.98 E-value=70 Score=31.69 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=37.7
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
.....|-+.|+|++|+.+|+..++.+|. +.....++-.|+..+|.++...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~------------------------------~~~~~~nlg~~~~~~~~~~~A~ 62 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS------------------------------NITFYNNKAAVYFEEKKFAECV 62 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------CHHHHHhHHHHHHHhhhHHHHH
Confidence 3456788999999999999999986543 1123456667888888876654
Q ss_pred HHh
Q 000172 967 MYC 969 (1935)
Q Consensus 967 ~y~ 969 (1935)
.++
T Consensus 63 ~~~ 65 (127)
T 4gcn_A 63 QFC 65 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 96
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=28.82 E-value=1.4e+02 Score=28.49 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCC
Q 000172 1158 QHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESN 1227 (1935)
Q Consensus 1158 ~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~ 1227 (1935)
..|...+....+.|++..|...+.++....+.........-..+.++...|+.+.|+..++.++...+..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 4466678888899999999998877655433210000001226899999999999999999888776443
No 97
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=28.75 E-value=2.1e+02 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.9
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
.....|.+.|++++|+.+|+..+...
T Consensus 51 ~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 51 NRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 45567788999999999999888754
No 98
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=28.64 E-value=1.2e+02 Score=36.51 Aligned_cols=102 Identities=5% Similarity=-0.098 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCC-CC-CccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c-
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSP-DF-SHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~-~~-s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~- 883 (1935)
+..+|....+-+-|..|+-+.+..+............ .. ..........--|-.+|.++++++.+.-.... +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 5678888899999999999888766421000000000 00 00011123455677888999998887766541 1
Q ss_pred ---chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 ---KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ---~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.+-....-|...|++++|+.+|+..++..|
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 134567789999999999999999988643
No 99
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=27.97 E-value=19 Score=41.79 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.2
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
=+|-.|+|||++ +|.+.=+|||.+-.
T Consensus 216 HrDlkp~NILl~--~~~vkl~DFG~a~~ 241 (282)
T 1zar_A 216 HGDLSQYNVLVS--EEGIWIIDFPQSVE 241 (282)
T ss_dssp CSCCSTTSEEEE--TTEEEECCCTTCEE
T ss_pred eCCCCHHHEEEE--CCcEEEEECCCCeE
Confidence 379999999999 99999999998753
No 100
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=27.93 E-value=51 Score=33.08 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=18.8
Q ss_pred hhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 886 SSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 886 ~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
......|...|+|++|+.+|+..++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 43 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN 43 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 345556677788888888888777643
No 101
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=27.80 E-value=1.9e+02 Score=27.28 Aligned_cols=82 Identities=10% Similarity=-0.075 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhhCCCchhhhhhhhc-----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCC
Q 000172 858 RHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHG 928 (1935)
Q Consensus 858 ~~~e~L~~IY~~IdEPDa~yGI~~~-----~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~ 928 (1935)
...-.+-.+|...++.+.+...... + .......-|...|++++|+.+|+..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------- 82 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------------- 82 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------------
Confidence 3444567777788888777766541 1 1235667788999999999999999885432
Q ss_pred CCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHHh
Q 000172 929 LPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMYC 969 (1935)
Q Consensus 929 ~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y~ 969 (1935)
.......+-.++..+|.++....+.
T Consensus 83 ----------------~~~~~~~la~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 83 ----------------FIKGYTRKAAALEAMKDYTKAMDVY 107 (133)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------chHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1122455667788888776654444
No 102
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=27.46 E-value=24 Score=40.15 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=21.9
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
=||-+|+|||++. ++.=||||.+-.
T Consensus 194 HrDlkp~NILl~~---~~~liDFG~a~~ 218 (258)
T 1zth_A 194 HADLSEYNIMYID---KVYFIDMGQAVT 218 (258)
T ss_dssp CSSCSTTSEEESS---SEEECCCTTCEE
T ss_pred eCCCCHHHEEEcC---cEEEEECccccc
Confidence 3899999999996 899999998754
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=27.27 E-value=2.6e+02 Score=30.67 Aligned_cols=91 Identities=10% Similarity=-0.031 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhh--------CCCchhhhhhhhc-
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQ--------INEPDSLYGIIQS- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~--------IdEPDa~yGI~~~- 882 (1935)
+..+|.+-.+-|-|..|+-+.+..+... |+. ...+...-.|-.+|.. .+++|.+......
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~--------p~~---~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIY--------QID---PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTC---TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHC--------CCC---chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 4578899999999999999999876532 110 1113334456666666 6666666555431
Q ss_pred ----c-c---h-----------------hhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 883 ----H-K---L-----------------SSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 883 ----~-~---l-----------------~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
+ + . -.....|.+.|+|++|+..|+..+...|
T Consensus 124 l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 124 IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 1 0 1 2346679999999999999999988654
No 104
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=26.08 E-value=1.4e+02 Score=30.27 Aligned_cols=82 Identities=17% Similarity=0.040 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHH
Q 000172 1156 TMQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYR 1235 (1935)
Q Consensus 1156 ~~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~ 1235 (1935)
....|...|....+.|++..|...+.++..+.+.. .. .....+.++...|+.+.|+...+..+.-.+ ..+.++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~-~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SR-FFLGLGACRQAMGQYDLAIHSYSYGAVMDI---XEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HH-HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHH
Confidence 35678888999999999999999887765443310 00 012258889999999999999887665432 2344555
Q ss_pred HHhHhHHH
Q 000172 1236 LVGKWLAE 1243 (1935)
Q Consensus 1236 llG~wlae 1243 (1935)
.+|.-...
T Consensus 94 ~lg~~~~~ 101 (148)
T 2vgx_A 94 HAAECLLQ 101 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=26.08 E-value=2e+02 Score=32.63 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=34.8
Q ss_pred HHHHHHhhCCCchhhhhhhhccchhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 862 ILVSAVTQINEPDSLYGIIQSHKLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 862 ~L~~IY~~IdEPDa~yGI~~~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
--++++.++++|.....+ +.....-|.+.|++++|+.+|+..+.-.+
T Consensus 62 ~al~~~~~~~~~~~~a~~-----~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNT-----YVEAYKCFKSGGNSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHTTCHHHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 345677778877654322 34566779999999999999999988654
No 106
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=25.77 E-value=2e+02 Score=26.13 Aligned_cols=87 Identities=10% Similarity=-0.036 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----cc---
Q 000172 813 LRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----HK--- 884 (1935)
Q Consensus 813 ~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~~--- 884 (1935)
..+|....+-+-|..|+-+.+..+... | ......-.+-.+|...++.|.+...... +.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD--------P------EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC--------C------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC--------c------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch
Confidence 357888888999999999998765421 1 1234456678889999999888777541 11
Q ss_pred ---hhhHHHHHHhh-CCHHHHHHHHHHHHhhhh
Q 000172 885 ---LSSQIVTLEHE-GNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 885 ---l~~~i~~yE~e-g~W~kAL~~Yd~~l~~~~ 913 (1935)
.......|.+. |++++|+.+++..+...|
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 23466788899 999999999999987543
No 107
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=25.70 E-value=1.4e+02 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=21.5
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
.....|...|+|++|+.+|+..++..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~ 36 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD 36 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 45567888999999999999998754
No 108
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=25.51 E-value=2.6e+02 Score=24.48 Aligned_cols=64 Identities=14% Similarity=-0.036 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhh
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISEN 1223 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~ 1223 (1935)
...|...+....+.|++..|...+.+...+.+.. .. .....+.++...|+.+.|+..++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AE-AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HH-HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567777888899999999999887665433210 00 0123689999999999999998876654
No 109
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=25.50 E-value=1.2e+02 Score=33.01 Aligned_cols=81 Identities=9% Similarity=-0.021 Sum_probs=55.0
Q ss_pred cchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----chhhHHHHHH
Q 000172 823 GSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQIVTLE 893 (1935)
Q Consensus 823 ~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~----~l~~~i~~yE 893 (1935)
+-|..|+-+.+...... + . .....+...-.|-.+|...++.|.+...... + ........|.
T Consensus 19 ~~~~~A~~~~~~~~~~~--------~-~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 19 LQQEVILARMEQILASR--------A-L-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp HHHHHHHHHHHHHHTSS--------C-C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcc--------c-c-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 56778888887654320 0 0 0011234556788889999999888776542 1 1345677899
Q ss_pred hhCCHHHHHHHHHHHHhhhh
Q 000172 894 HEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 894 ~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
+.|+|++|+.+|+..+...|
T Consensus 89 ~~~~~~~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDP 108 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HccCHHHHHHHHHHHHhcCc
Confidence 99999999999999988543
No 110
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=25.36 E-value=1.3e+02 Score=37.23 Aligned_cols=87 Identities=8% Similarity=-0.099 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhC---------CCchhhhhhhhc
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQI---------NEPDSLYGIIQS 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~I---------dEPDa~yGI~~~ 882 (1935)
+..+|.+....|-|..|+-+.+..+.. .| .......|-.+|..+ ++.|.+.-....
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p-------~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTH--------CK-------NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT--------CC-------CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--------CC-------CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 457889999999999999999976532 11 135566788888888 777766655431
Q ss_pred -----c----chhhHHHHHHhh--------CCHHHHHHHHHHHHhhhh
Q 000172 883 -----H----KLSSQIVTLEHE--------GNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 883 -----~----~l~~~i~~yE~e--------g~W~kAL~~Yd~~l~~~~ 913 (1935)
+ .......-|... |++++|+.+|+..++.+|
T Consensus 205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 1 123455667777 899999999999998654
No 111
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=25.26 E-value=1.2e+02 Score=35.04 Aligned_cols=77 Identities=10% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHHhhh-----------cccccchhhhhHHHHhhcCCCccccccccHHHHHHHHHHHH
Q 000172 1386 RVVFRLVSLWFSLSSRQNVIKNMVDTID-----------EVQSYKFIPLVYQIASRMGSTKDALGLHNFQFALVSLVKKM 1454 (1935)
Q Consensus 1386 ~~i~RllsLWl~~~~~~~v~~~~~~~~~-----------~vp~~kfl~~lpQL~srL~~~~~~~~~~~f~~~L~~Ll~ri 1454 (1935)
+.++|-++|.|- +.+..|.....+.+. .+..+.-..++|.|+.++++++ ..|+.....++..+
T Consensus 86 Dll~kw~~lr~~-d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k-----~~vR~~~r~il~~l 159 (266)
T 2of3_A 86 DLLLKWCTLRFF-ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAK-----DNMRTSVRDIVNVL 159 (266)
T ss_dssp HHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSS-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHH
Confidence 445666666664 345443332222221 2333334568899999999875 46899999999999
Q ss_pred HHhCCchhHHHHHH
Q 000172 1455 AIDHPYHTIFQLLA 1468 (1935)
Q Consensus 1455 ~~~hP~~~ly~L~a 1468 (1935)
+.-+|...+|..+.
T Consensus 160 ~~v~~~~~v~~~l~ 173 (266)
T 2of3_A 160 SDVVGPLKMTPMLL 173 (266)
T ss_dssp HHHHCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHH
Confidence 98899987777754
No 112
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=25.20 E-value=3.9e+02 Score=25.66 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhccchhhHHHH
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVT 891 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~~l~~~i~~ 891 (1935)
+..+|......+-|..|+-|.+.... ++...+++.... .........
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~-----~~~~~l~~~ 58 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLL----------------------------IAKEFGDKAAER-----IAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHHTCHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------HHHHhCCchHHH-----HHHHHHHHH
Confidence 34677777788888888888875432 222223332221 112345667
Q ss_pred HHhhCCHHHHHHHHHHHHhhhh
Q 000172 892 LEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 892 yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
|...|++++|+.+|+..++..+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHH
Confidence 8889999999999999987654
No 113
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.54 E-value=1.9e+02 Score=27.85 Aligned_cols=79 Identities=6% Similarity=-0.165 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCchhhhhhhhc---------cchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCC
Q 000172 860 IEILVSAVTQINEPDSLYGIIQS---------HKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLP 930 (1935)
Q Consensus 860 ~e~L~~IY~~IdEPDa~yGI~~~---------~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p 930 (1935)
.-.+-.+|...++.+.+...... ........-|.+.|+|++|+.+|+..++.+|.
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---------------- 75 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---------------- 75 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch----------------
Confidence 33455556666666655555431 11245667888999999999999999885432
Q ss_pred CcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHHHH
Q 000172 931 SVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLDMY 968 (1935)
Q Consensus 931 ~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~~y 968 (1935)
+......+-.|+..+|.++....+
T Consensus 76 --------------~~~~~~~l~~~~~~~~~~~~A~~~ 99 (137)
T 3q49_B 76 --------------SVKAHFFLGQCQLEMESYDEAIAN 99 (137)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHHHhhHHHHHHH
Confidence 112345667788888876655433
No 114
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=24.33 E-value=1.2e+02 Score=30.19 Aligned_cols=100 Identities=9% Similarity=-0.007 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHhhhhccccChHHHHHHhHhHHHHHHHhcCccchhhHhH-HhhhcCCCChHhHHHHhhhhhhhHHHhc
Q 000172 100 PCQRELVNVALDNLSQQLQYTTRWKYLEELLGPILFCWVACGVSLIALVEI-RRLFVSDAEPCNFVQYCCHWLLPALVLH 178 (1935)
Q Consensus 100 ~~~~~l~~~vl~~~~~~~~y~~~~~~~~~~l~~l~~~w~~~~~sl~~~~~~-~~l~~~~~~~~~f~~~~~~~l~p~l~~~ 178 (1935)
+.+++++.+|++-|-..+.-.-.-+-+.+.+| +|-..|--. ++. |. .+.+|+..+--.-.=.|+.+
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~----------~S~~~l~r~fk~~-G~--s~~~~~~~~Rl~~A~~lL~~ 69 (120)
T 3mkl_A 3 ALQPNMRTRVCTVINNNIAHEWTLARIASELL----------MSPSLLKKKLREE-ET--SYSQLLTECRMQRALQLIVI 69 (120)
T ss_dssp --CCCHHHHHHHHHHTSTTSCCCHHHHHHHTT----------CCHHHHHHHHHHT-TC--CHHHHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHHHhccCCCCHHHHHHHHC----------cCHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHHHHHc
Confidence 45566777777766666544333344444444 454444332 222 33 77777777655555556544
Q ss_pred CCccchHHHHHHhCCcHHHHHhhhchhHHHhhhhc
Q 000172 179 ADTSNLNWMAKIAREPLADLVKNHFVPIFSISMAW 213 (1935)
Q Consensus 179 ~~~~~~~~~a~~~~~~~~~l~~~~f~~i~~~~~~~ 213 (1935)
. ...+..||..+|-.=..=+-..|-+.+|+.|.-
T Consensus 70 ~-~~si~eIA~~~Gf~~~s~F~r~Fk~~~G~tP~~ 103 (120)
T 3mkl_A 70 H-GFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTE 103 (120)
T ss_dssp T-TCCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHH
T ss_pred C-CCCHHHHHHHHCCCCHHHHHHHHHHHHCcCHHH
Confidence 4 457999999998765666677777777877753
No 115
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=24.15 E-value=2.2e+02 Score=31.44 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+|......|-|..|+-+.+...... .+.. +. + ..........|-.+|...++++.+.-....
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~-~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIR-EKTL-GK-D---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHH-CT-T---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHh-CC-C---ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 4568888889999999999998765432 1100 00 0 011233456688888899998877666431
Q ss_pred ----c----chhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 883 ----H----KLSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 883 ----~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
. ........|...|+|++|+.+|+..+...
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 12346678899999999999999998753
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=23.98 E-value=2.3e+02 Score=34.82 Aligned_cols=97 Identities=11% Similarity=-0.024 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccC------CcchHHHHHHHHHhhCCCchhhhhhhhc---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLE------TLPRHIEILVSAVTQINEPDSLYGIIQS--- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~------~~~~~~e~L~~IY~~IdEPDa~yGI~~~--- 882 (1935)
+...|.+..+-+-|..|+-+.+..+..... .+.+.... ......--|-.+|.++++.+.+.-....
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-----EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-----CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-----cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 446788888999999999999877643210 10010000 0013344577788889998887666541
Q ss_pred --c----chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 883 --H----KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 883 --~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
+ .+-....-|.+.|+|++|+.+|+..++.+|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 1 134677889999999999999999988544
No 117
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=23.27 E-value=2.7e+02 Score=30.10 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS--------- 882 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~--------- 882 (1935)
+..+|..-..-|-|..|+-+.+....... .. .+. + ..........|-.+|...++.|.+......
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~-~~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIRE-KT-LGK-D---HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-TCT-T---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH-HH-cCC-c---chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 45688888999999999999987654321 10 000 0 011233456688888888888887766531
Q ss_pred ----c----chhhHHHHHHhhCCHHHHHHHHHHHHhh
Q 000172 883 ----H----KLSSQIVTLEHEGNWSKALEYYELQVRS 911 (1935)
Q Consensus 883 ----~----~l~~~i~~yE~eg~W~kAL~~Yd~~l~~ 911 (1935)
+ ........|...|++++|+.+|+..+..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0 1235667889999999999999999875
No 118
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=23.17 E-value=8.7e+02 Score=27.66 Aligned_cols=304 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhh----------
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQ---------- 881 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~---------- 881 (1935)
....|.....-|.|..|+-+++..... .-..........-.|-.+|...++++.+.....
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQV----------GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----------CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc----------CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Q ss_pred -----ccchhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHH
Q 000172 882 -----SHKLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSL 956 (1935)
Q Consensus 882 -----~~~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL 956 (1935)
..........|...|++++|+.+|+..+...+. .....+...++
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~ 130 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-------------------------------LNDKVGEARAL 130 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------HTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------------------------cccccchHHHH
Q ss_pred HhhchhhHH-HH--------------------HhhhcccccCCCCCCchhhHHHHHHHhcCCCCCCCccccCCCCCCCCC
Q 000172 957 QQVGCMHVL-DM--------------------YCKGLTSWKGQFQHDPEFTKLQYEAAWRTGNWDFSLPYLGANFPSGQN 1015 (1935)
Q Consensus 957 ~~LG~~~~L-~~--------------------y~~gL~~s~~~~~~~~~~~~l~~eAAWrLgqWD~~~~~~~~~~~~~~~ 1015 (1935)
..+|..... .. |-+.+ ....-+.+.+-..++-.
T Consensus 131 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~-----------~~~~~al~~~~~~~~~~--------------- 184 (406)
T 3sf4_A 131 YNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV-----------DFYEENLSLVTALGDRA--------------- 184 (406)
T ss_dssp HHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH-----------HHHHHHHHHHHHTTCHH---------------
T ss_pred HHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH-----------HHHHHHHHHHHhccCcH---------------
Q ss_pred ccccchhhhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHhHHHHHHHhhhhccCcccc
Q 000172 1016 IKSGHFHENLHSCLTALREGDSEEFYRKLKHSKQELVLSVACASEESTEYIYSAIVKLQILCHLGVAWDIRWKSSGESIN 1095 (1935)
Q Consensus 1016 ~~~~~f~~~L~~aLlAl~~~d~~~f~~~i~~aR~~l~~eLsa~s~ES~~r~Y~~lvrLq~L~ELEei~ei~~k~~~~~~~ 1095 (1935)
........-+......|+++++...++++.. +.......... ...+..+..+..
T Consensus 185 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~-------~~~~~~la~~~~----------- 238 (406)
T 3sf4_A 185 ---AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-----IAKEFGDKAAE-------RRAYSNLGNAYI----------- 238 (406)
T ss_dssp ---HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH-----HHHHTTCHHHH-------HHHHHHHHHHHH-----------
T ss_pred ---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----HHHhcCCcHHH-------HHHHHHHHHHHH-----------
Q ss_pred cccccccccCCCCCccchhhhHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCChHH
Q 000172 1096 IYPEKQKIVSEPVIPTVGQLSWLNTEWSSILKRTQLHMNLLEPFMAFRRVLLQILSCKDFTMQHLLESASTLRKGFRLSQ 1175 (1935)
Q Consensus 1096 ~~~~~~~~~~~~~~~~~~~~~~l~~~W~~rl~~~q~~~e~~epiL~~R~~vl~il~~~e~~~~~wl~~A~laRKag~~~~ 1175 (1935)
..++...-...+++-+...... +........+...|.+..+.|++..
T Consensus 239 ---------------~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 239 ---------------FLGEFETASEYYKKTLLLARQL------------------KDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp ---------------HTTCHHHHHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------HcCChHHHHHHHHHHHHHHHhC------------------cCchHHHHHHHHHHHHHHHhCcHHH
Q ss_pred HHHHHHHhhhccccccccCCCchH-------HHHHHHHCCChHHHHHHHH---HHHhhccCCCchhHHHHHHhHhHHHhh
Q 000172 1176 AAAALHELKCSIFHMIIEQSPLPH-------LLNLLRAQGQHEMAINLAK---YISENYESNEEAPDVYRLVGKWLAESR 1245 (1935)
Q Consensus 1176 A~~aL~~l~~l~~~~~i~q~~l~~-------~Ak~LW~~Ge~~~Ai~~Lq---~l~~~~~~~~~~a~ll~llG~wlaet~ 1245 (1935)
|...+.+...+... ....+. .|.++...|+.+.|+..++ .+............++..+|......+
T Consensus 286 A~~~~~~a~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 286 AIDYHLKHLAIAQE----LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=22.93 E-value=1.7e+02 Score=31.62 Aligned_cols=85 Identities=12% Similarity=-0.032 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHHHh
Q 000172 1159 HLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRLVG 1238 (1935)
Q Consensus 1159 ~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~llG 1238 (1935)
.+...|...-+.|++..|...+.++....+.........-..+..+...|+.+.|+...+.++...+.+...+.++..+|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 45666778889999999999998775533221000000112588999999999999999999888766665566777766
Q ss_pred HhHHH
Q 000172 1239 KWLAE 1243 (1935)
Q Consensus 1239 ~wlae 1243 (1935)
.-..+
T Consensus 86 ~~~~~ 90 (225)
T 2yhc_A 86 LTNMA 90 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 120
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=22.62 E-value=1.2e+02 Score=27.88 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=22.3
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
.+...|.+.|+|++|+..|+..++..|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p 31 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEP 31 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 356678899999999999999988543
No 121
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=22.57 E-value=1e+02 Score=37.25 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.8
Q ss_pred ccCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1757 GLGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1757 GLGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
-=+|-.|+||||+..+|.+.=+|||.+-
T Consensus 163 vHrDlkp~Nill~~~~~~~kL~DFG~a~ 190 (394)
T 4e7w_A 163 CHRDIKPQNLLLDPPSGVLKLIDFGSAK 190 (394)
T ss_dssp ECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred cCCCCCHHHEEEcCCCCcEEEeeCCCcc
Confidence 3479999999999889999999999884
No 122
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=22.56 E-value=3.6e+02 Score=27.71 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=34.3
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhh-chh-------hHHHHHHHHHH
Q 000172 1024 NLHSCLTALREGDSEEFYRKLKHSKQELVLSVACA-SEE-------STEYIYSAIVK 1072 (1935)
Q Consensus 1024 ~L~~aLlAl~~~d~~~f~~~i~~aR~~l~~eLsa~-s~E-------S~~r~Y~~lvr 1072 (1935)
.+.++..++.++|++.....|.+|.+- +.+|... ..| ...+.|..+.+
T Consensus 39 ~l~~A~~ai~~~d~~~k~~~i~KA~~I-i~~L~~sLd~e~GgeiA~nL~~LY~y~~~ 94 (131)
T 3iqc_A 39 FSSQAKRCIENEDIEKKIYYINRVTDI-FTELLNILDYEKGGEVAVYLTGLYTHQIK 94 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHHTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHhcCCccccHHHHHHHHHHHHHHH
Confidence 445778889999999999999999874 4667543 333 34556777765
No 123
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=22.06 E-value=1.2e+02 Score=29.19 Aligned_cols=54 Identities=13% Similarity=-0.090 Sum_probs=0.0
Q ss_pred hHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchhhHHH
Q 000172 887 SQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCMHVLD 966 (1935)
Q Consensus 887 ~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~~~L~ 966 (1935)
.....|...|++++|+.+|+..++..|. +......+-.|+..+|.++...
T Consensus 32 ~lg~~~~~~~~~~~A~~~~~~al~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 32 GLGSTFRTLGEYRKAEAVLANGVKQFPN------------------------------HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------chHHHHHHHHHHHHcCCHHHHH
Q ss_pred HHhh
Q 000172 967 MYCK 970 (1935)
Q Consensus 967 ~y~~ 970 (1935)
.+.+
T Consensus 82 ~~~~ 85 (117)
T 3k9i_A 82 ELLL 85 (117)
T ss_dssp HHHH
T ss_pred HHHH
No 124
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=21.97 E-value=1.1e+02 Score=35.84 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
=||-.|+||||+..+|.+.=+|||.+..
T Consensus 154 H~Dlkp~NIll~~~~~~~kl~Dfg~a~~ 181 (360)
T 3e3p_A 154 HRDIKPHNVLVNEADGTLKLCDFGSAKK 181 (360)
T ss_dssp CSCCCGGGEEEETTTTEEEECCCTTCBC
T ss_pred cCcCCHHHEEEeCCCCcEEEeeCCCcee
Confidence 4789999999998899999999998853
No 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=21.74 E-value=1.3e+02 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=24.0
Q ss_pred hhhHHHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 885 LSSQIVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 885 l~~~i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
+......|-+.|+|++|+.+|+..+...
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~ 41 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRL 41 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567778899999999999999998863
No 126
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=21.53 E-value=5.4e+02 Score=24.60 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhccchhhHHHH
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQIVT 891 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~~l~~~i~~ 891 (1935)
+..+|......|-|..|+-|.+.... ++...++|..... ........
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~----------------------------~~~~~~~~~~~~~-----~~~~l~~~ 98 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLL----------------------------LARQLKDRAVEAQ-----SCYSLGNT 98 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------HHHHhCCcHHHHH-----HHHHHHHH
Confidence 44577777888888888888876432 2333333332211 12345667
Q ss_pred HHhhCCHHHHHHHHHHHHhhhh
Q 000172 892 LEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 892 yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
|...|++++|+.+|+..+...+
T Consensus 99 ~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 99 YTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 8889999999999999887543
No 127
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=21.26 E-value=4.1e+02 Score=30.01 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=29.8
Q ss_pred HHhhCCCchhhhhhhhccchhhHHHHHHhh-CCHHHHHHHHHHHHhhhhh
Q 000172 866 AVTQINEPDSLYGIIQSHKLSSQIVTLEHE-GNWSKALEYYELQVRSDVM 914 (1935)
Q Consensus 866 IY~~IdEPDa~yGI~~~~~l~~~i~~yE~e-g~W~kAL~~Yd~~l~~~~~ 914 (1935)
||...+++.....+ +.....-|+.. |++++|+.+|+..+...+.
T Consensus 106 l~~~~g~~~~~a~~-----~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 106 IFTHRGQFRRGANF-----KFELGEILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHTTCHHHHHHH-----HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHH-----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 44455554433222 34556678886 9999999999999986553
No 128
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=21.17 E-value=3.7e+02 Score=24.48 Aligned_cols=84 Identities=12% Similarity=-0.011 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCc---hhHH
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEE---APDV 1233 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~---~a~l 1233 (1935)
...|...+....+.|++..|.....++..+.+.. .. .....+.++...|+.+.|+..++..+...+.... ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PV-GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 3567888999999999999999887765543321 00 0122689999999999999999877765433211 1445
Q ss_pred HHHHhHhHHH
Q 000172 1234 YRLVGKWLAE 1243 (1935)
Q Consensus 1234 l~llG~wlae 1243 (1935)
+..+|.-...
T Consensus 81 ~~~~~~~~~~ 90 (111)
T 2l6j_A 81 QYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 129
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=21.11 E-value=93 Score=29.89 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=50.3
Q ss_pred cCHHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhccchhhHH
Q 000172 810 VDYLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQSHKLSSQI 889 (1935)
Q Consensus 810 Id~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~~~l~~~i 889 (1935)
-|...+|..+.+-+-|..|..+.|........ ++ . -|.....-+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-----~~-----~----------------------~~~~~~~i~~~L~ 53 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDE-----GE-----I----------------------STIDKVSVLDYLS 53 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----TC-----C----------------------CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhc-----cC-----C----------------------CcccHHHHHHHHH
Confidence 47789999999999999999999987543210 00 0 0111111124445
Q ss_pred HHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 890 VTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 890 ~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
..|-+.|++++|+.+|+..+...|
T Consensus 54 ~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 54 YAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHhcCC
Confidence 678899999999999999988544
No 130
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=20.97 E-value=2.9e+02 Score=25.14 Aligned_cols=80 Identities=11% Similarity=-0.070 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhccCCCchhHHHHH
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYESNEEAPDVYRL 1236 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~~~~~~a~ll~l 1236 (1935)
...|...+..+...|++..|...+.+.....+.. .. .....+.+++..|+.+.|+..++..+...+ ....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~-~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HV-LYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---DWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HH-HHHHHHHHHHhhccHHHHHHHHHHHHHhCc---ccHHHHHH
Confidence 3457778888999999999999887765433210 00 012268899999999999999887766532 23445555
Q ss_pred HhHhHH
Q 000172 1237 VGKWLA 1242 (1935)
Q Consensus 1237 lG~wla 1242 (1935)
+|.-..
T Consensus 78 ~a~~~~ 83 (118)
T 1elw_A 78 KAAALE 83 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 131
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=20.75 E-value=1.4e+02 Score=39.07 Aligned_cols=89 Identities=7% Similarity=-0.031 Sum_probs=44.6
Q ss_pred HHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c----chhhH
Q 000172 818 SAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H----KLSSQ 888 (1935)
Q Consensus 818 aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~----~l~~~ 888 (1935)
.|..-+-|..|+-+.+...+..+....... ....+..-.+-.+|...++.|.+.-.... + .....
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 473 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDF------SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYR 473 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CC------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hcccccCHHHHHHHHHHhhhhccccccccc------ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHH
Confidence 446777788888877765421110000001 11223334455566666666655554431 0 11234
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhhh
Q 000172 889 IVTLEHEGNWSKALEYYELQVRSD 912 (1935)
Q Consensus 889 i~~yE~eg~W~kAL~~Yd~~l~~~ 912 (1935)
..-|...|++++|+..|+..++.+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF 497 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455666666666666666666643
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=20.54 E-value=3.4e+02 Score=26.73 Aligned_cols=66 Identities=9% Similarity=-0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhccccccccCCCchHHHHHHHHCCChHHHHHHHHHHHhhcc
Q 000172 1157 MQHLLESASTLRKGFRLSQAAAALHELKCSIFHMIIEQSPLPHLLNLLRAQGQHEMAINLAKYISENYE 1225 (1935)
Q Consensus 1157 ~~~wl~~A~laRKag~~~~A~~aL~~l~~l~~~~~i~q~~l~~~Ak~LW~~Ge~~~Ai~~Lq~l~~~~~ 1225 (1935)
...|...+....+.|++..|...+.++..+.+.. .. .....+.++...|+.+.|+..++..+...+
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--PR-FPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--cH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567788889999999999999887765543321 00 012268899999999999999886665443
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=20.50 E-value=2.1e+02 Score=37.20 Aligned_cols=113 Identities=14% Similarity=-0.031 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcchHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc-----c---
Q 000172 812 YLRVAKSAVICGSYFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS-----H--- 883 (1935)
Q Consensus 812 ~~~lA~aA~~C~AyatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~-----~--- 883 (1935)
+..+|.+...-|-|..|+-+++..+... | ......-.+-.+|...++.|.+.-..+. +
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 501 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERV--------G------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL 501 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--------C------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccC--------c------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4567888899999999999998765432 1 1244556677888899998888776542 1
Q ss_pred -chhhHHHHHHhhCCHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCCcCCCCCcchhhhhhccchhHHHHHHHhhchh
Q 000172 884 -KLSSQIVTLEHEGNWSKALEYYELQVRSDVMLQMDGNSGALSPHGLPSVHLSPSTSENEMMQRKPYKGLMRSLQQVGCM 962 (1935)
Q Consensus 884 -~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~e~~~~~~~~~~GlmrcL~~LG~~ 962 (1935)
.......-|++.|+|++ +.+|+..++.+|. +...+.++-+++..+|.+
T Consensus 502 ~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~------------------------------~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 502 APKLALAATAELAGNTDE-HKFYQTVWSTNDG------------------------------VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc------------------------------hHHHHHHHHHHHHHcCCH
Confidence 13456778999999999 9999999986543 122356777888888887
Q ss_pred hHHHHHh
Q 000172 963 HVLDMYC 969 (1935)
Q Consensus 963 ~~L~~y~ 969 (1935)
+....+.
T Consensus 551 ~~A~~~~ 557 (681)
T 2pzi_A 551 VGAVRTL 557 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654433
No 134
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.41 E-value=2e+02 Score=34.70 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=63.6
Q ss_pred HHHHHHHHhcc-hHHHhhhhHhhhhhhhccccCCCCCCCccCCcchHHHHHHHHHhhCCCchhhhhhhhc---------c
Q 000172 814 RVAKSAVICGS-YFTSVMYVEHWCEEHYKSLTLGSPDFSHLETLPRHIEILVSAVTQINEPDSLYGIIQS---------H 883 (1935)
Q Consensus 814 ~lA~aA~~C~A-yatALly~E~~~~e~~~~~~~~~~~~s~~~~~~~~~e~L~~IY~~IdEPDa~yGI~~~---------~ 883 (1935)
.+|.+-..-|- |..|+-+++..+... | ......-.+-.+|..+++++.+.-.... .
T Consensus 136 ~~g~~l~~~g~d~~eAl~~~~~al~l~--------P------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~ 201 (382)
T 2h6f_A 136 FRRVLLKSLQKDLHEEMNYITAIIEEQ--------P------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 201 (382)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHC--------T------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHC--------C------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH
Confidence 45666667786 999999998775431 1 2245566688889999999887766542 1
Q ss_pred chhhHHHHHHhhCCHHHHHHHHHHHHhhhh
Q 000172 884 KLSSQIVTLEHEGNWSKALEYYELQVRSDV 913 (1935)
Q Consensus 884 ~l~~~i~~yE~eg~W~kAL~~Yd~~l~~~~ 913 (1935)
....+..-|.+.|+|++|+.+|+..++.+|
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~l~P 231 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 234677788999999999999999998654
No 135
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=20.41 E-value=1.3e+02 Score=35.99 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.5
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
=+|-.|+|||++..+|.+.=+|||.+-
T Consensus 164 H~Dikp~Nil~~~~~~~~kl~Dfg~a~ 190 (383)
T 3eb0_A 164 HRDIKPQNLLVNSKDNTLKLCDFGSAK 190 (383)
T ss_dssp CSCCCGGGEEEETTTTEEEECCCTTCE
T ss_pred cCccCHHHEEEcCCCCcEEEEECCCCc
Confidence 478999999999889999999999884
No 136
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=20.40 E-value=38 Score=37.62 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=22.4
Q ss_pred hhcccCCCCCCeEEEecCCCcEE-Eeecchh
Q 000172 1754 YIVGLGDRHAMNILIDQATAEVV-HIDLGVA 1783 (1935)
Q Consensus 1754 YILGLGDRH~~NILid~~TG~vv-HIDfg~~ 1783 (1935)
..+-=||=||+|||++. |+++ -|||+.+
T Consensus 184 ~~l~HgDl~~~Nil~~~--~~~~~liD~~~a 212 (264)
T 1nd4_A 184 LVVTHGDACLPNIMVEN--GRFSGFIDCGRL 212 (264)
T ss_dssp EEEECSSCCGGGEEEET--TEEEEECCCTTC
T ss_pred eEEECCCCCCCcEEEEC--CcEEEEEcchhc
Confidence 34666999999999974 5665 8999985
No 137
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=20.23 E-value=37 Score=40.69 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=23.3
Q ss_pred cCCCCCCeEEEecCCCcEEEeecchhh
Q 000172 1758 LGDRHAMNILIDQATAEVVHIDLGVAF 1784 (1935)
Q Consensus 1758 LGDRH~~NILid~~TG~vvHIDfg~~F 1784 (1935)
=||-||+|||++. +|.+.=+|||.+-
T Consensus 223 H~Dlkp~NIl~~~-~~~ikl~DfG~~~ 248 (365)
T 2y7j_A 223 HRDLKPENILLDD-NMQIRLSDFGFSC 248 (365)
T ss_dssp CSCCSGGGEEECT-TCCEEECCCTTCE
T ss_pred cCCCCHHHEEECC-CCCEEEEecCccc
Confidence 4899999999996 8999999999764
No 138
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=20.23 E-value=2e+02 Score=33.62 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.4
Q ss_pred ccCCCCCCeEEEecCCCcEEEeecchhhc
Q 000172 1757 GLGDRHAMNILIDQATAEVVHIDLGVAFE 1785 (1935)
Q Consensus 1757 GLGDRH~~NILid~~TG~vvHIDfg~~F~ 1785 (1935)
-=||-+|+|||++. +|.+.=+|||.+-.
T Consensus 134 vH~Dlkp~Nil~~~-~~~~kl~Dfg~a~~ 161 (346)
T 1ua2_A 134 LHRDLKPNNLLLDE-NGVLKLADFGLAKS 161 (346)
T ss_dssp CCCCCCGGGEEECT-TCCEEECCCGGGST
T ss_pred ECCCCCHHHEEEcC-CCCEEEEeccccee
Confidence 45899999999996 89999999998753
Done!