Query 000173
Match_columns 1935
No_of_seqs 683 out of 4655
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 21:53:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1070 rRNA processing protei 100.0 9E-200 2E-204 1852.3 99.5 1624 43-1934 27-1705(1710)
2 KOG1070 rRNA processing protei 100.0 3E-106 6E-111 1011.2 76.3 1471 122-1891 145-1699(1710)
3 COG0539 RpsA Ribosomal protein 100.0 3.6E-63 7.8E-68 603.6 42.5 492 314-835 14-516 (541)
4 COG0539 RpsA Ribosomal protein 100.0 1.5E-58 3.2E-63 563.4 44.9 496 402-945 16-518 (541)
5 PRK12269 bifunctional cytidyla 100.0 7.8E-56 1.7E-60 578.8 47.3 495 313-835 313-829 (863)
6 PRK06299 rpsA 30S ribosomal pr 100.0 1E-54 2.2E-59 567.9 47.5 497 317-835 26-534 (565)
7 TIGR00717 rpsA ribosomal prote 100.0 9.9E-55 2.2E-59 563.7 45.9 490 317-831 14-516 (516)
8 PRK12269 bifunctional cytidyla 100.0 2.7E-54 5.7E-59 564.4 47.9 507 964-1542 315-828 (863)
9 PRK06299 rpsA 30S ribosomal pr 100.0 5.5E-54 1.2E-58 560.9 48.2 508 966-1543 26-534 (565)
10 TIGR00717 rpsA ribosomal prote 100.0 7.7E-53 1.7E-57 546.1 47.1 502 966-1539 14-516 (516)
11 PRK13806 rpsA 30S ribosomal pr 100.0 2.1E-49 4.5E-54 502.3 43.9 418 1060-1541 31-451 (491)
12 PRK13806 rpsA 30S ribosomal pr 100.0 1.1E-47 2.4E-52 486.5 41.4 411 404-833 31-451 (491)
13 PRK07899 rpsA 30S ribosomal pr 100.0 1.6E-42 3.4E-47 430.2 35.9 333 1161-1541 33-365 (486)
14 PRK07899 rpsA 30S ribosomal pr 100.0 1.1E-41 2.3E-46 422.8 34.2 328 493-835 30-367 (486)
15 PRK06676 rpsA 30S ribosomal pr 100.0 1.2E-39 2.6E-44 407.3 34.7 335 487-835 6-351 (390)
16 PRK06676 rpsA 30S ribosomal pr 100.0 6.1E-39 1.3E-43 401.0 36.5 336 1161-1543 15-351 (390)
17 PRK00087 4-hydroxy-3-methylbut 100.0 7.3E-37 1.6E-41 400.9 36.1 336 1160-1542 299-635 (647)
18 PRK00087 4-hydroxy-3-methylbut 100.0 2.2E-36 4.7E-41 396.4 33.3 332 490-835 294-636 (647)
19 PRK07400 30S ribosomal protein 100.0 1.6E-31 3.6E-36 318.9 27.3 240 1257-1543 29-269 (318)
20 PRK07400 30S ribosomal protein 100.0 1.1E-30 2.4E-35 311.8 28.9 243 577-835 22-269 (318)
21 KOG1915 Cell cycle control pro 99.9 2.3E-23 4.9E-28 240.8 28.3 258 1667-1931 189-538 (677)
22 KOG1915 Cell cycle control pro 99.9 7.5E-22 1.6E-26 228.4 25.6 245 1673-1929 60-311 (677)
23 KOG0495 HAT repeat protein [RN 99.8 1.8E-19 4E-24 215.6 28.5 249 1668-1929 532-782 (913)
24 KOG0495 HAT repeat protein [RN 99.8 1.4E-18 3.1E-23 208.1 25.9 235 1668-1914 566-801 (913)
25 KOG2047 mRNA splicing factor [ 99.8 1.9E-17 4E-22 198.8 25.8 263 1665-1932 400-725 (835)
26 KOG2047 mRNA splicing factor [ 99.7 5.9E-16 1.3E-20 186.0 25.2 239 1687-1930 388-652 (835)
27 COG2996 Predicted RNA-bindinin 99.7 8.1E-15 1.8E-19 161.8 23.6 231 583-850 3-237 (287)
28 KOG4626 O-linked N-acetylgluco 99.6 6.3E-15 1.4E-19 175.9 21.4 179 1744-1927 303-483 (966)
29 KOG4626 O-linked N-acetylgluco 99.6 8E-15 1.7E-19 175.0 21.3 253 1669-1928 133-416 (966)
30 TIGR00990 3a0801s09 mitochondr 99.6 9.1E-14 2E-18 185.8 32.9 252 1668-1931 310-573 (615)
31 TIGR00990 3a0801s09 mitochondr 99.6 2E-13 4.4E-18 182.4 34.8 193 1730-1928 336-536 (615)
32 PRK11788 tetratricopeptide rep 99.6 4.6E-13 9.9E-18 169.4 34.9 258 1663-1929 46-311 (389)
33 PRK15174 Vi polysaccharide exp 99.6 2.8E-13 6E-18 180.8 33.5 250 1667-1929 125-381 (656)
34 PRK15174 Vi polysaccharide exp 99.6 6.4E-13 1.4E-17 177.3 35.0 250 1666-1928 90-346 (656)
35 PF05843 Suf: Suppressor of fo 99.6 1.1E-14 2.3E-19 174.0 15.0 135 1795-1932 2-139 (280)
36 PTZ00248 eukaryotic translatio 99.6 8.3E-16 1.8E-20 179.2 1.9 148 1374-1526 12-172 (319)
37 PF13429 TPR_15: Tetratricopep 99.5 2.2E-14 4.7E-19 172.8 13.4 254 1665-1931 21-279 (280)
38 COG1098 VacB Predicted RNA bin 99.5 5.1E-15 1.1E-19 143.9 6.2 75 1465-1541 2-76 (129)
39 TIGR02917 PEP_TPR_lipo putativ 99.5 1.4E-12 3E-17 182.8 32.7 248 1667-1927 650-898 (899)
40 TIGR02917 PEP_TPR_lipo putativ 99.5 1.9E-12 4.2E-17 181.3 33.4 250 1667-1928 480-731 (899)
41 PRK11447 cellulose synthase su 99.5 4.5E-12 9.7E-17 180.5 34.7 200 1665-1868 282-534 (1157)
42 PRK11447 cellulose synthase su 99.5 4.7E-12 1E-16 180.3 34.4 258 1665-1929 364-700 (1157)
43 PRK09782 bacteriophage N4 rece 99.5 4.2E-12 9.1E-17 172.8 31.7 247 1667-1928 491-739 (987)
44 COG2996 Predicted RNA-bindinin 99.5 3.7E-12 8E-17 141.0 23.0 216 1257-1543 3-220 (287)
45 KOG1126 DNA-binding cell divis 99.5 1.5E-12 3.3E-17 160.1 21.6 254 1668-1928 335-619 (638)
46 KOG1914 mRNA cleavage and poly 99.5 9.1E-12 2E-16 148.6 26.4 239 1686-1931 237-503 (656)
47 PRK09782 bacteriophage N4 rece 99.5 2E-11 4.3E-16 166.3 33.2 246 1671-1931 460-708 (987)
48 PRK11788 tetratricopeptide rep 99.4 3.2E-11 7E-16 152.6 30.7 251 1666-1929 83-347 (389)
49 KOG1155 Anaphase-promoting com 99.4 2.3E-11 4.9E-16 143.0 25.6 254 1670-1929 245-536 (559)
50 PF13429 TPR_15: Tetratricopep 99.4 1.4E-12 3.1E-17 157.0 14.7 215 1666-1891 58-276 (280)
51 KOG0547 Translocase of outer m 99.4 3.2E-11 6.9E-16 142.5 24.7 234 1664-1907 338-578 (606)
52 COG1098 VacB Predicted RNA bin 99.4 2.1E-13 4.5E-18 132.9 5.2 77 758-835 2-78 (129)
53 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 1.1E-12 2.4E-17 122.8 8.9 71 1376-1446 1-74 (74)
54 COG3063 PilF Tfp pilus assembl 99.4 5E-11 1.1E-15 130.1 22.8 193 1725-1922 35-229 (250)
55 PRK12370 invasion protein regu 99.4 4.9E-11 1.1E-15 156.9 27.8 240 1669-1922 278-529 (553)
56 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 1.3E-12 2.8E-17 122.4 8.5 71 1466-1537 1-74 (74)
57 cd05693 S1_Rrp5_repeat_hs1_sc1 99.4 1.1E-12 2.4E-17 130.0 8.5 90 131-222 1-100 (100)
58 TIGR00540 hemY_coli hemY prote 99.4 5.2E-10 1.1E-14 142.0 34.9 269 1656-1932 88-402 (409)
59 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.5E-15 133.8 27.2 199 1725-1928 31-231 (234)
60 cd05694 S1_Rrp5_repeat_hs2_sc2 99.4 1.7E-12 3.6E-17 121.4 8.2 71 229-301 1-71 (74)
61 TIGR02521 type_IV_pilW type IV 99.4 2.1E-10 4.5E-15 132.8 27.4 199 1684-1891 29-231 (234)
62 KOG2076 RNA polymerase III tra 99.3 5.4E-10 1.2E-14 141.5 31.6 151 1665-1822 152-309 (895)
63 KOG1258 mRNA processing protei 99.3 3E-10 6.4E-15 139.6 27.9 249 1671-1928 64-394 (577)
64 KOG0547 Translocase of outer m 99.3 1.4E-10 2.9E-15 137.3 23.8 234 1686-1932 326-569 (606)
65 PLN03218 maturation of RBCL 1; 99.3 6.4E-10 1.4E-14 152.8 34.4 251 1668-1927 488-746 (1060)
66 PRK12370 invasion protein regu 99.3 2.8E-10 6.1E-15 149.8 29.6 236 1681-1928 251-501 (553)
67 PF05843 Suf: Suppressor of fo 99.3 1.4E-11 3E-16 147.4 15.6 140 1726-1867 2-145 (280)
68 cd05694 S1_Rrp5_repeat_hs2_sc2 99.3 6.6E-12 1.4E-16 117.4 9.9 71 758-834 1-72 (74)
69 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 5.6E-12 1.2E-16 117.9 8.7 70 1469-1539 1-72 (73)
70 PRK10747 putative protoheme IX 99.3 1.5E-09 3.3E-14 137.0 33.2 230 1687-1931 119-392 (398)
71 PTZ00248 eukaryotic translatio 99.3 1.5E-12 3.3E-17 152.2 4.7 146 493-641 11-171 (319)
72 PRK10049 pgaA outer membrane p 99.3 1E-09 2.3E-14 149.7 32.8 260 1665-1929 129-456 (765)
73 COG3063 PilF Tfp pilus assembl 99.3 6.2E-10 1.3E-14 121.7 24.1 196 1686-1891 35-235 (250)
74 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 1.1E-11 2.4E-16 115.9 9.1 70 1379-1448 1-72 (73)
75 KOG1914 mRNA cleavage and poly 99.3 1E-09 2.2E-14 131.5 27.0 265 1656-1928 23-359 (656)
76 PRK10049 pgaA outer membrane p 99.3 8E-10 1.7E-14 150.9 30.2 253 1666-1929 97-422 (765)
77 KOG1155 Anaphase-promoting com 99.3 1.1E-09 2.3E-14 129.3 26.4 215 1668-1891 278-535 (559)
78 PLN03218 maturation of RBCL 1; 99.3 2.2E-09 4.8E-14 147.6 33.5 251 1668-1928 453-712 (1060)
79 cd04461 S1_Rrp5_repeat_hs8_sc7 99.3 1.2E-11 2.7E-16 119.3 8.4 79 752-830 5-83 (83)
80 KOG1126 DNA-binding cell divis 99.2 1.4E-10 3.1E-15 143.1 18.1 210 1676-1899 411-625 (638)
81 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 2.7E-11 5.9E-16 113.2 8.0 71 1466-1539 1-72 (72)
82 cd05686 S1_pNO40 S1_pNO40: pNO 99.2 4.3E-11 9.3E-16 112.4 9.2 71 1467-1538 2-72 (73)
83 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 3.4E-11 7.4E-16 112.3 8.5 70 762-831 1-70 (70)
84 KOG2396 HAT (Half-A-TPR) repea 99.2 2.2E-09 4.7E-14 128.2 25.2 253 1672-1932 125-562 (568)
85 PF00575 S1: S1 RNA binding do 99.2 8.1E-11 1.8E-15 111.1 10.6 73 759-831 2-74 (74)
86 cd05708 S1_Rrp5_repeat_sc12 S1 99.2 6.9E-11 1.5E-15 112.6 9.5 77 1467-1543 1-77 (77)
87 COG5107 RNA14 Pre-mRNA 3'-end 99.2 1.3E-09 2.8E-14 127.2 21.4 233 1686-1930 261-532 (660)
88 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 8.2E-11 1.8E-15 110.7 9.6 73 1466-1539 1-73 (73)
89 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 6.4E-11 1.4E-15 110.3 8.6 69 1469-1538 1-71 (71)
90 PRK11189 lipoprotein NlpI; Pro 99.2 5.4E-09 1.2E-13 126.7 27.7 203 1673-1891 47-264 (296)
91 KOG1258 mRNA processing protei 99.2 5.1E-09 1.1E-13 129.0 27.2 86 1667-1756 94-180 (577)
92 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 1.4E-10 3E-15 109.2 10.7 73 1376-1448 1-73 (73)
93 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 7.9E-11 1.7E-15 110.1 8.7 71 1376-1448 1-72 (72)
94 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 7.5E-11 1.6E-15 110.0 8.4 70 1469-1539 1-70 (70)
95 PF00575 S1: S1 RNA binding do 99.2 1.5E-10 3.2E-15 109.3 10.1 73 1376-1448 2-74 (74)
96 cd04461 S1_Rrp5_repeat_hs8_sc7 99.2 1.1E-10 2.4E-15 112.7 9.3 78 1370-1447 6-83 (83)
97 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 1.1E-10 2.4E-15 108.5 8.8 69 1469-1538 1-69 (69)
98 COG2956 Predicted N-acetylgluc 99.1 2.4E-08 5.2E-13 113.6 28.7 227 1660-1891 43-277 (389)
99 TIGR00540 hemY_coli hemY prote 99.1 6.7E-09 1.5E-13 131.9 27.2 226 1659-1891 160-398 (409)
100 PRK08582 hypothetical protein; 99.1 1.3E-10 2.9E-15 122.1 9.3 75 1465-1541 2-76 (139)
101 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.2E-10 2.7E-15 107.8 8.0 68 762-829 1-68 (68)
102 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.1 1.8E-10 3.9E-15 107.1 8.7 69 762-830 1-69 (69)
103 PLN03081 pentatricopeptide (PP 99.1 5.8E-09 1.3E-13 141.9 26.4 247 1668-1927 306-555 (697)
104 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.1 2.3E-10 5E-15 106.6 8.8 69 762-830 1-71 (71)
105 KOG2002 TPR-containing nuclear 99.1 1.3E-08 2.8E-13 129.9 27.1 254 1669-1933 147-446 (1018)
106 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.8E-10 4E-15 106.7 8.0 68 1469-1537 1-68 (68)
107 PRK08582 hypothetical protein; 99.1 3.6E-10 7.8E-15 118.9 11.1 79 1376-1455 3-81 (139)
108 PRK11189 lipoprotein NlpI; Pro 99.1 1.4E-08 3E-13 123.1 26.5 219 1700-1929 40-265 (296)
109 cd04452 S1_IF2_alpha S1_IF2_al 99.1 3.8E-10 8.2E-15 107.2 9.7 74 1467-1540 2-76 (76)
110 cd05693 S1_Rrp5_repeat_hs1_sc1 99.1 1.5E-10 3.2E-15 114.9 6.9 77 1376-1452 1-99 (100)
111 PRK07252 hypothetical protein; 99.1 4.5E-10 9.8E-15 114.9 9.7 76 1467-1543 2-77 (120)
112 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 3.9E-10 8.4E-15 104.9 8.3 68 1469-1537 1-69 (69)
113 COG5107 RNA14 Pre-mRNA 3'-end 99.1 2E-08 4.4E-13 117.6 24.0 241 1679-1932 35-365 (660)
114 cd05699 S1_Rrp5_repeat_hs7 S1_ 99.1 3.5E-10 7.7E-15 102.0 7.4 71 670-742 1-72 (72)
115 PRK07252 hypothetical protein; 99.1 6.3E-10 1.4E-14 113.8 10.2 76 760-835 2-77 (120)
116 PLN03081 pentatricopeptide (PP 99.1 9E-09 2E-13 140.1 24.7 243 1667-1928 274-522 (697)
117 KOG1173 Anaphase-promoting com 99.0 1.3E-08 2.9E-13 123.3 22.1 230 1677-1915 303-542 (611)
118 PRK05807 hypothetical protein; 99.0 6.7E-10 1.4E-14 116.6 9.7 74 1465-1541 2-75 (136)
119 KOG2002 TPR-containing nuclear 99.0 1.5E-08 3.2E-13 129.4 23.0 246 1674-1927 402-707 (1018)
120 KOG1173 Anaphase-promoting com 99.0 3.5E-08 7.7E-13 119.7 24.9 250 1667-1928 259-517 (611)
121 cd05708 S1_Rrp5_repeat_sc12 S1 99.0 9.2E-10 2E-14 104.8 9.2 74 760-833 1-75 (77)
122 KOG1129 TPR repeat-containing 99.0 1.2E-08 2.5E-13 115.4 19.1 228 1690-1930 227-459 (478)
123 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 9.1E-10 2E-14 103.7 8.7 71 1469-1540 1-71 (73)
124 cd04452 S1_IF2_alpha S1_IF2_al 99.0 1.3E-09 2.8E-14 103.6 9.7 73 760-832 2-76 (76)
125 cd05690 S1_RPS1_repeat_ec5 S1_ 99.0 7.5E-10 1.6E-14 103.0 7.7 68 762-829 1-69 (69)
126 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 1.2E-09 2.6E-14 102.6 8.9 71 1466-1537 1-72 (72)
127 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 1.1E-09 2.5E-14 100.4 8.3 66 1469-1537 1-66 (66)
128 PRK10747 putative protoheme IX 99.0 7.3E-08 1.6E-12 121.9 26.3 227 1657-1891 158-389 (398)
129 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 1.7E-09 3.8E-14 99.1 8.4 66 762-829 1-66 (66)
130 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 2.6E-09 5.7E-14 100.6 9.8 72 1379-1450 1-72 (73)
131 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 2E-09 4.3E-14 100.4 8.8 70 1469-1539 1-70 (70)
132 cd05686 S1_pNO40 S1_pNO40: pNO 99.0 2.3E-09 5.1E-14 100.6 9.3 70 760-830 2-72 (73)
133 PLN03077 Protein ECB2; Provisi 99.0 1E-07 2.2E-12 133.1 29.6 247 1668-1928 471-719 (857)
134 cd05689 S1_RPS1_repeat_ec4 S1_ 98.9 2.4E-09 5.1E-14 100.5 8.7 71 759-829 1-72 (72)
135 PHA02945 interferon resistance 98.9 2.5E-09 5.3E-14 99.0 8.3 73 1466-1541 9-84 (88)
136 cd05684 S1_DHX8_helicase S1_DH 98.9 3E-09 6.5E-14 101.7 9.3 71 1469-1541 1-74 (79)
137 PRK08059 general stress protei 98.9 2.5E-09 5.5E-14 110.9 9.5 78 1463-1541 2-79 (123)
138 PLN03077 Protein ECB2; Provisi 98.9 6.1E-08 1.3E-12 135.2 26.3 85 1837-1927 532-616 (857)
139 KOG1840 Kinesin light chain [C 98.9 1.5E-07 3.2E-12 118.7 26.7 248 1683-1934 196-484 (508)
140 cd05687 S1_RPS1_repeat_ec1_hs1 98.9 3.7E-09 8E-14 98.6 9.4 70 1379-1448 1-70 (70)
141 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 3.6E-09 7.8E-14 98.3 8.7 69 1469-1539 1-69 (69)
142 KOG0128 RNA-binding protein SA 98.9 6.9E-08 1.5E-12 121.6 22.2 270 1655-1926 152-560 (881)
143 PRK05807 hypothetical protein; 98.9 6.1E-09 1.3E-13 109.4 10.5 74 1376-1451 3-76 (136)
144 KOG1129 TPR repeat-containing 98.9 6.4E-08 1.4E-12 109.5 19.1 196 1729-1928 227-423 (478)
145 PRK08059 general stress protei 98.9 7.7E-09 1.7E-13 107.3 10.6 81 1374-1454 3-83 (123)
146 cd05685 S1_Tex S1_Tex: The C-t 98.9 4.6E-09 9.9E-14 97.3 7.9 68 1469-1537 1-68 (68)
147 cd04465 S1_RPS1_repeat_ec2_hs2 98.9 9E-09 1.9E-13 95.1 8.9 67 762-831 1-67 (67)
148 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 8.4E-09 1.8E-13 95.8 8.7 69 762-831 1-69 (69)
149 KOG1125 TPR repeat-containing 98.9 3.6E-08 7.8E-13 120.4 16.2 217 1665-1891 298-526 (579)
150 KOG2076 RNA polymerase III tra 98.8 5.6E-07 1.2E-11 114.9 27.0 234 1688-1930 141-479 (895)
151 cd05685 S1_Tex S1_Tex: The C-t 98.8 8.1E-09 1.8E-13 95.6 7.7 68 762-829 1-68 (68)
152 cd04465 S1_RPS1_repeat_ec2_hs2 98.8 1.3E-08 2.7E-13 94.1 8.7 67 586-655 1-67 (67)
153 PLN02789 farnesyltranstransfer 98.8 8.8E-07 1.9E-11 107.4 26.6 229 1666-1904 51-311 (320)
154 KOG1125 TPR repeat-containing 98.8 1.6E-07 3.4E-12 114.9 19.8 228 1693-1932 292-530 (579)
155 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.8 1.2E-08 2.5E-13 99.5 8.1 76 1466-1543 4-83 (86)
156 TIGR02696 pppGpp_PNP guanosine 98.8 9.2E-09 2E-13 132.2 9.4 101 1434-1537 611-718 (719)
157 COG1093 SUI2 Translation initi 98.8 5.8E-09 1.3E-13 115.7 6.3 75 1466-1540 9-84 (269)
158 cd05688 S1_RPS1_repeat_ec3 S1_ 98.8 2E-08 4.3E-13 93.1 8.7 68 1468-1537 1-68 (68)
159 PRK15359 type III secretion sy 98.8 1.5E-07 3.2E-12 101.3 16.6 124 1747-1874 13-137 (144)
160 cd04472 S1_PNPase S1_PNPase: P 98.8 2E-08 4.4E-13 93.0 8.6 68 1469-1538 1-68 (68)
161 PRK14574 hmsH outer membrane p 98.8 2.2E-06 4.7E-11 115.5 30.6 252 1666-1928 116-512 (822)
162 cd05684 S1_DHX8_helicase S1_DH 98.8 3.9E-08 8.5E-13 94.1 10.3 72 1379-1452 1-76 (79)
163 TIGR03302 OM_YfiO outer membra 98.8 7.3E-07 1.6E-11 104.6 23.2 188 1682-1891 29-231 (235)
164 cd04471 S1_RNase_R S1_RNase_R: 98.8 3E-08 6.6E-13 95.9 9.4 71 1468-1538 1-82 (83)
165 KOG2003 TPR repeat-containing 98.8 1.1E-06 2.4E-11 102.6 23.3 258 1655-1925 422-685 (840)
166 PLN00207 polyribonucleotide nu 98.7 1.4E-08 3E-13 133.3 8.8 79 1463-1543 748-827 (891)
167 PLN02789 farnesyltranstransfer 98.7 1.8E-06 4E-11 104.6 26.1 201 1683-1891 34-249 (320)
168 cd04472 S1_PNPase S1_PNPase: P 98.7 3.1E-08 6.7E-13 91.8 8.4 68 762-830 1-68 (68)
169 PRK03987 translation initiatio 98.7 2.5E-08 5.4E-13 116.1 9.2 76 1466-1541 6-82 (262)
170 COG2956 Predicted N-acetylgluc 98.7 3.2E-06 6.9E-11 96.7 25.4 222 1698-1928 47-277 (389)
171 smart00316 S1 Ribosomal protei 98.7 5.3E-08 1.1E-12 91.0 9.3 72 1377-1448 1-72 (72)
172 smart00316 S1 Ribosomal protei 98.7 4.5E-08 9.7E-13 91.5 8.8 71 761-831 2-72 (72)
173 KOG1840 Kinesin light chain [C 98.7 6.9E-07 1.5E-11 112.7 22.0 224 1666-1891 213-478 (508)
174 COG2183 Tex Transcriptional ac 98.7 2.1E-08 4.6E-13 127.4 8.0 86 1368-1453 648-733 (780)
175 KOG1128 Uncharacterized conser 98.7 3.3E-07 7.1E-12 114.5 18.1 213 1690-1928 402-615 (777)
176 PRK15179 Vi polysaccharide bio 98.7 6.3E-07 1.4E-11 118.6 22.0 136 1755-1892 81-217 (694)
177 cd04453 S1_RNase_E S1_RNase_E: 98.7 4.6E-08 9.9E-13 94.9 8.5 74 1465-1539 4-82 (88)
178 PRK10370 formate-dependent nit 98.7 5.8E-07 1.3E-11 101.9 18.4 116 1744-1861 56-176 (198)
179 PHA02945 interferon resistance 98.7 7.1E-08 1.5E-12 89.5 8.8 72 1377-1451 10-85 (88)
180 cd04473 S1_RecJ_like S1_RecJ_l 98.7 7.3E-08 1.6E-12 91.5 9.2 67 1462-1538 10-76 (77)
181 TIGR03302 OM_YfiO outer membra 98.7 1.6E-06 3.5E-11 101.7 22.6 165 1761-1926 34-229 (235)
182 PRK15179 Vi polysaccharide bio 98.7 7.5E-07 1.6E-11 117.8 21.7 165 1761-1930 50-218 (694)
183 KOG3060 Uncharacterized conser 98.7 2.9E-06 6.3E-11 94.4 22.5 183 1744-1931 29-222 (289)
184 cd05804 StaR_like StaR_like; a 98.7 1.7E-06 3.7E-11 108.2 24.0 187 1667-1860 21-217 (355)
185 cd05688 S1_RPS1_repeat_ec3 S1_ 98.7 7.1E-08 1.5E-12 89.4 8.5 68 1378-1446 1-68 (68)
186 COG2183 Tex Transcriptional ac 98.7 2.8E-08 6E-13 126.3 7.1 79 1462-1541 652-730 (780)
187 PRK10370 formate-dependent nit 98.6 4.4E-07 9.5E-12 102.9 15.9 118 1773-1892 52-173 (198)
188 KOG1174 Anaphase-promoting com 98.6 4.4E-06 9.5E-11 97.9 23.8 223 1665-1899 245-505 (564)
189 KOG1128 Uncharacterized conser 98.6 2.8E-07 6E-12 115.1 14.8 199 1668-1891 414-615 (777)
190 PRK14574 hmsH outer membrane p 98.6 2.5E-06 5.4E-11 115.0 25.2 199 1680-1888 28-228 (822)
191 KOG0624 dsRNA-activated protei 98.6 8.7E-06 1.9E-10 93.2 25.3 263 1666-1931 86-372 (504)
192 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.6 8.3E-08 1.8E-12 93.5 8.2 75 1376-1451 4-82 (86)
193 PLN00207 polyribonucleotide nu 98.6 6.5E-08 1.4E-12 127.1 9.4 82 1375-1457 750-832 (891)
194 PRK09521 exosome complex RNA-b 98.6 2.3E-07 4.9E-12 104.1 12.0 103 1427-1543 31-145 (189)
195 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 1.3E-07 2.8E-12 91.2 8.5 76 1466-1543 4-79 (82)
196 KOG4162 Predicted calmodulin-b 98.6 9E-06 2E-10 102.6 26.5 250 1671-1931 463-785 (799)
197 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 1.3E-07 2.7E-12 88.2 7.7 63 1469-1532 1-65 (70)
198 KOG0128 RNA-binding protein SA 98.6 6.7E-06 1.5E-10 104.3 25.1 217 1680-1907 141-388 (881)
199 COG1185 Pnp Polyribonucleotide 98.6 6.8E-08 1.5E-12 120.8 7.4 104 1434-1540 585-689 (692)
200 TIGR02552 LcrH_SycD type III s 98.6 1.4E-06 3E-11 92.6 16.6 117 1748-1866 4-122 (135)
201 cd05804 StaR_like StaR_like; a 98.6 2E-05 4.3E-10 98.6 29.6 204 1682-1891 2-214 (355)
202 KOG3060 Uncharacterized conser 98.6 1.3E-05 2.9E-10 89.3 23.9 192 1668-1868 28-230 (289)
203 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 1.8E-07 3.8E-12 87.2 8.1 62 1379-1440 1-64 (70)
204 cd04453 S1_RNase_E S1_RNase_E: 98.6 2.2E-07 4.7E-12 90.3 9.0 75 1375-1449 4-83 (88)
205 cd04473 S1_RecJ_like S1_RecJ_l 98.6 3.9E-07 8.4E-12 86.5 10.1 67 755-830 10-76 (77)
206 cd04471 S1_RNase_R S1_RNase_R: 98.5 3.3E-07 7.2E-12 88.6 9.6 70 1378-1447 1-82 (83)
207 cd04454 S1_Rrp4_like S1_Rrp4_l 98.5 2.8E-07 6.1E-12 88.8 9.0 74 1377-1451 5-78 (82)
208 KOG0624 dsRNA-activated protei 98.5 1.5E-05 3.3E-10 91.3 23.9 217 1666-1891 52-297 (504)
209 PRK11824 polynucleotide phosph 98.5 1.5E-07 3.3E-12 124.9 9.3 77 1463-1541 616-692 (693)
210 TIGR02696 pppGpp_PNP guanosine 98.5 1.7E-07 3.7E-12 120.8 9.4 71 758-829 644-718 (719)
211 PRK03987 translation initiatio 98.5 3.3E-07 7.2E-12 106.7 10.0 78 1376-1453 6-85 (262)
212 PRK15359 type III secretion sy 98.5 1.9E-06 4.2E-11 92.7 15.1 117 1779-1903 12-129 (144)
213 TIGR02552 LcrH_SycD type III s 98.5 2.4E-06 5.1E-11 90.9 15.5 115 1781-1899 4-119 (135)
214 COG1093 SUI2 Translation initi 98.5 1.2E-07 2.5E-12 105.6 5.2 75 761-835 11-87 (269)
215 cd00164 S1_like S1_like: Ribos 98.5 2.5E-07 5.5E-12 84.5 6.7 65 765-829 1-65 (65)
216 KOG2003 TPR repeat-containing 98.5 1.7E-05 3.7E-10 93.1 22.1 214 1668-1891 472-688 (840)
217 cd00164 S1_like S1_like: Ribos 98.5 4E-07 8.7E-12 83.1 7.3 65 1382-1446 1-65 (65)
218 PRK14720 transcript cleavage f 98.4 2.2E-05 4.8E-10 104.6 25.5 211 1681-1900 26-258 (906)
219 cd04460 S1_RpoE S1_RpoE: RpoE, 98.4 7.2E-07 1.6E-11 89.3 8.6 73 1470-1544 1-89 (99)
220 TIGR03591 polynuc_phos polyrib 98.4 5E-07 1.1E-11 119.7 8.7 72 1463-1536 613-684 (684)
221 PF08424 NRDE-2: NRDE-2, neces 98.4 8.7E-06 1.9E-10 99.6 18.9 158 1673-1859 6-184 (321)
222 KOG4162 Predicted calmodulin-b 98.4 3E-05 6.4E-10 98.1 23.5 219 1672-1892 498-783 (799)
223 KOG1174 Anaphase-promoting com 98.4 0.00014 3.1E-09 85.6 26.7 249 1674-1928 220-499 (564)
224 COG3071 HemY Uncharacterized e 98.3 0.00058 1.3E-08 81.3 31.5 251 1665-1930 97-391 (400)
225 PRK11824 polynucleotide phosph 98.3 9.2E-07 2E-11 117.5 9.5 75 757-832 617-691 (693)
226 PRK09521 exosome complex RNA-b 98.3 3.2E-06 6.9E-11 94.9 12.0 74 1374-1450 60-143 (189)
227 COG4783 Putative Zn-dependent 98.3 2.9E-05 6.2E-10 94.3 19.7 130 1760-1891 306-436 (484)
228 PF12569 NARP1: NMDA receptor- 98.3 0.00032 6.9E-09 90.1 30.3 89 1801-1891 201-290 (517)
229 PRK14720 transcript cleavage f 98.3 3E-05 6.6E-10 103.3 21.6 149 1722-1891 28-177 (906)
230 KOG2396 HAT (Half-A-TPR) repea 98.3 1.2E-05 2.6E-10 97.0 16.0 98 1777-1876 88-187 (568)
231 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.3 2.4E-06 5.2E-11 77.6 7.4 62 875-939 1-72 (72)
232 KOG1156 N-terminal acetyltrans 98.2 0.00036 7.8E-09 87.0 27.8 131 1668-1805 91-264 (700)
233 PRK04163 exosome complex RNA-b 98.2 7.4E-06 1.6E-10 94.9 11.7 79 1465-1545 60-142 (235)
234 COG5010 TadD Flp pilus assembl 98.2 0.00016 3.5E-09 81.9 21.0 156 1729-1888 70-227 (257)
235 PRK09202 nusA transcription el 98.2 2.5E-06 5.4E-11 107.2 7.5 107 542-656 86-200 (470)
236 TIGR03591 polynuc_phos polyrib 98.1 3.8E-06 8.2E-11 111.5 8.5 71 757-828 614-684 (684)
237 COG3071 HemY Uncharacterized e 98.1 0.00089 1.9E-08 79.8 26.8 226 1655-1891 156-389 (400)
238 PF12569 NARP1: NMDA receptor- 98.1 0.0004 8.7E-09 89.2 26.2 224 1666-1891 52-333 (517)
239 COG4235 Cytochrome c biogenesi 98.1 5.2E-05 1.1E-09 88.0 16.4 118 1743-1862 138-260 (287)
240 COG4783 Putative Zn-dependent 98.1 0.00021 4.6E-09 87.0 21.7 129 1791-1924 303-432 (484)
241 cd00189 TPR Tetratricopeptide 98.1 2.7E-05 5.8E-10 75.3 12.0 96 1763-1860 3-99 (100)
242 cd04460 S1_RpoE S1_RpoE: RpoE, 98.1 9.2E-06 2E-10 81.3 8.7 75 1380-1455 1-91 (99)
243 PLN03088 SGT1, suppressor of 98.1 4.5E-05 9.8E-10 94.8 16.6 106 1764-1871 6-112 (356)
244 PRK04163 exosome complex RNA-b 98.1 2.7E-05 5.8E-10 90.3 13.3 72 584-656 62-137 (235)
245 KOG1156 N-terminal acetyltrans 98.1 0.00023 4.9E-09 88.7 21.3 216 1668-1891 57-282 (700)
246 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.7E-05 3.6E-10 73.2 8.9 63 1377-1446 2-66 (67)
247 KOG0550 Molecular chaperone (D 98.1 0.00015 3.2E-09 86.0 18.6 259 1668-1929 65-350 (486)
248 KOG1127 TPR repeat-containing 98.1 8.4E-05 1.8E-09 95.7 17.8 191 1726-1926 462-656 (1238)
249 cd04455 S1_NusA S1_NusA: N-uti 98.0 1.7E-05 3.7E-10 73.2 8.5 63 760-829 2-66 (67)
250 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.7E-05 1.9E-09 76.5 14.8 103 1762-1864 4-111 (119)
251 COG5010 TadD Flp pilus assembl 98.0 0.0004 8.6E-09 78.8 20.7 171 1747-1923 53-225 (257)
252 TIGR00448 rpoE DNA-directed RN 98.0 1.5E-05 3.3E-10 88.7 9.6 78 1466-1545 79-172 (179)
253 PF08424 NRDE-2: NRDE-2, neces 98.0 0.0002 4.3E-09 87.8 20.1 147 1782-1930 7-184 (321)
254 COG1185 Pnp Polyribonucleotide 98.0 6.7E-06 1.5E-10 103.5 7.2 104 727-832 584-689 (692)
255 COG1095 RPB7 DNA-directed RNA 98.0 1.3E-05 2.9E-10 85.8 8.0 78 1466-1545 79-172 (183)
256 PRK09202 nusA transcription el 98.0 6.9E-06 1.5E-10 103.3 6.2 118 437-567 72-200 (470)
257 cd00189 TPR Tetratricopeptide 98.0 6.3E-05 1.4E-09 72.6 11.8 94 1796-1891 2-96 (100)
258 PRK10866 outer membrane biogen 98.0 0.0011 2.4E-08 77.8 24.1 184 1685-1890 31-239 (243)
259 PRK15363 pathogenicity island 98.0 0.00022 4.7E-09 76.0 16.0 97 1761-1859 36-133 (157)
260 TIGR02063 RNase_R ribonuclease 98.0 1.6E-05 3.4E-10 107.4 9.6 76 1463-1538 622-708 (709)
261 PF09976 TPR_21: Tetratricopep 97.9 0.00021 4.6E-09 77.1 16.1 118 1772-1890 23-145 (145)
262 KOG0548 Molecular co-chaperone 97.9 0.0015 3.2E-08 80.5 24.2 194 1668-1868 240-465 (539)
263 KOG0553 TPR repeat-containing 97.9 0.00011 2.3E-09 84.8 13.6 130 1768-1899 89-222 (304)
264 COG4700 Uncharacterized protei 97.9 0.00084 1.8E-08 71.6 18.9 141 1750-1891 79-225 (251)
265 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00018 3.9E-09 74.2 14.1 104 1794-1899 2-110 (119)
266 PRK04841 transcriptional regul 97.9 0.002 4.3E-08 91.3 29.2 264 1665-1931 465-762 (903)
267 PLN03088 SGT1, suppressor of 97.9 0.00017 3.8E-09 89.6 16.2 99 1797-1899 5-104 (356)
268 PF13525 YfiO: Outer membrane 97.9 0.0011 2.4E-08 75.8 21.5 176 1686-1883 5-198 (203)
269 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.9 3.7E-05 8E-10 75.4 7.8 75 1466-1541 4-87 (92)
270 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00023 5.1E-09 88.1 16.5 104 1744-1851 186-290 (395)
271 PRK11642 exoribonuclease R; Pr 97.9 3E-05 6.6E-10 104.4 9.4 75 1465-1539 640-725 (813)
272 KOG1127 TPR repeat-containing 97.8 0.00079 1.7E-08 87.1 20.1 182 1701-1891 473-658 (1238)
273 PRK10803 tol-pal system protei 97.8 0.00033 7.1E-09 82.8 15.5 103 1762-1864 145-252 (263)
274 KOG0553 TPR repeat-containing 97.8 0.0011 2.5E-08 76.5 19.0 103 1801-1909 88-191 (304)
275 PRK15363 pathogenicity island 97.8 0.00054 1.2E-08 73.0 15.3 102 1723-1826 33-136 (157)
276 TIGR00358 3_prime_RNase VacB a 97.8 6.1E-05 1.3E-09 100.4 9.5 74 1465-1538 569-653 (654)
277 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.7 8E-05 1.7E-09 73.1 7.8 74 1376-1450 4-87 (92)
278 TIGR01953 NusA transcription t 97.7 8.1E-05 1.7E-09 90.2 9.5 122 714-850 80-209 (341)
279 TIGR00448 rpoE DNA-directed RN 97.7 0.00011 2.5E-09 81.8 9.8 76 1378-1454 81-172 (179)
280 PRK08563 DNA-directed RNA poly 97.7 0.00012 2.5E-09 82.5 9.8 78 1466-1545 79-172 (187)
281 CHL00033 ycf3 photosystem I as 97.7 0.00042 9E-09 76.8 13.9 116 1776-1891 15-141 (168)
282 KOG1067 Predicted RNA-binding 97.7 3E-05 6.6E-10 93.6 5.0 76 756-831 663-738 (760)
283 KOG3617 WD40 and TPR repeat-co 97.7 0.0031 6.7E-08 79.7 22.2 226 1684-1926 755-1048(1416)
284 KOG2376 Signal recognition par 97.7 0.0085 1.8E-07 74.5 25.4 242 1682-1934 106-451 (652)
285 PF13432 TPR_16: Tetratricopep 97.7 0.0001 2.3E-09 67.4 7.0 62 1834-1897 2-63 (65)
286 PRK02603 photosystem I assembl 97.7 0.0009 2E-08 74.5 15.6 83 1796-1878 37-121 (172)
287 PF13414 TPR_11: TPR repeat; P 97.7 0.00018 4E-09 66.6 8.5 62 1830-1891 4-66 (69)
288 PF14938 SNAP: Soluble NSF att 97.7 0.00076 1.6E-08 81.4 16.1 164 1725-1891 35-224 (282)
289 PRK04841 transcriptional regul 97.7 0.01 2.2E-07 84.2 30.1 237 1693-1931 459-722 (903)
290 PF09976 TPR_21: Tetratricopep 97.7 0.0012 2.6E-08 71.3 16.0 134 1775-1927 7-145 (145)
291 PRK11906 transcriptional regul 97.7 0.0012 2.7E-08 81.1 17.7 111 1808-1923 319-430 (458)
292 cd05701 S1_Rrp5_repeat_hs10 S1 97.6 5E-05 1.1E-09 65.5 4.0 59 971-1029 1-60 (69)
293 COG5191 Uncharacterized conser 97.6 5.2E-05 1.1E-09 86.1 5.3 155 1701-1875 32-188 (435)
294 TIGR01953 NusA transcription t 97.6 8.4E-05 1.8E-09 90.0 7.3 108 541-656 82-198 (341)
295 KOG1067 Predicted RNA-binding 97.6 5.1E-05 1.1E-09 91.8 5.1 77 1463-1541 663-739 (760)
296 PRK10803 tol-pal system protei 97.6 0.0007 1.5E-08 80.0 14.6 103 1793-1897 141-249 (263)
297 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0011 2.3E-08 82.4 16.2 124 1761-1889 170-294 (395)
298 KOG2376 Signal recognition par 97.6 0.027 5.8E-07 70.3 27.6 247 1680-1929 168-487 (652)
299 PRK02603 photosystem I assembl 97.6 0.0016 3.4E-08 72.5 16.0 94 1761-1856 36-133 (172)
300 TIGR02063 RNase_R ribonuclease 97.6 0.0002 4.4E-09 96.8 10.2 72 1376-1447 625-708 (709)
301 PRK12327 nusA transcription el 97.5 0.00012 2.5E-09 89.2 6.9 106 542-655 86-199 (362)
302 PRK10153 DNA-binding transcrip 97.5 0.0029 6.4E-08 82.0 20.1 98 1809-1909 400-497 (517)
303 PF14938 SNAP: Soluble NSF att 97.5 0.001 2.2E-08 80.3 15.0 173 1686-1861 35-228 (282)
304 COG3898 Uncharacterized membra 97.5 0.041 8.9E-07 65.3 26.8 219 1696-1928 130-391 (531)
305 KOG3785 Uncharacterized conser 97.5 0.0016 3.4E-08 75.5 15.1 194 1663-1874 33-230 (557)
306 PF13414 TPR_11: TPR repeat; P 97.5 0.00029 6.2E-09 65.4 7.7 66 1793-1860 2-69 (69)
307 COG4235 Cytochrome c biogenesi 97.5 0.0018 4E-08 75.4 15.7 119 1776-1897 138-260 (287)
308 COG0457 NrfG FOG: TPR repeat [ 97.5 0.096 2.1E-06 59.0 30.1 216 1669-1891 40-264 (291)
309 KOG0548 Molecular co-chaperone 97.5 0.011 2.3E-07 73.2 22.7 218 1696-1927 234-487 (539)
310 PF12895 Apc3: Anaphase-promot 97.5 0.00026 5.7E-09 68.5 7.4 81 1808-1889 4-84 (84)
311 cd05700 S1_Rrp5_repeat_hs9 S1_ 97.5 0.00065 1.4E-08 58.0 8.4 64 875-938 1-65 (65)
312 CHL00033 ycf3 photosystem I as 97.5 0.0013 2.8E-08 72.9 13.8 94 1746-1841 18-118 (168)
313 KOG0543 FKBP-type peptidyl-pro 97.5 0.0015 3.3E-08 78.5 14.7 140 1730-1891 213-354 (397)
314 PHA02858 EIF2a-like PKR inhibi 97.5 0.00032 6.8E-09 64.8 6.9 73 1464-1538 12-85 (86)
315 PF13525 YfiO: Outer membrane 97.4 0.011 2.4E-07 67.6 21.1 158 1762-1919 7-197 (203)
316 COG0457 NrfG FOG: TPR repeat [ 97.4 0.061 1.3E-06 60.7 27.3 223 1699-1929 36-265 (291)
317 PF14559 TPR_19: Tetratricopep 97.4 0.00044 9.5E-09 63.9 7.5 52 1840-1891 2-53 (68)
318 PF14559 TPR_19: Tetratricopep 97.4 0.00041 9E-09 64.0 7.3 65 1805-1871 2-67 (68)
319 PF13432 TPR_16: Tetratricopep 97.4 0.00049 1.1E-08 63.0 7.5 61 1800-1862 3-64 (65)
320 PRK10153 DNA-binding transcrip 97.4 0.01 2.2E-07 77.1 22.1 156 1672-1863 323-487 (517)
321 COG5191 Uncharacterized conser 97.4 0.00054 1.2E-08 78.1 9.1 154 1744-1913 34-189 (435)
322 PRK12327 nusA transcription el 97.4 0.00019 4E-09 87.5 5.9 122 715-850 84-211 (362)
323 COG1095 RPB7 DNA-directed RNA 97.4 0.00044 9.5E-09 74.4 7.8 74 1378-1452 81-170 (183)
324 KOG0550 Molecular chaperone (D 97.4 0.0049 1.1E-07 73.6 16.9 163 1690-1861 173-353 (486)
325 PF04733 Coatomer_E: Coatomer 97.4 0.0013 2.9E-08 79.0 12.8 125 1734-1862 140-269 (290)
326 PRK08563 DNA-directed RNA poly 97.3 0.00082 1.8E-08 75.7 9.8 76 1377-1453 80-171 (187)
327 PRK11642 exoribonuclease R; Pr 97.3 0.00057 1.2E-08 92.4 10.0 73 1377-1449 642-726 (813)
328 TIGR00358 3_prime_RNase VacB a 97.3 0.00059 1.3E-08 91.2 10.0 71 1377-1447 571-653 (654)
329 PRK11906 transcriptional regul 97.3 0.0078 1.7E-07 74.4 18.6 176 1679-1855 241-433 (458)
330 PRK10866 outer membrane biogen 97.3 0.04 8.6E-07 64.8 23.3 162 1761-1924 33-236 (243)
331 PF04733 Coatomer_E: Coatomer 97.3 0.0035 7.5E-08 75.5 14.7 146 1750-1899 118-270 (290)
332 PF12688 TPR_5: Tetratrico pep 97.2 0.0082 1.8E-07 62.1 15.0 97 1795-1891 2-103 (120)
333 KOG2053 Mitochondrial inherita 97.2 0.099 2.1E-06 68.4 27.4 217 1668-1891 25-254 (932)
334 PF12895 Apc3: Anaphase-promot 97.2 0.00089 1.9E-08 64.8 7.5 80 1773-1855 2-84 (84)
335 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.2 0.0019 4E-08 62.9 9.3 64 1468-1533 1-75 (88)
336 PF08311 Mad3_BUB1_I: Mad3/BUB 97.2 0.0033 7.3E-08 65.7 11.8 111 1810-1927 2-126 (126)
337 KOG3785 Uncharacterized conser 97.1 0.036 7.9E-07 64.6 19.9 204 1668-1888 73-310 (557)
338 KOG0543 FKBP-type peptidyl-pro 97.1 0.0068 1.5E-07 73.1 14.7 141 1694-1861 216-358 (397)
339 COG1729 Uncharacterized protei 97.1 0.011 2.4E-07 68.4 15.2 104 1762-1866 144-252 (262)
340 PF13371 TPR_9: Tetratricopept 97.0 0.0024 5.3E-08 59.8 8.2 55 1808-1864 10-64 (73)
341 PF13428 TPR_14: Tetratricopep 97.0 0.0012 2.7E-08 55.3 5.4 42 1830-1871 2-43 (44)
342 KOG1585 Protein required for f 97.0 0.067 1.4E-06 60.1 19.9 195 1693-1924 38-251 (308)
343 KOG3617 WD40 and TPR repeat-co 97.0 0.11 2.3E-06 66.6 23.9 224 1691-1931 805-1111(1416)
344 COG4105 ComL DNA uptake lipopr 96.9 0.13 2.8E-06 59.3 22.3 184 1685-1891 33-231 (254)
345 PRK05054 exoribonuclease II; P 96.9 0.0025 5.4E-08 84.8 9.3 72 1467-1538 558-643 (644)
346 PRK15331 chaperone protein Sic 96.8 0.038 8.2E-07 59.5 15.9 95 1768-1865 45-140 (165)
347 KOG4648 Uncharacterized conser 96.8 0.0037 8E-08 72.3 8.8 105 1767-1873 104-209 (536)
348 KOG4234 TPR repeat-containing 96.8 0.016 3.4E-07 62.9 12.9 98 1695-1794 104-202 (271)
349 PF13371 TPR_9: Tetratricopept 96.8 0.0058 1.3E-07 57.2 8.7 61 1767-1827 2-63 (73)
350 PHA02858 EIF2a-like PKR inhibi 96.7 0.0035 7.7E-08 58.1 6.3 69 1377-1447 15-85 (86)
351 COG1096 Predicted RNA-binding 96.7 0.011 2.4E-07 63.9 10.8 75 1463-1540 59-142 (188)
352 cd04462 S1_RNAPII_Rpb7 S1_RNAP 96.7 0.0074 1.6E-07 58.8 8.8 62 1378-1440 1-73 (88)
353 PF08311 Mad3_BUB1_I: Mad3/BUB 96.7 0.024 5.3E-07 59.3 13.0 106 1746-1856 4-126 (126)
354 PF10447 EXOSC1: Exosome compo 96.7 0.0047 1E-07 58.7 6.8 61 1467-1527 3-82 (82)
355 PF12688 TPR_5: Tetratrico pep 96.6 0.032 7E-07 57.7 13.3 93 1727-1821 3-103 (120)
356 PF13512 TPR_18: Tetratricopep 96.6 0.036 7.8E-07 58.4 13.6 100 1764-1863 14-133 (142)
357 COG4785 NlpI Lipoprotein NlpI, 96.6 0.075 1.6E-06 58.6 16.1 124 1724-1852 64-189 (297)
358 COG1107 Archaea-specific RecJ- 96.6 0.011 2.3E-07 73.2 10.6 157 754-937 115-281 (715)
359 COG1097 RRP4 RNA-binding prote 96.5 0.012 2.7E-07 66.2 10.0 73 1377-1450 63-139 (239)
360 KOG3081 Vesicle coat complex C 96.5 0.31 6.7E-06 56.0 20.6 183 1684-1891 105-293 (299)
361 PTZ00162 DNA-directed RNA poly 96.5 0.011 2.5E-07 65.2 9.5 79 1465-1545 78-170 (176)
362 KOG2916 Translation initiation 96.4 0.0023 5E-08 71.4 3.7 75 1466-1540 14-89 (304)
363 PRK15331 chaperone protein Sic 96.4 0.044 9.5E-07 59.0 12.9 96 1725-1822 37-134 (165)
364 COG4700 Uncharacterized protei 96.4 0.35 7.5E-06 52.4 19.1 119 1794-1917 89-210 (251)
365 KOG4555 TPR repeat-containing 96.3 0.045 9.8E-07 55.5 11.7 90 1770-1859 53-145 (175)
366 PRK12328 nusA transcription el 96.3 0.0061 1.3E-07 73.8 6.7 123 714-850 87-217 (374)
367 COG3898 Uncharacterized membra 96.3 1.4 3E-05 53.1 25.2 214 1670-1891 172-391 (531)
368 PF13512 TPR_18: Tetratricopep 96.3 0.071 1.5E-06 56.2 13.4 74 1792-1865 8-83 (142)
369 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.2 0.025 5.5E-07 54.4 8.9 72 1377-1450 5-76 (86)
370 KOG1856 Transcription elongati 96.1 0.0051 1.1E-07 81.2 5.0 77 759-835 983-1062(1299)
371 KOG4555 TPR repeat-containing 96.1 0.058 1.3E-06 54.8 11.1 93 1801-1895 50-147 (175)
372 COG0557 VacB Exoribonuclease R 96.1 0.011 2.4E-07 80.1 8.3 76 1463-1538 617-703 (706)
373 COG1729 Uncharacterized protei 96.1 0.058 1.3E-06 62.6 12.6 88 1804-1891 151-243 (262)
374 PF13428 TPR_14: Tetratricopep 96.0 0.017 3.6E-07 48.5 6.0 42 1761-1802 2-43 (44)
375 COG1107 Archaea-specific RecJ- 96.0 0.024 5.3E-07 70.2 9.6 147 578-737 115-278 (715)
376 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.045 9.7E-07 67.8 12.0 68 1791-1858 72-141 (453)
377 TIGR02062 RNase_B exoribonucle 96.0 0.014 3E-07 77.8 8.3 70 1467-1536 554-637 (639)
378 smart00386 HAT HAT (Half-A-TPR 96.0 0.01 2.2E-07 45.8 4.3 32 1843-1874 1-32 (33)
379 KOG1941 Acetylcholine receptor 95.9 0.79 1.7E-05 54.4 20.5 178 1708-1891 62-274 (518)
380 KOG1941 Acetylcholine receptor 95.8 0.66 1.4E-05 55.0 19.6 241 1690-1932 87-363 (518)
381 PRK05054 exoribonuclease II; P 95.8 0.022 4.8E-07 76.0 9.2 69 762-830 562-643 (644)
382 KOG4234 TPR repeat-containing 95.8 0.097 2.1E-06 57.1 11.8 75 1797-1873 137-212 (271)
383 PTZ00162 DNA-directed RNA poly 95.8 0.026 5.7E-07 62.4 7.9 71 497-568 80-166 (176)
384 KOG2053 Mitochondrial inherita 95.8 1.8 4E-05 57.2 25.1 218 1697-1925 20-251 (932)
385 KOG1856 Transcription elongati 95.8 0.0096 2.1E-07 78.7 5.1 80 1374-1453 981-1063(1299)
386 PRK12328 nusA transcription el 95.7 0.033 7.1E-07 67.7 9.0 107 542-656 90-206 (374)
387 PF13509 S1_2: S1 domain; PDB: 95.7 0.039 8.5E-07 49.8 7.4 61 585-655 1-61 (61)
388 TIGR00757 RNaseEG ribonuclease 95.7 0.021 4.6E-07 71.6 7.8 63 1465-1528 22-98 (414)
389 smart00777 Mad3_BUB1_I Mad3/BU 95.7 0.13 2.7E-06 53.5 12.0 106 1813-1925 5-124 (125)
390 COG1097 RRP4 RNA-binding prote 95.7 0.16 3.5E-06 57.5 13.8 103 542-656 29-138 (239)
391 KOG3081 Vesicle coat complex C 95.5 0.47 1E-05 54.5 16.6 161 1727-1899 109-276 (299)
392 KOG4340 Uncharacterized conser 95.5 0.42 9E-06 55.1 16.0 140 1744-1891 61-206 (459)
393 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.088 1.9E-06 65.3 11.7 62 1761-1822 76-141 (453)
394 TIGR00757 RNaseEG ribonuclease 95.5 0.032 6.8E-07 70.1 8.1 60 1376-1435 23-96 (414)
395 KOG1586 Protein required for f 95.5 2 4.3E-05 48.6 20.7 130 1761-1891 75-223 (288)
396 KOG2471 TPR repeat-containing 95.5 0.94 2E-05 55.6 19.7 121 1684-1806 238-381 (696)
397 KOG2916 Translation initiation 95.4 0.017 3.6E-07 64.8 4.7 90 761-852 16-107 (304)
398 PF13431 TPR_17: Tetratricopep 95.4 0.018 4E-07 45.3 3.6 33 1675-1707 2-34 (34)
399 PF08631 SPO22: Meiosis protei 95.4 8.1 0.00018 46.6 28.1 228 1697-1929 4-275 (278)
400 PF06552 TOM20_plant: Plant sp 95.4 0.11 2.5E-06 56.4 10.6 90 1776-1867 7-118 (186)
401 PF10447 EXOSC1: Exosome compo 95.3 0.041 8.9E-07 52.4 6.3 60 1377-1436 3-82 (82)
402 smart00777 Mad3_BUB1_I Mad3/BU 95.2 0.21 4.6E-06 51.8 11.8 55 1794-1853 69-123 (125)
403 PF02259 FAT: FAT domain; Int 95.2 2.6 5.7E-05 52.4 24.2 119 1791-1912 143-304 (352)
404 PF13509 S1_2: S1 domain; PDB: 95.2 0.051 1.1E-06 49.1 6.2 60 498-566 1-61 (61)
405 COG4105 ComL DNA uptake lipopr 95.1 4.2 9.1E-05 47.2 22.8 157 1761-1920 35-224 (254)
406 COG4785 NlpI Lipoprotein NlpI, 95.0 0.89 1.9E-05 50.5 16.1 161 1742-1930 61-226 (297)
407 cd05790 S1_Rrp40 S1_Rrp40: Rrp 95.0 0.12 2.5E-06 49.9 8.4 71 496-567 4-75 (86)
408 KOG1464 COP9 signalosome, subu 95.0 0.98 2.1E-05 51.5 16.6 204 1669-1877 44-286 (440)
409 KOG3616 Selective LIM binding 94.9 2.4 5.3E-05 54.0 21.2 151 1761-1923 662-847 (1636)
410 PF13424 TPR_12: Tetratricopep 94.8 0.068 1.5E-06 50.7 6.6 62 1830-1891 6-74 (78)
411 COG1096 Predicted RNA-binding 94.7 0.22 4.8E-06 54.2 10.6 104 542-656 26-142 (188)
412 PF06552 TOM20_plant: Plant sp 94.7 0.31 6.7E-06 53.2 11.7 97 1808-1910 6-123 (186)
413 KOG2041 WD40 repeat protein [G 94.7 1.3 2.7E-05 56.4 18.2 186 1678-1888 685-877 (1189)
414 PRK12329 nusA transcription el 94.7 0.12 2.7E-06 63.7 9.7 107 542-655 102-224 (449)
415 COG3118 Thioredoxin domain-con 94.6 1.3 2.9E-05 52.0 17.2 119 1665-1790 147-266 (304)
416 TIGR02062 RNase_B exoribonucle 94.6 0.079 1.7E-06 70.7 8.6 68 762-829 558-638 (639)
417 PF03704 BTAD: Bacterial trans 94.5 0.54 1.2E-05 50.6 13.4 104 1769-1891 15-124 (146)
418 COG3118 Thioredoxin domain-con 94.4 1.7 3.7E-05 51.2 17.5 145 1769-1919 143-291 (304)
419 PF13424 TPR_12: Tetratricopep 94.1 0.13 2.8E-06 48.8 6.7 28 1761-1788 6-33 (78)
420 PF02184 HAT: HAT (Half-A-TPR) 94.1 0.074 1.6E-06 40.6 3.8 13 1879-1891 3-15 (32)
421 KOG1586 Protein required for f 94.1 2.5 5.3E-05 47.9 17.0 123 1742-1864 88-230 (288)
422 KOG1464 COP9 signalosome, subu 94.1 1.1 2.4E-05 51.0 14.5 151 1743-1893 43-221 (440)
423 KOG2610 Uncharacterized conser 94.0 1.7 3.7E-05 51.2 16.3 155 1666-1825 117-280 (491)
424 PF02184 HAT: HAT (Half-A-TPR) 94.0 0.059 1.3E-06 41.1 3.1 30 1844-1874 2-31 (32)
425 PF13431 TPR_17: Tetratricopep 93.8 0.082 1.8E-06 41.6 3.7 32 1852-1883 2-33 (34)
426 COG0557 VacB Exoribonuclease R 93.8 0.16 3.4E-06 69.1 9.0 75 1374-1448 618-704 (706)
427 PF10300 DUF3808: Protein of u 93.5 2.5 5.4E-05 54.8 18.9 162 1767-1932 195-379 (468)
428 PF04184 ST7: ST7 protein; In 93.5 4.1 9E-05 51.1 19.3 181 1698-1899 180-380 (539)
429 PF04184 ST7: ST7 protein; In 93.5 4 8.7E-05 51.2 19.1 99 1830-1929 260-375 (539)
430 KOG3616 Selective LIM binding 93.4 2.1 4.5E-05 54.5 16.6 146 1761-1930 766-912 (1636)
431 PRK12329 nusA transcription el 93.3 0.19 4.1E-06 62.1 7.7 71 232-304 152-229 (449)
432 PF07719 TPR_2: Tetratricopept 93.3 0.2 4.2E-06 39.0 5.3 33 1830-1862 2-34 (34)
433 KOG2796 Uncharacterized conser 93.2 3 6.4E-05 47.9 16.0 131 1690-1826 181-319 (366)
434 KOG0890 Protein kinase of the 93.2 10 0.00022 55.7 24.8 232 1684-1922 1627-1913(2382)
435 KOG1585 Protein required for f 93.2 3.8 8.1E-05 46.7 16.6 127 1761-1888 32-175 (308)
436 KOG4648 Uncharacterized conser 93.2 0.31 6.8E-06 57.0 8.6 106 1799-1909 102-208 (536)
437 smart00386 HAT HAT (Half-A-TPR 93.0 0.16 3.5E-06 38.9 4.4 31 1775-1805 2-32 (33)
438 KOG2796 Uncharacterized conser 93.0 10 0.00022 43.7 19.7 130 1762-1891 179-314 (366)
439 PF02259 FAT: FAT domain; Int 92.9 7.2 0.00016 48.5 21.4 116 1761-1876 147-305 (352)
440 PF10300 DUF3808: Protein of u 92.7 3.3 7.1E-05 53.8 18.2 149 1742-1891 203-375 (468)
441 PF13281 DUF4071: Domain of un 92.3 9.1 0.0002 47.5 20.1 174 1685-1862 140-338 (374)
442 KOG4340 Uncharacterized conser 92.2 1.1 2.5E-05 51.7 11.2 168 1744-1920 27-198 (459)
443 PRK10811 rne ribonuclease E; R 91.2 0.45 9.8E-06 63.5 7.8 69 1377-1445 37-116 (1068)
444 PF00515 TPR_1: Tetratricopept 90.8 0.47 1E-05 37.0 4.8 32 1830-1861 2-33 (34)
445 PF03704 BTAD: Bacterial trans 90.8 4.6 9.9E-05 43.4 14.1 70 1863-1935 62-131 (146)
446 KOG4642 Chaperone-dependent E3 90.5 2.3 4.9E-05 48.3 11.2 99 1772-1872 22-126 (284)
447 KOG1130 Predicted G-alpha GTPa 90.4 26 0.00057 42.8 20.3 182 1697-1891 28-263 (639)
448 KOG0545 Aryl-hydrocarbon recep 90.2 6 0.00013 45.1 14.1 67 1761-1827 231-298 (329)
449 KOG0530 Protein farnesyltransf 89.9 7.8 0.00017 44.8 14.8 191 1715-1914 35-236 (318)
450 PF04910 Tcf25: Transcriptiona 89.7 12 0.00025 47.0 18.0 175 1672-1863 26-227 (360)
451 KOG0985 Vesicle coat protein c 89.6 33 0.00072 46.4 21.8 45 1866-1913 1282-1326(1666)
452 PF13174 TPR_6: Tetratricopept 89.5 0.56 1.2E-05 36.0 4.2 32 1831-1862 2-33 (33)
453 PF10345 Cohesin_load: Cohesin 89.2 26 0.00057 47.3 22.4 181 1703-1886 38-248 (608)
454 PF07719 TPR_2: Tetratricopept 89.2 0.86 1.9E-05 35.3 5.0 31 1795-1825 2-33 (34)
455 PF13281 DUF4071: Domain of un 89.0 26 0.00055 43.7 19.8 128 1761-1891 180-333 (374)
456 KOG2610 Uncharacterized conser 88.3 19 0.00041 42.9 16.8 142 1747-1890 123-274 (491)
457 PF10602 RPN7: 26S proteasome 87.9 7.4 0.00016 43.5 13.2 100 1761-1860 37-144 (177)
458 COG2909 MalT ATP-dependent tra 87.6 56 0.0012 44.3 22.4 236 1685-1925 414-684 (894)
459 PF00515 TPR_1: Tetratricopept 87.6 1 2.2E-05 35.1 4.4 31 1795-1825 2-33 (34)
460 KOG3824 Huntingtin interacting 87.4 2.9 6.2E-05 48.7 9.5 55 1808-1864 131-185 (472)
461 KOG1538 Uncharacterized conser 87.3 11 0.00025 47.9 15.1 208 1688-1926 587-830 (1081)
462 KOG4642 Chaperone-dependent E3 87.2 4.6 9.9E-05 46.0 10.7 100 1808-1909 25-126 (284)
463 KOG3298 DNA-directed RNA polym 87.1 3 6.5E-05 44.3 8.7 66 1467-1534 80-156 (170)
464 PRK11712 ribonuclease G; Provi 86.8 1.3 2.9E-05 56.8 7.4 60 1376-1435 36-109 (489)
465 KOG2471 TPR repeat-containing 86.8 3.2 6.9E-05 51.3 9.9 109 1766-1874 246-380 (696)
466 PRK10811 rne ribonuclease E; R 86.3 1.4 3.1E-05 59.0 7.3 72 1259-1333 38-110 (1068)
467 PRK11712 ribonuclease G; Provi 86.1 1.4 3E-05 56.7 6.9 64 1465-1529 35-112 (489)
468 PF10602 RPN7: 26S proteasome 86.1 3.9 8.5E-05 45.7 9.8 98 1687-1790 37-143 (177)
469 PF10246 MRP-S35: Mitochondria 86.0 3 6.5E-05 41.0 7.4 61 488-556 14-74 (104)
470 PF08292 RNA_pol_Rbc25: RNA po 86.0 2.4 5.3E-05 44.0 7.4 60 1378-1437 3-75 (122)
471 KOG3409 Exosomal 3'-5' exoribo 85.7 1.8 4E-05 46.1 6.3 67 498-564 68-145 (193)
472 PF13181 TPR_8: Tetratricopept 85.5 1.5 3.2E-05 34.1 4.4 32 1830-1861 2-33 (34)
473 PF13174 TPR_6: Tetratricopept 85.2 1.4 3.1E-05 33.7 4.2 32 1762-1793 2-33 (33)
474 KOG3298 DNA-directed RNA polym 84.5 5 0.00011 42.7 8.7 60 1378-1438 81-151 (170)
475 KOG0890 Protein kinase of the 84.5 1.3E+02 0.0029 45.2 25.1 134 1794-1930 1629-1785(2382)
476 COG1747 Uncharacterized N-term 83.8 1.1E+02 0.0025 38.8 20.9 76 1746-1822 85-160 (711)
477 PF08292 RNA_pol_Rbc25: RNA po 83.7 2.9 6.3E-05 43.4 6.7 58 498-556 3-74 (122)
478 PF08631 SPO22: Meiosis protei 83.6 1.1E+02 0.0024 36.9 24.4 203 1686-1891 35-274 (278)
479 KOG0545 Aryl-hydrocarbon recep 83.4 19 0.00042 41.2 13.2 68 1830-1899 231-298 (329)
480 KOG2422 Uncharacterized conser 83.1 29 0.00064 44.4 16.0 144 1678-1824 276-450 (665)
481 KOG1308 Hsp70-interacting prot 83.1 0.82 1.8E-05 54.4 2.7 115 1773-1891 127-243 (377)
482 KOG0376 Serine-threonine phosp 82.7 1.6 3.4E-05 54.4 5.1 101 1769-1871 13-114 (476)
483 KOG2300 Uncharacterized conser 82.6 1.5E+02 0.0032 37.6 25.5 219 1698-1924 287-551 (629)
484 KOG3409 Exosomal 3'-5' exoribo 82.4 5.9 0.00013 42.5 8.3 70 1161-1230 66-143 (193)
485 KOG0985 Vesicle coat protein c 82.2 42 0.0009 45.5 17.3 125 1763-1888 609-749 (1666)
486 KOG2300 Uncharacterized conser 81.7 63 0.0014 40.7 17.7 91 1796-1886 48-150 (629)
487 KOG1130 Predicted G-alpha GTPa 81.7 15 0.00033 44.7 12.4 222 1666-1891 31-303 (639)
488 PRK12442 translation initiatio 81.4 5.6 0.00012 38.2 7.0 65 1471-1540 8-73 (87)
489 PF11207 DUF2989: Protein of u 81.3 64 0.0014 36.6 16.3 95 1749-1848 100-197 (203)
490 KOG0551 Hsp90 co-chaperone CNS 80.5 8.7 0.00019 45.9 9.7 97 1763-1861 84-185 (390)
491 PF04910 Tcf25: Transcriptiona 80.4 47 0.001 41.6 17.0 168 1754-1931 33-224 (360)
492 KOG1920 IkappaB kinase complex 80.0 55 0.0012 45.5 18.0 76 1742-1820 888-966 (1265)
493 COG3629 DnrI DNA-binding trans 79.3 11 0.00024 44.8 10.4 81 1829-1909 153-236 (280)
494 TIGR00008 infA translation ini 79.3 6.2 0.00013 36.4 6.4 60 1471-1535 6-66 (68)
495 COG2909 MalT ATP-dependent tra 79.1 2.6E+02 0.0057 38.3 25.5 181 1685-1878 346-552 (894)
496 PF13176 TPR_7: Tetratricopept 79.0 3.3 7.2E-05 32.9 4.2 26 1688-1713 1-26 (36)
497 KOG3783 Uncharacterized conser 78.9 1.2E+02 0.0026 39.1 19.3 83 1680-1768 261-344 (546)
498 cd05701 S1_Rrp5_repeat_hs10 S1 78.7 1.6 3.6E-05 38.6 2.4 58 1165-1224 2-60 (69)
499 KOG2422 Uncharacterized conser 78.5 34 0.00074 43.9 14.5 98 1830-1930 343-449 (665)
500 PF10345 Cohesin_load: Cohesin 78.5 2.6E+02 0.0056 37.9 26.7 188 1744-1932 38-257 (608)
No 1
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=8.6e-200 Score=1852.26 Aligned_cols=1624 Identities=37% Similarity=0.562 Sum_probs=1309.0
Q ss_pred cCCCCCCCCCcCCCCCCCCCCchhhhhhhhc--cccccccccccc---c--cccccccccccccccCCcCccCCccCCCc
Q 000173 43 LALPPDDDVPVFPRGGGHSLTQRERDEIHAE--VDAEFEAVERGL---H--KKNKKKKKKTERKANETVDDLGSLFGDGI 115 (1935)
Q Consensus 43 ~~~~~~~~e~~fprgg~~~lt~~e~~~~~~~--~d~lf~~~~~~~---~--k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1935)
..+..++++++|||||+|.|||+|+++...| .|.+|+....+. . ++++..++..++-. ..++.+.
T Consensus 27 ~~l~~~t~~~~fprgg~s~lt~~e~~kv~~E~~~e~l~~~~~vke~~~~~~~~~k~vk~~~s~~s--------~~~~~~~ 98 (1710)
T KOG1070|consen 27 SSLKRKTAAPDFPRGGASKLTPLEIEKVEEEAFIEGLTGFGVVKEVFDDGRPKKKTVKKSASKVS--------KKFTENF 98 (1710)
T ss_pred ccccccccccccccccccccChHHHHHHHHHHHhhhhhcccceecccCCCCccccccccchhhHH--------Hhhhccc
Confidence 3446678899999999999999999999444 555555321110 1 11111111111100 0111111
Q ss_pred CCCCCceeeccccCCcCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhcccccccccCCCCCcccCCCEEEE
Q 000173 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 195 (1935)
Q Consensus 116 ~~~~~~~~e~l~~k~l~~G~~~lG~V~~i~~~~l~vslp~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~ 195 (1935)
....+..++++++|+++|||+|||+|++|+..|+.+|+|++|+|||+.++||+.+
T Consensus 99 ~~~k~~~~~~~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~~~------------------------- 153 (1710)
T KOG1070|consen 99 NEEKPEIINAFQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSDEM------------------------- 153 (1710)
T ss_pred cccchhhhhhccccccCCcceeeeeeeeccccceeEEccCcccccccccccCHhH-------------------------
Confidence 1112556899999999999999999999999999999999999999999999882
Q ss_pred EEEEeecCccccceeEEEEeechhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCCCCCCcCC
Q 000173 196 IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK 275 (1935)
Q Consensus 196 ~V~~~~~~~~~~~~~~i~LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~ 275 (1935)
+.+|+.|.+.|.|+||||+++|+|++..+||+...++++ .+..|+
T Consensus 154 ----------------------------------~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~pn-~~~~lK 198 (1710)
T KOG1070|consen 154 ----------------------------------LAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFPN-LGAKLK 198 (1710)
T ss_pred ----------------------------------hhhhhhhccccccccccccchhcCCccccchhhhccCch-hhhhcc
Confidence 235788999999999999999999999999999999763 233799
Q ss_pred CCcEEEEEEEEEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEeccccc
Q 000173 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355 (1935)
Q Consensus 276 ~G~~~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~ 355 (1935)
+||+++|+|++++. +.+++|..+..+....+++.++++++.|+|||+|+|.|++|++||+.++|+++|+|+++..||.
T Consensus 199 vGq~l~~~V~k~~s--~~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~dil~~ftG~l~~~hl~ 276 (1710)
T KOG1070|consen 199 VGQWLRVSVTKSTS--ERVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDILNGFTGFLDKKHLP 276 (1710)
T ss_pred cCceEEEEEEeccC--ceEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEecccccceeehhhCC
Confidence 99999999999875 4888999999888888888899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeChhhccCCCCCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCc
Q 000173 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435 (1935)
Q Consensus 356 ~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~~~~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~ 435 (1935)
+++ .|..|+...|.|+. +..+ ...++.++.+....+... |+..-+++.
T Consensus 277 ~~~-------~~~~~~~~l~~vi~--~s~R-------------------v~~~~f~~ka~ki~~l~~-~v~ai~p~~--- 324 (1710)
T KOG1070|consen 277 PFL-------RYFENQEKLGKVIH--KSDR-------------------VFVVDFFDKASKILVLKA-GVDAIAPSR--- 324 (1710)
T ss_pred chh-------hccccHHHhhcccc--hhhh-------------------eeeechhhccceEEEecC-ccceEccCC---
Confidence 764 48889888888643 2211 223444444444444443 555444421
Q ss_pred cceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEechhhccccccccccCCCCCEEEEEEEEEecCceE
Q 000173 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515 (1935)
Q Consensus 436 v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~ 515 (1935)
.+. +-. ...++.|..++|||+.+..+|.++..+++.+.++.+++++.++.||.++.+.| ++.++
T Consensus 325 --------~~~---~~~-~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~k~~~~s~V~~r~l~~~~~-svdt~--- 388 (1710)
T KOG1070|consen 325 --------IEK---VLS-FEIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEGKFSLVSDVSPRGLLKKPV-SVDTE--- 388 (1710)
T ss_pred --------ccc---ccc-hhhcccCceEEEEEEEEeeccceEEeecchhhccCceEEEeccCCceEEEecc-cCChh---
Confidence 111 011 12489999999999999999999999999999999999999999999999998 77665
Q ss_pred EEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEE
Q 000173 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595 (1935)
Q Consensus 516 V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~ 595 (1935)
..|++|+.|++.+...+|+.+|..|..|.||||.+..+++.+|+| .|..++.|.++.|.++.+ .++|++.+
T Consensus 389 ------~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v~~~sK~pvis~y~~~~~--~t~~~l~~ 459 (1710)
T KOG1070|consen 389 ------EVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-VLCVSKLPVISMYADAVK--LTHGMLSK 459 (1710)
T ss_pred ------hhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-eeEeecCcceEEEeeccc--cCcchhhc
Confidence 679999999999999999999999999999999999999999999 999999999999988876 77888877
Q ss_pred EecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCC--CCccccccCCCCeE
Q 000173 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT--RVSEDDLVKLGSLV 673 (1935)
Q Consensus 596 i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~--~~~~~~~~~~G~iv 673 (1935)
+. .|++|+-++ |..+.+||++|-+.++-+.||+.++.. ......++++|++|
T Consensus 460 v~------------q~~v~~~e~--------------~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V 513 (1710)
T KOG1070|consen 460 VP------------QGMVPIYEV--------------GTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLV 513 (1710)
T ss_pred cc------------cCCCCceec--------------CCcccCccceecccCcEEEEEEehHhhccccccccccccccee
Confidence 76 566665444 455555555555555555555544321 23345679999999
Q ss_pred EEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEeccchhcchhccCC
Q 000173 674 SGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLP 753 (1935)
Q Consensus 674 ~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~~~~~~ 753 (1935)
+|+|.++++.|+.|.+. .+++.|+||..||+|++.+.++...++..|.++ |+|+++.+.+++.||+|++|++...++|
T Consensus 514 ~~~I~~vt~~Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl~~~~~~~~v~l~~K~slv~~~~plp 591 (1710)
T KOG1070|consen 514 PGVIRKVTPQGVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVLSVNRDRNRVALTLKKSLVNTQLPLP 591 (1710)
T ss_pred eeEEEEecCCcEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEEEEEccCCeeEEEechhhhcccCCCc
Confidence 99999999999999995 367999999999999999999998888899998 8999999999999999999999988999
Q ss_pred ccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
.+|+++++|++++|+|+++.++||||+|+||++||+|.++|++.++.+++++|.+||||.|+|+++|++++|+.|+++.+
T Consensus 592 ~d~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s 671 (1710)
T KOG1070|consen 592 SDFEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRAS 671 (1710)
T ss_pred cchhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCCc-
Q 000173 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA- 912 (1935)
Q Consensus 834 ~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~~- 912 (1935)
.|+.++..+..++| ..|.+..+.+.+.+.+.++|++.+. ++.|++...||.|+
T Consensus 672 ~~~~a~~~~~~e~~-------------------------~~g~v~s~~~~~~tkd~viVei~~~-~~~~v~~~~~L~dg~ 725 (1710)
T KOG1070|consen 672 SCARACVKRSVENF-------------------------VKGGVKSLKSIDKTKDSVIVEIVDQ-GITGVGVFGELVDGS 725 (1710)
T ss_pred hhHHHHHHHHHHHh-------------------------hccccccceeehhccccEEEEccCc-ceEEEEEEEEEccCc
Confidence 88544443333333 3445555555555555566666553 56666666666652
Q ss_pred ------------------cccCCCeEEEEEEEeeccccEEEEeehhhhhhhhhhcchhhHHhHhhhhhccccccCCcceE
Q 000173 913 ------------------TVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTV 974 (1935)
Q Consensus 913 ------------------~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v 974 (1935)
.+.+|+.+.++|++++..++.|.+++++.|...+ .++..|...
T Consensus 726 v~~~~~~~~kl~~~t~~~~lv~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~-------------------~~l~k~~~~ 786 (1710)
T KOG1070|consen 726 VVVNKVLENKLRKNTSLLHLVVGQVTVGVILSISLKKSLVLISLCTDLPNNA-------------------TKLLKGSYA 786 (1710)
T ss_pred eEEccchhhhhhhcchhheeeecceeEEEEEEeehhhhhhhccccccccchH-------------------HHHhcCchh
Confidence 2688999999999999999999998888876553 346778888
Q ss_pred EEEEEEEeeeeEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhh----------
Q 000173 975 NAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA---------- 1043 (1935)
Q Consensus 975 ~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~---------- 1043 (1935)
.|+|++|..++.|++|. ++++++++.+|.+ ....+......||++.+....++. ...+ ..+....
T Consensus 787 ~~~v~~is~~~~~~a~~--~~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~-~~~~-~~~a~e~p~~K~~~~~~ 862 (1710)
T KOG1070|consen 787 LALVRSISKEGKFVAFV--SNLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEP-KVVK-DLKAVEKPKKKKEKKFI 862 (1710)
T ss_pred HHHHHhhhhheeheeec--ccccceeeccccccccccccceeeeecccceEEEecCh-hHHH-HHHhhcchhhccceeEE
Confidence 89999999999999995 5699999999986 555566777788999999988762 1111 1111110
Q ss_pred --cc-ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEE
Q 000173 1044 --IS-ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTAR 1120 (1935)
Q Consensus 1044 --~~-~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~ 1120 (1935)
.. ..+-....+.++.+++.+|.++.|+|++|+++|++|.|+.+.+||||++|++|+..++.. |+++|++|+.|.||
T Consensus 863 ~~~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~eitD-p~~k~~vG~~I~vr 941 (1710)
T KOG1070|consen 863 KVSSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEITD-PLDKFKVGDGIFVR 941 (1710)
T ss_pred EeccccCCCccccccccccceeeeeEEEEEEeeecccceEEeccccccCceehHHhhccccccCC-hhhhcccCCeEEEE
Confidence 00 001111224567889999999999999999999999999999999999999999877544 99999999999999
Q ss_pred EEeee-cC-----CCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEcc
Q 000173 1121 IIAKS-NK-----PDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194 (1935)
Q Consensus 1121 Vl~~~-~~-----~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~ 1194 (1935)
|+|.| .+ ....+..++|||+||+.++.... ...+. .+++.||.|+|||+++..+|+|+.++|.++||||++
T Consensus 942 viG~~D~k~lpith~i~k~~v~ElSvkps~les~~~-~t~s~--~q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIpll 1018 (1710)
T KOG1070|consen 942 VIGGHDVKDLPITHLISKEQVLELSVKPSELESDEF-NTTST--KQFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLL 1018 (1710)
T ss_pred EEcCCccccCccccccchhhhhhhccChhhhccccc-cccch--hhhhcCCeEEEEEEccccceeEEEccccccceeeee
Confidence 99996 11 12234689999999999984431 11112 257999999999999999999999999999999999
Q ss_pred ccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCc
Q 000173 1195 DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGV 1274 (1935)
Q Consensus 1195 ~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~ 1274 (1935)
+++.+...+++|+..|++|++++++|+..+..+-...++.... .... .+|+++.|+|+++.++
T Consensus 1019 d~s~~~~~le~~e~~F~~g~al~~~V~~~~~~~tv~~iG~~~~-----------~k~~-----s~G~~l~Grv~kv~~~- 1081 (1710)
T KOG1070|consen 1019 DTSLDLHVLELPESLFPLGKALDEYVVRNDKSKTVRAIGFSKS-----------DKNP-----SPGDILFGRVSKVLPG- 1081 (1710)
T ss_pred eccchhhhhhCchhhcccccceeeEEecccceeEEEecccccC-----------CCCC-----Ccchhhcceeeeeccc-
Confidence 9999999999999999999999999999873222222222111 1111 1899999999999998
Q ss_pred CeEEEEeCCceEEEEecc-cccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCC
Q 000173 1275 GGLVVQIGPHLYGRVHFT-ELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSS 1353 (1935)
Q Consensus 1275 ~g~~V~l~~~~~G~v~~t-el~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~ 1353 (1935)
++.++++++..|+++.+ +++|+|... |...|..++.+.|++|.++.. ++.++||+|.++..+..
T Consensus 1082 -~~~l~~~~~~~G~~~~i~~~~d~~~~~-----------P~~~f~~~~~v~~~~L~vs~~---n~~leLslr~sr~~~t~ 1146 (1710)
T KOG1070|consen 1082 -YLILQLPFKVFGRVSFIEDMSDSYSMT-----------PVEHFTKIQIVYVCVLSVSAL---NKGLELSLRESRTKITP 1146 (1710)
T ss_pred -eeEEecCCccccceEEeeehhccccCC-----------hHHhcccccEEEEEEEEEecc---cccceeecccccccCcc
Confidence 89999999999988755 999999887 999999999999999999986 34499999999843322
Q ss_pred CCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEE
Q 000173 1354 TNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433 (1935)
Q Consensus 1354 ~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kV 1433 (1935)
....++.+.+++++++|++++|||+++.++|+|+.|++++.|+++++++++.|.+.|++.|++|++|.++|
T Consensus 1147 ---------~~~kd~~iks~eDlk~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv 1217 (1710)
T KOG1070|consen 1147 ---------VDSKDGSIKSIEDLKIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRV 1217 (1710)
T ss_pred ---------ccccCCcccchhhcccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEE
Confidence 23467889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCccc
Q 000173 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIET 1512 (1935)
Q Consensus 1434 l~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~ 1512 (1935)
+++++..+|++|+|+++....... ......++++|+...|+|.++.+||+||+++++ ++.|+||++++++.+.++...
T Consensus 1218 ~~ve~~s~riel~Lk~s~~~d~~~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~ 1296 (1710)
T KOG1070|consen 1218 LSVEEDSKRIELSLKNSDIKDTVK-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITA 1296 (1710)
T ss_pred EEeeccCceEEEEEeccccCCchh-hhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhccc
Confidence 999999999999999988753222 344578999999999999999999999999986 579999999999999999999
Q ss_pred ccCCCCEEEEEEEEEecCCCeeEEeccccccCCCcccccCCccchhhHHHHhhcccCcccccccCccccccccccccCCC
Q 000173 1513 IYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDMESEDGG 1592 (1935)
Q Consensus 1513 ~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1592 (1935)
.|..|++|+|.+++++.+++||++++|.+|+..+++....+..++.-+ .+.+..+.....+...-+|.+ .+.+...
T Consensus 1297 ~~~~~~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~~~~e~v~--~~~~~~~d~~s~~~~~~~d~g--~q~~~~g 1372 (1710)
T KOG1070|consen 1297 LYYAGDRVKACVLKEDSEKKRISLGLKSSYLSSEDDARITSYGEEGVE--MEEESHSDPKSMEEVAAEDPG--FQSSSGG 1372 (1710)
T ss_pred ceeccceeeeEeeeccchhhhhhhhhhhhccCChhhhhcccccccCcc--hhcccccCccchhhhcccCCC--ccccccc
Confidence 999999999999999999999999999999966432221100000000 000000000000000000000 0000000
Q ss_pred cc-cccccccccCCCCc-cc-cCCCCCCCcCcCCC-CCCCCcchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHhccCC
Q 000173 1593 SL-VLAQIESRASVPPL-EV-NLDDEQPDMDNGIS-QNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDA 1668 (1935)
Q Consensus 1593 ~~-~~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~~~~~e~~~~~~~~ 1668 (1935)
.. ....++.....+++ +- .|++++.|+.-++. .++|+.+ ++++.++++.|.....+++.++. +.
T Consensus 1373 ~~~e~~~d~~~~~~p~~le~s~~td~e~d~~~~~~e~~qde~d-----------ee~e~~kee~e~~~~~~e~~dl~-~~ 1440 (1710)
T KOG1070|consen 1373 FNLEDAVDEMSETLPDALEDSCETDSEVDEEVEDEELDQDEKD-----------EEKEKDKEEREENRSDEEERDLS-RA 1440 (1710)
T ss_pred eehhhhhhhccccCCchhhhcccchhhhhhccccccccccccc-----------hhhhhhhhhccccccchhhcccc-cC
Confidence 00 00001111111222 11 25554433211111 1111111 11112222334455556666655 79
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
|++.+||+|+++.+||++.+|++||+|+++.+++++||++++|||.+|++||+.|++|+|+||+|||+.|| +.+++.+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 7899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1749 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
+|+|||+||++..+|.+|+.+|.+.+++++|.++|+.|+++|.+..++|+.|++|++++ +.++|+.+++|||+++|.++
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
|+++..+||+++|++||+||||++||..|..||+|.|+|+.|+++++++|+.+.+|.+|||++++++++++|+++|++|+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+||+++||.+.++.|++||++||++..
T Consensus 1679 eyEk~~Gde~~vE~VKarA~EYv~s~~ 1705 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKARAKEYVESIK 1705 (1710)
T ss_pred HHHHhcCchhhHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999853
No 2
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=2.8e-106 Score=1011.25 Aligned_cols=1471 Identities=21% Similarity=0.247 Sum_probs=1091.3
Q ss_pred eeeccccCCcCcCcEEEEEEEEEecccEEEEcC-CCcEEEEeccccCchhhcccccccccCCCCCcccCCCEEEEEEEEe
Q 000173 122 YANKITLKNISAGMKLWGVVAEVNEKDLVICLP-GGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQL 200 (1935)
Q Consensus 122 ~~e~l~~k~l~~G~~~lG~V~~i~~~~l~vslp-~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1935)
...|||-..+.+||.+-+.|.++.+++-++... ..++|++-. |+ ...+..+|++||||||.|++.
T Consensus 145 ~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~---~q-----------~pn~~~~lKvGq~l~~~V~k~ 210 (1710)
T KOG1070|consen 145 LNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEK---SQ-----------FPNLGAKLKVGQWLRVSVTKS 210 (1710)
T ss_pred cccccCHhHhhhhhhhccccccccccccchhcCCccccchhhh---cc-----------CchhhhhcccCceEEEEEEec
Confidence 457899999999999999999999999998873 112222211 11 235678999999999999987
Q ss_pred ecCc-cccceeEEEEeechhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCCCCCCcCCCCcE
Q 000173 201 DDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLL 279 (1935)
Q Consensus 201 ~~~~-~~~~~~~i~LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~ 279 (1935)
.... ....++++++++.|...| +|..++|.|||+++|.|+||+|||+++|| +.+++|||+++++++.. .+.+||.
T Consensus 211 ~s~~v~ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl~~~~--~~~~~~~ 286 (1710)
T KOG1070|consen 211 TSERVVKSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHLPPFL--RYFENQE 286 (1710)
T ss_pred cCceEEecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhCCchh--hccccHH
Confidence 6521 111378999999999999 89999999999999999999999999999 79999999999998665 6889999
Q ss_pred EEEEEEEEcCCCcEEEEccCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCC
Q 000173 280 LQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFP 359 (1935)
Q Consensus 280 ~~~~v~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~ 359 (1935)
++|.|+..+ .|++.+.... -+++... -..+++++.||..++..+..+...|..++..+--.+..+..|+.....
T Consensus 287 ~l~~vi~~s--~Rv~~~~f~~--ka~ki~~--l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~ 360 (1710)
T KOG1070|consen 287 KLGKVIHKS--DRVFVVDFFD--KASKILV--LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDVLQMDSLALFTLKE 360 (1710)
T ss_pred Hhhcccchh--hheeeechhh--ccceEEE--ecCccceEccCCcccccchhhcccCceEEEEEEEEeeccceEEeecch
Confidence 999987644 6777665521 1111111 134688999999999999999999999999887888888889886543
Q ss_pred CCCccccCCCCCEEEEEEEEEeC---CCceEEEeeChhhccCCC--C----CCCCCCCCeEEeEEEEEEECCcceEEEcC
Q 000173 360 TTNWKNDYNQHKKVNARILFVDP---TSRAVGLTLNPYLLHNRA--P----PSHVKVGDIYDQSKVVRVDRGLGLLLDIP 430 (1935)
Q Consensus 360 ~~~~~~~~~~G~~v~arVl~~~~---~~~~v~LSl~p~~~~~~~--~----~~~~~~G~iv~~~~V~~v~~~~G~~v~l~ 430 (1935)
.+++.+|..+.-|++|++..-| ++-.++++-+||+..+.. | .....+|..+-.|.+...+-.+++++...
T Consensus 361 -s~ie~k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~v~~~sK 439 (1710)
T KOG1070|consen 361 -SAIEGKFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLKVLCVSK 439 (1710)
T ss_pred -hhccCceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeeeeeEeec
Confidence 5788999999999999998877 234899999999987643 2 24677777777787777766666666665
Q ss_pred CCCCccceEeeccccchHHHHhhh----ccccCCCEEEEEEEEEEecCCeEEEEechhhccccccccccCCCCCEEEEEE
Q 000173 431 STPVSTPAYVTISDVAEEEVRKLE----KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKV 506 (1935)
Q Consensus 431 ~~~~~v~gfv~~s~~~~~~~~~~~----~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~~~~~~~~l~~G~~v~g~V 506 (1935)
. +.+.+|++...+.+..+.... ..|++|+++.|||.+|.+.+..++|++.++++..++++.+||+.|++|.|+|
T Consensus 440 ~--pvis~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I 517 (1710)
T KOG1070|consen 440 L--PVISMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGVI 517 (1710)
T ss_pred C--cceEEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeEE
Confidence 4 345899999887776665542 3599999999999999999999999999999999999999999999999999
Q ss_pred EEEecCceEEEeCCC-eEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEecccccchhhHHhhhhhc
Q 000173 507 IAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEA 583 (1935)
Q Consensus 507 ~~v~~~G~~V~l~~~-v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~ 583 (1935)
.++++.|+.|.+..+ |.|++|..|++|.+...|...|++|..+++|||.+ +.+++.||+|++|++...|.+.+|+++
T Consensus 518 ~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~ 597 (1710)
T KOG1070|consen 518 RKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQA 597 (1710)
T ss_pred EEecCCcEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhhc
Confidence 999999999998765 99999999999999999999999999999999999 589999999999999999999999999
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCCc-
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS- 662 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~~- 662 (1935)
+||++++|+|..+.++||||+|+||++||+|.++|+..++.+++++|++||+|.+.|+++|++++||.+||+.+.+...
T Consensus 598 ~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a~ 677 (1710)
T KOG1070|consen 598 IPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARAC 677 (1710)
T ss_pred CCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred ---cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCc-ccccccccccccCCCeEeeEEEeecCCC--e
Q 000173 663 ---EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADH-LEHATVMKSVIKPGYEFDQLLVLDNESS--N 736 (1935)
Q Consensus 663 ---~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~-~~~~~~~~~~~k~G~~l~~vl~~d~~~~--~ 736 (1935)
..+.+..|.+..+.+...+.+.+.|++. ..++.|++-..||.|. ...+..+.++++.+...-. |+++...+ -
T Consensus 678 ~~~~~e~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~-lv~gq~~~~~i 755 (1710)
T KOG1070|consen 678 VKRSVENFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLLH-LVVGQVTVGVI 755 (1710)
T ss_pred HHHHHHHhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhhe-eeecceeEEEE
Confidence 3366778988889999999999999993 2479999999999993 3344444444443333332 23332222 1
Q ss_pred EEEeccchhcchhc--cCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEE
Q 000173 737 LLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRS 814 (1935)
Q Consensus 737 i~ls~K~~l~~~~~--~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~ 814 (1935)
+.+++|++++..+. .+|....++..|...+++|.+|...|.|+.|.+++.++++.+++.+....+....++ ||.|.|
T Consensus 756 ~~isl~k~lv~~s~~~~L~~~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v~s~~~d~~~~~y-~Q~v~~ 834 (1710)
T KOG1070|consen 756 LSISLKKSLVLISLCTDLPNNATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLVDSELDDLTKAEY-GQSVTV 834 (1710)
T ss_pred EEeehhhhhhhccccccccchHHHHhcCchhHHHHHhhhhheeheeecccccceeeccccccccccccceeee-ecccce
Confidence 45556666655443 366666778889999999999999999999999999999999988776666555444 499999
Q ss_pred EEEEeeCCCCeEEEeecccccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeecceeEEEe
Q 000173 815 NILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSF 894 (1935)
Q Consensus 815 ~V~~vd~e~~rl~LSlk~~~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~~g~~v~~ 894 (1935)
++.++++......++++.......-. + .. ...--..+|-....+..+++.+|++|.++|++++++++.|.+
T Consensus 835 ~~~st~~~~~~~~~a~e~p~~K~~~~-~----~~----~~~~~~d~~Vd~a~k~~~~~~igsiv~a~v~svKp~~L~v~l 905 (1710)
T KOG1070|consen 835 KLLSTEPKVVKDLKAVEKPKKKKEKK-F----IK----VSSNDSDNEVDLAIKSTEDLSIGSIVRAYVKSVKPDQLNVLL 905 (1710)
T ss_pred EEEecChhHHHHHHhhcchhhcccee-E----EE----eccccCCCccccccccccceeeeeEEEEEEeeecccceEEec
Confidence 99999998888888877664321000 0 00 000000011111122247899999999999999999999999
Q ss_pred ccCCceeEEEeeeecCC---------ccccCCCeEEEEEEEe-----------eccccEEEEeehhhhhhhhhhcchhhH
Q 000173 895 EEHSDVYGFITHHQLAG---------ATVESGSVIQAAILDV-----------AKAERLVDLSLKTVFIDRFREANSNRQ 954 (1935)
Q Consensus 895 ~~~~~v~g~i~~~~ls~---------~~~~~G~~v~~~vl~~-----------~~~~~~v~ls~k~~l~~~~~~~~~~~~ 954 (1935)
.. ++.|.||.+|+-+ ..+++|+.|.++|+.. -..++..+||+||+.++. .++..
T Consensus 906 ~~--~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~ElSvkps~les-~~~~t--- 979 (1710)
T KOG1070|consen 906 AA--NHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLELSVKPSELES-DEFNT--- 979 (1710)
T ss_pred cc--cccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCccccCccccccchhhhhhhccChhhhcc-ccccc---
Confidence 87 5889998888765 2799999999999875 124566899999999883 22221
Q ss_pred HhHhhhhhccccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcc
Q 000173 955 AQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTA 1034 (1935)
Q Consensus 955 ~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~ 1034 (1935)
.+..+++.|++|+|+|.++..+|+++++. .-+.|++|+.+...
T Consensus 980 --------~s~~q~~~gq~vtGfV~nv~ke~~w~~is--p~v~~RIplld~s~--------------------------- 1022 (1710)
T KOG1070|consen 980 --------TSTKQFKAGQEVTGFVNNVSKEWLWVRIS--PFVDGRIPLLDTSL--------------------------- 1022 (1710)
T ss_pred --------cchhhhhcCCeEEEEEEccccceeEEEcc--ccccceeeeeeccc---------------------------
Confidence 13367899999999999999999999983 33334444322210
Q ss_pred cchhhhhhhccccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCC
Q 000173 1035 GRLLLLLKAISETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIG 1114 (1935)
Q Consensus 1035 ~~l~L~~~~~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G 1114 (1935)
+.|.+ ++|-+.|..|
T Consensus 1023 -------------------------------------------------------~~~~l----------e~~e~~F~~g 1037 (1710)
T KOG1070|consen 1023 -------------------------------------------------------DLHVL----------ELPESLFPLG 1037 (1710)
T ss_pred -------------------------------------------------------hhhhh----------hCchhhcccc
Confidence 01111 3444566777
Q ss_pred CEEEEEEEeeecCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEcc
Q 000173 1115 QTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFIL 1194 (1935)
Q Consensus 1115 ~~v~~~Vl~~~~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~ 1194 (1935)
+.++|+|...+.. .++.-++ ++ + .... ..+|++.-|.|..+..+++.|++....-|+.+..
T Consensus 1038 ~al~~~V~~~~~~-----~tv~~iG--~~---------~-~~k~--~s~G~~l~Grv~kv~~~~~~l~~~~~~~G~~~~i 1098 (1710)
T KOG1070|consen 1038 KALDEYVVRNDKS-----KTVRAIG--FS---------K-SDKN--PSPGDILFGRVSKVLPGYLILQLPFKVFGRVSFI 1098 (1710)
T ss_pred cceeeEEecccce-----eEEEecc--cc---------c-CCCC--CCcchhhcceeeeeccceeEEecCCccccceEEe
Confidence 7777777665400 0000010 00 0 0111 2589999999999999999999999999976655
Q ss_pred -ccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCC-----CCcccccccccccccccCCCEEEEEEE
Q 000173 1195 -DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI-----SDKTVDISNDNMQTFIHEGDIVGGRIS 1268 (1935)
Q Consensus 1195 -~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~-----~~~~~~~~~~~~~~~l~~G~iv~g~V~ 1268 (1935)
+++++.+ .+|...|..++.+.++++.++...+.+.||++...... .++...+.++++ .|+++.|.|.
T Consensus 1099 ~~~~d~~~--~~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~eDlk-----~g~iv~G~V~ 1171 (1710)
T KOG1070|consen 1099 EDMSDSYS--MTPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSIEDLK-----IGDIVRGFVK 1171 (1710)
T ss_pred eehhcccc--CChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccchhhcc-----cCceeEEEEE
Confidence 6666543 35777899999999999999988888999998543211 122223345555 9999999999
Q ss_pred EEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccc
Q 000173 1269 KILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSL 1348 (1935)
Q Consensus 1269 ~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~ 1348 (1935)
.+.+. |+|+.|+.++.+++++++++|++... +...|++|+.|..+|+.++.. .++++||++++.
T Consensus 1172 nv~~~--glfi~ls~~v~a~v~is~~~ds~~k~-----------w~k~~~~gklv~~rv~~ve~~---s~riel~Lk~s~ 1235 (1710)
T KOG1070|consen 1172 NVETK--GLFIALSRKVEAFVPISGLSDSFEKE-----------WEKHLPVGKLVTGRVLSVEED---SKRIELSLKNSD 1235 (1710)
T ss_pred EecCC--cEEEEEccceEEEEEccccccchhhh-----------hhccCCccceeeeEEEEeecc---CceEEEEEeccc
Confidence 99999 99999999999999999999988776 667899999999999999987 679999999986
Q ss_pred cCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCc--EEEEECccCCCcccCCccccCCCC
Q 000173 1349 DGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVLLSNLSDGYVESPEKEFPIG 1426 (1935)
Q Consensus 1349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v--~g~V~~s~lsd~~~~~~~~~f~~G 1426 (1935)
-+. .........++++|+...|+|.++.++|+||.+++++ .|+.|+++..+....+....|..|
T Consensus 1236 ~~d--------------~~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~ 1301 (1710)
T KOG1070|consen 1236 IKD--------------TVKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAG 1301 (1710)
T ss_pred cCC--------------chhhhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceecc
Confidence 111 1113344567999999999999999999999999887 899999999999999999999999
Q ss_pred cEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc
Q 000173 1427 KLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH 1506 (1935)
Q Consensus 1427 ~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~ 1506 (1935)
+.|.++++.++.+.+||.+.++.+......+.. ...+. .-|+=.+.+.
T Consensus 1302 ~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~---~~~~~-------------~e~v~~~~~~---------------- 1349 (1710)
T KOG1070|consen 1302 DRVKACVLKEDSEKKRISLGLKSSYLSSEDDAR---ITSYG-------------EEGVEMEEES---------------- 1349 (1710)
T ss_pred ceeeeEeeeccchhhhhhhhhhhhccCChhhhh---ccccc-------------ccCcchhccc----------------
Confidence 999999999999999999999987654211110 00100 0000000000
Q ss_pred ccCcccccCCCCEEEEEEEEEecCCCeeEEeccccccCCCcccccCCccchhhHHHHhhcccCcccccccCccccccccc
Q 000173 1507 VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQDMDM 1586 (1935)
Q Consensus 1507 ~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1586 (1935)
..++ +.-+.+-+ +...|.... .. ...++.. ..++.. .+ +.
T Consensus 1350 ~~d~----~s~~~~~~----------------~d~g~q~~~--~g---~~~e~~~--d~~~~~---~p----------~~ 1389 (1710)
T KOG1070|consen 1350 HSDP----KSMEEVAA----------------EDPGFQSSS--GG---FNLEDAV--DEMSET---LP----------DA 1389 (1710)
T ss_pred ccCc----cchhhhcc----------------cCCCccccc--cc---eehhhhh--hhcccc---CC----------ch
Confidence 0000 00000000 000000000 00 0000000 000000 00 00
Q ss_pred c-ccCCCcccccccccccCCCCccccCCCCCCCcCcCCCCCC---CCcchh--hhhhhhhhhhhhhHhHHHHHHH-----
Q 000173 1587 E-SEDGGSLVLAQIESRASVPPLEVNLDDEQPDMDNGISQNQ---GHTDEA--KTIDEKNNRHAKKKEKEEREQE----- 1655 (1935)
Q Consensus 1587 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~k~~~e~~----- 1655 (1935)
. ++++.+...++.. .+.+.++++.+.+-+ ++.+++ .+......+ ....-++.+..
T Consensus 1390 le~s~~td~e~d~~~------------~~~e~~qde~dee~e~~kee~e~~~~~~e~~dl~~--~pesaeDferlvrssP 1455 (1710)
T KOG1070|consen 1390 LEDSCETDSEVDEEV------------EDEELDQDEKDEEKEKDKEEREENRSDEEERDLSR--APESAEDFERLVRSSP 1455 (1710)
T ss_pred hhhcccchhhhhhcc------------ccccccccccchhhhhhhhhccccccchhhccccc--CCcCHHHHHHHHhcCC
Confidence 0 0000000000000 000000000000000 000000 000000000 00000111111
Q ss_pred -----H-HHHHHHHhccCCCCcHHHHHHHHH-cCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhH
Q 000173 1656 -----I-RAAEERLLEKDAPRTPDEFERLVR-SSPN----SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK 1724 (1935)
Q Consensus 1656 -----~-~~~e~~~~~~~~~~a~~~ferll~-~~P~----s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ek 1724 (1935)
| +-+.-.+--.+.+.|++.+||+|. .|+. -..+|++|..++..-|.-+...++|+||.+..++
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~------ 1529 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDA------ 1529 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcch------
Confidence 1 111111112457889999999995 4553 4579999999999999999999999999986653
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRV 1801 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~ 1801 (1935)
+.++..++.++...+.+ +.|.++|++.++...+ ..+|..|+..+.+.++-++|++++.+|++--|. ...+--..|
T Consensus 1530 ~~V~~~L~~iy~k~ek~--~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKN--DEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 56899999999999865 8999999999988774 599999999999999999999999999988775 778888999
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHHcC
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTD-LWSIYLDQEIRLG 1877 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~d-lw~~ya~~e~k~g 1877 (1935)
++.++. +.+++|.+|+..+..+|++. ++|..|+..+.++|+.+.+|.+|||++.. .|+++- ++..|+++|-+.|
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRt--DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRT--DLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccch--hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 999999 99999999999999999995 89999999999999999999999999876 466665 6888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 000173 1878 DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1878 ~~e~ar~lferal~ 1891 (1935)
+-+.+..+=.||.+
T Consensus 1686 de~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1686 DEKNVEYVKARAKE 1699 (1710)
T ss_pred chhhHHHHHHHHHH
Confidence 98888777777765
No 3
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-63 Score=603.63 Aligned_cols=492 Identities=23% Similarity=0.277 Sum_probs=440.9
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeCh
Q 000173 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393 (1935)
Q Consensus 314 ~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p 393 (1935)
.+...+.||+.|.|+|.+|.++++.|++++...|+|++.+++.... ...|++|+.+.+.|+.+......+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~----~~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV----EDVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhccccc----cceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 4677899999999999999999999999999999999999987643 237999999999999999888899999987
Q ss_pred hhccCCC--CCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEE
Q 000173 394 YLLHNRA--PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471 (1935)
Q Consensus 394 ~~~~~~~--~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~ 471 (1935)
.-....+ ....+..|.+|+ ++|....++ |+.|++.+ ++||+|.|+++..+++++. -.+|.++.+.|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~g----vr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIEG----VRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEECC----EEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 6544333 346789999998 567777788 99999962 6999999999988777764 579999999999999
Q ss_pred ecCCeEEEEechhhc----cccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCC
Q 000173 472 HLEGLATGILKASAF----EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547 (1935)
Q Consensus 472 ~~d~~~~~s~k~~~~----~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~ 547 (1935)
..++.+++|.+...- +++...++.+++|++|+|+|++++++|+||+|+ |++|+||.+||||.++.+|++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 999999999765443 566788999999999999999999999999998 699999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCC
Q 000173 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCE 625 (1935)
Q Consensus 548 ~v~~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~ 625 (1935)
+|+|+||++ +++|+.||+|+++.++|..+-.. ..+|+.+.|+|+++.+|||||++++|+.||+|+|||+|.....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~---~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~~ 317 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEEDPWEGIEKK---YPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKNV 317 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccCcHHHHhhh---cCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccCC
Confidence 999999999 68999999999999766554333 4899999999999999999999999999999999999998878
Q ss_pred CCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCC-CCc-cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccc
Q 000173 626 PSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEH 703 (1935)
Q Consensus 626 ~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~h 703 (1935)
|++++++||+|.|+||+||++++||+||||+... ||. ....+++|+.++|.|.++|++|+||.+ +++++|+++.++
T Consensus 318 P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~d 395 (541)
T COG0539 318 PSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLSD 395 (541)
T ss_pred HHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHHh
Confidence 9999999999999999999999999999998754 554 335599999999999999999999999 889999999999
Q ss_pred cCCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEEC
Q 000173 704 LADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFL 782 (1935)
Q Consensus 704 Lsd~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~ 782 (1935)
|+|.....+.. .|+.|++++ .+|.+|++++++.|+.|+...+||+... ..++.|+.++|+|+++.++|+||+|.
T Consensus 396 ~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l~ 470 (541)
T COG0539 396 LSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVELG 470 (541)
T ss_pred cCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEec
Confidence 99966554433 899999999 8999999999999999999999887643 34789999999999999999999999
Q ss_pred CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 783 GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 783 ~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+++.||+|.++++.+ .|++||+|+|+|+++|+.++++.||+|....
T Consensus 471 ~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 471 GGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred Cceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 999999999999876 7999999999999999999999999997643
No 4
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-58 Score=563.36 Aligned_cols=496 Identities=23% Similarity=0.322 Sum_probs=440.0
Q ss_pred CCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEe
Q 000173 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1935)
Q Consensus 402 ~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~ 481 (1935)
...+.+|+++. ++|+.++.+ +++|+++.+ ..|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~K---seg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGK---SEGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCc---cccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 46789999997 689999998 899999974 38999999998765444 49999999999999998888999998
Q ss_pred chhhcc-ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eC
Q 000173 482 KASAFE-GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558 (1935)
Q Consensus 482 k~~~~~-~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~ 558 (1935)
++.... .+.-....+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..++.++ .-.+|.++.++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 766544 34455667889999999999999999999998 6999999999987544443 245999999999999 57
Q ss_pred CeEEEEEecccccchhhHH-hhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEE
Q 000173 559 KRITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637 (1935)
Q Consensus 559 ~~i~ltlK~~l~~~~~~~~-~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~ 637 (1935)
+++.+|+|..+..+....- .-++++++|+++.|+|+++++|||||+++ |+.||+|+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 8999999988875554332 33678899999999999999999999995 599999999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEEeeCCC-CCc-cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCccccccccc
Q 000173 638 CRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715 (1935)
Q Consensus 638 ~rVl~~d~~~~ri~lS~k~~~~-~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~ 715 (1935)
|+|+++|++++|+.||+|+... ||. ....+++|+.+.|+|++++++|+||++ .++++|++|.+++||..... +.
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 9999999999999999998744 775 457899999999999999999999999 88999999999999954333 56
Q ss_pred ccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCcc
Q 000173 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794 (1935)
Q Consensus 716 ~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~l 794 (1935)
+.+++||+++ .+|.+|++++||+||+|+...+||+..... +++|.++.|.|.++|++|+||.+.+|+.||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~---~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADK---HPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhh---cCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 899999999999999999999999875533 889999999999999999999999999999999999
Q ss_pred CcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccC
Q 000173 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1935)
Q Consensus 795 s~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 874 (1935)
+|.....+...|+.|+.|+|.|+.+|++++|++|++|+... +|| ..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~------------------------~p~---~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE------------------------SPW---EEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc------------------------Cch---hhhHhhccC
Confidence 99887777779999999999999999999999999998754 344 334677999
Q ss_pred ccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCCccccCCCeEEEEEEEeeccccEEEEeehhhhhhh
Q 000173 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1935)
Q Consensus 875 G~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~ 945 (1935)
|+.|+|+|+++.++|+++.+.+ ++.|+|+.++++...+++||+++|+|+.+|..++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 57999999999999999999999999999999999999999877654
No 5
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=7.8e-56 Score=578.82 Aligned_cols=495 Identities=20% Similarity=0.243 Sum_probs=420.0
Q ss_pred cccccccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeC
Q 000173 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392 (1935)
Q Consensus 313 ~~s~~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~ 392 (1935)
..++..+.+|.+|.|+|.+|++++++|++++..+|+|+..++.. .+++|++|.|+|+.+++. . +.||..
T Consensus 313 ~~~~~~~~~G~iV~G~Vv~i~~~~v~VdiG~K~eGiI~~~E~~~---------~~kvGd~i~~~V~~~~~~-~-~~LS~~ 381 (863)
T PRK12269 313 RYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKSEGRVPVEEFEA---------PPKAGDGVRVYVERVTPY-G-PELSKT 381 (863)
T ss_pred hhccccCCCCCEEEEEEEEEECCEEEEEeCCCceEEeEHHHhcc---------CCCCCCEEEEEEEEEcCC-c-eEEEeh
Confidence 44578899999999999999999999999999999999888732 479999999999998874 3 778887
Q ss_pred hhhcc--CCCCCCCCCCCCeEEeEEEEEEE--CCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEE
Q 000173 393 PYLLH--NRAPPSHVKVGDIYDQSKVVRVD--RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468 (1935)
Q Consensus 393 p~~~~--~~~~~~~~~~G~iv~~~~V~~v~--~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~ 468 (1935)
..... +....+++..|++|+ ++|.+++ .+ |++|+++.+ ++||+|.|+++....+++. ..+|+++.+.|+
T Consensus 382 ~~~~~~~~~~l~~a~~~g~~V~-G~Vv~v~~~kg-G~~Vdig~~---~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~ 454 (863)
T PRK12269 382 KADRLGLKVKLRDAERDGTPVE-GRIVRLTEKKS-GFEVDLGAG---MMAFLPISQSDCQKVDAPE--SLIGLTSKFYIE 454 (863)
T ss_pred HhhhhHHHHHHHHHHhCCCeEE-EEEEEEEeecC-EEEEEECCC---cEEEEEHHHhccccccchH--HhCCCeEEEEEE
Confidence 54321 122246789999998 6788764 45 899999643 4899999998755444443 469999999999
Q ss_pred EEEe-----cCCeEEEEechhhcc----ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCC
Q 000173 469 GFRH-----LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539 (1935)
Q Consensus 469 ~~~~-----~d~~~~~s~k~~~~~----~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p 539 (1935)
.++. .++.+++|.+....+ .....++++.+|++|+|+|.+++++|+||+++ |++||||.+|++|.+..+|
T Consensus 455 ~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~v~~~ 533 (863)
T PRK12269 455 RISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARP 533 (863)
T ss_pred EEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccccCCH
Confidence 9875 335789997654322 12234678999999999999999999999995 8999999999999888899
Q ss_pred CCCCCCCCEEEEEEEEE--eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcc
Q 000173 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617 (1935)
Q Consensus 540 ~~~fkvG~~v~~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se 617 (1935)
.+.|++||+|+||||.+ .++++.||+|..+.+++... .+.+++|+++.|+|+++.++|+||++++|+.||+|+|+
T Consensus 534 ~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~p~~~~---~~~~~vG~iV~G~V~~I~~fG~fVeL~~gveGLvhiSE 610 (863)
T PRK12269 534 REFVKKGQTIELKVIRLDQAEKRINLSLKHFQPDPWLEF---ENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHISE 610 (863)
T ss_pred HHhccCCCEEEEEEEEEecCCCeEEEEEeccccchhhhh---hccCCCCCEEEEEEEEEeCCeEEEEecCCceeeeEHHH
Confidence 99999999999999999 47899999998766543222 23468999999999999999999999999999999999
Q ss_pred cCC-CCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCC-CCCcc-ccccCCCCeEEEEEEEEecCcEEEEEEecCc
Q 000173 618 LGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGY 694 (1935)
Q Consensus 618 ~~~-~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~ 694 (1935)
++| ..+.+|.+.|++||+|+|+|+++|++++|+.||+++.. ++|.. .+.+++|++++|+|++++++|+||++ .++
T Consensus 611 ls~~~~~~~p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l--~~g 688 (863)
T PRK12269 611 FSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEM--EEG 688 (863)
T ss_pred hcCccccCCHHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHHHhCCCCCEEEEEEEEEecceEEEEe--CCC
Confidence 999 56788999999999999999999999999999999754 46754 46789999999999999999999999 789
Q ss_pred eeEEEeccccCCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEe
Q 000173 695 SKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNII 773 (1935)
Q Consensus 695 v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~ 773 (1935)
++|+||.++|||..... ...+.|++||.|+ .+|.+|++++++.||+|+...++|.... .++++|+.+.|+|++++
T Consensus 689 V~GlIh~sels~~~~~~-~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~dpw~~~~---~~~~vG~iV~GkV~~v~ 764 (863)
T PRK12269 689 IDGFLHVDDLSWVKRTR-PADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVFA---NAYGVGSTVEGEVSSVT 764 (863)
T ss_pred cEEEEEhHHhhcccccc-chhhccCCCCEEEEEEEEEeccCCEEEEEecccccChHHHHH---hhCCCCCEEEEEEEEEe
Confidence 99999999999843221 1345799999999 8999999999999999999988887632 34789999999999999
Q ss_pred cCeEEEEECCCeEEEeeCCccCcccccCcc---cCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 774 ETGCFVRFLGRLTGFAPRSKAVDGQRADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 774 ~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~---~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++|+||++.+|+.||+|.++++|++..++. ..|++||.|+|+|+++|+++++|.||+|+...
T Consensus 765 ~~GvFVeL~~gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~LSlk~~~~ 829 (863)
T PRK12269 765 DFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQR 829 (863)
T ss_pred cCeEEEEcCCCeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEEEEEechhh
Confidence 999999999999999999999998765543 45999999999999999999999999997753
No 6
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1e-54 Score=567.87 Aligned_cols=497 Identities=20% Similarity=0.254 Sum_probs=432.3
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeChhhc
Q 000173 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1935)
Q Consensus 317 ~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~ 396 (1935)
..+.+|++|.|+|.+++++|++|++++...|++|..|++.... ...|++|++++|+|+.+++..+.+.||+++...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdig~k~~g~lp~~e~~~~~~----~~~~~vG~~i~~~V~~~~~~~~~i~lS~k~~~~ 101 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPLEEFKNEQG----ELEVKVGDEVEVYVERIEDGFGETVLSREKAKR 101 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEeCCCeEEEEEHHHhcCccc----cccCCCCCEEEEEEEEEECCCCcEEEechHHHH
Confidence 4578999999999999999999999888999999999985322 246999999999999999988999999987643
Q ss_pred cC--CCCCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecC
Q 000173 397 HN--RAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1935)
Q Consensus 397 ~~--~~~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d 474 (1935)
.. ....+++..|++|+ ++|..+..+ |++|++++ ++||+|.+++++..+.+++ +.+|+++.|+|+.++...
T Consensus 102 ~~~~~~l~~~~~~g~~v~-g~V~~~~~~-G~~V~~~g----~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~ 173 (565)
T PRK06299 102 LEAWDKLEKAFENGEIVE-GVINGKVKG-GFTVDLNG----VEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKR 173 (565)
T ss_pred HHHHHHHHHHhhCCCEEE-EEEEEEECC-EEEEEECC----EEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCC
Confidence 32 22235788999998 678888887 99999972 6999999999976655553 679999999999999999
Q ss_pred CeEEEEechhhcc----ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEE
Q 000173 475 GLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1935)
Q Consensus 475 ~~~~~s~k~~~~~----~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~ 550 (1935)
+.+.+|.++.... ++...+.++++|++++|+|+++.++|++|+++ +++|+||.++++|.+..+|.+.|++|++|+
T Consensus 174 ~~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~ 252 (565)
T PRK06299 174 NNIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVK 252 (565)
T ss_pred CEEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEE
Confidence 9999998876532 22344678999999999999999999999998 899999999999988899999999999999
Q ss_pred EEEEEE--eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCC-CCCCCC
Q 000173 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEPS 627 (1935)
Q Consensus 551 ~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~-~~~~~~ 627 (1935)
|+|+++ +++++.||+|....++|.... +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|.
T Consensus 253 v~V~~~d~~~~~i~lS~k~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~v~Glv~~sel~~~~~~~~~~ 329 (565)
T PRK06299 253 VKVLKFDKEKKRVSLGLKQLGEDPWEAIE---KKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHPS 329 (565)
T ss_pred EEEEEEeCCCCeEEEEEEecccChhHHHH---hhCCCCCEEEEEEEEEeCCeEEEEeCCCCEEEEEHHHcCccccccCHH
Confidence 999999 468999999988766543322 34588999999999999999999999999999999999975 345677
Q ss_pred CCCCCCCEEEEEEEEEeCCCCEEEEEEeeCC-CCCc-cccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccC
Q 000173 628 SMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLA 705 (1935)
Q Consensus 628 ~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~-~~~~-~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLs 705 (1935)
..|++||.|+|+|+++|++++++.||+++.. .+|. ....+++|++|.|+|+.++++|++|++ .++++|+||..+|+
T Consensus 330 ~~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~g~i~~s~l~ 407 (565)
T PRK06299 330 KVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGL--EGGIDGLVHLSDIS 407 (565)
T ss_pred HhcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHcC
Confidence 7899999999999999999999999998653 3443 234678999999999999999999999 77999999999999
Q ss_pred CcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCC
Q 000173 706 DHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGR 784 (1935)
Q Consensus 706 d~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~g 784 (1935)
+... ...+...|++|+.|+ +++.+|.+++++.||+|++..++|... .+++++|+++.|+|+++.++|+||++.+|
T Consensus 408 ~~~~-~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p~~~~---~~~~~~G~vV~G~V~~v~~~G~fV~l~~g 483 (565)
T PRK06299 408 WDKK-GEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEF---AKKHKKGSIVTGTVTEVKDKGAFVELEDG 483 (565)
T ss_pred cccc-ccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCchhHH---HhhcCCCCEEEEEEEEEecCceEEecCCC
Confidence 7432 123557899999999 799999999999999999998888653 35678999999999999999999999999
Q ss_pred eEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 785 LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 785 l~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+.||+|.+++++.++.++.+.|++||.|+|+|+++|++++|+.||+|++..
T Consensus 484 i~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 484 VEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDE 534 (565)
T ss_pred cEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhh
Confidence 999999999999999999999999999999999999999999999998754
No 7
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=9.9e-55 Score=563.74 Aligned_cols=490 Identities=22% Similarity=0.299 Sum_probs=424.4
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCceEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCCceEEEeeChhhc
Q 000173 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1935)
Q Consensus 317 ~~l~pG~~v~~~V~~v~~~Gl~v~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~G~~v~arVl~~~~~~~~v~LSl~p~~~ 396 (1935)
..+.||++|.|+|.+|+++|++|+|++..+|+++..+++... ..|++|+.+.++|+.+++..+++.||+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQR 87 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhhh
Confidence 458999999999999999999999999999999999987532 47999999999999998888999999987643
Q ss_pred cCCC--CCCCCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecC
Q 000173 397 HNRA--PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1935)
Q Consensus 397 ~~~~--~~~~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d 474 (1935)
...+ ...++..|.+++ ++|.++..+ |++|++++ ++||+|.++++...+.+. .+.+|++++|+|+.++...
T Consensus 88 ~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~g----~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~~ 159 (516)
T TIGR00717 88 HELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLNG----VEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQKR 159 (516)
T ss_pred hHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEECC----EEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECCC
Confidence 2222 235678999998 688988888 99999972 599999999875433333 3689999999999999988
Q ss_pred CeEEEEechhhccc----cccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEE
Q 000173 475 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1935)
Q Consensus 475 ~~~~~s~k~~~~~~----~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~ 550 (1935)
+.+++|.++...+. ....++++++|++|+|+|+++.++|++|+++ +++||+|.++++|.+..+|...|++|++|+
T Consensus 160 ~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v~ 238 (516)
T TIGR00717 160 NNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238 (516)
T ss_pred CcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEEE
Confidence 89999987653221 2345678999999999999999999999996 799999999999988888988999999999
Q ss_pred EEEEEE--eCCeEEEEEecccccchhhHHhhh-hhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCC-CCCCC
Q 000173 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626 (1935)
Q Consensus 551 ~rVL~v--~~~~i~ltlK~~l~~~~~~~~~~~-~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~-~~~~~ 626 (1935)
|+|+++ +++++.||+|....++ |..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|
T Consensus 239 v~Vl~~d~~~~~i~lS~k~~~~~p----~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~~ 314 (516)
T TIGR00717 239 VKVIKFDKEKGRISLSLKQLGEDP----WEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHP 314 (516)
T ss_pred EEEEEEECCCCcEEEEEEecchhH----HHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCCH
Confidence 999999 4678999999876543 3333 34689999999999999999999999999999999999975 34566
Q ss_pred CCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCC-CCCcc-ccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEecccc
Q 000173 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704 (1935)
Q Consensus 627 ~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~-~~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hL 704 (1935)
.+.|++||.|+|+|+++|++++++.||+++.. .+|.. .+.+++|++++|+|++++++|+||++ +++++|+||..+|
T Consensus 315 ~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~l 392 (516)
T TIGR00717 315 SKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSDI 392 (516)
T ss_pred HHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHC
Confidence 67899999999999999999999999998753 34432 24688999999999999999999999 7799999999999
Q ss_pred CCcccccccccccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECC
Q 000173 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783 (1935)
Q Consensus 705 sd~~~~~~~~~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~ 783 (1935)
+|.... ....+.+++|+.+. +++.+|.+++++.||+|+++.++|... .+++++|+.+.|.|++++++|+||++.+
T Consensus 393 s~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~~ 468 (516)
T TIGR00717 393 SWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELPG 468 (516)
T ss_pred cCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcCC
Confidence 984321 12346899999999 799999999999999999988888653 3567899999999999999999999999
Q ss_pred CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 784 gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
++.||+|.+++++++..++.+.|++||.|+|+|+++|++++|+.||+|
T Consensus 469 ~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 469 GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986
No 8
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=2.7e-54 Score=564.43 Aligned_cols=507 Identities=18% Similarity=0.255 Sum_probs=415.0
Q ss_pred cccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhh
Q 000173 964 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043 (1935)
Q Consensus 964 ~~~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~ 1043 (1935)
.+..++.|+.|+|+|..++++++||++ +++..|++|..+|. ..+++|++|.|.|..++ + .+ ..|+...
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~--~-~~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVT--P-YG-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEc--C-Cc-eEEEehH
Confidence 356799999999999999999999999 89999999999984 23689999999999975 2 23 3333221
Q ss_pred ccccccccccccccCCCCCCCCeEEEEEEEEe--CCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEE
Q 000173 1044 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121 (1935)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk--~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~V 1121 (1935)
... ...|.+-...++.|++|+|+|.++. +.|+.|+++.+..|+++.+|+..... ..+ ...+|++++++|
T Consensus 383 ~~~----~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 ADR----LGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hhh----hHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 100 0112233457889999999999984 57999999888999999999854321 112 225899999999
Q ss_pred EeeecCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCc
Q 000173 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201 (1935)
Q Consensus 1122 l~~~~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~ 1201 (1935)
+.++....+...+.+.||.|..+-..........+++ +++|+.|+|+|.++.++|++|+++ +++|++|.++++|+.
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9986321111234699998874332211000112444 589999999999999999999995 899999999999874
Q ss_pred chhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEe
Q 000173 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281 (1935)
Q Consensus 1202 ~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l 1281 (1935)
+.++.+.|++||.++|+|+++|.+++++.||++... .++|....+.++ +|+++.|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 456778899999999999999999999999999863 577876666666 999999999999999 999999
Q ss_pred CCceEEEEecccccc-cccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCC
Q 000173 1282 GPHLYGRVHFTELKN-ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360 (1935)
Q Consensus 1282 ~~~~~G~v~~tel~d-~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~ 1360 (1935)
++++.|++|++|+++ ....+ |.+.|++||.|+|+|+++|.+ ++++.||++... .
T Consensus 599 ~~gveGLvhiSEls~~~~~~~-----------p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~------ 653 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSK-----------PSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----A------ 653 (863)
T ss_pred cCCceeeeEHHHhcCccccCC-----------HHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----c------
Confidence 999999999999975 22333 888899999999999999986 679999999886 2
Q ss_pred CCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-CccccCCCCcEEEEEEEEEeCC
Q 000173 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-SPEKEFPIGKLVAGRVLSVEPL 1439 (1935)
Q Consensus 1361 ~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-~~~~~f~~G~~V~~kVl~vd~~ 1439 (1935)
++|....+++++|+++.|+|++++++|+||+++++++|+||.+++||.... .+.+.|++||.|+|+|+++|++
T Consensus 654 ------~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e 727 (863)
T PRK12269 654 ------NPWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQ 727 (863)
T ss_pred ------CchHHHHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEecc
Confidence 234444567999999999999999999999999999999999999997654 4556899999999999999999
Q ss_pred CCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc---ccccCC
Q 000173 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRA 1516 (1935)
Q Consensus 1440 ~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~---~~~~~~ 1516 (1935)
++||.||+|+...+||... ..++++|++|.|+|+++.+||+||+|.+ +++|++|+++++|++..+. .+.|++
T Consensus 728 ~rrI~LS~K~l~~dpw~~~----~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~v 802 (863)
T PRK12269 728 ARRIRLGVKQLSDNPWQVF----ANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAV 802 (863)
T ss_pred CCEEEEEecccccChHHHH----HhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCC
Confidence 9999999999888887532 4568999999999999999999999987 7999999999999876443 356999
Q ss_pred CCEEEEEEEEEecCCCeeEEeccccc
Q 000173 1517 GEKVKVKILKVDKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1517 Gd~V~~~Il~id~~~~ri~lslK~~~ 1542 (1935)
||.|+++|+++|+++++|.||+|++.
T Consensus 803 GD~V~v~Vl~iD~~~rkI~LSlk~~~ 828 (863)
T PRK12269 803 GDRVKAVIVDMNVKDRKVAFSVRDYQ 828 (863)
T ss_pred CCEEEEEEEEEEcCCCEEEEEEechh
Confidence 99999999999999999999999753
No 9
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=5.5e-54 Score=560.90 Aligned_cols=508 Identities=22% Similarity=0.303 Sum_probs=426.6
Q ss_pred cccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhhcc
Q 000173 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1935)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~~~ 1045 (1935)
.+++.|+.|+|+|..+++++++|++ +++..|++|.+++.. ..+...|.+|+.+.+.|..++ +..++++|+.+...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~~-~~~~~~~~vG~~i~~~V~~~~--~~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFKN-EQGELEVKVGDEVEVYVERIE--DGFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhcC-ccccccCCCCCEEEEEEEEEE--CCCCcEEEechHHH
Confidence 4578999999999999999999999 788999999999952 223457999999999999986 44566666544321
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEEEeee
Q 000173 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1935)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1935)
. ...|..-...++.|++|+|+|.++.+.|+.|+++ ++.|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ~----~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 R----LEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred H----HHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 1 0112222346778999999999999999999998 8999999999865431 222 2569999999999998
Q ss_pred cCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhh
Q 000173 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1935)
Q Consensus 1126 ~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1935)
.. +..+.||+|+..-..........+.+ +++|+.+.|+|..+.+++++|+++ ++.|++|.++++|+. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23589999986522111000012333 699999999999999999999998 899999999999863 457
Q ss_pred ccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCce
Q 000173 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1935)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~ 1285 (1935)
+.+.|++||.|.|+|+++|.+++++.||++... .++|......++ +|+++.|+|+++.+. |+||+|++++
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 788899999999999999999999999999764 467875555555 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCC
Q 000173 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1365 (1935)
Q Consensus 1286 ~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~ 1365 (1935)
.|++|++|+++.... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+. .
T Consensus 311 ~Glv~~sel~~~~~~----------~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~----------- 361 (565)
T PRK06299 311 EGLVHVSEMSWTKKN----------KHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----E----------- 361 (565)
T ss_pred EEEEEHHHcCccccc----------cCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----c-----------
Confidence 999999999754321 12667789999999999999986 579999999885 2
Q ss_pred CccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1366 ~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-~~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
+++.....++++|++|.|+|++++++|+||+|+.+++|++|+++++|.+. .+|.+.|++||.|+|+|+++|+++++|.
T Consensus 362 -~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ 440 (565)
T PRK06299 362 -NPWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERIS 440 (565)
T ss_pred -chhhhHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEE
Confidence 23445556789999999999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEE
Q 000173 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524 (1935)
Q Consensus 1445 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~I 1524 (1935)
||+|+...+||.. ...++++|++|.|+|+++.++|+||.+.+ ++.|+||.|++++.++.++.+.|++||.|+|+|
T Consensus 441 ls~k~~~~~p~~~----~~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V 515 (565)
T PRK06299 441 LGIKQLEEDPFEE----FAKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKV 515 (565)
T ss_pred EEEehhhcCchhH----HHhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEE
Confidence 9999998877643 25678999999999999999999999986 899999999999999999999999999999999
Q ss_pred EEEecCCCeeEEecccccc
Q 000173 1525 LKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1525 l~id~~~~ri~lslK~~~~ 1543 (1935)
+++|++++||+||+|++..
T Consensus 516 ~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 516 INIDRKNRRISLSIKALDE 534 (565)
T ss_pred EEEccccCEEEEEeeehhh
Confidence 9999999999999998754
No 10
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=7.7e-53 Score=546.11 Aligned_cols=502 Identities=20% Similarity=0.297 Sum_probs=418.4
Q ss_pred cccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEeccCCCCcccchhhhhhhcc
Q 000173 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1935)
Q Consensus 966 ~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~~~~~~~~~~l~L~~~~~~ 1045 (1935)
.++++|+.+.|+|..+++++++|+| +++..|++|.+++.. +...|++||.|.+.|..++ +..+++.|+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~ 86 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQ 86 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhh
Confidence 3588999999999999999999999 899999999999852 2267999999999999875 45677666544321
Q ss_pred ccccccccccccCCCCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEEEeee
Q 000173 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1935)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~ 1125 (1935)
. ...|......+..|++++|+|.++.+.|+.|+++ +..|+++.+++.+... .+ ....+|++++|+|+.++
T Consensus 87 ~----~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~ 156 (516)
T TIGR00717 87 R----HELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLD 156 (516)
T ss_pred h----hHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEE
Confidence 1 1123333356789999999999999999999998 8899999999854321 11 24579999999999998
Q ss_pred cCCCCCCcceEEEEeccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhh
Q 000173 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1935)
Q Consensus 1126 ~~~~~~~~~~~elS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~ 1205 (1935)
.+ ...+.||+|+.+-..........++. +++|+.++|+|.++.++++||+++ +++|++|.++++|.. ..+
T Consensus 157 ~~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~ 226 (516)
T TIGR00717 157 QK-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKH 226 (516)
T ss_pred CC-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCC
Confidence 42 23488999875433211000112333 699999999999999999999996 799999999999864 456
Q ss_pred ccccCCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCce
Q 000173 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1935)
Q Consensus 1206 ~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~ 1285 (1935)
+.+.|++|+.+.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.+. |+||++++++
T Consensus 227 ~~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v 296 (516)
T TIGR00717 227 PSEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGI 296 (516)
T ss_pred HHHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCC
Confidence 777899999999999999999999999998763 356765444455 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCC
Q 000173 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1365 (1935)
Q Consensus 1286 ~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~ 1365 (1935)
.|++|++|++++... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+.
T Consensus 297 ~g~v~~sels~~~~~----------~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~----------------- 346 (516)
T TIGR00717 297 EGLVHVSEMSWVKKN----------SHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK----------------- 346 (516)
T ss_pred EEEEEHHHcCCcccc----------CCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----------------
Confidence 999999999754211 12556789999999999999986 579999999875
Q ss_pred CccchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1366 ~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-~~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
.+++....+++++|++++|+|++++++|+||+|+++++|+||+++++|.+. .++...|++|+.|.|+|+++|+++++|.
T Consensus 347 ~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ 426 (516)
T TIGR00717 347 ANPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRIS 426 (516)
T ss_pred cCcHHHHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEE
Confidence 223555566789999999999999999999999999999999999999764 4677899999999999999999999999
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEE
Q 000173 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524 (1935)
Q Consensus 1445 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~I 1524 (1935)
||+|++..+||.. ...++++|+++.|+|+++++||+||.|.+ ++.||||.|++++++++++.+.|++||.|+++|
T Consensus 427 ls~K~~~~~p~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V 501 (516)
T TIGR00717 427 LGVKQLTENPWEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKV 501 (516)
T ss_pred EeeccccCCchhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEE
Confidence 9999988877633 24678999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEecCCCeeEEecc
Q 000173 1525 LKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1525 l~id~~~~ri~lslK 1539 (1935)
+++|++++||+||+|
T Consensus 502 ~~id~~~~~i~ls~k 516 (516)
T TIGR00717 502 VDIDKKNRKVSLSVK 516 (516)
T ss_pred EEEeCCCCEEEEEEC
Confidence 999999999999987
No 11
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=2.1e-49 Score=502.30 Aligned_cols=418 Identities=19% Similarity=0.283 Sum_probs=357.5
Q ss_pred CCCCCCeEEEEEEEEeCCeEEEEeCCCeeEEEEeeeccCCccchhhccccCCCCCCEEEEEEEeeecCCCCCCcceEEEE
Q 000173 1060 SYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWELS 1139 (1935)
Q Consensus 1060 ~~~~G~~v~~~V~~vk~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~p~~~~~~G~~v~~~Vl~~~~~~~~~~~~~~elS 1139 (1935)
.+.+|++|+|+|++|.+.++.|+++.+..|+|+.+|+.+.+.+ ..+++|++|+|+|++++. ..+.||
T Consensus 31 ~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~~------~~~~~G~~i~~~Vi~~~~-------~~~~lS 97 (491)
T PRK13806 31 ELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADGE------LTVAVGDEVELYVVSVNG-------QEIRLS 97 (491)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCcccc------ccccCCCEEEEEEEEEcC-------CEEEEE
Confidence 4889999999999999999999999999999999999754321 258999999999999861 248888
Q ss_pred eccccccccccCCccccccccCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhccccCCCCCEEEEE
Q 000173 1140 IKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGH 1219 (1935)
Q Consensus 1140 ~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~ 1219 (1935)
.+... ... ...+.+ .++.|+.|+|+|.++.++|++|++. +++|++|++++++.. ..++.. + +|+.+.++
T Consensus 98 ~~~~~-~~~----~~~l~~-~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~~ 166 (491)
T PRK13806 98 KALSG-QGG----AAMLEE-AYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQFL 166 (491)
T ss_pred hHHhh-hhh----HHHHHH-HHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEEE
Confidence 66321 111 111223 3789999999999999999999997 899999999988753 233333 3 99999999
Q ss_pred EEEEeCCCcEEEEEecccccCC-CCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccc
Q 000173 1220 VLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNIC 1298 (1935)
Q Consensus 1220 V~~~d~~~~~~~Ls~~~~~~~~-~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~ 1298 (1935)
|+++|.+++.+.||++...... ...|...+..++ +|+++.|+|+++.++ |+||+|++++.|+||++|+++++
T Consensus 167 V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~l~-----~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~~ 239 (491)
T PRK13806 167 ITRVEENGRNIVVSRRALLEREQKEALEAFMETVK-----EGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWSR 239 (491)
T ss_pred EEEEECCCCeEEEEeehhhhhhhHHHHHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCcc
Confidence 9999999999999998764322 234443334444 999999999999998 99999998999999999999888
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCC-ceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCC
Q 000173 1299 VSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLS 1377 (1935)
Q Consensus 1299 ~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g-~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk 1377 (1935)
..+ |...|++|+.|+|+|+++|.+.++ .+++.||+|+.. .++|.....+++
T Consensus 240 ~~~-----------~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----------------~~p~~~~~~~~~ 291 (491)
T PRK13806 240 VQK-----------ADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----------------GDPWDTVGDRLK 291 (491)
T ss_pred ccC-----------hhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----------------cccchhhhccCC
Confidence 776 778899999999999999986321 158999999885 234555567899
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC-cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccc
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd-~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~ 1456 (1935)
+|+++.|+|+++.++|+||+++++++|+||+++|+| .++.+|.+.|++||.|+++|+++|+++++|.||+|+...+||.
T Consensus 292 ~G~~v~G~V~~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~ 371 (491)
T PRK13806 292 AGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWA 371 (491)
T ss_pred CCCEEEEEEEEEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhH
Confidence 999999999999999999999999999999999999 4778899999999999999999999999999999999988875
Q ss_pred cccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1457 ~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.. ..++++|++|.|+|+++.+||+||+|.+ +++||||+|++++.+..++.+.|++||.|+|+|+++|++++||+|
T Consensus 372 ~~----~~~~~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~L 446 (491)
T PRK13806 372 DV----AERFAPGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISL 446 (491)
T ss_pred Hh----hhhCCCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEE
Confidence 43 5689999999999999999999999987 899999999999999988999999999999999999999999999
Q ss_pred ecccc
Q 000173 1537 GMKSS 1541 (1935)
Q Consensus 1537 slK~~ 1541 (1935)
|+|..
T Consensus 447 s~~~~ 451 (491)
T PRK13806 447 APAGA 451 (491)
T ss_pred Eeehh
Confidence 99963
No 12
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=1.1e-47 Score=486.53 Aligned_cols=411 Identities=20% Similarity=0.286 Sum_probs=354.7
Q ss_pred CCCCCCeEEeEEEEEEECCcceEEEcCCCCCccceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEech
Q 000173 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483 (1935)
Q Consensus 404 ~~~~G~iv~~~~V~~v~~~~G~~v~l~~~~~~v~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~ 483 (1935)
.+.+|++++ ++|++++.+ |++|+++.+ ..||+|.+++.+.. ....+++|++++|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k---~eg~ip~~e~~~~~---~~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSK---VDGVVDRAELLDAD---GELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCC---cEEEEEHHHhcCcc---ccccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 488999998 689999998 999999854 38999999886421 11248999999999999874 457778553
Q ss_pred hhccccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeE
Q 000173 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561 (1935)
Q Consensus 484 ~~~~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i 561 (1935)
.....+....+.+.+|++|+|+|+++.++|++|++. |+.||+|.+|+++....+|+. | +|++++|+|+.+ +++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 322333444677899999999999999999999997 899999999999876677764 4 999999999999 45799
Q ss_pred EEEEecccccchhhHHhh-hhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEE
Q 000173 562 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640 (1935)
Q Consensus 562 ~ltlK~~l~~~~~~~~~~-~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rV 640 (1935)
.||+|..+.......+.. +..+++|+++.|+|+++.++|+||++++++.||+|.++++|.+..+|.+.|++||.|+|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998876544444444 4457899999999999999999999988999999999999998889999999999999999
Q ss_pred EEEeCCC----CEEEEEEeeCCC-CCcc-ccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccc
Q 000173 641 MSSIPAS----RRINLSFMMKPT-RVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714 (1935)
Q Consensus 641 l~~d~~~----~ri~lS~k~~~~-~~~~-~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~ 714 (1935)
+++|+++ +|+.||+++... +|.. ...+++|++++|+|+.++++|+||++ .++++|+||.++|+|... ....
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~-~~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRR-VNKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCcccc-cCCH
Confidence 9999987 489999997633 5643 36789999999999999999999999 779999999999997321 1224
Q ss_pred cccccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCc
Q 000173 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793 (1935)
Q Consensus 715 ~~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ 793 (1935)
.+.+++||.|+ +++.+|.+++++.||+|+...++|.... +++++|+.++|+|+++++||+||++.+|+.||||+|+
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56899999999 8999999999999999999999998754 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 794 ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
+++.+..++.+.|++||.|+|+|+++|++++|+.||++..
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 9999999999999999999999999999999999999965
No 13
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.6e-42 Score=430.22 Aligned_cols=333 Identities=27% Similarity=0.390 Sum_probs=292.1
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEecccccC
Q 000173 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240 (1935)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~~ 1240 (1935)
+++|++|+|+|.++.++++||+|++.++|+||..++++.. ..++.+.|++|+.|+|.|++++++++++.||++.+..
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999864 3467788999999999999999999999999998642
Q ss_pred CCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000173 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320 (1935)
Q Consensus 1241 ~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G 1320 (1935)
..+|....+.++ .|++++|+|+++.++ |++|++ |++|++|+++++..+..+ +. .| +|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~-----------~~-~~-vG 166 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRD-----------LQ-PY-IG 166 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCC-----------hh-hc-CC
Confidence 345654444434 899999999999998 999999 589999999997655443 32 23 89
Q ss_pred CEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeCC
Q 000173 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400 (1935)
Q Consensus 1321 ~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~ 1400 (1935)
+.|+|+|+++|++ ++++.||+|... ... ...++...+.++++|+++.|+|++++++|+||+|+
T Consensus 167 q~V~vkVleid~~---~~~ivLSrr~~l-----~~~--------~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg- 229 (486)
T PRK07899 167 QEIEAKIIELDKN---RNNVVLSRRAWL-----EQT--------QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG- 229 (486)
T ss_pred CEEEEEEEEEECC---CCEEEEEhHHHH-----Hhh--------hHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-
Confidence 9999999999986 579999999764 100 01234455678999999999999999999999997
Q ss_pred CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEe
Q 000173 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1480 (1935)
Q Consensus 1401 ~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~ 1480 (1935)
+++|+||+++|+|.++.+|.+.|++||.|+++|+++|++++||.||+|+...+||... ...+++|+++.|+|+++.
T Consensus 230 gv~Glv~~Sels~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~----~~~~~vG~vv~G~V~~I~ 305 (486)
T PRK07899 230 GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQF----ARTHAIGQIVPGKVTKLV 305 (486)
T ss_pred CEEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhhh----HHhcCCCCEEEEEEEEEe
Confidence 7999999999999999999999999999999999999999999999999998887432 446889999999999999
Q ss_pred eceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1481 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1481 ~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|++++||+||+|+.
T Consensus 306 ~fGvFVeL~~-gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 306 PFGAFVRVEE-GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred ccEEEEEeCC-CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 9999999986 79999999999999998899999999999999999999999999999985
No 14
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.1e-41 Score=422.84 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=290.5
Q ss_pred cccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEecccc
Q 000173 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570 (1935)
Q Consensus 493 ~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~~l~ 570 (1935)
+..+++|++|+|+|++++++|++|+++.+++|+||..|+++.+..+|++.|++|++|+|+|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 5669999999999999999999999988999999999999988889999999999999999999 35789999998654
Q ss_pred cchhhHHhhhhhc-CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCE
Q 000173 571 KSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649 (1935)
Q Consensus 571 ~~~~~~~~~~~~~-~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~r 649 (1935)
. ..|..++++ +.|+++.|+|+++.++|+||++ |++||+|.|++++.++.++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 3 356777776 4799999999999999999999 699999999999876666654 4999999999999999999
Q ss_pred EEEEEeeCCC-----CC-ccccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCe
Q 000173 650 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723 (1935)
Q Consensus 650 i~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~ 723 (1935)
+.||++.... ++ .....+++|++++|+|++++++|+||++ ++++|+||.++|+|.... .+.+.|++||+
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl---ggv~Glv~~Sels~~~v~--~~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHID--HPSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHCCCcccC--CHHHhcCCCCE
Confidence 9999984311 11 1235788999999999999999999999 469999999999985432 23467899999
Q ss_pred Ee-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc
Q 000173 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802 (1935)
Q Consensus 724 l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~ 802 (1935)
|+ +++.+|+++++|.||+|+...++|.... ..+++|+++.|+|++++++|+||++.+|+.||+|.+++++.++.++
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 8999999999999999999999986533 3367899999999999999999999999999999999999999899
Q ss_pred ccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 803 ~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.+.|++||+|+|+|+++|++++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
No 15
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.2e-39 Score=407.31 Aligned_cols=335 Identities=24% Similarity=0.306 Sum_probs=293.5
Q ss_pred cccccccccCCCCCEEEEEEEEEecCceEEEe-CCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEE
Q 000173 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 563 (1935)
Q Consensus 487 ~~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l-~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~l 563 (1935)
++...++.++++|++|+|+|++++++|++|++ +++++|+||..|+++.+..+|...|++|++|+|+|+.+ +++++.|
T Consensus 6 ~~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~l 85 (390)
T PRK06676 6 EESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLL 85 (390)
T ss_pred HHHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEE
Confidence 34455788999999999999999999999999 77999999999999988889999999999999999999 4567999
Q ss_pred EEecccccchhhHHhhhhh-cCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 564 THKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1935)
Q Consensus 564 tlK~~l~~~~~~~~~~~~~-~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1935)
|+|+.... +.|..+.+ .++|+++.|+|+++.++|+||+| +|++||+|.+++++....++.. + +||++.|+|++
T Consensus 86 S~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~ 159 (390)
T PRK06676 86 SKRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIE 159 (390)
T ss_pred EHHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEE
Confidence 99976432 34555543 37899999999999999999999 6889999999999876666654 3 99999999999
Q ss_pred EeCCCCEEEEEEeeCCCC-----C-ccccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccc
Q 000173 643 SIPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1935)
Q Consensus 643 ~d~~~~ri~lS~k~~~~~-----~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~ 716 (1935)
+|++++++.||++..... + .....+++|++|.|+|+.++++|++|.+ ++++|+||.+|+++... ..+.+
T Consensus 160 ~d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~--~~~~~ 234 (390)
T PRK06676 160 LDPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERV--EKPSE 234 (390)
T ss_pred EECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCcccc--CCHHH
Confidence 999999999999864221 1 1235688999999999999999999999 46999999999998432 23456
Q ss_pred cccCCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC
Q 000173 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1935)
Q Consensus 717 ~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls 795 (1935)
.+++|+.|+ +++.+|++++++.||+|+.+.++|..+ ++++++|+.+.|+|++++++|+||++.+|+.||+|.++++
T Consensus 235 ~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~ 311 (390)
T PRK06676 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQIS 311 (390)
T ss_pred hcCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcC
Confidence 789999999 888999999999999999998888654 4568899999999999999999999999999999999999
Q ss_pred cccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 796 ~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+.+..++.+.|++||.|+|+|+++|++++|+.||+++...
T Consensus 312 ~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 312 HKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred ccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 9888889999999999999999999999999999998765
No 16
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=6.1e-39 Score=401.00 Aligned_cols=336 Identities=26% Similarity=0.426 Sum_probs=293.8
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEE-CCCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000173 1161 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1935)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~v~l-~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~ 1239 (1935)
+++|+.|+|+|..+.++++||++ ++++.|++|..++++.. ..++...|++|+.|+|+|+.++.+++++.||++.+.
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~- 91 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLE- 91 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhh-
Confidence 59999999999999999999999 88999999999998763 456777899999999999999999999999999763
Q ss_pred CCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000173 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319 (1935)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~ 1319 (1935)
....|......++ +|+++.|+|+++.++ |++|+++ |+.|++|++|+++.+..+ |.. + +
T Consensus 92 -~~~~~~~~~~~~~-----~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~-----------~~~-~-v 149 (390)
T PRK06676 92 -AEKAWDKLEEKFE-----EGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVED-----------FSD-F-K 149 (390)
T ss_pred -hhhhHHHHHHhcc-----CCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCC-----------hHH-c-C
Confidence 2245654434444 999999999999998 9999995 679999999998877655 432 4 8
Q ss_pred CCEEEEEEEEEecCCCCceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEeC
Q 000173 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399 (1935)
Q Consensus 1320 G~~v~~~Vl~vd~~~~g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~ 1399 (1935)
|+.+.|+|+++|++ ++++.||+|... ... ...++...+.++++|++|.|+|+++.++|+||.++
T Consensus 150 G~~v~~~Vl~~d~~---~~~i~lS~k~~~-----~~~--------~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~ 213 (390)
T PRK06676 150 GKTLEVKIIELDPE---KNRVILSRRAVV-----EEE--------RAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG 213 (390)
T ss_pred CCEEEEEEEEEECC---CCEEEEEeHHHh-----hhh--------hhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC
Confidence 99999999999976 579999999864 100 01233445577999999999999999999999996
Q ss_pred CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEE
Q 000173 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479 (1935)
Q Consensus 1400 ~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v 1479 (1935)
+++|+||+++++|.++.+|.+.|++|+.|+++|+++|++++++.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 214 -~v~g~v~~sels~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i 288 (390)
T PRK06676 214 -GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRL 288 (390)
T ss_pred -CeEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEE
Confidence 799999999999999999999999999999999999999999999999988777643 256899999999999999
Q ss_pred eeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1480 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1480 ~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
.+||+||++.+ ++.||||+|++++.++.++...|++||.|+|+|+++|++++||.||+|+...
T Consensus 289 ~~~G~fV~l~~-gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 289 TDFGAFVEVLP-GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred eCceEEEEECC-CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 99999999976 7999999999999988888899999999999999999999999999998644
No 17
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=7.3e-37 Score=400.89 Aligned_cols=336 Identities=24% Similarity=0.404 Sum_probs=295.3
Q ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000173 1160 DVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1935)
Q Consensus 1160 ~~~~G~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~~Ls~~~~~~ 1239 (1935)
.+++|+.|+|+|.++.++++||+++....|++|..+++++. ..++.+.|++|+.++|+|++++.+++++.||++.+..
T Consensus 299 ~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~ 376 (647)
T PRK00087 299 QIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR 376 (647)
T ss_pred hccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc
Confidence 36999999999999999999999999999999999998763 4567888999999999999999999999999998742
Q ss_pred CCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000173 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319 (1935)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~ 1319 (1935)
...|....+.++ +|+++.|+|+++.++ |++|+++. ++|++|.+|+++.+..+ |. .+ +
T Consensus 377 --~~~~~~l~~~~~-----~G~iv~g~V~~v~~~--G~~V~lgg-i~gfiP~sel~~~~~~d-----------~~-~~-v 433 (647)
T PRK00087 377 --EKAWKELEEAFE-----NGEPVKGKVKEVVKG--GLLVDYGG-VRAFLPASHVELGYVED-----------LS-EY-K 433 (647)
T ss_pred --hhHHHHHHHHhh-----CCCEEEEEEEEEECC--eEEEEECC-EEEEEEHHHhCccccCC-----------HH-Hh-C
Confidence 234554444444 999999999999998 99999984 99999999998887665 43 23 8
Q ss_pred CCEEEEEEEEEecCCCCceE-EEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEeeceEEEEe
Q 000173 1320 GQFVKCKVLEISRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIML 1398 (1935)
Q Consensus 1320 G~~v~~~Vl~vd~~~~g~~~-i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l 1398 (1935)
|+.+.|+|+++|++ +++ +.+|+|...... ...++...++++++|+++.|+|+++.++|+||++
T Consensus 434 G~~v~v~Vl~vd~e---~~~~l~lS~k~~~~~~-------------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l 497 (647)
T PRK00087 434 GQELEVKIIEFNRK---RRKKVVLSRKAILEEE-------------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI 497 (647)
T ss_pred CCEEEEEEEEEEcC---CCcEEEEEeHHHhhhh-------------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE
Confidence 99999999999986 456 999998874000 0123455667899999999999999999999999
Q ss_pred CCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEE
Q 000173 1399 SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKR 1478 (1935)
Q Consensus 1399 ~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~ 1478 (1935)
++++|++|+++++|.++.+|.+.|++||.|.++|+++|++++++.||+|+...+||.. ...++++|+++.|+|++
T Consensus 498 -~gv~Gll~~sels~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~ 572 (647)
T PRK00087 498 -GGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVR 572 (647)
T ss_pred -CCEEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999998887743 24678999999999999
Q ss_pred EeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccccc
Q 000173 1479 VESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1479 v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~ 1542 (1935)
+.+||+||+|.+ ++.||||++++++.++.++.+.|++||.|+|+|+++|++++||.||+|...
T Consensus 573 i~~~G~fV~l~~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~ 635 (647)
T PRK00087 573 IAPFGAFVELEP-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE 635 (647)
T ss_pred EECCeEEEEECC-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 999999999976 799999999999999999999999999999999999999999999999853
No 18
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=2.2e-36 Score=396.42 Aligned_cols=332 Identities=23% Similarity=0.284 Sum_probs=292.1
Q ss_pred ccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEec
Q 000173 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1935)
Q Consensus 490 ~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~ 567 (1935)
....+.+.+|++|+|+|.+++++|++|+++++.+|++|..|+++....+|.+.|++|++|+|+|+.+ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 4567789999999999999999999999998899999999999988889999999999999999999 46799999998
Q ss_pred ccccchhhHHhhhhh-cCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCC
Q 000173 568 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1935)
Q Consensus 568 ~l~~~~~~~~~~~~~-~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~ 646 (1935)
..... .|..+.+ +++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|+++.|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 76542 2444333 478999999999999999999995 699999999998876656654 3 999999999999999
Q ss_pred CCE-EEEEEeeCCC-----CC-ccccccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCccccccccccccc
Q 000173 647 SRR-INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719 (1935)
Q Consensus 647 ~~r-i~lS~k~~~~-----~~-~~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k 719 (1935)
+++ +.+|++.... ++ ...+.+++|+++.|+|.++.++|++|.+ ++++|+||.++++|.+.. .+.+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~--~~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVE--KPSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccC--CHHHhcC
Confidence 998 9999986421 11 1235678999999999999999999999 579999999999985532 2456799
Q ss_pred CCCeEe-eEEEeecCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCccc
Q 000173 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798 (1935)
Q Consensus 720 ~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~ 798 (1935)
+|+.++ +++.+|+.++++.||+|+.+.++|..+. +++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 7899999999999999999999987654 457899999999999999999999999999999999999999
Q ss_pred ccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 799 ~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+.++.+.|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997654
No 19
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.6e-31 Score=318.88 Aligned_cols=240 Identities=23% Similarity=0.384 Sum_probs=213.1
Q ss_pred ccCCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCC
Q 000173 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336 (1935)
Q Consensus 1257 l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g 1336 (1935)
+++|+++.|+|+++.+. |++|+||.+..|++|++|+++++..+ |.+.|++|+.|+|+|++++.+
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~-----------~~~~~~~G~~v~~~Vi~~~~~--- 92 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEG-----------PEEVLQPNETREFFILSDENE--- 92 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccC-----------HHHccCCCCEEEEEEEEEeCC---
Confidence 56999999999999998 99999999999999999999988776 778899999999999999875
Q ss_pred ceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccC-CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc
Q 000173 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415 (1935)
Q Consensus 1337 ~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~ 1415 (1935)
++++.||+|... ....|..+.++ +.|++|+|+|++++++|+||+++ +++||||++++||.+
T Consensus 93 ~~~i~lS~k~~~-----------------~~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~ 154 (318)
T PRK07400 93 DGQLTLSIRRIE-----------------YMRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK 154 (318)
T ss_pred CCeEEEehhhhh-----------------hhhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccC
Confidence 569999999874 01124455555 46999999999999999999996 999999999999975
Q ss_pred cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeE
Q 000173 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495 (1935)
Q Consensus 1416 ~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~G 1495 (1935)
.+ +.+ +|+.+.++|+++|++++++.||+|...... .+.++++|+++.|+|+++.+||+||.+. ++.|
T Consensus 155 ~~---~~~-vG~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~G 221 (318)
T PRK07400 155 PK---EEL-VGEELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSG 221 (318)
T ss_pred Cc---ccc-CCCEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEE
Confidence 43 334 999999999999999999999999766432 3678999999999999999999999994 6999
Q ss_pred EeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1496 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1496 l~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
|||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|....
T Consensus 222 llhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 222 LLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999999999999999999999999999998644
No 20
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.97 E-value=1.1e-30 Score=311.84 Aligned_cols=243 Identities=22% Similarity=0.305 Sum_probs=216.2
Q ss_pred Hhhhh-hcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEe
Q 000173 577 LSSYA-EATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1935)
Q Consensus 577 ~~~~~-~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k 655 (1935)
+.+|. .+++|+++.|+|+++.++||||+|+++..||+|.+++++.++.++.+.|++|++++|+|+++|++++++.||++
T Consensus 22 le~~~~~~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k 101 (318)
T PRK07400 22 LDKYDYHFKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIR 101 (318)
T ss_pred HHhhHhhcCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehh
Confidence 34443 37899999999999999999999988899999999999988889999999999999999999999999999999
Q ss_pred eCC--CCCcccc-ccCCCCeEEEEEEEEecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEe-eEEEee
Q 000173 656 MKP--TRVSEDD-LVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLD 731 (1935)
Q Consensus 656 ~~~--~~~~~~~-~~~~G~iv~g~V~~v~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~-~vl~~d 731 (1935)
... .+|.... ....|++|+|+|+.+.+.|++|.+ ++++||||.+|||+... .+. .+|+.|+ ++|.+|
T Consensus 102 ~~~~~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~-----~~~-~vG~~i~~kVl~id 172 (318)
T PRK07400 102 RIEYMRAWERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKP-----KEE-LVGEELPLKFLEVD 172 (318)
T ss_pred hhhhhhHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCC-----ccc-cCCCEEEEEEEEEE
Confidence 753 2344433 345699999999999999999999 58999999999998532 123 4999999 899999
Q ss_pred cCCCeEEEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCE
Q 000173 732 NESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQS 811 (1935)
Q Consensus 732 ~~~~~i~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~ 811 (1935)
++++++.||+|+.+.+. .+.++++|+++.|+|++|+++|+||++ +|+.||+|++++++.++.++.+.|++||.
T Consensus 173 ~~~~~i~lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~ 245 (318)
T PRK07400 173 EERNRLVLSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDE 245 (318)
T ss_pred cccCEEEEEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCE
Confidence 99999999999888643 356789999999999999999999999 68999999999999999999999999999
Q ss_pred EEEEEEEeeCCCCeEEEeeccccc
Q 000173 812 VRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 812 V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
|+|+|+++|.+++|+.||+|....
T Consensus 246 VkvkVl~iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 246 MKVMIIDLDAERGRISLSTKQLEP 269 (318)
T ss_pred EEEEEEEEeCCCCEEEEEEecccc
Confidence 999999999999999999998865
No 21
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.3e-23 Score=240.80 Aligned_cols=258 Identities=26% Similarity=0.426 Sum_probs=218.4
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH---------------------
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--------------------- 1725 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl--------------------- 1725 (1935)
+...++..|+|.+..+|+ ...|++|+.|++..|.+.-||.+|+||+..+...++.|++
T Consensus 189 eieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy 267 (677)
T KOG1915|consen 189 EIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY 267 (677)
T ss_pred HHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999888887 5789999999999998888888888888633322211111
Q ss_pred -------------------------------------------------------HHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1726 -------------------------------------------------------NIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1726 -------------------------------------------------------~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
+.|..|+.|+...| +.++.+++|
T Consensus 268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g--~~~~Ire~y 345 (677)
T KOG1915|consen 268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG--DKDRIRETY 345 (677)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC--CHHHHHHHH
Confidence 68999999988888 569999999
Q ss_pred HHHHhcCCCH---HHHHH-------HHHHH-HHcCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1751 QRALQYCDPK---KVHLA-------LLGLY-ERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1751 erAl~~~~~~---~v~~~-------l~~i~-~~~~~~~~A~el~~~~~k~~~----~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
+||+...|+. +.|.. |+-+. ....+.+.++++|+++++..| ...++|+.||.|++++ +...||+
T Consensus 346 ErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARk 425 (677)
T KOG1915|consen 346 ERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARK 425 (677)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHH
Confidence 9999998873 44444 43322 356889999999999999877 4589999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1815 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
++-+|+..+|+. +++..|..++.+.++++++|.+||+.|...|.+...|..|+.+|..+|+.++||.+|+-|+++..
T Consensus 426 iLG~AIG~cPK~---KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 426 ILGNAIGKCPKD---KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHhccCCch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 999999999988 79999999999999999999999999999999999999999999999999999999999998432
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
- .-...+|+.||+||...|..+.++.+|+|-++..+
T Consensus 503 l-dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 503 L-DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred c-ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 1 22337899999999999999999999999987543
No 22
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.5e-22 Score=228.36 Aligned_cols=245 Identities=23% Similarity=0.389 Sum_probs=218.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1673 ~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
..||..++.+.-+...|++|++|+.+++++..||.+|+|||. ..++. ..+|+.|+.+|.... ...-|+.++.|
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALd-vd~r~----itLWlkYae~Emknk--~vNhARNv~dR 132 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALD-VDYRN----ITLWLKYAEFEMKNK--QVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-ccccc----chHHHHHHHHHHhhh--hHhHHHHHHHH
Confidence 456777777888889999999999999999999999999995 44444 579999999999998 66999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
|+...|- .++|+.|+-+.+..|+..-|+++|++-+.- ......|+.|+.|.++. ..+.||.+|+|-+-.+|+- +
T Consensus 133 Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w-~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v---~ 208 (677)
T KOG1915|consen 133 AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW-EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKV---S 208 (677)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccH---H
Confidence 9999997 599999999999999999999999999964 45788999999999999 9999999999999888655 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
.|++||.|+.++|+...||.+|++|+....+.. .+...||.+|..+..+++||.+|.-||. .+|..++..+|+.|.
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld-~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD-HIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHH
Confidence 999999999999999999999999999887753 3799999999999999999999999998 677677779999999
Q ss_pred HHHHHcCCHHHHHHH--HHHHHHH
Q 000173 1908 EYEKSVGEEERIEYV--KQKAMEY 1929 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v--~~rAle~ 1929 (1935)
.||+++||...++.+ ..|-++|
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHH
Confidence 999999998776643 3444444
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=1.8e-19 Score=215.56 Aligned_cols=249 Identities=18% Similarity=0.264 Sum_probs=206.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..-++..|..+|+..|..-.+|++.+.|....|-.+.-..++++|+.+.|..+ .+|+.|+......| +...|+
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae-----~lwlM~ake~w~ag--dv~~ar 604 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE-----ILWLMYAKEKWKAG--DVPAAR 604 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch-----hHHHHHHHHHHhcC--CcHHHH
Confidence 55677788888888888888888888888888888888888888888887544 48888888887778 558888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.++.+|++++|.. .+|++...+...+.+++.|+.+|.++... .....+|+.++.++..+ +.++|++++++||+++|.
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~ 683 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD 683 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 8888888888764 88888888888888888888888888764 45778888888888888 888888888888888887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
.. ++|+..+|++.++++.+.||..|...++.+|....||..++.++.+.|..-+||.+|+|+.- -+|++. .+|..
T Consensus 684 f~--Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~-~lwle 758 (913)
T KOG0495|consen 684 FH--KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNA-LLWLE 758 (913)
T ss_pred hH--HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcc-hhHHH
Confidence 73 88888888888888888888888888888888888888888888888888888888888877 666777 78888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
-+.+|.+.|+.+.|+.+..+|++-
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888888764
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=1.4e-18 Score=208.06 Aligned_cols=235 Identities=23% Similarity=0.281 Sum_probs=216.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
.+.-.+.|++++..-|.+..+|+.|+.-....|++..||.+..+|.+..|.++ .+|++-..++....+ .++|+
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse-----eiwlaavKle~en~e--~eraR 638 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE-----EIWLAAVKLEFENDE--LERAR 638 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH-----HHHHHHHHHhhcccc--HHHHH
Confidence 33444577888888999999999999999999999999999999999888655 499999999999985 49999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+|.+|....+...+|++.+++..-.+..++|..+++++++.||...++|+.+++.+.+. +.+.||+.|...++.+|.+
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
+.+|..++.++.+.|.+-+||.+|+++.-.+|++..+|...++||++.|+.+.|+.+.-+||+ -.|... .+|..-
T Consensus 719 --ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg-~LWaEa 793 (913)
T KOG0495|consen 719 --IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSG-LLWAEA 793 (913)
T ss_pred --chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccc-hhHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999998 444555 588888
Q ss_pred HHHHHHcC
Q 000173 1907 LEYEKSVG 1914 (1935)
Q Consensus 1907 l~~E~~~G 1914 (1935)
|-+|...+
T Consensus 794 I~le~~~~ 801 (913)
T KOG0495|consen 794 IWLEPRPQ 801 (913)
T ss_pred HHhccCcc
Confidence 87765543
No 25
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.78 E-value=1.9e-17 Score=198.75 Aligned_cols=263 Identities=19% Similarity=0.321 Sum_probs=217.7
Q ss_pred ccCCCCcHHHHHHHHHcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh--------------hHHH
Q 000173 1665 EKDAPRTPDEFERLVRSS-PN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN--------------EKLN 1726 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~-P~---s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~--------------Ekl~ 1726 (1935)
+++...|+..|++++..+ |. -...|.+++..++...+++.|+.+.++|. ..|.+.+. ..+.
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 344788999999998654 33 37889999999999999999999999999 56655221 1248
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQR 1803 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~-~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~ 1803 (1935)
+|..|+.++..+| +.++.+.+|+|.+.+.- .-++-+.|+.+++.+.-++++...|++.+..| |...++|..|..-
T Consensus 479 iWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 479 IWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 9999999999999 67999999999998754 45899999999999999999999999999887 6789999999998
Q ss_pred HHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH--------------------------------
Q 000173 1804 LLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR-------------------------------- 1847 (1935)
Q Consensus 1804 l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~-------------------------------- 1847 (1935)
+..+ +++.||.+|++||..||....-.+|+.||+||.+.|-..+
T Consensus 557 fi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 8877 9999999999999999965434789999999999886444
Q ss_pred ----HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1848 ----GRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1921 (1935)
Q Consensus 1848 ----Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~ 1921 (1935)
.|.+|++|+++.|.. .+....|++||.+.|.+++||.+|--+-. -++|+..-.+|..|=+||.+|||.+..++
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq-~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ-ICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh-cCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 456666668888875 34689999999999999999999998877 45555544899999999999999988887
Q ss_pred HHHHHHHHHHh
Q 000173 1922 VKQKAMEYVES 1932 (1935)
Q Consensus 1922 v~~rAle~v~~ 1932 (1935)
++. ....|++
T Consensus 716 MLR-ikRsvqa 725 (835)
T KOG2047|consen 716 MLR-IKRSVQA 725 (835)
T ss_pred HHH-HHHHHHH
Confidence 763 3344444
No 26
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=5.9e-16 Score=186.04 Aligned_cols=239 Identities=18% Similarity=0.250 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-------- 1758 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~-------- 1758 (1935)
.+|..|+.||...++++.||.+|++|+ ..||..-.+-.++|++|+.+|....++ +.|..+.++|+..--
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~-~V~y~~v~dLa~vw~~waemElrh~~~--~~Al~lm~~A~~vP~~~~~~~yd 464 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKAT-KVPYKTVEDLAEVWCAWAEMELRHENF--EAALKLMRRATHVPTNPELEYYD 464 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhh-cCCccchHHHHHHHHHHHHHHHhhhhH--HHHHHHHHhhhcCCCchhhhhhc
Confidence 455555555555555555555555555 344444333335555555555555532 555555555543210
Q ss_pred -----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1759 -----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1759 -----------~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+..+|..|+++.+..|-++..+.+|.+++..--..+.+-.+||.|+..+ -++++-++|+|.+..++..
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 0145555555555555555555555555544444555555555555555 5555555555555555443
Q ss_pred ChHHHHHHHHHH-HHHcC--CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 000173 1827 KHIKFISQTAIL-EFKNG--VADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1827 ~~~~~~~~~a~l-e~~~g--~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
.-.++|..|..- --+.| .+|+||.+||+||..+|.. ..++..|+++|.+.|-..+|..+|+||.. ...+.++-.
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~ 623 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLD 623 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHH
Confidence 333455544432 12333 4555555555555555421 12455555555555555555555555554 344444445
Q ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHHH
Q 000173 1902 LFKKYLEY-EKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1902 l~~~yl~~-E~~~G~~e~a~~v~~rAle~v 1930 (1935)
+|+.||.- +.-+|-. .-+.+|++|++.+
T Consensus 624 myni~I~kaae~yGv~-~TR~iYekaIe~L 652 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVP-RTREIYEKAIESL 652 (835)
T ss_pred HHHHHHHHHHHHhCCc-ccHHHHHHHHHhC
Confidence 55555532 2223322 2345555555543
No 27
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.67 E-value=8.1e-15 Score=161.77 Aligned_cols=231 Identities=17% Similarity=0.148 Sum_probs=185.6
Q ss_pred cCCCcEEEEEEEEEecceEEEEEcCCe-EEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCC
Q 000173 583 ATDRLITHGWITKIEKHGCFVRFYNGV-QGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661 (1935)
Q Consensus 583 ~~~G~~~~g~V~~i~~~G~~V~~~~~v-~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~ 661 (1935)
..+|++....|.+..++|+|++=.++- .-++|+++.-. +...+|+.|++-|. .| .++|+.++.+.
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~-------~e~evGdev~vFiY-~D-~~~rl~aTt~~----- 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEE-------DELEVGDEVTVFIY-VD-SEDRLIATTRE----- 68 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcC-------CccccCcEEEEEEE-EC-CCCceeheeec-----
Confidence 368999999999999999999864332 67888887632 24779999999876 35 45678888764
Q ss_pred ccccccCCCCeEEEEEEEEe-cCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEe
Q 000173 662 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740 (1935)
Q Consensus 662 ~~~~~~~~G~iv~g~V~~v~-~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls 740 (1935)
+.+++|+.-.++|+++. ..|+||.. +=.-+-+||..+|+.... -|+++||++-.-|.+|+.+ | ++
T Consensus 69 ---p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~~------~wpq~Gd~l~v~l~~Dkk~-R--i~ 134 (287)
T COG2996 69 ---PKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLKS------LWPQKGDKLLVYLYVDKKG-R--IW 134 (287)
T ss_pred ---ceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhcccccc------cCCCCCCEEEEEEEEccCC-c--EE
Confidence 67889999999999998 67999998 546889999999985332 2789999999888999888 3 34
Q ss_pred ccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEee
Q 000173 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820 (1935)
Q Consensus 741 ~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd 820 (1935)
.+...-+..+.++..+.+--.|+.++|+|+++...|.||-..++.-||+|+|+.-.+ .+.||.+++||+.+.
T Consensus 135 g~~a~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~~--------prlG~~l~~rVi~~r 206 (287)
T COG2996 135 GTLAIEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFAE--------PRLGERLTARVIGVR 206 (287)
T ss_pred EEecchhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhccc--------ccCCceEEEEEEEEc
Confidence 444444444445544333335999999999999999999999999999999988543 589999999999998
Q ss_pred CCCCeEEEeecccccCC--CCchhhHHHHHHH
Q 000173 821 SETGRITLSLKQSCCSS--TDASFMQEHFLLE 850 (1935)
Q Consensus 821 ~e~~rl~LSlk~~~~~~--~d~~~i~~~l~~~ 850 (1935)
+ +++|.||+++..... .|+++|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 6 999999999987654 8899999999865
No 28
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=6.3e-15 Score=175.85 Aligned_cols=179 Identities=16% Similarity=0.105 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+-|...|+||+...|.+ ..|..|++.+...|+..+|...|.+++...++.++...+++..+.++ .++.|..+|..|+.
T Consensus 303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 44444444444444443 44444444444444444444444444444444444444444444444 44444444444444
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
.+|... ....++|.++-++|++++|...|..+|+..|...|.++.....+-..|+.+.|...|+|||. ..|.-+ .
T Consensus 383 v~p~~a--aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~A-e 457 (966)
T KOG4626|consen 383 VFPEFA--AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFA-E 457 (966)
T ss_pred hChhhh--hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHH-H
Confidence 444432 34444444444444444444444444444444444444444444444444444444444444 444333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1902 LFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1902 l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.+.......+..|+..+|..-|+.|+
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 44444444444444444444444443
No 29
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.64 E-value=8e-15 Score=174.97 Aligned_cols=253 Identities=13% Similarity=0.061 Sum_probs=156.7
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc------------------hhh-------
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE------------------ENE------- 1723 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e------------------e~E------- 1723 (1935)
.++.+.|+.++...|+..++|++++..+...|+.+.|...|..||+..|.-- ..+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 3455566666666666666666666666666666666666666654333100 000
Q ss_pred ----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1724 ----KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1798 (1935)
Q Consensus 1724 ----kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~ 1798 (1935)
-.-.|..+.-..+..| ..-.|.+-|++|++..|.+ ..|+.++++|...+.+++|...|.+++..-|++..++-
T Consensus 213 ~qp~fAiawsnLg~~f~~~G--ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQG--EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred hCCceeeeehhcchHHhhcc--hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 0134555555555566 3466666666666666664 66666666666666666666666666666666666666
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+++..|.++ .++-|...|+|||...|.. +.++-++|..+-..|+..+|...|.++|..+|...|..+.++..+...|
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNF--PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 666666666 6666666666666666655 3666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.++.|..+|+.+++ ..|.-+ ..++....+.+++|+.++|...|..|+.
T Consensus 369 ~~e~A~~ly~~al~--v~p~~a-aa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFA-AAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred cchHHHHHHHHHHh--hChhhh-hhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 66666666666666 555555 4566666666666666666666666654
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=9.1e-14 Score=185.80 Aligned_cols=252 Identities=12% Similarity=0.033 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1668 APRTPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1668 ~~~a~~~ferll~~---~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
..++...|++++.. .|+....|..++.++...|++++|+..|++++...|. . ...|+.+..+....| ..+
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~----~~~~~~la~~~~~~g--~~~ 382 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V----TQSYIKRASMNLELG--DPD 382 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c----HHHHHHHHHHHHHCC--CHH
Confidence 33556778888764 4778888888888889999999999999999865442 1 357888888888888 458
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. .+|..++.+|...|++++|...|++++...|.+...|+.++..+.+. ++++|...|+++++.
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999888764 88888999999999999999999999998888888999999888888 999999999999988
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-------WSIYLDQEIRLGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl-------w~~ya~~e~k~g~~e~ar~lferal~~~~~ 1895 (1935)
+|.. ..+|..+|.++...|++++|...|++++...|..... |.....++...|++++|..+|++++. +.
T Consensus 463 ~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~ 538 (615)
T TIGR00990 463 FPEA--PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--ID 538 (615)
T ss_pred CCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cC
Confidence 8876 4788888999999999999999999999888864332 22222333346889999999999888 56
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1896 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1896 pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|... ..|..+.......|+.+.|...|++|++...
T Consensus 539 p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 539 PECD-IAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred CCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 6665 4677778888888999999999988877654
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=2e-13 Score=182.44 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1730 AYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1730 ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.+..++...| ..+.|...|++|++..|.. ..|+.++.++...+++++|.+.|++++...|..+.+|+.++.+++..
T Consensus 336 ~lg~~~~~~g--~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 336 LRGTFKCLKG--KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3333444445 3356666666666665553 56666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
++++|...|++++...|.. ...|..+|.++++.|++++|...|++++..+|.+.++|..++.++...|++++|+..|+
T Consensus 414 ~~~~A~~~~~kal~l~P~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDF--IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred CHHHHHHHHHHHHHcCccC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6666666666666666554 35566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCchh------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKK------MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1888 ral~~~~~pk~------~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+++. +.|.. ...++...+.+....|+++.|..++++|++
T Consensus 492 ~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 492 TAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 6665 32221 101222233333334566666666666543
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=4.6e-13 Score=169.43 Aligned_cols=258 Identities=14% Similarity=0.153 Sum_probs=219.5
Q ss_pred HhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC
Q 000173 1663 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1663 ~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
...++..+|...|++++..+|++..+|..++.++...+++++|..++++++.. +..........|..++..+...| .
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g--~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG--L 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC--C
Confidence 33456778999999999999999999999999999999999999999999964 32222233467888888888999 4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHc-CHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGVQAV 1815 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-----~~vw~~~~~~l~~~-~~e~A~~l 1815 (1935)
.+.|..+|+++++..+.. ..|..++.+|.+.+++++|.+.|+++++..+.. ...|..++..+... ++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 599999999999987664 889999999999999999999999999877644 23566788888888 99999999
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
|+++++..|.. ...+..+|.++.+.|++++|..+|++++...|.. ..+|..++..+...|+.+.|...|++++. .
T Consensus 203 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 278 (389)
T PRK11788 203 LKKALAADPQC--VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--E 278 (389)
T ss_pred HHHHHhHCcCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 99999998875 5789999999999999999999999999988876 45788889999999999999999999998 5
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|... .+..+..+..+.|+.+.|..+++++++.
T Consensus 279 ~p~~~--~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 279 YPGAD--LLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCCch--HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 55543 3467778888899999999999988765
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.61 E-value=2.8e-13 Score=180.76 Aligned_cols=250 Identities=9% Similarity=0.009 Sum_probs=191.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+.++|...|++++..+|++..+|..++..+.+.|++++|...+++++...|... ..|...+. ....| ..++|
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-----~a~~~~~~-l~~~g--~~~eA 196 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-----DMIATCLS-FLNKS--RLPED 196 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-----HHHHHHHH-HHHcC--CHHHH
Confidence 355566666666666666666666666666666666666666666654444221 12322222 34556 34777
Q ss_pred HHHHHHHHhcCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH----HHHHHHHH
Q 000173 1747 VKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG----VQAVVQRA 1819 (1935)
Q Consensus 1747 ~~vferAl~~~~~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~----A~~ll~ra 1819 (1935)
...|+++++..+. ...+..++.++...+++++|...|.+++...|+...+|+.++..+... ++++ |...|+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 7777777776542 244455567788899999999999999999999999999999999998 7775 89999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+...|.+ ..+|..+|.++...|++++|...|+++++..|.+..+|..++..+.+.|+++.|...|++++. ..|...
T Consensus 277 l~l~P~~--~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~ 352 (656)
T PRK15174 277 LQFNSDN--VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTS 352 (656)
T ss_pred HhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccch
Confidence 9999876 589999999999999999999999999999999999999999999999999999999999998 666655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.++..........|+.+.|...|++|++.
T Consensus 353 -~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 -KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34444455567789999999999998765
No 34
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.59 E-value=6.4e-13 Score=177.28 Aligned_cols=250 Identities=11% Similarity=0.075 Sum_probs=200.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|+++..|..++..+.+.|++++|+..|++|+...|.. ..+|..+++++...|+ .+.
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g~--~~e 162 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMDK--ELQ 162 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCCC--hHH
Confidence 446677778888888888888888888888888888888888888888654421 3477777888888884 488
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~-~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
|...|++++...|.. ..|..+ ..+.+.|++++|...|.+++..++ .....+..++..+... ++++|...|++++..
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888887776654 444443 346777888888888888877764 3333444556667777 899999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADR----GRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~----Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
.|.. ..++..+|.+++..|++++ |...|+++++..|.+..+|..|+.++...|++++|...|++++. +.|..
T Consensus 242 ~p~~--~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~ 317 (656)
T PRK15174 242 GLDG--AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDL 317 (656)
T ss_pred CCCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8876 6899999999999999885 89999999999999999999999999999999999999999998 77777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
. ..+..+.......|+.+.|...|+++++
T Consensus 318 ~-~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 318 P-YVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred H-HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7 5777788888889999999999998875
No 35
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.58 E-value=1.1e-14 Score=173.95 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
-+|+.|..|..+. ..+.||.+|++|++..+.. ..+|..+|.+|+. .++.+.|+.+||++++.+|.+.++|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3799999999999 9999999999999543333 5899999999999 5678889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~-~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+++.++.+.||.+|||++. .++++. ++.+|++|++||.++|+.+.+..+++|+.+++..
T Consensus 80 l~~~~d~~~aR~lfer~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998 577777 8899999999999999999999999999998753
No 36
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.55 E-value=8.3e-16 Score=179.20 Aligned_cols=148 Identities=17% Similarity=0.256 Sum_probs=128.1
Q ss_pred ccCC-CCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1374 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1374 ~~lk-~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
+.+. +|++|.|.|++|.++|+||.|. ++++|+||+++|||.++.++++.+++||.|.|+|+++|+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 3566 7999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCcEEEeEEEEEee-ceEEEE------EecCceeEEeeccccCcccccCcccccC---CCCEE
Q 000173 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1520 (1935)
Q Consensus 1451 ~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~FV~------l~~~~v~Gl~h~sels~~~~~~~~~~~~---~Gd~V 1520 (1935)
..+||... ...++.|+++.|.|+++.+ ||+|++ .-+ .+.++.|.++++...+.+....|. +++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 99888654 5689999999999999955 999997 334 688999999998887777665666 66655
Q ss_pred EEEEEE
Q 000173 1521 KVKILK 1526 (1935)
Q Consensus 1521 ~~~Il~ 1526 (1935)
+..++.
T Consensus 167 ~~~l~~ 172 (319)
T PTZ00248 167 KESLLQ 172 (319)
T ss_pred HHHHHH
Confidence 544433
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=2.2e-14 Score=172.80 Aligned_cols=254 Identities=19% Similarity=0.285 Sum_probs=121.3
Q ss_pred ccCCCCcHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC
Q 000173 1665 EKDAPRTPDEFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~--~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
.++.++|...+.+.+.. .|++...|..++......++++.|+..|++.+..-+.+ ......++.+ ...+++
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~-----~~~~~~l~~l-~~~~~~- 93 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN-----PQDYERLIQL-LQDGDP- 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccc-cccccc-
Confidence 45577888888766654 48999999999999999999999999999999754432 2356667777 567744
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
++|.++++++.+..+....|..++.+|.+.++++++.++++++.... +.++.+|..++.++.+. +.++|...|++|
T Consensus 94 -~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 94 -EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred -cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999999877777888899999999999999999999977543 67899999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
++..|.+ ..++..++.++...|+.++++.+++.+....|.+..+|..|+..+...|+.++|..+|++++. ..|++.
T Consensus 173 l~~~P~~--~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~ 248 (280)
T PF13429_consen 173 LELDPDD--PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDP 248 (280)
T ss_dssp HHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-H
T ss_pred HHcCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccc
Confidence 9999987 488999999999999999999999999999999999999999999999999999999999998 777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.+...|.+.....|..+.|..++.+|++.+.
T Consensus 249 -~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 249 -LWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp -HHHHHHHHHHT--------------------
T ss_pred -ccccccccccccccccccccccccccccccC
Confidence 6888999999999999999999999988764
No 38
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=5.1e-15 Score=143.86 Aligned_cols=75 Identities=35% Similarity=0.696 Sum_probs=71.6
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.+++|+.+.+++||.|+|+|+++| ++++|+||||..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~id-e~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-ENGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeec-cCCCcceehHHh
Confidence 57899999999999999999999986 7899999999999999999999999999999999999 599999999985
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.54 E-value=1.4e-12 Score=182.76 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=199.4
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+.+++...|++++..+|++...|..++..+...+++++|..+++++....+.. ...|..+..+....|+ .+.|
T Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~--~~~A 722 (899)
T TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKA-----ALGFELEGDLYLRQKD--YPAA 722 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC-----hHHHHHHHHHHHHCCC--HHHH
Confidence 35556666666666667666777777776666777777777766666544321 2456666777777784 4888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
...|+++++..|....+..++.+|.+.|++++|.+.++++++..|.+..+++.++..+... ++++|...|+++++..|.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 8888888888887788888888888899999999999999988888888999999888888 999999999999988886
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
+ +.++..++.++...|+ ++|..+|++++...|.+..+|..++.++...|++++|..+|++++. ..|... .++..
T Consensus 803 ~--~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~-~~~~~ 876 (899)
T TIGR02917 803 N--AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAA-AIRYH 876 (899)
T ss_pred C--HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCh-HHHHH
Confidence 5 5788888888888888 7799999999999999888999999999999999999999999998 555555 57888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
+.....+.|+.++|+.++++++
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 8888888899999999988876
No 40
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.53 E-value=1.9e-12 Score=181.27 Aligned_cols=250 Identities=15% Similarity=0.069 Sum_probs=167.1
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..++...|++++..+|++...|..++..+...+++++|...|++++...|.. ...|..++.++...| ..+.|
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A 552 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKN-----LRAILALAGLYLRTG--NEEEA 552 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHHHHHcC--CHHHH
Confidence 35566667777777777777777777777777777777777777777554421 246666666666666 34777
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|+++++..|.. ..|..++.+|...+++++|.++|+++++.++.+...|..++..+... ++++|...|+++++..|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 553 VAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77777777666553 66666777777777777777777777776666777777777777766 77777777777777666
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
.+ +..|..++.++...|++++|..+|++++...|.+...|..++.++...|+.+.|..+|+++.. ..|... ..|.
T Consensus 633 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~ 707 (899)
T TIGR02917 633 DS--ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAA-LGFE 707 (899)
T ss_pred CC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCh-HHHH
Confidence 54 366667777777777777777777777777777767777777777767777777766666665 333333 3455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.........|+.+.|...|+++++
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555556666666666666554
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.51 E-value=4.5e-12 Score=180.47 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=141.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhH-------HHHHHH--HHHHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------LNIWVA--YFNLE 1735 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ek-------l~lW~a--yl~le 1735 (1935)
.++..+|...|++++..+|++..+|..++..+.+.+++++|+..|++|++..|......+ ...|.. .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 355788999999999999999999999999999999999999999999986653221111 012222 23344
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-----------
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----------- 1803 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~----------- 1803 (1935)
...| ..+.|...|++|++..|.. ..|..++.+|...+++++|.+.|+++++..|.+...|..++.+
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 5566 4477788888888777654 6677777777777777777777777777777666665544333
Q ss_pred -------------------------------HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1804 -------------------------------LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1804 -------------------------------l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
+... ++++|.+.|+++++..|.+ +.++..+|.++++.|++++|...
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Confidence 2234 6677777777777777765 36667777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHH
Q 000173 1852 FEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ 1868 (1935)
|++++...|.+.+.+..
T Consensus 518 l~~al~~~P~~~~~~~a 534 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYA 534 (1157)
T ss_pred HHHHHHcCCCCHHHHHH
Confidence 77777666665554433
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.51 E-value=4.7e-12 Score=180.30 Aligned_cols=258 Identities=10% Similarity=0.076 Sum_probs=193.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhH--------------------
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEK-------------------- 1724 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ek-------------------- 1724 (1935)
.++..+|...|++++..+|++...|..++..+...+++++|+..|++|++..|.....-.
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 455788999999999999999999999999999999999999999999976554221000
Q ss_pred -----------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 000173 1725 -----------------LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKM 1786 (1935)
Q Consensus 1725 -----------------l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~ 1786 (1935)
...|..........| ..++|.+.|++|++..|.. .+|+.++.+|.+.|++++|...|+++
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 011112223344567 4599999999999999875 88999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHH----------------------------------------HHhCCC
Q 000173 1787 IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA----------------------------------------LLSLPR 1825 (1935)
Q Consensus 1787 ~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra----------------------------------------lk~~p~ 1825 (1935)
++..|.++..|+.++.++... +.++|...|+++ +...|.
T Consensus 522 l~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 522 AQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 998888888888777666555 666665555432 122333
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
+ +.++..+|.++.+.|++++|+..|+++++..|.+.++|..++.++...|+.++|+.+|++++. ..|... ..+..
T Consensus 602 ~--~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~-~~~~~ 676 (1157)
T PRK11447 602 S--TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSL-NTQRR 676 (1157)
T ss_pred C--chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCCh-HHHHH
Confidence 3 356777777888888888888888888888888888888888888888888888888887776 555544 45555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+.......|+.++|..+|++++..
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhh
Confidence 555556677777777777777654
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=4.2e-12 Score=172.82 Aligned_cols=247 Identities=13% Similarity=0.010 Sum_probs=204.8
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..++...|.+++...|++. .++.++..+.+.|++++|...|++++...+. . ..|..+..+....| +.+.|
T Consensus 491 ~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~-----~a~~~la~all~~G--d~~eA 561 (987)
T PRK09782 491 LPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-N-----EDLLAAANTAQAAG--NGAAR 561 (987)
T ss_pred CcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-c-----HHHHHHHHHHHHCC--CHHHH
Confidence 34467788999999899753 3555566667899999999999998754332 2 25788888888889 55999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|+++++..|.. ..+..++..+.+.|++++|...|++++...|. ...|..++..+.+. ++++|...|++++...|
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999988765 55555555666779999999999999999986 99999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
.+ ..++..+|.++...|++++|..+|+++++..|.+.++|..++..+...|+++.|+..|++++. +.|..+ .+-.
T Consensus 641 d~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a-~i~~ 715 (987)
T PRK09782 641 NN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQA-LITP 715 (987)
T ss_pred CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCc-hhhh
Confidence 88 589999999999999999999999999999999999999999999999999999999999998 777776 4666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.+..++....+++.+..-+.|+..
T Consensus 716 ~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 716 LTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666666666666543
No 44
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.48 E-value=3.7e-12 Score=141.04 Aligned_cols=216 Identities=19% Similarity=0.141 Sum_probs=167.6
Q ss_pred ccCCCEEEEEEEEEEcCcCeEEEEeCCce-EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCC
Q 000173 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335 (1935)
Q Consensus 1257 l~~G~iv~g~V~~v~~~~~g~~V~l~~~~-~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~ 1335 (1935)
+.+|++....|.+.+.. |+|++-+.+- .-++|-++.. .....+|++|.+.|+- |.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~------------------~~e~evGdev~vFiY~-D~--- 58 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPE------------------EDELEVGDEVTVFIYV-DS--- 58 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCc------------------CCccccCcEEEEEEEE-CC---
Confidence 44999999999999999 9999987643 4455555431 1235699999999886 54
Q ss_pred CceEEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEe-eceEEEEeCCCcEEEEECccCCCc
Q 000173 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDG 1414 (1935)
Q Consensus 1336 g~~~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~~v~g~V~~s~lsd~ 1414 (1935)
.+++.++++.+. ..+|+.-.+.|+.+. +-|+||+.|-.-+.+|+++++...
T Consensus 59 -~~rl~aTt~~p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~ 110 (287)
T COG2996 59 -EDRLIATTREPK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTL 110 (287)
T ss_pred -CCceeheeecce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccc
Confidence 357888876664 568999999999998 789999999999999999998853
Q ss_pred ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCcee
Q 000173 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLV 1494 (1935)
Q Consensus 1415 ~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~ 1494 (1935)
.--. +++|+.+-+. +.+|. .+||..+++.-..-. ........+ -.+|.+.|+|.+....|.||-+++ +.-
T Consensus 111 ~~~w----pq~Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~--~l~~~~~~~-l~nq~v~~tVYr~~~~G~fv~~e~-~~~ 180 (287)
T COG2996 111 KSLW----PQKGDKLLVY-LYVDK-KGRIWGTLAIEKILE--NLATPAYNN-LKNQEVDATVYRLLESGTFVITEN-GYL 180 (287)
T ss_pred cccC----CCCCCEEEEE-EEEcc-CCcEEEEecchhHHH--hcCCccchh-hhcCeeeeEEEEEeccceEEEEcC-CeE
Confidence 2112 4699999998 57886 559999887644321 100001111 259999999999999999999975 899
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1495 Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
|++|.||.... .+.|++++++|+.+. ++++|.||+++.-+
T Consensus 181 GfIh~sEr~~~--------prlG~~l~~rVi~~r-eDg~lnLSl~p~~~ 220 (287)
T COG2996 181 GFIHKSERFAE--------PRLGERLTARVIGVR-EDGKLNLSLRPRAH 220 (287)
T ss_pred EEEcchhhccc--------ccCCceEEEEEEEEc-cCCeeecccccccH
Confidence 99999997644 689999999999998 59999999999644
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.5e-12 Score=160.14 Aligned_cols=254 Identities=17% Similarity=0.104 Sum_probs=219.7
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---------------------------
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------------------- 1720 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--------------------------- 1720 (1935)
--+|...|+++-...+|......+.+..|+++.++++|+++|+++-+.-|++-
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44567788885566788887778999999999999999999999988666651
Q ss_pred --hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH
Q 000173 1721 --ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW 1797 (1935)
Q Consensus 1721 --e~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw 1797 (1935)
+..+-+-|+++.|++..++ +-++|.+.|+||+|..|.+ =.|.-++.=+.....++.|...|..++...+....+|
T Consensus 415 ~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 1111278999999999998 4599999999999999976 4455555566788899999999999999999999999
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+-++..|+++ +++.|.-.|++|+..+|.+- .+...++.++.+.|+.|+|..+|++|+..+|++..-.+.-+.+++..
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 9999999999 99999999999999999983 78888899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1877 g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+++++|...||.+-. +.|+.+ ..|........+.|..+.|..-|--|++
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es-~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQES-SVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchH-HHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 999999999999887 888888 6777777888889988888777766654
No 46
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.47 E-value=9.1e-12 Score=148.59 Aligned_cols=239 Identities=19% Similarity=0.271 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHcC------CH--HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC-------C-----CHHH
Q 000173 1686 SFVWIKYMAFMLSMA------DV--EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-------P-----PEEA 1745 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~------e~--dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~-------~-----~~e~ 1745 (1935)
..+|.+++.|+..+. .+ .+..-+|++++...++.. .+|..|..+....+. . -.++
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p-----eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP-----EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 478999999987554 11 233457899998888766 499988877665551 0 1578
Q ss_pred HHHHHHHHHhcCCC--HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYCDP--KKVHLALLGLYERTEQ---NKLADELLYKMIKKFK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1746 a~~vferAl~~~~~--~~v~~~l~~i~~~~~~---~~~A~el~~~~~k~~~-~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
+..+|+|++..... ..+|+++++..+..-+ ++..-+.|+++++++. +..-+|..|..+..+. -+..||.+|.+
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k 391 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK 391 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999977554 3889999988776555 8999999999999884 5566799999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1819 ALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
|-+.--... .++...|-+|+ -.+|.+-|-.+|+-.|..+++....-+.|+++++..++-..||.+|||++...+++.
T Consensus 392 aR~~~r~~h--hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 392 AREDKRTRH--HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HhhccCCcc--hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 987654443 67777777776 567999999999999999999999999999999999999999999999999668999
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
+.+.+|.+||+||...||...+..+-.|-....+
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888777655443
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.46 E-value=2e-11 Score=166.33 Aligned_cols=246 Identities=12% Similarity=0.006 Sum_probs=213.1
Q ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1671 TPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1671 a~~~ferll~~~P~--s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
+...+.+++...|. ++..|..++.++.. ++.++|...|.+++...|. . ..++.++......| ..+.|..
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~-----~~~L~lA~al~~~G--r~eeAi~ 530 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-A-----WQHRAVAYQAYQVE--DYATALA 530 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-h-----HHHHHHHHHHHHCC--CHHHHHH
Confidence 34456667677788 99999999999987 7999999999999987763 1 12333444446788 4599999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1749 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
.|++++...+....|+.++.++.+.|++++|...|.++++..|....++..++..+... ++++|...|+++++..|.
T Consensus 531 ~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-- 608 (987)
T PRK09782 531 AWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-- 608 (987)
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--
Confidence 99999888777778899999999999999999999999998888888777777666666 999999999999999994
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..+|..+|.++.+.|++++|...|++++...|++..+|..++..+...|+.++|+.+|++++. ..|... .+|....
T Consensus 609 -~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~-~a~~nLA 684 (987)
T PRK09782 609 -ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDP-ALIRQLA 684 (987)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999 788888 5777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
......|+.+.|...|++|++.-.
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC
Confidence 788889999999999999987543
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.44 E-value=3.2e-11 Score=152.62 Aligned_cols=251 Identities=12% Similarity=0.066 Sum_probs=207.1
Q ss_pred cCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC
Q 000173 1666 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~ 1741 (1935)
++.+++...|++++...+.. ...|..++..+...|++++|+.+|+++++..+. ....|..++.+....|
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~la~~~~~~g-- 155 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDF-----AEGALQQLLEIYQQEK-- 155 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc-----hHHHHHHHHHHHHHhc--
Confidence 44667778888887643222 367889999999999999999999999975332 2357888888988999
Q ss_pred CHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
..+.|.+.|+++++..+.. ..|..++.++.+.+++++|...|+++++..+.....|+.++..+... ++++|.+
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4599999999999876542 35678888999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1815 VVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
+|++++...|... ..++..++..+...|++++|...|+++++..|+. .++..++.++.+.|++++|..+|++++. .
T Consensus 236 ~~~~~~~~~p~~~-~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~--~ 311 (389)
T PRK11788 236 ALERVEEQDPEYL-SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLLLALAQLLEEQEGPEAAQALLREQLR--R 311 (389)
T ss_pred HHHHHHHHChhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 9999999877542 4678889999999999999999999999999986 4558899999999999999999999998 5
Q ss_pred CchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLEYEKS---VGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~~E~~---~G~~e~a~~v~~rAle~ 1929 (1935)
.|... .|..++..... +|...++..++++.++.
T Consensus 312 ~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 312 HPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 66654 34455544332 56788888888877753
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.3e-11 Score=143.04 Aligned_cols=254 Identities=17% Similarity=0.150 Sum_probs=208.7
Q ss_pred CcHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH--H-HH-------HHHH------
Q 000173 1670 RTPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--N-IW-------VAYF------ 1732 (1935)
Q Consensus 1670 ~a~~~ferll~~-~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl--~-lW-------~ayl------ 1732 (1935)
++...+++++.. .|++..+=...+.....+.++|+|..+|+..++..|+|-+.-.+ | ++ +.|+
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~ 324 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN 324 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence 456677888865 89999888888888899999999999999999999987322111 1 11 1111
Q ss_pred -------------HHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1733 -------------NLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL 1798 (1935)
Q Consensus 1733 -------------~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~ 1798 (1935)
|.+...+ .-|.|...|+||++.+|.. .+|.-++.=|....+...|.+.|.+|++..|.....|+
T Consensus 325 idKyR~ETCCiIaNYYSlr~--eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRS--EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHH--hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHh
Confidence 1111222 3589999999999999986 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
.+++.|.-. .+.-|.-+|++|++..|.+ ..+|..+|+.|.+.++.++|...|.+++.....+.++...+++++.+.+
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 999999988 9999999999999999888 4899999999999999999999999999988888899999999999999
Q ss_pred CHHHHHHHHHHHHhcC-----CCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLS-----LPPKKMK-FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~-----~~pk~~k-~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+.++|-..|++.+... ..++-.+ .+| ...++.+.+++++|.....+++.+
T Consensus 481 d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 481 DLNEAAQYYEKYVEVSELEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHHHhhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999988721 2332221 234 567888899998888766666543
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=1.4e-12 Score=157.03 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=120.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++.+.+...|++++..+|.+...+.+++.+ ...+++++|..+++++.+..+. ...|..++.+....+ ..+.
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~------~~~l~~~l~~~~~~~--~~~~ 128 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD------PRYLLSALQLYYRLG--DYDE 128 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT---HHH
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccccccc------cchhhHHHHHHHHHh--HHHH
Confidence 457788889999999999999999999998 8999999999999998865431 246888888888899 5599
Q ss_pred HHHHHHHHHhcC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYC--D-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1746 a~~vferAl~~~--~-~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+..+++++.+.. + +..+|..++.++.+.|+.++|.+.|+++++..|++..++..++.++... +.+++++++.+..+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999988655 2 3489999999999999999999999999999999999999999999988 99999999999988
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|.+. .+|..+|..++..|++++|..+|++++...|++..++..|++.+...|..++|..++.+++.
T Consensus 209 ~~~~~~--~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 209 AAPDDP--DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp H-HTSC--CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HCcCHH--HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 887764 78999999999999999999999999999999999999999999999999999999999876
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.2e-11 Score=142.48 Aligned_cols=234 Identities=16% Similarity=0.161 Sum_probs=189.1
Q ss_pred hccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCH
Q 000173 1664 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1935)
Q Consensus 1664 ~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~ 1743 (1935)
+.++.-.|..+|+..+..+|....++|..+..|++..+-++-...|..|.+..|.. ..++.+...+...++ +.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-----~dvYyHRgQm~flL~--q~ 410 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-----PDVYYHRGQMRFLLQ--QY 410 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-----CchhHhHHHHHHHHH--HH
Confidence 45677888899999999999888889999999999999999999999999654432 347777777777777 44
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+.|..-|++|+.+.|.+ -.|+.++-...+.++++++...|+.+.++||..+.++..+++.+..+ ++++|.+.|..|+.
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 89999999999999887 67888888888888999999999999999999999999999999999 99999999999999
Q ss_pred hCCCCCh----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000173 1822 SLPRHKH----IKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1896 (1935)
Q Consensus 1822 ~~p~~~~----~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~p 1896 (1935)
.-|..+. +..+..-|.+.+ -.+++.+|..++++++..+|++...+..+++++.+.|++++|..+||.++. +..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~--lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ--LAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHH
Confidence 8877211 122222232222 238999999999999999999988999999999999999999999999887 543
Q ss_pred hhHHHHHHHHH
Q 000173 1897 KKMKFLFKKYL 1907 (1935)
Q Consensus 1897 k~~k~l~~~yl 1907 (1935)
..+ .+...|-
T Consensus 569 t~~-E~~~a~s 578 (606)
T KOG0547|consen 569 TES-EMVHAYS 578 (606)
T ss_pred hHH-HHHHHHH
Confidence 333 3444444
No 52
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.1e-13 Score=132.86 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.3
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.+++|++++|.|+.|++||+||+|++|=+||+|+|++.+.|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3678999999999999999999999999999999999999999999999999999999999997 9999999997754
No 53
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.38 E-value=1.1e-12 Score=122.82 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCc---cccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~---~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+++|++|.|+|++++++|+||+|+++++|+||++++||.++.+| .+.|++||.|+|+|+++|+++++|.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57999999999999999999999999999999999999997775 589999999999999999999999886
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=5e-11 Score=130.12 Aligned_cols=193 Identities=17% Similarity=0.107 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..+.+.+.--+.+.| +...|+.-+++||+..|+. ..|..++-+|.+.|..+.|.+.|+++++..|++.++..+|+.|
T Consensus 35 a~arlqLal~YL~~g--d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQG--DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 345555555567788 5699999999999999986 9999999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+..+ ++++|...|++|+..---..+...|.+.+..-++.|+.+.|+.+|+++|..+|++.......++++++.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999 999999999999975322344589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v 1922 (1935)
|..|++... ... -.+..+|.-| .+++..||...+.+.
T Consensus 193 r~~~~~~~~-~~~-~~A~sL~L~i-riak~~gd~~~a~~Y 229 (250)
T COG3063 193 RLYLERYQQ-RGG-AQAESLLLGI-RIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHh-ccc-ccHHHHHHHH-HHHHHhccHHHHHHH
Confidence 999999887 233 4555677765 689999998776544
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.38 E-value=4.9e-11 Score=156.87 Aligned_cols=240 Identities=10% Similarity=-0.066 Sum_probs=193.3
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSM---------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~---------~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.+|...|++++..+|++...|..++.++... +++++|...+++|++.-|.. ...|..+..+....|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-----~~a~~~lg~~~~~~g 352 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-----PQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcc
Confidence 4678899999999999999998888766532 34899999999999765532 357888888888889
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+ .++|...|++|++.+|.. ..|+.++.+|...|++++|...|++++...|.....++.++..++.. ++++|...++
T Consensus 353 ~--~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 E--YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred C--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 4 499999999999999986 89999999999999999999999999999998877766666666667 9999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc
Q 000173 1818 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSL-PP 1896 (1935)
Q Consensus 1818 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~-~p 1896 (1935)
+++...|... +..+..+|.++...|++++|+..|++++...|.....|...+..+...| ++|+..+++++.... .+
T Consensus 431 ~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 9998864332 5788999999999999999999999999999998888888888888887 478888887665111 11
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1897 KKMKFLFKKYLEYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1897 k~~k~l~~~yl~~E~~~G~~e~a~~v 1922 (1935)
.. ..| +..++.-+|+.+.+...
T Consensus 508 ~~--~~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 508 NN--PGL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred cC--chH--HHHHHHHHhhhHHHHHH
Confidence 11 122 44556667777766555
No 56
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.37 E-value=1.3e-12 Score=122.37 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=66.3
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccC---cccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN---IETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~---~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+++|++|.|+|+++++||+||.|.+ ++.|++|+++++|.++.+ +.+.|++||.|+++|+++|++++||.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~-~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSS-SIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCC-CCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 5799999999999999999999986 899999999999998766 4589999999999999999999999886
No 57
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.37 E-value=1.1e-12 Score=130.02 Aligned_cols=90 Identities=39% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhccc----------ccccccCCCCCcccCCCEEEEEEEEe
Q 000173 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE----------IEANEDNLLPTIFHVGQLVSCIVLQL 200 (1935)
Q Consensus 131 l~~G~~~lG~V~~i~~~~l~vslp~~l~G~v~~~~is~~~~~~~----------~~~~~~~~l~~~f~~Gq~v~~~V~~~ 200 (1935)
|++||.|+|+|.+|++.++.|+||+++.|+|+++++|+.|.... ..+.+...+.++|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 67999999999999999999999999999999999998752110 01122346789999999999999999
Q ss_pred ecCccccceeEEEEeechhhhh
Q 000173 201 DDDKKEIGKRKIWLSLRLSLLY 222 (1935)
Q Consensus 201 ~~~~~~~~~~~i~LS~~p~~vn 222 (1935)
++.++ + +++|.|||+|++||
T Consensus 81 d~~~~-~-~~~i~LSlr~~~vn 100 (100)
T cd05693 81 DKSKS-G-KKRIELSLEPELVN 100 (100)
T ss_pred cCCcC-C-CcEEEEEecHHHCC
Confidence 86532 1 56999999999998
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=5.2e-10 Score=142.00 Aligned_cols=269 Identities=12% Similarity=0.081 Sum_probs=204.5
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 000173 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1656 ~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le 1735 (1935)
+...-.....++...|.+...+.....|+....++-.+....+.|+++.|...++++.+..|... +.+...+..+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~----l~~~~~~a~l~ 163 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN----ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHH
Confidence 34444445566677777788888777787777777777888888888888888888886655322 34566667777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh-------------------------
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK------------------------- 1789 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~------------------------- 1789 (1935)
...+ +.+.|...++++++..|.. .++..++.+|.+.++++.|.+++.+..+.
T Consensus 164 l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 164 LAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 4588888888888887764 67777777777777777666666554432
Q ss_pred -------------cC----CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1790 -------------FK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1790 -------------~~----~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.| +++.+|+.++..+... ++++|.++++++++..|.+.....+......++..++.+.++..
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 22 3678889999988888 99999999999999999875322122222223445889999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1852 FEGILSEYPKRT--DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1852 fe~al~~~Pk~~--dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
++++++..|.+. .+...|+.++++.|++++|+..|+++......|+.. .+..+.....+.|+.+.|.+++++++..
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999 889999999999999999999999533333666655 3558889999999999999999999887
Q ss_pred HHh
Q 000173 1930 VES 1932 (1935)
Q Consensus 1930 v~~ 1932 (1935)
+.+
T Consensus 400 ~~~ 402 (409)
T TIGR00540 400 MLA 402 (409)
T ss_pred Hhc
Confidence 754
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.6e-10 Score=133.78 Aligned_cols=199 Identities=14% Similarity=0.071 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
...|..+...+...+ ..+.|.+.|+++++..|.. ..|..++.+|...+++++|.+.|++++...+.....|..++.+
T Consensus 31 ~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQG--DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 467888888888889 4599999999999998774 8899999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... ++++|.+.|++++...+.......|..+|..++..|++++|...|++++...|.+...|..++.++...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 9999 999999999999986543344578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..+|++++. ..|... ..|..........|+.+.++.+.+.+..
T Consensus 189 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQ--TYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999998 455555 3444667778888999999888777654
No 60
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.36 E-value=1.7e-12 Score=121.40 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=65.4
Q ss_pred cccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCCCCCCcCCCCcEEEEEEEEEcCCCcEEEEccCcc
Q 000173 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301 (1935)
Q Consensus 229 ~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~~~~v~ls~~~~ 301 (1935)
||.+|++++|+|+|||||||+||||+.+++||||+++++... .+++||.+.|.|++++..++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~~--~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFS--KLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCccc--ccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 688999999999999999999999999999999999986443 79999999999999999999999998643
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=2.1e-10 Score=132.84 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=177.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HH
Q 000173 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KV 1762 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v 1762 (1935)
.....|..++..+...+++++|...++++++..|.. ...|..+..++...| +.+.|.+.|+++++..|.. ..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-----YLAYLALALYYQQLG--ELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHH
Confidence 457889999999999999999999999999765532 357888888888899 4599999999999998764 88
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
|..++.+|...+++++|.+.|++++... +.....|..++..+... ++++|...|.+++...|.. ...|..+|.++
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 179 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR--PESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHH
Confidence 9999999999999999999999999753 45678899999999999 9999999999999999876 58899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|++++|..+|++++...|.+...|...+.++...|+.+.|+.+++.+..
T Consensus 180 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999998888888899999999999999999888765
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=5.4e-10 Score=141.53 Aligned_cols=151 Identities=16% Similarity=0.213 Sum_probs=124.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...+...+..+|.++..|..++..|.+.|+++++...+--|-...|. + ..+|..+..+..++|+ .+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d----~e~W~~ladls~~~~~--i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-D----YELWKRLADLSEQLGN--IN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-C----hHHHHHHHHHHHhccc--HH
Confidence 466888888999999999999999999999999999999999988888744443 3 2589999999999995 59
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-----VWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~-----vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+|+-.|.||++.+|.. ++.+..+.+|.+.|++..|.+.|.+++...|+..- .-..+++++... +-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999987 89999999999999999999999999988763222 222445555555 4577777777
Q ss_pred HHHHh
Q 000173 1818 RALLS 1822 (1935)
Q Consensus 1818 ralk~ 1822 (1935)
.++..
T Consensus 305 ~~~s~ 309 (895)
T KOG2076|consen 305 GALSK 309 (895)
T ss_pred HHHhh
Confidence 77663
No 63
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.33 E-value=3e-10 Score=139.64 Aligned_cols=249 Identities=17% Similarity=0.271 Sum_probs=173.2
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH-cCCCCHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YGNPPEEAVVKV 1749 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~-~g~~~~e~a~~v 1749 (1935)
.+..|...|...|.+...|.+||.++.+.|..+.+.++|+|++..+|.+ ..+|+.|+++... .+ +.+..+..
T Consensus 64 ~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-----vdlW~~Y~~f~~n~~~--d~~~lr~~ 136 (577)
T KOG1258|consen 64 LREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-----VDLWLSYLAFLKNNNG--DPETLRDL 136 (577)
T ss_pred HHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHHhccCC--CHHHHHHH
Confidence 4567888999999999999999999999999999999999999999963 4699999999754 45 56889999
Q ss_pred HHHHHhcCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHc------CHHHH------
Q 000173 1750 FQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV-WLRRVQRLLKQ------QQEGV------ 1812 (1935)
Q Consensus 1750 ferAl~~~~~~----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~v-w~~~~~~l~~~------~~e~A------ 1812 (1935)
|++|..++... .+|-+|+.+.....+......+|++.+......... +.+|.+++-.+ ..+++
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 99999998753 999999999988999999999999988654322222 12233322221 11111
Q ss_pred ----------------------------------HHHHHHHHH------------------------h-----CCC-CCh
Q 000173 1813 ----------------------------------QAVVQRALL------------------------S-----LPR-HKH 1828 (1935)
Q Consensus 1813 ----------------------------------~~ll~ralk------------------------~-----~p~-~~~ 1828 (1935)
...+.+.+. . .|- ...
T Consensus 217 ~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aq 296 (577)
T KOG1258|consen 217 VAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQ 296 (577)
T ss_pred HHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHH
Confidence 111111110 0 000 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
...|..|+.++...|+.++..-+|++++-.+..-..+|..|+.+....|+.+-|..++.++... ..++.. .+-..|..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~-~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTP-IIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCc-HHHHHHHH
Confidence 4667777777777777777777777777666666667777777777777777777777777661 222222 56666777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 000173 1909 YEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1909 ~E~~~G~~e~a~~v~~rAle 1928 (1935)
|++.+|++..|+.++++..+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHhhccHHHHHHHHHHHHh
Confidence 77777777777777766543
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.4e-10 Score=137.26 Aligned_cols=234 Identities=13% Similarity=0.093 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1764 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~ 1764 (1935)
.....-.+.|++-.|+.-.|...++.+++..+... ++++.+..++.... +.+..-+.|..|...+|.+ .+|+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-----~lyI~~a~~y~d~~--~~~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-----SLYIKRAAAYADEN--QSEKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-----hHHHHHHHHHhhhh--ccHHHHHHHHHHHhcCCCCCchhH
Confidence 34455556778889999999999999997655322 34555555555555 3388899999999999987 9999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1843 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1843 (1935)
+.++++.-.+++++|..-|++++...|.+.-.++.++-.++++ +++++...|+.+.+.+|.+ ++++..||+.+..++
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~--~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC--PEVYNLFAEILTDQQ 476 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--chHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999 9999999999999999999 599999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC------CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1844 VADRGRSMFEGILSEYPK------RTDL--WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1844 ~~e~Ar~ife~al~~~Pk------~~dl--w~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
+++.|...|..++...|. +... -...+.+-++ +++.+|.+|+++|++ +.|+-- ..+..+..++.+.|+
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e--~Dpkce-~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE--LDPKCE-QAYETLAQFELQRGK 552 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc--cCchHH-HHHHHHHHHHHHHhh
Confidence 999999999999999998 4332 2223333334 899999999999999 887654 678899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000173 1916 EERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1916 ~e~a~~v~~rAle~v~~ 1932 (1935)
.++|..+|+++..+..+
T Consensus 553 i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998875
No 65
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.33 E-value=6.4e-10 Score=152.77 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=135.2
Q ss_pred CCCcHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P-~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
...+...|+++..... -+...|..++..+.+.|++++|..+|+++.+. ....+ ...|..++..+.+.| ..+.|
T Consensus 488 vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD---~vTYnsLI~a~~k~G--~~deA 561 (1060)
T PLN03218 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPD---RVVFNALISACGQSG--AVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHCC--CHHHH
Confidence 3344445555544321 24556666666666666666666666655532 11001 235556666656666 34666
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1747 VKVFQRALQ----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1747 ~~vferAl~----~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|+++.. ..|....|..++..|.+.|++++|.++|+.|.+.. +.+...|..++..|.+. ++++|.++|.++.
T Consensus 562 ~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666653 12334556666666666666666666666665543 34555566666666655 6666666666665
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+..-.. ....|..+...+.+.|++++|..+|+.+.+.. +-+...|+.++..+.+.|+++.|..+|+.+......|..
T Consensus 642 ~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv- 719 (1060)
T PLN03218 642 KKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV- 719 (1060)
T ss_pred HcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-
Confidence 542111 12455555555556666666666666655442 233445666666666666666666666655543344432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
..|+..+....+.|+.++|..+|+++.
T Consensus 720 -vtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 720 -STMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245555555555566666555555543
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.8e-10 Score=149.76 Aligned_cols=236 Identities=12% Similarity=-0.027 Sum_probs=179.7
Q ss_pred cCCCCHHHHHHHHHHH--HH---cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH---HcCC----CCHHHHHH
Q 000173 1681 SSPNSSFVWIKYMAFM--LS---MADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN---EYGN----PPEEAVVK 1748 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~--l~---~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~---~~g~----~~~e~a~~ 1748 (1935)
..|.+.+.|..|+.-. +. ..++++|+..|++|++..|.. ...|..+..++. ..+. ...++|..
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-----IAPYCALAECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 3456666666665543 22 235789999999999766532 234443333322 1111 02588999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1749 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+++|++..|.. ..|..++.++...+++++|...|+++++..|++...|+.++..+... ++++|...|++|+...|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999875 89999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
. ..+..++..++..|++++|...|++++... |.....|..++.++...|+.++|+..|+++.. .+|... ..+..
T Consensus 406 ~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~-~~~~~ 480 (553)
T PRK12370 406 A--AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGL-IAVNL 480 (553)
T ss_pred h--hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhH-HHHHH
Confidence 3 445556666778899999999999999875 77888899999999999999999999999876 555433 23333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
........| +.+...+++.++
T Consensus 481 l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 481 LYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccH--HHHHHHHHHHHH
Confidence 333444444 355555555444
No 67
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.32 E-value=1.4e-11 Score=147.36 Aligned_cols=140 Identities=24% Similarity=0.293 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERT-EQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
.+|++||++..+.+ ..+.||.+|++|++.... ..+|.++|.++.+. ++.+.|..+|+++++.|+.+..+|+.|+.|
T Consensus 2 ~v~i~~m~~~~r~~--g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE--GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 37999999999998 679999999999976654 49999999998885 555559999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+... +.+.||.+|+|++..+|... .-.+|..|+++|.+.|+.+..+.+++++.+.+|....++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999 99999999999999998876 5689999999999999999999999999999999655544
No 68
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.32 E-value=6.6e-12 Score=117.41 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=65.9
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~ 834 (1935)
+++.|+.++|+|++|+++|+||+|. +|++||+|++++++. +.|++||.+.|+|+++|++++++.||+++..
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4788999999999999999999995 699999999999875 6799999999999999999999999998764
No 69
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.31 E-value=5.6e-12 Score=117.94 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.5
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc--ccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~--~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|++|.|+|+++.++|+||+|.+ +++|+||+++++++. .+++.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999987 799999999999874 788999999999999999999999999999986
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=1.5e-09 Score=137.03 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLA 1765 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~ 1765 (1935)
..++..+....+.|+++.|...+++|.+..|... +...+....+....| +.+.|.+.++++.+..|.. .++..
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----~~~~l~~a~l~l~~g--~~~~Al~~l~~~~~~~P~~~~al~l 192 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----LPVEITRVRIQLARN--ENHAARHGVDKLLEVAPRHPEVLRL 192 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3333334444788888888888888886544211 222233356667777 4488888888888888765 77777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH------------------------------------------hcCCCHHHHHHHHHH
Q 000173 1766 LLGLYERTEQNKLADELLYKMIK------------------------------------------KFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k------------------------------------------~~~~~~~vw~~~~~~ 1803 (1935)
++.+|.+.+++++|.+++.++.+ ..++++.++..|+..
T Consensus 193 l~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~ 272 (398)
T PRK10747 193 AEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH
Confidence 77888888888877766655542 334577788899999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... +.++|..+++++++.. .+ ..+...|+++ ..++++++.+.+++.++.+|++.+++..++.++.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~-~~--~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQ-YD--ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CC--HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999 9999999999999953 33 3677777765 348999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
+..|++++. ..|... .+..+...+.+.|+.+.+.++|++++..+.
T Consensus 348 ~~~le~al~--~~P~~~--~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 348 SLAFRAALK--QRPDAY--DYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHh--cCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 999999999 666654 466788888999999999999999998764
No 71
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.29 E-value=1.5e-12 Score=152.17 Aligned_cols=146 Identities=18% Similarity=0.260 Sum_probs=119.9
Q ss_pred cccCC-CCCEEEEEEEEEecCceEEEeC--CCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCCeEEEEEec
Q 000173 493 HSDVK-PGMVVKGKVIAVDSFGAIVQFP--GGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1935)
Q Consensus 493 ~~~l~-~G~~v~g~V~~v~~~G~~V~l~--~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~~i~ltlK~ 567 (1935)
.+.++ +|++|.|+|++|.++|+||+|. ++++||||.+++||.+..+|.+.+++|++|.|+||.+ ++++|.||+|+
T Consensus 11 ~~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~ 90 (319)
T PTZ00248 11 EQKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKR 90 (319)
T ss_pred hhhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeee
Confidence 34566 7999999999999999999996 6899999999999999999999999999999999999 57899999998
Q ss_pred ccccchhhHHhhhhhcCCCcEEEEEEEEEe-cceEEEE------EcCCeEEEecCcccCCCCCCCCCCCCC---CCCEEE
Q 000173 568 TLVKSKLAILSSYAEATDRLITHGWITKIE-KHGCFVR------FYNGVQGFAPRSELGLDPGCEPSSMYH---VGQVVK 637 (1935)
Q Consensus 568 ~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~-~~G~~V~------~~~~v~g~vp~se~~~~~~~~~~~~~~---vGq~v~ 637 (1935)
...++|......| +.|++++|+|..+. .+|++++ .....++|.|..+++...+.++.+.|. +|+.++
T Consensus 91 v~~~pw~~~~e~~---~~g~~v~~~V~~ia~~~g~~~eely~~i~~pl~~~~gh~y~af~~~v~~~~evl~~l~i~~ev~ 167 (319)
T PTZ00248 91 VSPEDIEACEEKF---SKSKKVHSIMRHIAQKHGMSVEELYTKIIWPLYKKYGHALDALKEALTNPDNVFEGLDIPEEVK 167 (319)
T ss_pred cccchHHHHHHhC---cCCCEEEEEEEEchhhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhccCCCCHHHH
Confidence 8877554444444 78999999999995 5999998 457788999999886544445555554 666555
Q ss_pred EEEE
Q 000173 638 CRIM 641 (1935)
Q Consensus 638 ~rVl 641 (1935)
..++
T Consensus 168 ~~l~ 171 (319)
T PTZ00248 168 ESLL 171 (319)
T ss_pred HHHH
Confidence 5444
No 72
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.29 E-value=1e-09 Score=149.74 Aligned_cols=260 Identities=10% Similarity=0.020 Sum_probs=200.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ------------------------------ 1714 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~------------------------------ 1714 (1935)
.++..+|...|++++..+|++..+|..|+..+...+..++|...+++++.
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHH
Confidence 34577888899999999999999999998888777777766655553332
Q ss_pred ----------------hccccchh--hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcC
Q 000173 1715 ----------------TINIREEN--EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTE 1774 (1935)
Q Consensus 1715 ----------------~i~~~ee~--Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~--~~~v~~~l~~i~~~~~ 1774 (1935)
..+...+. .....++..+......+ ..+.|...|+++++..+ +......++.+|...+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g--~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD--RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 11100000 00011222122224556 44889999999998863 2333333588999999
Q ss_pred ChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-------------ChHHHHHHHH
Q 000173 1775 QNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-------------KHIKFISQTA 1836 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~----~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-------------~~~~~~~~~a 1836 (1935)
++++|...|++++...+.. ...+..++..++++ ++++|..+|++++...|.. ....++...|
T Consensus 287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a 366 (765)
T PRK10049 287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS 366 (765)
T ss_pred CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence 9999999999998766544 45667777777788 9999999999999987631 2246788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
+++...|++++|..+|++++...|.+..+|..++.++...|++++|..+|++++. +.|... .++..........|+.
T Consensus 367 ~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~-~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 367 QVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNI-NLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCh-HHHHHHHHHHHHhCCH
Confidence 9999999999999999999999999999999999999999999999999999999 778887 4666666677889999
Q ss_pred HHHHHHHHHHHHH
Q 000173 1917 ERIEYVKQKAMEY 1929 (1935)
Q Consensus 1917 e~a~~v~~rAle~ 1929 (1935)
+.|+.+++++++.
T Consensus 444 ~~A~~~~~~ll~~ 456 (765)
T PRK10049 444 RQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.28 E-value=6.2e-10 Score=121.72 Aligned_cols=196 Identities=15% Similarity=0.101 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHL 1764 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~ 1764 (1935)
....+.++.-|++.|++..|+..+++||+.-|.. ...|..++-++...|. .+.|.+.|++|++..|.+ ++..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~Yq~~Ge--~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHYYQKLGE--NDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcCC--hhhHHHHHHHHHhcCCCccchhh
Confidence 4567788888999999999999999999876643 3689999999999994 599999999999999987 9999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~--~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
.|+-+++..|++++|...|++++.. |+...+.|.+.+-+.++. +++.|+.+|+|+|..+|... ......++.+++
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--~~~l~~a~~~~~ 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--PALLELARLHYK 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--hHHHHHHHHHHh
Confidence 9999999999999999999999975 478899999999999999 99999999999999999985 889999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.|++-.||..|++.....+-..+ ||.. +.++...||.+.+-.+=.+.-.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLG-IRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHH-HHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999988776554 6665 7889999999888775555444
No 74
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.28 E-value=1.1e-11 Score=115.91 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~--~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
|++|.|+|+++.++|+||.|+++++|++|+++++|.. .++|.+.|++||.|+|+|+++|+++++|.||++
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999874 889999999999999999999999999999986
No 75
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.27 E-value=1e-09 Score=131.54 Aligned_cols=265 Identities=18% Similarity=0.263 Sum_probs=200.1
Q ss_pred HHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 000173 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1656 ~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le 1735 (1935)
|.....+.-.....+.+..||+++...|.++.+|..|+..++...+++....+|.|||..+- .+++|..|+..-
T Consensus 23 w~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL------nlDLW~lYl~YV 96 (656)
T KOG1914|consen 23 WSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL------NLDLWKLYLSYV 96 (656)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh------hHhHHHHHHHHH
Confidence 44444444334588899999999999999999999999999999999999999999997543 268999999885
Q ss_pred HHcCCC---CHHHHHHHHHHHHhcCC----CHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHhc-CCCHHHHH
Q 000173 1736 NEYGNP---PEEAVVKVFQRALQYCD----PKKVHLALLGLY---------ERTEQNKLADELLYKMIKKF-KHSCKVWL 1798 (1935)
Q Consensus 1736 ~~~g~~---~~e~a~~vferAl~~~~----~~~v~~~l~~i~---------~~~~~~~~A~el~~~~~k~~-~~~~~vw~ 1798 (1935)
.+.... -.+...+.|+-|++.+- +..+|..|++++ +.+.+.+..++.|++|+-.. .+-.++|.
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 543320 12455667777777664 248899998864 45568899999999999654 45688999
Q ss_pred HHHHHHHHc--------------CHHHHHHHHHHHHHh----------CCC------CChHHHHHHHHHHHHHcCC----
Q 000173 1799 RRVQRLLKQ--------------QQEGVQAVVQRALLS----------LPR------HKHIKFISQTAILEFKNGV---- 1844 (1935)
Q Consensus 1799 ~~~~~l~~~--------------~~e~A~~ll~ralk~----------~p~------~~~~~~~~~~a~le~~~g~---- 1844 (1935)
.|..|.... .+..||++++..... .|. ...+++|.+|..+|..++-
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~ 256 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD 256 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999887642 577788777765432 111 1225789999999986652
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1845 ----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--------------VDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1845 ----~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~--------------~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
-.|..-.|+++|...+-..++|+.|.++....++ .++++++|||+++ .+. +..+.++..|
T Consensus 257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~-~l~-~~~~~Ly~~~ 334 (656)
T KOG1914|consen 257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIE-GLL-KENKLLYFAL 334 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHH-HHH-HHHHHHHHHH
Confidence 2455567899999999999999999999988777 7889999999998 233 3344788999
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHH
Q 000173 1907 LEYEKSVGE---EERIEYVKQKAME 1928 (1935)
Q Consensus 1907 l~~E~~~G~---~e~a~~v~~rAle 1928 (1935)
.++|+..-+ .+.+...+++++.
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHh
Confidence 999877655 6666677766653
No 76
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.27 E-value=8e-10 Score=150.85 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=175.5
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC---
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP--- 1742 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~--- 1742 (1935)
++.++|...+++++..+|++.. |..++..+...++.++|...++++++..|... .+|..|+.+....+...
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHH
Confidence 4477777778888777888877 88888777888888888888888886655322 35555555544333210
Q ss_pred -----------------------------------------HHHHHHHHHHHHhcC---CCH-----HHHHHHHHHHHHc
Q 000173 1743 -----------------------------------------EEAVVKVFQRALQYC---DPK-----KVHLALLGLYERT 1773 (1935)
Q Consensus 1743 -----------------------------------------~e~a~~vferAl~~~---~~~-----~v~~~l~~i~~~~ 1773 (1935)
.+.|.+.|+++++.. |.. ..++..+..+...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 022344444444331 111 1222212233456
Q ss_pred CChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHH
Q 000173 1774 EQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~---~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~ 1847 (1935)
+++++|...|+++++.. |.....| ++..++.. ++++|...|+++++..|... ....+..++..+.+.|++++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 78888888888888764 3334455 46777777 88888888888887766541 23566777777788889999
Q ss_pred HHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1848 GRSMFEGILSEYPK---------------RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1848 Ar~ife~al~~~Pk---------------~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
|..+|++++...|. ...++..++.++...|+.++|+.+|++++. ..|.+. .+|.........
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~-~l~~~lA~l~~~ 405 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQ-GLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHh
Confidence 99999988888763 134667788888889999999999999988 677776 688888888888
Q ss_pred cCCHHHHHHHHHHHHHH
Q 000173 1913 VGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1913 ~G~~e~a~~v~~rAle~ 1929 (1935)
.|+.+.|..++++|++.
T Consensus 406 ~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 406 RGWPRAAENELKKAEVL 422 (765)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999998874
No 77
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.1e-09 Score=129.26 Aligned_cols=215 Identities=15% Similarity=0.116 Sum_probs=179.6
Q ss_pred CCCcHHHHHHHHHcCCC---CHHHHHH-------------------------------HHHHHHHcCCHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPN---SSFVWIK-------------------------------YMAFMLSMADVEKARSIAERAL 1713 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~---s~~lW~~-------------------------------y~~~~l~~~e~dkAr~v~erAl 1713 (1935)
..++...||..+..+|. +-+++.+ .+.+|.-.++-++|...|+|||
T Consensus 278 fD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRAL 357 (559)
T KOG1155|consen 278 FDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRAL 357 (559)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHH
Confidence 77888899999988884 2222222 1222334567899999999999
Q ss_pred HhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 000173 1714 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1935)
Q Consensus 1714 ~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~ 1792 (1935)
+..| +- +++|.-+.--+..+.+. ..|.+.|+||+..+|.. +.|+.+++.|...+-+.-|.=.|++++..-|+
T Consensus 358 kLNp-~~----~~aWTLmGHEyvEmKNt--~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn 430 (559)
T KOG1155|consen 358 KLNP-KY----LSAWTLMGHEYVEMKNT--HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN 430 (559)
T ss_pred hcCc-ch----hHHHHHhhHHHHHhccc--HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 7544 33 68999888877888854 89999999999999986 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-------PKRTD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-------Pk~~d 1864 (1935)
...+|..++++|.+. +.++|.+.|.||+...... -.++..+|+++.+.++.++|...|++.+... |.-..
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte--~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~k 508 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE--GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIK 508 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 999999999999999 9999999999999886554 3799999999999999999999999999843 33233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..-++..+++.+++++|..+..+++.
T Consensus 509 a~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 509 ARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 333378999999999999998888877
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.26 E-value=2.2e-09 Score=147.58 Aligned_cols=251 Identities=9% Similarity=0.016 Sum_probs=170.0
Q ss_pred CCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~-P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
...+...|+++.... +.+...|..++..+.+.|+++.|+.+|+++.+.-...+ ...|..++..+.+.| ..+.|
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd----vvTynaLI~gy~k~G--~~eeA 526 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN----VHTFGALIDGCARAG--QVAKA 526 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCc--CHHHH
Confidence 445556666665433 23566777777777777777777777777765311111 356777777777777 44777
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1747 VKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1747 ~~vferAl~~--~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~---~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|+++.+. .|....|..++..|.+.+++++|.++|++|... ...+...|..++..|.+. ++++|.++|+++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777654 345577777777777777777777777777653 234556677777777777 7777777777777
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
+..... ....|..+...+.+.|++++|..+|+.+.+. .|+ ...|..+++.+.+.|++++|..+|+.+......|..
T Consensus 607 e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 607 EYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 654222 2467777777777777777777777777665 333 456777777777777777777777777775555543
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..|...+....+.|+.+.|..+|+++.+
T Consensus 685 --~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 685 --VSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3677777777777888888777776643
No 79
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.26 E-value=1.2e-11 Score=119.31 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.6
Q ss_pred CCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 752 ~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
++..++++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||+|+|+|+++|.+++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5667888999999999999999999999999999999999999999999999999999999999999999999999986
No 80
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.4e-10 Score=143.08 Aligned_cols=210 Identities=20% Similarity=0.190 Sum_probs=184.9
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH--H-HHcCCCCHHHHHHHHHH
Q 000173 1676 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL--E-NEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1676 erll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~l--e-~~~g~~~~e~a~~vfer 1752 (1935)
+.++..+|+++..|...+.++--+++.+.|.+.|+||++.-| +. =.+|--+ | .... ..|.|...|+.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~f-------aYayTLlGhE~~~~e--e~d~a~~~fr~ 480 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RF-------AYAYTLLGHESIATE--EFDKAMKSFRK 480 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-cc-------chhhhhcCChhhhhH--HHHhHHHHHHh
Confidence 356677899999999999999999999999999999996544 22 1122211 2 2223 34889999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
|+...+.. +.|+-++-+|.+.++++.|+-.|++|+.+.|.+..+-..++.++.+. +.++|..+|++|+...|++. -
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~--l 558 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP--L 558 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc--h
Confidence 99999875 99999999999999999999999999999999999999999999999 99999999999999999884 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+..|.+++..+++++|...||.+-+..|+...+....+..+.+.|..+.|..-|--|.. +.|+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 7788899999999999999999999999999999999999999999999999999999988 777655
No 81
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.22 E-value=2.7e-11 Score=113.17 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.2
Q ss_pred CCCCcEEEeEEEEEee-ceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1466 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~-~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
+++|++|.|+|+++.+ ||+||+|.+ +.+|++|+|+++++++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 899999976 89999999999999999999999999999999999984 99999986
No 82
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.21 E-value=4.3e-11 Score=112.36 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.3
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
..|+++.|+|+++.+||+||+|.+...+||||+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 58999999999999999999995434799999999999999999999999999999999999876 999986
No 83
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.21 E-value=3.4e-11 Score=112.32 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
|+.+.|+|.+++++|+||+|++++.||+|.+++++++..++.+.|++||.++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7889999999999999999999999999999999888889999999999999999999999999999985
No 84
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.2e-09 Score=128.19 Aligned_cols=253 Identities=19% Similarity=0.302 Sum_probs=181.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC---------
Q 000173 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP--------- 1741 (1935)
Q Consensus 1672 ~~~ferll~~~P~s~~lW~~y~~~~l~~~e-~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~--------- 1741 (1935)
...|..+|..+|+++++|+.-|.++..-+. ++.||.++.|+|+..|-.+ .+|..|..+|..+-+-
T Consensus 125 ~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr~~~g 199 (568)
T KOG2396|consen 125 KKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRREELG 199 (568)
T ss_pred HHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999987764 9999999999998666333 4898888887754210
Q ss_pred -C------------------------------------------------------------------------------
Q 000173 1742 -P------------------------------------------------------------------------------ 1742 (1935)
Q Consensus 1742 -~------------------------------------------------------------------------------ 1742 (1935)
+
T Consensus 200 ~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~ 279 (568)
T KOG2396|consen 200 LDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQ 279 (568)
T ss_pred cccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------------
Q 000173 1743 ------------------EEAVVKVFQRALQYCDPKKVHLALLGLY---------------------------------- 1770 (1935)
Q Consensus 1743 ------------------~e~a~~vferAl~~~~~~~v~~~l~~i~---------------------------------- 1770 (1935)
.+...++|+.|+++-++..+|..|+.+.
T Consensus 280 tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~ 359 (568)
T KOG2396|consen 280 TDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYK 359 (568)
T ss_pred hhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHH
Confidence 3445566666666666666776665522
Q ss_pred ------HHcCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHc--CHHHHHHH--------------------------
Q 000173 1771 ------ERTEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ--QQEGVQAV-------------------------- 1815 (1935)
Q Consensus 1771 ------~~~~~~~~A~el~~~~~-k~~~~~~~vw~~~~~~l~~~--~~e~A~~l-------------------------- 1815 (1935)
.......+|++.-.+++ ..|.++.++|..+.+.+.+. +++--...
T Consensus 360 ~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl 439 (568)
T KOG2396|consen 360 QYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSL 439 (568)
T ss_pred HHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccch
Confidence 11122334444444444 45668889999888777633 22222111
Q ss_pred -------HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHH
Q 000173 1816 -------VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLF 1886 (1935)
Q Consensus 1816 -------l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~--g~~e~ar~lf 1886 (1935)
+-.|+++....+...+-..|-.++++.|-+..||..|.++...-|-..+++...+++|..+ -+...+|.+|
T Consensus 440 ~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~y 519 (568)
T KOG2396|consen 440 QEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYY 519 (568)
T ss_pred hHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHH
Confidence 1222222222222345556666777788899999999999999999999999999999754 3478899999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1887 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1887 eral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
++|+. ..-.+. .+|..|+.+|..+|..+.+-.+|.||+.-++-
T Consensus 520 d~a~~--~fg~d~-~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~ 562 (568)
T KOG2396|consen 520 DRALR--EFGADS-DLWMDYMKEELPLGRPENCGQIYWRAMKTLQG 562 (568)
T ss_pred HHHHH--HhCCCh-HHHHHHHHhhccCCCcccccHHHHHHHHhhCh
Confidence 99998 333555 79999999999999999999999999988764
No 85
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.20 E-value=8.1e-11 Score=111.14 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.6
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
++.|+.+.|+|.++.++|+||++.+++.||+|.+++++.+..++...|++||+|+|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999986
No 86
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=6.9e-11 Score=112.60 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=71.9
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
++|+++.|+|+++.++|+||+|.+.++.|++|++++++++..++.+.|++||.|+|+|+++|++++++.||+|+++|
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999997557999999999999988888899999999999999999999999999999864
No 87
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.18 E-value=1.3e-09 Score=127.24 Aligned_cols=233 Identities=18% Similarity=0.298 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1686 SFVWIKYMAFMLSMA-----D--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~-----e--~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
-.-|++++.|+.+.+ + ..+---++++++...++.+ .+|..|.......+ +.+.|..+.+|+..++|
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~-----evw~dys~Y~~~is--d~q~al~tv~rg~~~sp 333 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAE-----EVWFDYSEYLIGIS--DKQKALKTVERGIEMSP 333 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHHhhcc--HHHHHHHHHHhcccCCC
Confidence 345999999987654 1 2334457899999888866 49999999988888 67999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----hcC--------------------------CCHHHHHHHHHHHHHc-
Q 000173 1759 PKKVHLALLGLYERTEQNKLADELLYKMIK----KFK--------------------------HSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~~~~~~~A~el~~~~~k----~~~--------------------------~~~~vw~~~~~~l~~~- 1807 (1935)
+ +++.|+..|+..++-+....+|+++.. +++ .-.-+|.-+..+..+.
T Consensus 334 s--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 334 S--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred c--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 8 667777788877777777777776542 111 1133677788888888
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
-.+.||.+|-++-+.--..+ .+|...|-+++ ..|++.-|-.+|+-.+..+|+..-....|..+++..++-+.||++|
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h--~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGH--HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred hHHHHHHHHHHHhccCCCCc--ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 99999999999977542222 56777777766 5689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1887 ERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1887 eral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
|.++. .+...+++.+|.+||++|...|+...|..+-+|..+.+
T Consensus 490 etsv~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 490 ETSVE-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHhHH-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 98887 44445778899999999999999988887777776654
No 88
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.18 E-value=8.2e-11 Score=110.73 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.7
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
+++|+++.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.|+++|+++|+++++|.||++
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999986 799999999999998888889999999999999999999999999975
No 89
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.18 E-value=6.4e-11 Score=110.34 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.4
Q ss_pred CcEEE-eEEEEE-eeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1469 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1469 G~~v~-G~V~~v-~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
|++|. |+|+++ .+||+||+|.+ +++||+|+|++++++++++.+.|++||.++++|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78899 999999 69999999987 79999999999999999899999999999999999999999999986
No 90
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=5.4e-09 Score=126.65 Aligned_cols=203 Identities=14% Similarity=0.097 Sum_probs=159.3
Q ss_pred HHHHHHHHcC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1673 DEFERLVRSS---P-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1673 ~~ferll~~~---P-~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
..|.++|... | +.+..|...+..+...|+.+.|+..|++|++..|.. ...|..+.......| +.+.|..
T Consensus 47 ~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A~~ 119 (296)
T PRK11189 47 ARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAAYE 119 (296)
T ss_pred HHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHHHH
Confidence 3445555432 2 457889999999999999999999999999765532 468999999999999 5599999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1749 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK--VWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~--vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
.|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.++. +|. .+.... ++++|...|.+++...+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL---YLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHccCCHHHHHHHHHHHHhhCC
Confidence 999999999875 89999999999999999999999999999988763 332 222334 89999999988776553
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGIL-------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al-------~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.. .|. ++...+..|+...+ ..|+.+. +..|...+.|+.++..+.+.|++++|+..|++|+.
T Consensus 197 ~~----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 197 KE----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred cc----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 343 45555566765444 3444444 44556667899999999999999999999999999
No 91
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.18 E-value=5.1e-09 Score=129.00 Aligned_cols=86 Identities=28% Similarity=0.478 Sum_probs=71.1
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~-~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
....+.+.|||.+..-|.|..+|+.|.+|+.. .++.+.-|..|+||+..+.. ++-.-.+|-.|+.+++...++ ..
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~--dF~S~~lWdkyie~en~qks~--k~ 169 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL--DFLSDPLWDKYIEFENGQKSW--KR 169 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc--chhccHHHHHHHHHHhccccH--HH
Confidence 35667889999999999999999999999964 45778899999999987765 444457999999999888844 77
Q ss_pred HHHHHHHHHhc
Q 000173 1746 VVKVFQRALQY 1756 (1935)
Q Consensus 1746 a~~vferAl~~ 1756 (1935)
.-.+|+|.+++
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 77888887764
No 92
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=1.4e-10 Score=109.23 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
+++|+++.|+|+++.++|+||+|+.+++|++|+++++|+|..++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999999999999999999999888999999999999999999999999999985
No 93
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=7.9e-11 Score=110.06 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEee-ceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~-~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
+++|+++.|+|+++.+ +|+||+|+++.+|++|+++++|.|+.+|.+.|++||.|+|+|++++. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 89999999999999999999999999999999999999999999984 99999986
No 94
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=7.5e-11 Score=110.02 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.8
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|+++.|+|+++.++|+||+|.+ ++.||+|+|+++++++.++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999976 699999999999998889999999999999999999999999999986
No 95
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.16 E-value=1.5e-10 Score=109.33 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
+++|+++.|+|.++.++|+||+++.+++|+||++++++.+..++...|++||.++++|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999986
No 96
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.15 E-value=1.1e-10 Score=112.70 Aligned_cols=78 Identities=33% Similarity=0.535 Sum_probs=74.0
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1370 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
+..+.++++|+++.|+|+++.++|+||+++++++|++|++++++++..++.+.|++||.|+++|+++|.+++++.||+
T Consensus 6 ~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 6 PTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred hhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 455678999999999999999999999999999999999999999999999999999999999999999999999986
No 97
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.15 E-value=1.1e-10 Score=108.49 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.8
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
|+++.|+|+++.++|+||+|.+ ++.|++|++++++.+..++.+.|++||.++++|+++|+++++|.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2.4e-08 Score=113.60 Aligned_cols=227 Identities=14% Similarity=0.187 Sum_probs=191.5
Q ss_pred HHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC
Q 000173 1660 EERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1660 e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
-..++++....|++.|-.++..+|...++.+.+...+-+-|+.|+|..+-+..+.+.+... .+|+..-.++..-+..-|
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~-~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF-EQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHHHHHhh
Confidence 3346677799999999999999999999999999999999999999999988887655533 345566667777778888
Q ss_pred CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHc-CHHHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQ-QQEGV 1812 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-----~~vw~~~~~~l~~~-~~e~A 1812 (1935)
-.+.|+++|......... ......++.||....+.++|.+.-++..+.-++. ...+..++.-++.. +.++|
T Consensus 122 --l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 --LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred --hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 459999999988764433 4889999999999999999999999999877543 34455666666666 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.++++|++.+|++ +.+-+..|.++...|+++.|...++++++.+|.-.. +...+...|...|+.+..++.+.+++.
T Consensus 200 ~~~l~kAlqa~~~c--vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKC--VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccc--eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998 488899999999999999999999999999998654 566777777888999999999999987
No 99
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.14 E-value=6.7e-09 Score=131.91 Aligned_cols=226 Identities=12% Similarity=0.102 Sum_probs=177.8
Q ss_pred HHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhh--HHHHHHHHHHHH
Q 000173 1659 AEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENE--KLNIWVAYFNLE 1735 (1935)
Q Consensus 1659 ~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~E--kl~lW~ayl~le 1735 (1935)
.+.....++..++...+++++..+|++..++..++..+++.++++.|.+.+++.++.-... .+.. ....|..++.-.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333335567788899999999999999999999999999999999999999999763221 1111 114454444321
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH--HHc-
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL--LKQ- 1807 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~-----~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l--~~~- 1807 (1935)
.. +...+.+.++.+..| ...++..++..+...|+++.|.+.++++++++|++....+.....+ +..
T Consensus 240 ~~------~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~ 313 (409)
T TIGR00540 240 MA------DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE 313 (409)
T ss_pred HH------hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC
Confidence 11 223456666666666 4599999999999999999999999999999998876432222222 223
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE--GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife--~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
+.+.+.+.++++++..|.+.++.+...+|+++++.|++++|+..|+ .+++..|+..+ +..++.++.+.|+.+.|+.+
T Consensus 314 ~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 314 DNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred ChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 7899999999999999998544788899999999999999999999 67888998877 44999999999999999999
Q ss_pred HHHHHh
Q 000173 1886 FERAIS 1891 (1935)
Q Consensus 1886 feral~ 1891 (1935)
|++++.
T Consensus 393 ~~~~l~ 398 (409)
T TIGR00540 393 RQDSLG 398 (409)
T ss_pred HHHHHH
Confidence 999876
No 100
>PRK08582 hypothetical protein; Provisional
Probab=99.13 E-value=1.3e-10 Score=122.15 Aligned_cols=75 Identities=28% Similarity=0.647 Sum_probs=70.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+++|++|.|+|++|++||+||.|++ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. .++|.||+|+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~-~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~ 76 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKA 76 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECC-CCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 37899999999999999999999986 79999999999999999999999999999999999996 59999999985
No 101
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.13 E-value=1.2e-10 Score=107.84 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|+|+++.++|+||+|.+++.||+|.+++++++..++.+.|++||.|+|+|+++|++++|+.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 68899999999999999999999999999999999999999999999999999999999999999886
No 102
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.12 E-value=1.8e-10 Score=107.08 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=66.2
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
|+.+.|+|+++.++|+||++.+++.||+|.+++++.+..++.+.|++||.++|+|+++|++++++.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 788999999999999999999999999999999999888899999999999999999999999999985
No 103
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.11 E-value=5.8e-09 Score=141.92 Aligned_cols=247 Identities=15% Similarity=0.137 Sum_probs=133.7
Q ss_pred CCCcHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~-P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
..+|...|+++.... .-+...|..++..+.+.+.+++|+++++.+++.--. .+ ..++.++++++.+.| ..+.|
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d---~~~~~~Li~~y~k~G--~~~~A 379 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-LD---IVANTALVDLYSKWG--RMEDA 379 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-CC---eeehHHHHHHHHHCC--CHHHH
Confidence 444444454443321 112334555555555555555555555555543111 00 234555566666666 34666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~-~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
.++|+++.+ +....|..++..|.+.|+.++|.++|++|.+. ...+...|..++..+... ..++|.++|+.+.+..+
T Consensus 380 ~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 380 RNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 666665532 23355666666666666666666666666543 234455555555555555 66666666666655433
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
-......|..+..++.+.|+.++|..+|++.- ...+..+|..++..+..+|+.+.|+.++++++. +.|.+. ..|.
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~-~~y~ 532 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL-NNYV 532 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC-cchH
Confidence 22223455666666666666666666665431 112334566666666666666666666666655 444444 3555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
..++.+.+.|..++|.++++...
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666666666666666666544
No 104
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11 E-value=2.3e-10 Score=106.59 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.4
Q ss_pred CCEEE-EEEEEE-ecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 762 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 762 G~~~~-G~V~~i-~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
|+++. |.|+++ .++|+||++.+|+.||+|.|++++++..++.+.|++||.|.|+|+++|+.++++.|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67788 999998 7999999999999999999999999999999999999999999999999999999996
No 105
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.3e-08 Score=129.92 Aligned_cols=254 Identities=13% Similarity=0.118 Sum_probs=163.9
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
..|...|...+..+|+|....+--|.+.+..+++-.|..+|.+|+...|...-.-++-+|..+ ..++ ..+.|..
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf----~kl~--~~~~a~~ 220 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCF----WKLG--MSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHH----Hhcc--chhhHHH
Confidence 467778888888888888888888888888888888888888888655432222223344333 3334 2366777
Q ss_pred HHHHHHhcCCCH-HHHH-------------------------------------HHHHHHHHcCChHHHHHHHHHHHHhc
Q 000173 1749 VFQRALQYCDPK-KVHL-------------------------------------ALLGLYERTEQNKLADELLYKMIKKF 1790 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~-------------------------------------~l~~i~~~~~~~~~A~el~~~~~k~~ 1790 (1935)
.|+||++++|.. ..+. .+++.|.-.++|..+..+++.+++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 777777776643 3333 33334455566666666666666543
Q ss_pred CC---CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1791 KH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1791 ~~---~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
.. ....++.++..+..+ ++++|..+|..+++..|.+ ++-.+...||.+...|+++.|...||+.+..+|++....
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 22 233366667777777 7777777777777776655 345566667777777777777777777777777777766
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000173 1867 SIYLDQEIRLG----DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933 (1935)
Q Consensus 1867 ~~ya~~e~k~g----~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~ 1933 (1935)
..++.++...+ ..++|..+...++. ..|... ..|.....+.+ ++|......+|.+|++.+++.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~--~~~~d~-~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLE--QTPVDS-EAWLELAQLLE-QTDPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHh--cccccH-HHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHc
Confidence 66666665543 45667777777766 445444 35555555443 556655688888888877764
No 106
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11 E-value=1.8e-10 Score=106.69 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=64.9
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|+++.|+|+++.++|+||+|.+ ++.|++|++++++.+..++.+.|++||.|+|+|+++|+++++|.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 7999999999999999999999999999999999999999999886
No 107
>PRK08582 hypothetical protein; Provisional
Probab=99.10 E-value=3.6e-10 Score=118.91 Aligned_cols=79 Identities=25% Similarity=0.437 Sum_probs=75.0
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~ 1455 (1935)
+++|++|.|+|++|+++|+||.|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+++....||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 789999999999999999999999999999999999999999999999999999999999996 5999999999887765
No 108
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=1.4e-08 Score=123.05 Aligned_cols=219 Identities=14% Similarity=0.061 Sum_probs=169.7
Q ss_pred CCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHH
Q 000173 1700 ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1778 (1935)
Q Consensus 1700 ~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~ 1778 (1935)
...+.+..-+.+++...+... ..+...|.....++...| ..+.|...|++|++..|.. ..|..++.+|...|++++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~-~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD-EERAQLHYERGVLYDSLG--LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc-HhhHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHH
Confidence 456778888888886544322 233568999999999999 5599999999999999975 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1857 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~ 1857 (1935)
|.+.|+++++..|+....|++++..+... ++++|.+.|+++++..|.+.. ...+..+....+++++|...|++++.
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~---~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY---RALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999 999999999999999998742 22333344567899999999988776
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1858 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1858 ~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~-----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
..+. +.|. +.......|+...+ ..|+.+... .+.|+.. ..|........+.|+.++|...|++|++.
T Consensus 194 ~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~-ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLC-ETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5433 3444 23444556666554 355555531 1233334 46777777888999999999999999763
No 109
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.09 E-value=3.8e-10 Score=107.18 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.2
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
++|+++.|+|.++.++|+||+|.+. ++.|++|+|++++.++.++.+.|++||.|+++|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999742 5999999999999999999999999999999999999999999999874
No 110
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.09 E-value=1.5e-10 Score=114.93 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-------------------CCccccCCCCcEEEEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-------------------ESPEKEFPIGKLVAGRVLSV 1436 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-------------------~~~~~~f~~G~~V~~kVl~v 1436 (1935)
|++|++|.|.|+++.++|+||.|+.+++|++|+++++|.|. .++.+.|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 57899999999999999999999999999999999999873 34778999999999999999
Q ss_pred eCC---CCEEEEEEecCcc
Q 000173 1437 EPL---SKRVEVTLKTSDS 1452 (1935)
Q Consensus 1437 d~~---~~ri~lSlk~~~~ 1452 (1935)
|++ +++|.||+|++..
T Consensus 81 d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 81 DKSKSGKKRIELSLEPELV 99 (100)
T ss_pred cCCcCCCcEEEEEecHHHC
Confidence 987 7899999998754
No 111
>PRK07252 hypothetical protein; Provisional
Probab=99.07 E-value=4.5e-10 Score=114.90 Aligned_cols=76 Identities=32% Similarity=0.620 Sum_probs=71.1
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
++|+++.|+|++|.++|+||+|.+ ++.|++|+|++++.++.++...|++||.|+|+|+++|++.++|.||+|....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 579999999999999999999976 6999999999999999888899999999999999999999999999988533
No 112
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.06 E-value=3.9e-10 Score=104.93 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=62.9
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCc-ccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~-~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|+++.|+|+++.+||+||+|.+ +++||+|+++++| ....++.+.|++||.|+|+|+++|.+++||+||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 7999999999996 566778889999999999999999999999875
No 113
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.06 E-value=2e-08 Score=117.56 Aligned_cols=241 Identities=16% Similarity=0.194 Sum_probs=125.7
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1679 VRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1679 l~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
+..+|++...|.++++++..++.+++.|++|++.....|+-+ .+|..||.-|....++ .+.+.+|-|+|...-
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~-----~aw~ly~s~ELA~~df--~svE~lf~rCL~k~l 107 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME-----HAWRLYMSGELARKDF--RSVESLFGRCLKKSL 107 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc-----HHHHHHhcchhhhhhH--HHHHHHHHHHHhhhc
Confidence 345566666666666666666666666666666665555422 2555555555555522 555555555554444
Q ss_pred CHHHHHHHHHHHHH----------------------------------------------------cCChHHHHHHHHHH
Q 000173 1759 PKKVHLALLGLYER----------------------------------------------------TEQNKLADELLYKM 1786 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~----------------------------------------------------~~~~~~A~el~~~~ 1786 (1935)
...+|..|+....+ ..+.+..++.|.+|
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44444444443322 23344445555555
Q ss_pred HHhc-CCCHHHHHHHHHHHHHc--------------CHHHHHHHHHHHHHhCCC----------------CChHHHHHHH
Q 000173 1787 IKKF-KHSCKVWLRRVQRLLKQ--------------QQEGVQAVVQRALLSLPR----------------HKHIKFISQT 1835 (1935)
Q Consensus 1787 ~k~~-~~~~~vw~~~~~~l~~~--------------~~e~A~~ll~ralk~~p~----------------~~~~~~~~~~ 1835 (1935)
+... .+-.++|..|-.|.... -+..||+.|+.....-.. +..-.-|++|
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 4332 23344555555554432 133344444333221000 0001235555
Q ss_pred HHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1836 AILEFKNGV-------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1836 a~le~~~g~-------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
..++...|- ..|-.-+|++++...|-...+|+.|....+..+|-++|....+|++. ..|. +-.+|..
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps----L~~~lse 341 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS----LTMFLSE 341 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc----hheeHHH
Confidence 555553331 23444556666666666666777777766667777777777777666 4442 4455566
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1909 YEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1909 ~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+++-..+.+.+..+|+++.+-+.+
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHHH
Confidence 666666777777777777665543
No 114
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.06 E-value=3.5e-10 Score=101.97 Aligned_cols=71 Identities=27% Similarity=0.394 Sum_probs=66.4
Q ss_pred CCeEEEEEEEEecCcEEEEEEecC-ceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEecc
Q 000173 670 GSLVSGVVDVVTPNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742 (1935)
Q Consensus 670 G~iv~g~V~~v~~~g~~V~l~~~~-~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~K 742 (1935)
|++|+|+|.++++++++|++ .+ +++|+||.+||||+.++++.+++++++||++..+|+++...+.+.||+|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l--~~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAI--LPEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEe--cCCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 78999999999999999999 55 9999999999999999999999999999999888888888888999986
No 115
>PRK07252 hypothetical protein; Provisional
Probab=99.06 E-value=6.3e-10 Score=113.83 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++|+++.|.|++|+++|+||++.+++.||+|.++++++++.++...|++||.|+|+|+++|++++++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999998754
No 116
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.06 E-value=9e-09 Score=140.05 Aligned_cols=243 Identities=12% Similarity=0.104 Sum_probs=200.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
+..+|...|+++ .+.+...|..++..+.+.|+.++|.++|++..+. +.+ + ...|..++......| ..+.
T Consensus 274 ~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p--d---~~t~~~ll~a~~~~g--~~~~ 343 (697)
T PLN03081 274 DIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI--D---QFTFSIMIRIFSRLA--LLEH 343 (697)
T ss_pred CHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcc--chHH
Confidence 355666667665 3457889999999999999999999999998753 222 1 246778888888889 4599
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYC--DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~--~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
|+++++.+++.. +...+|..++++|.+.|++++|.++|++|.+ .+...|..++..|.+. +.++|.++|+++...
T Consensus 344 a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred HHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999875 3348999999999999999999999999975 3677899999999999 999999999999876
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1900 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k 1900 (1935)
.-... ...|..+...+.+.|..++|+.+|+.+.+.++- +...|..+++++.+.|+.++|..+|+++- ..|..
T Consensus 421 g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~-- 494 (697)
T PLN03081 421 GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTV-- 494 (697)
T ss_pred CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCH--
Confidence 43322 477888888899999999999999999876543 34579999999999999999999998742 33433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1901 FLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1901 ~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..|...+.....+|+.+.++.+++++++
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 4799999999999999999999888754
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.3e-08 Score=123.28 Aligned_cols=230 Identities=17% Similarity=0.127 Sum_probs=189.0
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000173 1677 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1756 (1935)
Q Consensus 1677 rll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~ 1756 (1935)
+++...|+++..|+..+-||+..+.+.+||..|-+|...-+ .- ...|++|..-..-.++. |+|...|.+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~-~f----gpaWl~fghsfa~e~Eh--dQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP-TF----GPAWLAFGHSFAGEGEH--DQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cc----cHHHHHHhHHhhhcchH--HHHHHHHHHHHHh
Confidence 56677899999999999999999999999999999995433 22 24899999888888854 9999999999999
Q ss_pred CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC----C-ChH
Q 000173 1757 CDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H-KHI 1829 (1935)
Q Consensus 1757 ~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~----~-~~~ 1829 (1935)
.+.- .-.+-++--|.+.+.++.|...|..+..++|..+-+...++-..+.. .+.+|..+|+.++...+. . .-.
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 8864 44455555677899999999999999999999998888888888877 999999999999843322 1 113
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYL 1907 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~--~k~l~~~yl 1907 (1935)
++|.++|-.+.+.+.+++|...|+++|...|++.+.....+-.+...|+++.|...|.+++. +.|.+ +..+.+.++
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999989999999999999999999998 55554 335667776
Q ss_pred HH-HHHcCC
Q 000173 1908 EY-EKSVGE 1915 (1935)
Q Consensus 1908 ~~-E~~~G~ 1915 (1935)
+- +..+|.
T Consensus 534 e~~~~~~~~ 542 (611)
T KOG1173|consen 534 EDSECKSGV 542 (611)
T ss_pred Hhhhhhccc
Confidence 54 455554
No 118
>PRK05807 hypothetical protein; Provisional
Probab=99.04 E-value=6.7e-10 Score=116.56 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+++|++|.|+|+.+.+||+||.| + +..||+|+|++++.++.++...|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 478999999999999999999999 4 68999999999999999999999999999999999997 79999999984
No 119
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.5e-08 Score=129.37 Aligned_cols=246 Identities=13% Similarity=0.113 Sum_probs=132.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000173 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1935)
Q Consensus 1674 ~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferA 1753 (1935)
...+.+...|.++.+|+.++..+++.. .-.+..+|.+|+...-...-.-...+....+.++...|+ .+.|...|.+|
T Consensus 402 ~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~--~~~A~~~f~~A 478 (1018)
T KOG2002|consen 402 VLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN--IEKALEHFKSA 478 (1018)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC--hHHHHHHHHHH
Confidence 334555555677777777666554433 333355555555321111000001234455666666663 36677777776
Q ss_pred HhcCC----CH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1754 LQYCD----PK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1754 l~~~~----~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+.... .. ++-+.++.+++..++++.|.++|...++.+|...+.+++++.+.... +..+|...+..++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 65521 11 24566666666666666666777666666666666666666444444 55666666666665
Q ss_pred hCCCCChHHHHHHHHHHHHHcCC------------------------------------------------HHHHHHHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGV------------------------------------------------ADRGRSMFE 1853 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~------------------------------------------------~e~Ar~ife 1853 (1935)
.+..+ +.+|..+|.+++.... +++|.++|.
T Consensus 559 ~d~~n--p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 559 IDSSN--PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred cccCC--cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 54333 3555555554443222 566777777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1854 GILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1854 ~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
++|+.+|+|+..-+-.+-.+...|.+..|+.+|.++.+ ...+.. ..|.........+|.+-.|.++|+.++
T Consensus 637 kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE--a~~~~~-dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 637 KVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE--ATSDFE-DVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH--HHhhCC-ceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777755555555555555666666666655554 111111 344444444444555555555555554
No 120
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.5e-08 Score=119.70 Aligned_cols=250 Identities=11% Similarity=0.058 Sum_probs=211.5
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..+.-+.++.++..+|-+.....-+++.+..+++..+-..+..+.++..|... --|++..-++...+.+ .+|
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a-----~sW~aVg~YYl~i~k~--seA 331 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA-----LSWFAVGCYYLMIGKY--SEA 331 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC-----cchhhHHHHHHHhcCc--HHH
Confidence 344555667778888888777777777888899998888888888888877544 5799999999999965 999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
|..|-+|....+.. ..|+.++..|.-.+..+.|...|.+|.+.++.+..-.+-++.=+.+. +++.|.+.|..|+..+|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 99999999999987 99999999999999999999999999999987766666666666667 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSE----YPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~----~Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
.+ +-+....|-+.|..+.+.+|..+|+.++.. .+.. ..+|+.++..+.+.+.++.|...|+++|. +.|+
T Consensus 412 ~D--plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k 487 (611)
T KOG1173|consen 412 SD--PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPK 487 (611)
T ss_pred Cc--chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCC
Confidence 98 467888888899999999999999999943 2222 23799999999999999999999999999 8887
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.+ ..+....-.....|+.+.|...|.+|+-
T Consensus 488 ~~-~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 488 DA-STHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ch-hHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 76 4555555566778999999999999874
No 121
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.02 E-value=9.2e-10 Score=104.83 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
++|+.+.|+|++++++|+||++.+ ++.||+|.+++++++..++.+.|++||.|+|+|+++|++++++.||+|++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 368999999999999999999985 89999999999998888899999999999999999999999999999875
No 122
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.2e-08 Score=115.36 Aligned_cols=228 Identities=13% Similarity=0.083 Sum_probs=196.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLG 1768 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~ 1768 (1935)
.+++.+|+++|-+.+|..-++.+|+..+. ...+.-+...+.+.. +.+.|..+|...+...|.+ ++...++.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~------~dTfllLskvY~rid--QP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH------PDTFLLLSKVYQRID--QPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc------hhHHHHHHHHHHHhc--cHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 45677889999999999999999987664 235666677788888 4599999999999999987 88888999
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1847 (1935)
+++..+++++|.++|+..++..+.+.+..-..+.-++.. +++-|..+|.|.|+.--.+ ++++.+.|...+-.+++|.
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhh
Confidence 999999999999999999999988888777777777777 9999999999999986555 6999999999999999999
Q ss_pred HHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1848 GRSMFEGILSEY--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924 (1935)
Q Consensus 1848 Ar~ife~al~~~--P-k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~ 1924 (1935)
+..-|+|++... | ...|+|+.+.......||..-|...|.-++. ..+.+. .-++...-++.+.|+++.|+.++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~-ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHG-EALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchH-HHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999999764 3 3578999999999999999999999999998 666666 578888889999999999999998
Q ss_pred HHHHHH
Q 000173 1925 KAMEYV 1930 (1935)
Q Consensus 1925 rAle~v 1930 (1935)
-|....
T Consensus 454 ~A~s~~ 459 (478)
T KOG1129|consen 454 AAKSVM 459 (478)
T ss_pred HhhhhC
Confidence 886543
No 123
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.02 E-value=9.1e-10 Score=103.68 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=67.8
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
|++|.|+|+++.++|+||+|.+ +++|+||+++++++++.++.+.|++||.++++|+++|++++++.||+|.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCC-CCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 7899999999999999999986 7999999999999999899999999999999999999999999999986
No 124
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.01 E-value=1.3e-09 Score=103.58 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC--CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLG--RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~--gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
+.|+.+.|.|.++.++|+||++.+ ++.||+|.+++++.+..++.+.|++||.|+|+|+++|.+++++.||+++
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 479999999999999999999974 6999999999999999999999999999999999999999999999873
No 125
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.01 E-value=7.5e-10 Score=103.01 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc-ccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~-~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|.|.+++++|+||++.+++.||+|.++++| ....++.+.|++||+|+|+|+++|.+++|+.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 67899999999999999999999999999999996 567788889999999999999999999999875
No 126
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.00 E-value=1.2e-09 Score=102.57 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=63.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~-~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+++|+++.|+|+++.+||+||+|.+ +++||+|++++.+. +..+..+.|++||.|+++|+++|.++++|.||
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 69999999999864 44466788999999999999999999999875
No 127
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.00 E-value=1.1e-09 Score=100.35 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.7
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|++|.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.|+|+|+.+|+++++|.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 79999999999876544 778999999999999999999999886
No 128
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.97 E-value=7.3e-08 Score=121.88 Aligned_cols=227 Identities=12% Similarity=0.121 Sum_probs=180.3
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hhhHH--HHHHHHHH
Q 000173 1657 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKL--NIWVAYFN 1733 (1935)
Q Consensus 1657 ~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e~Ekl--~lW~ayl~ 1733 (1935)
...+.....++.+++...+++++..+|++..+....+..+++.+++++|.+++.+..+...... +..++ ..|..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3344445566788899999999999999999999999999999999999999999997655422 12222 24444443
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1811 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~-~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~ 1811 (1935)
...... ..+.+.++++..-...+ ...++..++..+...|+.++|...++++++ .+.+..+...|+.. .. ++++
T Consensus 238 ~~~~~~--~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 238 QAMADQ--GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHhc--CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHH
Confidence 322222 23444444444433333 248999999999999999999999999998 45677777777764 34 8999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.+.+++.++..|.+ +.++..+|+++++.+++++|+..|++++...|+..+ +..+++++.+.|+.+.|..+|++++.
T Consensus 313 al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 313 LEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999988 589999999999999999999999999999999755 55689999999999999999999987
No 129
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.97 E-value=1.7e-09 Score=99.13 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|.|.+++++|+||++.+++.||+|.++++..... .+.|++||.|.|+|+++|++++|+.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 788999999999999999999999999999999865543 678999999999999999999999886
No 130
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.97 E-value=2.6e-09 Score=100.57 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.0
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
|+++.|+|+++.++|+||+++.+++|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 131
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.96 E-value=2e-09 Score=100.42 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=66.4
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|++|.|+|.++.++|+||.|.. +..|++|.+|+++.+..++.+.|++||.++|+|+++|+++++|.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGY-KSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999964 799999999999999999999999999999999999988999999975
No 132
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=98.96 E-value=2.3e-09 Score=100.65 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=64.6
Q ss_pred CCCCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
..|+.+.|.|+++++||+||++.+ +..||+|.+++++.++.++.+.|++||+|+|+|+++|.++ |+.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 369999999999999999999955 3799999999999999999999999999999999999976 999986
No 133
>PLN03077 Protein ECB2; Provisional
Probab=98.96 E-value=1e-07 Score=133.06 Aligned_cols=247 Identities=12% Similarity=0.058 Sum_probs=158.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+|...|++++...+-+...|...+..+.+.|.++.+++++..+++.--. .+ ..+..++++++.+.| ..+.|.
T Consensus 471 ~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~-~~---~~~~naLi~~y~k~G--~~~~A~ 544 (857)
T PLN03077 471 CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG-FD---GFLPNALLDLYVRCG--RMNYAW 544 (857)
T ss_pred HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC-cc---ceechHHHHHHHHcC--CHHHHH
Confidence 334444555554433334445555555555555555555555555542111 10 124456667777777 557777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|++. .+....|..++..|.+.|+.++|.++|++|...- ..+...|..++..+.+. .+++|.++|+.+....+-
T Consensus 545 ~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 777775 4455778888888888888888888888777542 34455566666666666 778888888877755444
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
......|..+..++.+.|++++|..+|+.. ...| +..+|..++..+..+++.+.++...+++++ +.|.+. ..|..
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~-~~y~l 696 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV-GYYIL 696 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc-chHHH
Confidence 444567777777777888888888777764 2223 356788777777777888888777777777 666665 46666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+...+...|+.++|.++.+...+
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHH
Confidence 66677777887777777766543
No 134
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.95 E-value=2.4e-09 Score=100.52 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.3
Q ss_pred cCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcc-cccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~-~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
+++|+.+.|.|++|+++|+||++.+++.||+|.+++++. ...++...|++||.|+|+|+++|.+++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 358999999999999999999999999999999999864 44577788999999999999999999999874
No 135
>PHA02945 interferon resistance protein; Provisional
Probab=98.94 E-value=2.5e-09 Score=98.98 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeecccc--CcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sel--s~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..+|+++-|+|+. .+||+||.|+.- +..||+|+||+ +..++++ .+.+ +||.|.|+|+++|+.++.|.||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 4789999999999 999999999864 89999999955 9999999 8888 99999999999999999999999973
No 136
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.94 E-value=3e-09 Score=101.74 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.6
Q ss_pred CcEEEeEEEEEeeceEEEEEecC--ceeEEeeccccCcccc-cCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~--~v~Gl~h~sels~~~~-~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
|+++.|+|+++.+||+||+|.+. +++||+|++++++.+. .++.+.|++||.|+++|+++| +++|.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999853 6999999999999886 888899999999999999999 89999999874
No 137
>PRK08059 general stress protein 13; Validated
Probab=98.94 E-value=2.5e-09 Score=110.87 Aligned_cols=78 Identities=36% Similarity=0.748 Sum_probs=73.2
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+.++++|++|.|+|.++.++|+||.|.+ ++.|++|++++++.++.++...|++||.|+|+|+++|.++++|.||+|..
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~-~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~ 79 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDE-ETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRAT 79 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECC-CCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEc
Confidence 3568999999999999999999999986 79999999999999988888899999999999999999999999999986
No 138
>PLN03077 Protein ECB2; Provisional
Probab=98.94 E-value=6.1e-08 Score=135.17 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=44.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
..|.+.|+.++|+.+|+.. +.+...|+.++..+.++|+.++|..+|++.......|... .|...+....+.|..
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~v 605 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV--TFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc--cHHHHHHHHhhcChH
Confidence 4444555555555555553 3344455555555555565555666665555544444433 344444444445555
Q ss_pred HHHHHHHHHHH
Q 000173 1917 ERIEYVKQKAM 1927 (1935)
Q Consensus 1917 e~a~~v~~rAl 1927 (1935)
+++..+|+.+.
T Consensus 606 ~ea~~~f~~M~ 616 (857)
T PLN03077 606 TQGLEYFHSME 616 (857)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 139
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=1.5e-07 Score=118.66 Aligned_cols=248 Identities=17% Similarity=0.198 Sum_probs=183.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH---HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL---NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1759 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl---~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~ 1759 (1935)
|.-...-..++..|...+++++|..++++|++.+--+...+.+ ..-..+..++...+++ .+|..+|++|++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~--~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY--DEAVNLYEEALTIREE 273 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHHHH
Confidence 4444555567888899999999999999999863211111111 1222355667778854 9999999999987531
Q ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-----CCHH---HHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1760 ---------KKVHLALLGLYERTEQNKLADELLYKMIKKFK-----HSCK---VWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1760 ---------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~-----~~~~---vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
-.++..|+.+|...|++.+|...+++++.++. ..+. .....+..+... ++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 18899999999999999999999999998873 2233 344455555555 99999999999988
Q ss_pred hC---CCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC-C----HHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1822 SL---PRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PK-R----TDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1822 ~~---p~~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~----Pk-~----~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
.. |...| ..++.++|.+++..|++.+|+.+|++|++.. .+ + ..+|.- +-.+.+.+.+..|-.+|
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l-a~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL-AEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH-HHHHHHhcccchHHHHH
Confidence 65 33333 4789999999999999999999999999875 22 2 235554 44557888899899999
Q ss_pred HHHHhc-----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1887 ERAISL-----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1887 eral~~-----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+++... ...|.-. ..+......+...|+++.|..+-++++.+-+..+
T Consensus 433 ~~~~~i~~~~g~~~~~~~-~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVT-YTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHHHHHHHhCCCCCchH-HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 988751 1233333 6688888889999999999999999998876544
No 140
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.93 E-value=3.7e-09 Score=98.62 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
|++|.|+|.++.++|+||+|+.+.+|++|.+++++.+..+|.+.|++||.++++|++++++++++.||++
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999998999999999999999999999999999999999999988999999985
No 141
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.92 E-value=3.6e-09 Score=98.28 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.1
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
|+++.|+|+++.++|+||.|.+ ++.|++|++++++.++.++.+.|++||.|+++|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999975 79999999999999988888999999999999999998 899999986
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=6.9e-08 Score=121.63 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=179.6
Q ss_pred HHHHHHHHHhcc-CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhccccchhhHHH
Q 000173 1655 EIRAAEERLLEK-DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADVEKARSIAERALQTINIREENEKLN 1726 (1935)
Q Consensus 1655 ~~~~~e~~~~~~-~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~-------~~e~dkAr~v~erAl~~i~~~ee~Ekl~ 1726 (1935)
+|..++.-+-.. +.+.....|+++|. +-++..+|..|+.|... .+++++-|.+|+|||+...++-. +-..
T Consensus 152 ~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~ 229 (881)
T KOG0128|consen 152 EWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAA 229 (881)
T ss_pred HHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHH
Confidence 466666655433 36777778888864 56899999999999863 35789999999999998776533 4567
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc-----------------------------------------------CC
Q 000173 1727 IWVAYFNLENEYGNP-PEEAVVKVFQRALQY-----------------------------------------------CD 1758 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~-~~e~a~~vferAl~~-----------------------------------------------~~ 1758 (1935)
+|..|..++..+-.. ..++...+|.+.+.. .+
T Consensus 230 ~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~ 309 (881)
T KOG0128|consen 230 IWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEP 309 (881)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999988887654210 012334444444432 22
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCC---------
Q 000173 1759 P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRH--------- 1826 (1935)
Q Consensus 1759 ~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~--------- 1826 (1935)
. ...|+.|++....+|........+++++..+......|+.|+.++-.. -.+.+...+.||+.++|..
T Consensus 310 ~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rall 389 (881)
T KOG0128|consen 310 IKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALL 389 (881)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHH
Confidence 2 267888888889999999999999999988887788888887755443 2223333333333333321
Q ss_pred ---------------------------------------------------------------------ChHHHHHHHHH
Q 000173 1827 ---------------------------------------------------------------------KHIKFISQTAI 1837 (1935)
Q Consensus 1827 ---------------------------------------------------------------------~~~~~~~~~a~ 1837 (1935)
....+...+|+
T Consensus 390 AleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~ 469 (881)
T KOG0128|consen 390 ALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQ 469 (881)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 11244455555
Q ss_pred HHH-HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1838 LEF-KNGVADRGRSMFEGILSEYPKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1838 le~-~~g~~e~Ar~ife~al~~~Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
+|. ..++++.||.+....+..---+.. .|..|++++..+|+...+|.++.+|......|..+..+...|..||..+|+
T Consensus 470 ~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gt 549 (881)
T KOG0128|consen 470 VEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGT 549 (881)
T ss_pred HHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhcccc
Confidence 554 234566666666665554444444 788888888888888888888888887666666566788888888888888
Q ss_pred HHHHHHHHHHH
Q 000173 1916 EERIEYVKQKA 1926 (1935)
Q Consensus 1916 ~e~a~~v~~rA 1926 (1935)
.+....+-++-
T Consensus 550 l~~~~~~~~~~ 560 (881)
T KOG0128|consen 550 LESFDLCPEKV 560 (881)
T ss_pred HHHHhhhHHhh
Confidence 77655444433
No 143
>PRK05807 hypothetical protein; Provisional
Probab=98.90 E-value=6.1e-09 Score=109.35 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
+++|++|.|.|+.++++|+||.| .+..|+||++++++.|+.++.+.|++||.|+++|+++|. +++|.||+|...
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 67899999999999999999999 578999999999999999999999999999999999997 799999999865
No 144
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=6.4e-08 Score=109.54 Aligned_cols=196 Identities=17% Similarity=0.135 Sum_probs=179.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1729 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1729 ~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.++...+.++|.+ ..|+..|+.+|+..+.-..|.-+..+|.+..+.+.|..+|...+..||.+....+..++.+...
T Consensus 227 ~Q~gkCylrLgm~--r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMP--RRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcCh--hhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 3677888999955 8999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
+.++|.++|+++++..|.+ ++.+...|.-+|--+++|.|...|.|+|+.--.+..++...+-..+-.+.+|-+..-|+
T Consensus 305 ~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999999999877 68888888889989999999999999999998999999999998899999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
||++..-.|..+-++|...-...-..||...|.++|+-|+.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 99996555677668999988877888999999999988863
No 145
>PRK08059 general stress protein 13; Validated
Probab=98.89 E-value=7.7e-09 Score=107.29 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.3
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|.|.++.++|+||.++.+++|++|++++++.++.++.+.|++||.|.|+|+++|.+++++.+|++....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999999998999999999999999999999999999998765
Q ss_pred c
Q 000173 1454 T 1454 (1935)
Q Consensus 1454 ~ 1454 (1935)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
No 146
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.88 E-value=4.6e-09 Score=97.31 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.0
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
|+++.|+|+++.++|+||+|.+ +..|+||.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999976 7999999999999988888889999999999999999999999876
No 147
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.86 E-value=9e-09 Score=95.06 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.6
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
|+.+.|.|.++.++|+||+| +|+.||+|.+++++.+..++.. .+||.+.|+|+++|.+++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 67899999999999999999 8899999999999887777665 4999999999999999999999975
No 148
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.85 E-value=8.4e-09 Score=95.80 Aligned_cols=69 Identities=30% Similarity=0.518 Sum_probs=65.7
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
|+.+.|.|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.|+|+|+++|+ ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 678999999999999999999999999999999998888999999999999999999998 899999985
No 149
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=3.6e-08 Score=120.42 Aligned_cols=217 Identities=14% Similarity=0.073 Sum_probs=137.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
+++.++|.-.||.++..+|.+..+|..+...+.++..-..|...++||++.-|.+- .+.++++--+...| -..
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl-----eaLmaLAVSytNeg--~q~ 370 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL-----EALMALAVSYTNEG--LQN 370 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH-----HHHHHHHHHHhhhh--hHH
Confidence 46699999999999999999999999999999999999999999999997655322 23333333333334 224
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH---------HHcCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHc-CHHHH
Q 000173 1745 AVVKVFQRALQYCDPKKVHLALLGLY---------ERTEQNKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGV 1812 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~~v~~~l~~i~---------~~~~~~~~A~el~~~~~k~~~--~~~~vw~~~~~~l~~~-~~e~A 1812 (1935)
+|...+...+...|.. .|..-+..- .....+....++|-.|....+ ..+++...++-.|... ++++|
T Consensus 371 ~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 5566666665544321 111111000 011123344455555554444 5566666666655555 66666
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...|+-||+..|.+. .+|-++|..+---.+.++|...|.+||+..|....+|+.++--++.+|.+.+|-..|-+||.
T Consensus 450 iDcf~~AL~v~Pnd~--~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDY--LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchH--HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666666666666653 66666666665555666666666666666666666666666666666666666666666665
No 150
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.84 E-value=5.6e-07 Score=114.86 Aligned_cols=234 Identities=15% Similarity=0.100 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHH
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLAL 1766 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l 1766 (1935)
..+.-|.+....|+++.|..++..+++..|-. ...|..+...+.+.| +.+++...+--|...+|.. ..|..+
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~IyEqrG--d~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEIYEQRG--DIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHHHHHcc--cHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 34455666667799999999999999876643 247999999999999 6799999999999888875 999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHc
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKN 1842 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~---~~~~~~~~a~le~~~ 1842 (1935)
+.+..+.+.+..|+-+|.++++..|.+....+.++..+.+. +...|..-|.++++.+|... -......+++.+..+
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 99999999999999999321 124556667777777
Q ss_pred CCHHHHHHHHHHHHHh----------------------------------------------------------------
Q 000173 1843 GVADRGRSMFEGILSE---------------------------------------------------------------- 1858 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~---------------------------------------------------------------- 1858 (1935)
++-++|.+.++.++..
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 7778888888777220
Q ss_pred ---------------------------------C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000173 1859 ---------------------------------Y--P-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1902 (1935)
Q Consensus 1859 ---------------------------------~--P-k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l 1902 (1935)
+ | .+.+++...++.++..|.+..|..+|-.++. .++-+--++
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~--~~~~~~~~v 451 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN--REGYQNAFV 451 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc--Cccccchhh
Confidence 0 1 1244666677777778999999999999988 333332389
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1903 FKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1903 ~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
|.+....+...|..+.|...|++++...
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998753
No 151
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.83 E-value=8.1e-09 Score=95.63 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.5
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
|+.+.|+|++++++|+||++.+++.||+|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999999888888889999999999999999999999876
No 152
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.82 E-value=1.3e-08 Score=94.07 Aligned_cols=67 Identities=30% Similarity=0.370 Sum_probs=59.9
Q ss_pred CcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEe
Q 000173 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1935)
Q Consensus 586 G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k 655 (1935)
|+++.|+|+++.++|++|+| +++.||+|.+++++....++.+ .+||.++|+|+++|++++++.||.+
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78999999999999999999 8999999999998765555544 4899999999999999999999974
No 153
>PLN02789 farnesyltranstransferase
Probab=98.81 E-value=8.8e-07 Score=107.41 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=184.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
+..++|...++++|..+|++..+|......+..++ .+++|...++++++..|.. ..+|.....+...++....+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-----yqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-----YQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-----hHHhHHHHHHHHHcCchhhH
Confidence 44788889999999999999999999988888888 6899999999999765532 45898777666677731126
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--------QQEGVQAV 1815 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--------~~e~A~~l 1815 (1935)
.+...+++|++.+|.+ .+|...+-++...+++++|.+.+.++++..+.+..+|...+..+... ..+++.++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6788999999999875 99999999999999999999999999999999999999988665432 23567888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------------
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-------------- 1877 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~----g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g-------------- 1877 (1935)
..+++...|.+. .+|..+..++... +...+|...+.++++..|++..+..-+++++....
T Consensus 206 ~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPRNE--SPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCCCc--CHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 889999999885 7898888888773 44577999999999999999998888888887522
Q ss_pred ----CHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1878 ----DVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1878 ----~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
..++|..+++.+ . +..|=+. .+|.
T Consensus 284 ~~~~~~~~a~~~~~~l-~-~~d~ir~-~yw~ 311 (320)
T PLN02789 284 EELSDSTLAQAVCSEL-E-VADPMRR-NYWA 311 (320)
T ss_pred cccccHHHHHHHHHHH-H-hhCcHHH-HHHH
Confidence 236678888776 3 4666555 3555
No 154
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.6e-07 Score=114.93 Aligned_cols=228 Identities=18% Similarity=0.163 Sum_probs=182.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE 1771 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~ 1771 (1935)
+.-+++.|++.+|.-.||.|++.-| +....|..+.-.....+ .+..|...++||+++.|.+ .+.++|+-.|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP-----~haeAW~~LG~~qaENE--~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDP-----QHAEAWQKLGITQAENE--NEQNAISALRRCLELDPTNLEALMALAVSYT 364 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhCh-----HHHHHHHHhhhHhhhcc--chHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence 3445788999999999999998755 34679998888877777 5588999999999999986 99999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHH----H-----HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQ----R-----LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~----~-----l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
..+--..|..++...+...+ +..|+.-+. + +... .+....++|-.|-..+|....+++...++-+++-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99999999999998876432 222322210 0 0111 4566677888888888876668999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEY 1921 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~ 1921 (1935)
.|++++|...|+.||+..|.+.-+|+.|.--+......++|...|.||+. +.|.-...-|+.-| -....|.+++|-.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 77765532333333 3445788988888
Q ss_pred HHHHHHHHHHh
Q 000173 1922 VKQKAMEYVES 1932 (1935)
Q Consensus 1922 v~~rAle~v~~ 1932 (1935)
.|-.|+..-+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 88888876543
No 155
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.80 E-value=1.2e-08 Score=99.46 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCc----ccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~----~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+++|++|.|+|+++.++|+||.|.+ ++.|++|++++++ ....+..+.|++||.++|+|+++|++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4799999999999999999999975 7999999999985 44566778899999999999999866 9999999885
Q ss_pred cc
Q 000173 1542 YF 1543 (1935)
Q Consensus 1542 ~~ 1543 (1935)
.+
T Consensus 82 ~~ 83 (86)
T cd05789 82 KY 83 (86)
T ss_pred cc
Confidence 43
No 156
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.80 E-value=9.2e-09 Score=132.24 Aligned_cols=101 Identities=26% Similarity=0.486 Sum_probs=78.0
Q ss_pred EEEeCCCCEEEEEEecCcccccccccccc-cC--CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccC----ccc
Q 000173 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINN-LS--NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDH 1506 (1935)
Q Consensus 1434 l~vd~~~~ri~lSlk~~~~~~~~~~~~~~-~~--~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels----~~~ 1506 (1935)
++++ +++.|.++-............+.. .. .+++|++|.|+|++|.+||+||+|.+ +++||+|+|||+ +.+
T Consensus 611 Idi~-d~G~V~I~a~d~~~~~~A~~~I~~i~~~~~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~r 688 (719)
T TIGR02696 611 ISIE-DDGTVYIGAADGPSAEAARAMINAIANPTMPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKR 688 (719)
T ss_pred EEEe-cCcEEEEEeCCHHHHHHHHHHHHHhhCcCcCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccC
Confidence 4566 367777776543221100111111 12 57999999999999999999999986 799999999996 468
Q ss_pred ccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1507 VDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1507 ~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+.++.+.|++||.|+++|+++| +++||+|+
T Consensus 689 v~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 689 VENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 8999999999999999999999 58899886
No 157
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=5.8e-09 Score=115.72 Aligned_cols=75 Identities=33% Similarity=0.651 Sum_probs=71.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
..+|++|-|+|++|.+||+||.|+.- ++.||+|+||++..++.++.+.+++||.|-|+||++|++++.|.||||.
T Consensus 9 PeeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkr 84 (269)
T COG1093 9 PEEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKR 84 (269)
T ss_pred CCCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhh
Confidence 36899999999999999999999853 7999999999999999999999999999999999999999999999987
No 158
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.78 E-value=2e-08 Score=93.06 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.7
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
+|+++.|+|.++.++|+||+|. ++.|++|.+++++.++.++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 5899999999999999999995 5999999999998888888899999999999999999999999876
No 159
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=1.5e-07 Score=101.28 Aligned_cols=124 Identities=11% Similarity=-0.027 Sum_probs=112.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+..|++|++..|.. |..++..+.+.|++++|...|.+++...|.+...|..++..+... ++++|...|++++...|.
T Consensus 13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57899999998875 667888999999999999999999999999999999999999999 999999999999999987
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
+ +.+|..+|..+...|++++|+..|++++...|.+...|........
T Consensus 91 ~--~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 H--PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred C--cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 7 5899999999999999999999999999999999999977666544
No 160
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.78 E-value=2e-08 Score=93.05 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.5
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
|+++.|+|.++.++|+||+|.+ +..|++|++++++.++.++.+.|++||.|+++|+++|+ .+++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 7899999999999999999975 79999999999999888888899999999999999998 89999884
No 161
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.77 E-value=2.2e-06 Score=115.51 Aligned_cols=252 Identities=10% Similarity=0.007 Sum_probs=157.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++...|...|++++..+|+++.++..++..+.+.++.++|++.+++++...|... ..+.++.+....+. ...
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~------~~l~layL~~~~~~--~~~ 187 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ------NYMTLSYLNRATDR--NYD 187 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH------HHHHHHHHHHhcch--HHH
Confidence 5567899999999999999999999888888999999999999999987655311 12333333323332 234
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHH--------------------------------------------------------
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLG-------------------------------------------------------- 1768 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~-------------------------------------------------------- 1768 (1935)
|.+.|+++++..|.+ +++..+..
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 666677776665432 22111111
Q ss_pred --------------------------------------------------------------------HHHHcCChHHHH
Q 000173 1769 --------------------------------------------------------------------LYERTEQNKLAD 1780 (1935)
Q Consensus 1769 --------------------------------------------------------------------i~~~~~~~~~A~ 1780 (1935)
.|...++.++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 344555666666
Q ss_pred HHHHHHHHhcC----CCHHH--HHHHHHHHHHc-CHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHHHH
Q 000173 1781 ELLYKMIKKFK----HSCKV--WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR-------------HKHIKFISQTAILEF 1840 (1935)
Q Consensus 1781 el~~~~~k~~~----~~~~v--w~~~~~~l~~~-~~e~A~~ll~ralk~~p~-------------~~~~~~~~~~a~le~ 1840 (1935)
.+|.+++...+ ....+ ...+.-.++.+ ++++|+.+++++.+..|. ..........|+.+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 66666654321 11111 22333344455 777777777777764441 122355556677777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
-.|+..+|..+++.++...|.+..+|+.+++++...|.+.+|+.+++++.. +.|.... +-..........|+...++
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~-~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLI-LERAQAETAMALQEWHQME 504 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHH-HHHHHHHHHHhhhhHHHHH
Confidence 778888888888888888888888888888888888888888888877776 5665542 2222222233456777666
Q ss_pred HHHHHHHH
Q 000173 1921 YVKQKAME 1928 (1935)
Q Consensus 1921 ~v~~rAle 1928 (1935)
.+....++
T Consensus 505 ~~~~~l~~ 512 (822)
T PRK14574 505 LLTDDVIS 512 (822)
T ss_pred HHHHHHHh
Confidence 66655443
No 162
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.77 E-value=3.9e-08 Score=94.06 Aligned_cols=72 Identities=25% Similarity=0.423 Sum_probs=66.9
Q ss_pred CCEEEEEEEEEeeceEEEEeC---CCcEEEEECccCCCccc-CCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcc
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLS---RKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~---~~v~g~V~~s~lsd~~~-~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~ 1452 (1935)
|+++.|.|.++.++|+||+|+ ++.+|++|+++++|.+. .++.+.|++||.|+++|+++| ++++.+|+|....
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~ 76 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQ 76 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEeccc
Confidence 789999999999999999998 46999999999999986 899999999999999999999 8999999998654
No 163
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.76 E-value=7.3e-07 Score=104.60 Aligned_cols=188 Identities=11% Similarity=0.000 Sum_probs=146.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
++.....|+..+..+++.++++.|...+++++...|... .....|..++..+...++ .+.|...|+++++..|..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~la~~~~~~~~--~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--YAEQAQLDLAYAYYKSGD--YAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCC
Confidence 456788889999999999999999999999997666422 122467888888888884 599999999999988754
Q ss_pred ---HHHHHHHHHHHHc--------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChH
Q 000173 1761 ---KVHLALLGLYERT--------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHI 1829 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~--------~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~ 1829 (1935)
..|+.++.+|.+. ++++.|.+.|++++..+|.+...|..+..... +...+ .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~------~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY------LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH------HHHHH------------H
Confidence 3577777777765 77899999999999999888777654433111 11110 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
......|.+++..|++++|...|++++..+|+. ..+|...+..+.+.|++++|..+|+.+..
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 223467888999999999999999999998875 46899999999999999999999888765
No 164
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.76 E-value=3e-08 Score=95.88 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.4
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
+|+++.|+|+++.++|+||+|.+.+++|++|.+++++++.. .....|++||.|+++|+++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48999999999999999999976469999999999876422 3457899999999999999999999999
Q ss_pred ec
Q 000173 1537 GM 1538 (1935)
Q Consensus 1537 sl 1538 (1935)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 165
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=1.1e-06 Score=102.63 Aligned_cols=258 Identities=14% Similarity=0.080 Sum_probs=180.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcC-CCCHHHHHHHHHHH-HHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHH
Q 000173 1655 EIRAAEERLLEKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFM-LSMA-DVEKARSIAERALQTINIREENEKLNIWVAY 1731 (1935)
Q Consensus 1655 ~~~~~e~~~~~~~~~~a~~~ferll~~~-P~s~~lW~~y~~~~-l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay 1731 (1935)
++...-+-+-+++...+++.+.-+-..+ ..-+.+-.++...+ ++-| ++..|...++.|+..-.++. .....-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~nk 496 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALTNK 496 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhhcC
Confidence 3444433333455555555444332222 12233333333333 4444 78888888888885433322 111222
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CH
Q 000173 1732 FNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1809 (1935)
Q Consensus 1732 l~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~ 1809 (1935)
.|.....| +.++|.+.|++||....+ .+..+..+-.++..|+.++|.+.|-++-.+..++..+.+.++..|... +.
T Consensus 497 gn~~f~ng--d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANG--DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecC--cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence 23333445 568999999999866544 366777777888899999999999888877778999999999988888 99
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1810 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
.+|.++|-.+....|.. +.++.++|.+|-+.|+-.+|-+.+=...+.+|.+......++.+++...=.+++.++||+|
T Consensus 575 aqaie~~~q~~slip~d--p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 575 AQAIELLMQANSLIPND--PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHHhcccCCCC--HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999998888887 5889999999999999999988888888889998887555566666666678899999998
Q ss_pred HhcCCCchhHHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 000173 1890 ISLSLPPKKMKFLFKKYLEY-EKSVGEEERIEYVKQK 1925 (1935)
Q Consensus 1890 l~~~~~pk~~k~l~~~yl~~-E~~~G~~e~a~~v~~r 1925 (1935)
.- +.|...+ |..++.- ..+.|++.+|..+|..
T Consensus 653 al--iqp~~~k--wqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 653 AL--IQPNQSK--WQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred Hh--cCccHHH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 77 6776663 7776653 5668888888777754
No 166
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.75 E-value=1.4e-08 Score=133.31 Aligned_cols=79 Identities=32% Similarity=0.582 Sum_probs=72.5
Q ss_pred cCCCCCCcEEE-eEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~-G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
+.+.++|+++. |+|++|.+||+||+|.+ +++||||+|+|+|+++.++.+.|++||.|+|+|+++|+ ++||.||+|..
T Consensus 748 ~~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l 825 (891)
T PLN00207 748 TMVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRAL 825 (891)
T ss_pred hcCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 34678999995 69999999999999987 79999999999999999999999999999999999996 89999999986
Q ss_pred cc
Q 000173 1542 YF 1543 (1935)
Q Consensus 1542 ~~ 1543 (1935)
..
T Consensus 826 ~~ 827 (891)
T PLN00207 826 LP 827 (891)
T ss_pred cc
Confidence 43
No 167
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=1.8e-06 Score=104.63 Aligned_cols=201 Identities=11% Similarity=0.020 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+...+|-.+.+.+...+..++|..+++++++..|. . ..+|.....+...++. ..+++...++++++.+|.. .
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~----ytaW~~R~~iL~~L~~-~l~eeL~~~~~~i~~npknyq 107 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPG-N----YTVWHFRRLCLEALDA-DLEEELDFAEDVAEDNPKNYQ 107 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-h----HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHCCcchH
Confidence 344455555556666677899999999999976553 2 4689877777677773 2488999999999999875 9
Q ss_pred HHHHHHHHHHHcCCh--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQN--KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~--~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
+|....-++.+.++. +++.+.+.+++...+.+..+|...+-.+... ++++|.+.+.++|+..|.+. .+|...+.+
T Consensus 108 aW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R~~v 185 (320)
T PLN02789 108 IWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN--SAWNQRYFV 185 (320)
T ss_pred HhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch--hHHHHHHHH
Confidence 999998888888764 7889999999999999999999999888887 99999999999999999885 788888877
Q ss_pred HHHc---CC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q 000173 1839 EFKN---GV----ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~---g~----~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~----g~~e~ar~lferal~ 1891 (1935)
.... |. .+++.....+++..+|.+..+|+.+.-++... +....|...+.+++.
T Consensus 186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 7665 22 35778888899999999999999998888773 445668888999887
No 168
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.74 E-value=3.1e-08 Score=91.79 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.3
Q ss_pred CCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
|+.+.|.|.++.++|+||++.++..||+|.+++++.+..++.+.|++||.|.|+|+++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999998888888899999999999999999 99999884
No 169
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.73 E-value=2.5e-08 Score=116.06 Aligned_cols=76 Identities=33% Similarity=0.627 Sum_probs=71.3
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++|++|.|+|+++.+||+||.|.+. ++.||+|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v 82 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRV 82 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEec
Confidence 47899999999999999999999753 79999999999999999999999999999999999999999999999863
No 170
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=3.2e-06 Score=96.74 Aligned_cols=222 Identities=16% Similarity=0.139 Sum_probs=177.5
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHH
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYER 1772 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-----~~v~~~l~~i~~~ 1772 (1935)
-..+.|+|...|-..++. +.+.+..-+++.+|+..-|+ .+.|..+-+-.+.--+. .-....++.=|..
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-----d~~t~e~~ltLGnLfRsRGE--vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-----DPETFEAHLTLGNLFRSRGE--VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hhcCcchHHHHHHHHHhc-----CchhhHHHHHHHHHHHhcch--HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 345678999999888864 44556789999999999994 59999888777665443 1566778888999
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH---HHHHHHHHHHHHcCCHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI---KFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~---~~~~~~a~le~~~g~~e~A 1848 (1935)
+|-++.|.++|..+...-.........+...|... +.++|.+.-++..+..++...+ .+|-.+|+.+....+.++|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999865444566777888888888 9999999999999888775433 5667777777788899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+.++.++++.+|++..+-...++++...|+++.|...++++++ -+|.-.-.+......-+...|..++......++++
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 34433334455555556667888887777777665
No 171
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.72 E-value=5.3e-08 Score=91.01 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=68.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
++|+++.|+|.+++++|+||+++.++.|++|.+++++.+..++.+.|++||.+.++|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888999999999999999998899999985
No 172
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.72 E-value=4.5e-08 Score=91.48 Aligned_cols=71 Identities=37% Similarity=0.528 Sum_probs=67.1
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 761 PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
+|+.+.|.|.+++++|+||++.+++.||+|.+++.+.+..++...|++||.|.|+|++++++++++.||++
T Consensus 2 ~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 69999999999999999999998999999999999888778888899999999999999999999999974
No 173
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.71 E-value=6.9e-07 Score=112.72 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=176.6
Q ss_pred cCCCCcHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--ccchhhH-HHHHHHHHHH
Q 000173 1666 KDAPRTPDEFERLVRS--------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENEK-LNIWVAYFNL 1734 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~--------~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~--~~ee~Ek-l~lW~ayl~l 1734 (1935)
++...|...|++++.. .|.-...-..++.+|+.++++++|..+|++|+...- +.++-+. ..+...+..+
T Consensus 213 g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~l 292 (508)
T KOG1840|consen 213 GRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVL 292 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4577888888888876 677677777899999999999999999999996211 1111111 2556666667
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--------CCHHHH
Q 000173 1735 ENEYGNPPEEAVVKVFQRALQYCDP------K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKVW 1797 (1935)
Q Consensus 1735 e~~~g~~~~e~a~~vferAl~~~~~------~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~--------~~~~vw 1797 (1935)
+...|.+ ++|+..++||+.+... . ..+..++.++...+++++|..+|+++++++. .-..++
T Consensus 293 y~~~GKf--~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 293 YYKQGKF--AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HhccCCh--HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 7788854 9999999999976532 1 6666777788999999999999999998863 347788
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCC---Ch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCH
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KH---IKFISQTAILEFKNGVADRGRSMFEGILSE-------YPKRT 1863 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~---~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~-------~Pk~~ 1863 (1935)
.+++..++.+ ++++|+++|+.|++..... .+ -..+-.+|..+.+.+.+.+|-.+|+++... +|.-.
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 9999999999 9999999999999976221 11 245667777788999999999999998765 34455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+..++-.|.+.|+++.|..+.++++.
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6789999999999999999999999985
No 174
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.70 E-value=2.1e-08 Score=127.39 Aligned_cols=86 Identities=31% Similarity=0.597 Sum_probs=80.8
Q ss_pred cchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1368 ~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
.....+++|++|+++.|.|.+|.++|+||+||-+.+|+||++.+|+.|+.+|.+.+++||.|+++|+++|...+||.||+
T Consensus 648 ~~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsm 727 (780)
T COG2183 648 EGVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSM 727 (780)
T ss_pred hhhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEe
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccc
Q 000173 1448 KTSDSR 1453 (1935)
Q Consensus 1448 k~~~~~ 1453 (1935)
+.....
T Consensus 728 r~~~~~ 733 (780)
T COG2183 728 RLDEEE 733 (780)
T ss_pred eccCCc
Confidence 986653
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=3.3e-07 Score=114.48 Aligned_cols=213 Identities=14% Similarity=0.107 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1769 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i 1769 (1935)
..|+..+++.|=...|..+|+|. ..|-..+.++...| ...+|..+..+-++..|....|-.++++
T Consensus 402 ~~laell~slGitksAl~I~Erl-------------emw~~vi~CY~~lg--~~~kaeei~~q~lek~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL-------------EMWDPVILCYLLLG--QHGKAEEINRQELEKDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH-------------HHHHHHHHHHHHhc--ccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence 34555566666666666665543 35776666666666 4466666666666633333555555655
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
..+..-|++|.++++.... .+...++...+.+ +++++.+.|++++..+|-. +..|+.++.+..+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~sa------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhH------HHHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhhHHH
Confidence 5444444444444433221 1223333333344 5555555666665555554 35555555555555555566
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
...|.+++...|.+...|+++.-.+++.++..+|+..+.+|+. ++-.+. .+|..|+-.-.+-|..+.|...|.|-++
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6666666655666555566666666665555566666666555 222333 3555555555555555555555555443
No 176
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=6.3e-07 Score=118.55 Aligned_cols=136 Identities=12% Similarity=0.123 Sum_probs=128.8
Q ss_pred hcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHH
Q 000173 1755 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS 1833 (1935)
Q Consensus 1755 ~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~ 1833 (1935)
.|...-..+..++.+..+.|.+++|..++++++...|++...|..++..+.+. ++++|...+++++...|.+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--AREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC--HHHHH
Confidence 34444588999999999999999999999999999999999999999999999 9999999999999999988 58999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
.+|.++.+.|++++|..+|++++..+|...++|..|+..+...|+.+.|...|++|+..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999983
No 177
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.70 E-value=4.6e-08 Score=94.94 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.0
Q ss_pred CCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCc---ccccCcccccCCCCEEEEEEEEEecCCCeeEEecc
Q 000173 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~---~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK 1539 (1935)
.+++|+++.|+|+++.+| |+||+|.+ +.+||+|+||++| .++.++.+.|++||.|.|+|++.....+...|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 578999999999999997 99999986 7999999999998 66778889999999999999998766666666554
No 178
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=5.8e-07 Score=101.95 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHc-C--HHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL-LKQ-Q--QEGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l-~~~-~--~e~A~~ll~r 1818 (1935)
+.+...++++++.+|.+ ..|..++.+|...+++++|.+.|+++++..|++..+|..|+..+ ... + .++|+++|++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 44444455555554443 45555555555555555555555555555555555555555433 222 2 3455555555
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+++..|.+ +.++..+|..++..|++++|...|+++++..|.
T Consensus 136 al~~dP~~--~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 136 ALALDANE--VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHhCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55554444 344455555555555555555555555544444
No 179
>PHA02945 interferon resistance protein; Provisional
Probab=98.69 E-value=7.1e-08 Score=89.49 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccC--CCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~--~v~g~V~~s~l--sd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
.+|+++-|+|+. .++|+||.|.. +++|++|+++. +..|+++ ++.+ +||.+.|+|+++|+..+.|.||||...
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 589999999999 99999999964 79999999965 9999999 9999 999999999999999999999999754
No 180
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.68 E-value=7.3e-08 Score=91.48 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=60.9
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
.+.++++|+++.|+|+++++||+||.+.+ ++.||+|.|++. ..|+.||.++++|.++ .++++|.|++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46789999999999999999999999987 699999999863 4599999999999999 7999999875
No 181
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=1.6e-06 Score=101.73 Aligned_cols=165 Identities=11% Similarity=0.047 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1835 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~---~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~ 1835 (1935)
..++.++..+...++++.|...|+++++.+|.++ ..|+.++..++.. ++++|...|++++...|.+.+. ..|...
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 6778888888888888888888888888887654 5778888888888 8888888888888888876432 356777
Q ss_pred HHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1836 AILEFKN--------GVADRGRSMFEGILSEYPKRTDLWS-----------------IYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1836 a~le~~~--------g~~e~Ar~ife~al~~~Pk~~dlw~-----------------~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+..++.. |+++.|...|++++..+|++...|. ..++++++.|+++.|...|++++
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al 193 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV 193 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777655 6788888888888888888765442 34677888999999999999999
Q ss_pred hcCC-CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1891 SLSL-PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1891 ~~~~-~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
.... .|... ..|........+.|+.+++...++..
T Consensus 194 ~~~p~~~~~~-~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 194 ENYPDTPATE-EALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHCCCCcchH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8211 12233 56777788888899999988877654
No 182
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.68 E-value=7.5e-07 Score=117.84 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKM---IKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~---~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
.++.++-.+..+++....+.+.+-++ ...|++..+.++.++....+. .+++|..+++++++..|.+ ..++..||
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--~~a~~~~a 127 (694)
T PRK15179 50 ELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--SEAFILML 127 (694)
T ss_pred HHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--HHHHHHHH
Confidence 33344445555666555555555444 467889999999999999999 9999999999999999988 59999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
..+.+.+.+|+|+..+++++...|++....+.++..+.+.|.+++|..+|++++. ..|... ..|..|....++.|+.
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~-~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFE-NGYVGWAQSLTRRGAL 204 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcH-HHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999998 555655 5899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000173 1917 ERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1917 e~a~~v~~rAle~v 1930 (1935)
++|...|++|++..
T Consensus 205 ~~A~~~~~~a~~~~ 218 (694)
T PRK15179 205 WRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 183
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.9e-06 Score=94.40 Aligned_cols=183 Identities=14% Similarity=0.148 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhcCCCH----HHHHHH---HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK----KVHLAL---LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1815 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~----~v~~~l---~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~l 1815 (1935)
++..+++...+.+.... +.|.-| +-.....++.+.|..+++++..+||.+..+-..+|.++... ++++|.++
T Consensus 29 eevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~ 108 (289)
T KOG3060|consen 29 EEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEY 108 (289)
T ss_pred HHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHH
Confidence 44555555444443321 333333 33344567778888888888888888888877777777777 88888888
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~ 1895 (1935)
|++.+.-.|.+. .++.+-..+...+|..-.|..-+-..+..+|.+.++|..++.+++..|++++|--.+|.++- ..
T Consensus 109 y~~lL~ddpt~~--v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~ 184 (289)
T KOG3060|consen 109 YESLLEDDPTDT--VIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQ 184 (289)
T ss_pred HHHHhccCcchh--HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cC
Confidence 888888777764 44555555566677777777777788888888888888888888888888888888888776 55
Q ss_pred chhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 000173 1896 PKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1896 pk~~k~l~~~yl~~E~~~G---~~e~a~~v~~rAle~v~ 1931 (1935)
|.+. .+|.+|.+.....| +.+.++..|+||++.-.
T Consensus 185 P~n~-l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 185 PFNP-LYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CCcH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 6555 57788877655555 45567777887776543
No 184
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=1.7e-06 Score=108.17 Aligned_cols=187 Identities=11% Similarity=-0.031 Sum_probs=102.0
Q ss_pred CCCCcHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHH---HHHHHHHHcCC
Q 000173 1667 DAPRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYGN 1740 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s---~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~---ayl~le~~~g~ 1740 (1935)
+.+.+...|.+.....|.+ ...+.-.+..+...+++++|...+++++...|... ..|. .+..+....+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~- 94 (355)
T cd05804 21 ERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG- 94 (355)
T ss_pred CcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc-
Confidence 3444456666666555432 34444445555666677777777777766544321 2232 1222212223
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1741 ~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
....+.+.++.+....+.. ..+..++.++...|++++|.+.|++++...|.+...|..++..+.+. ++++|...|++
T Consensus 95 -~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 95 -MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred -CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 1233333333321222222 33334555666677777777777777766666666666666666666 77777777777
Q ss_pred HHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1819 ALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1819 alk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
++...|... ....|..+|.++...|++++|..+|++++...|
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 766655321 123455666666677777777777777655444
No 185
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.67 E-value=7.1e-08 Score=89.35 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=64.4
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+|+++.|.|.++.++|+||+++ +++|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4899999999999999999998 7999999999999998899999999999999999999999999875
No 186
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.66 E-value=2.8e-08 Score=126.33 Aligned_cols=79 Identities=33% Similarity=0.653 Sum_probs=75.1
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+.+|++|+++.|+|+++.+||+||.|+ -..+||+|+|++++.++.++.+.+++||.|+++|+++|..++||.|||+..
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~~ 730 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRLD 730 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeecc
Confidence 4679999999999999999999999996 488999999999999999999999999999999999999999999999874
No 187
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=4.4e-07 Score=102.94 Aligned_cols=118 Identities=12% Similarity=0.152 Sum_probs=110.6
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH-HHcCC--HHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE-FKNGV--ADRG 1848 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le-~~~g~--~e~A 1848 (1935)
.++.+++...|+++++..|++...|+.++..++.. +++.|...|++|++..|.+ ..+|..+|..+ +..|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~--~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN--AELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCCCcHHH
Confidence 56678899999999999999999999999999999 9999999999999999987 59999999964 67787 5999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
+.+|+++++.+|++...|+.++..++..|++++|...|++++..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999983
No 188
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=4.4e-06 Score=97.86 Aligned_cols=223 Identities=16% Similarity=0.130 Sum_probs=178.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------------------------------HHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------------------------------VEKARSIAE 1710 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e----------------------------------~dkAr~v~e 1710 (1935)
.++..+++..|++....+|+....--.|+-..-+.|+ +..|....+
T Consensus 245 ~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 245 NGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred hcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 4566677777777777777666555555555444444 444555555
Q ss_pred HHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 000173 1711 RALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKK 1789 (1935)
Q Consensus 1711 rAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~ 1789 (1935)
++++.-+ +. ...++.-.++..+.+ ..++|.-.|+.|....|.. ..|.-+...|...+++.+|.-+-..+.+.
T Consensus 325 K~I~~~~-r~----~~alilKG~lL~~~~--R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 325 KCIDSEP-RN----HEALILKGRLLIALE--RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHhccCc-cc----chHHHhccHHHHhcc--chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 5553322 11 235566667778888 4489999999999999886 99999999999999999999999999999
Q ss_pred cCCCHHHHHHHH-HHHHHc--CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1790 FKHSCKVWLRRV-QRLLKQ--QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1790 ~~~~~~vw~~~~-~~l~~~--~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
++++......++ ..++.. --++|..+|+++|+..|.. +.+....|.++...|..+.+..++|+.|..+|+. .+.
T Consensus 398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH 474 (564)
T KOG1174|consen 398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLH 474 (564)
T ss_pred hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHH
Confidence 999999888885 555555 7899999999999999988 6899999999999999999999999999999985 688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..++|+......+.+|...|..|+. ..|+.-
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 8899999999999999999999999 666554
No 189
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=2.8e-07 Score=115.07 Aligned_cols=199 Identities=13% Similarity=0.167 Sum_probs=168.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
.-.|...|||+ .+|-..+.+|...|...+|.++..|-++.-|. ..+|..++.+-.. -
T Consensus 414 tksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d------~~lyc~LGDv~~d---------~ 470 (777)
T KOG1128|consen 414 TKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD------PRLYCLLGDVLHD---------P 470 (777)
T ss_pred HHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc------chhHHHhhhhccC---------h
Confidence 33455566665 78999999999999999999999988873331 2356666555222 3
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1748 KVFQRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1748 ~vferAl~~~~~~--~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
..|++|.++.+.. .....++....+.++|++|...|++.++.++-....|+.++...++. +++.|.+.|.+++...|
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 4566776665543 44455666666789999999999999999999999999999999999 99999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+. ..|.+++..+.+.++-.+|+..+..+++.+-++..+|.+|+....+-|.++.|...|.|.+.
T Consensus 551 d~~--eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 551 DNA--EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred Cch--hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 884 99999999999999999999999999999988899999999999999999999999999987
No 190
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.64 E-value=2.5e-06 Score=114.99 Aligned_cols=199 Identities=10% Similarity=0.002 Sum_probs=162.2
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-
Q 000173 1680 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD- 1758 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~- 1758 (1935)
...|+....-...+-...+.|+++.|+..++++++..|-.. ..++ .++.+....|+ .++|...+++|+.-.+
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~----~av~-dll~l~~~~G~--~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS----GQVD-DWLQIAGWAGR--DQEVIDVYERYQSSMNI 100 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch----hhHH-HHHHHHHHcCC--cHHHHHHHHHhccCCCC
Confidence 34677777666666677899999999999999997666321 0123 67777777794 5999999999993222
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1759 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
+......++.+|...+++++|.++|+++++..|+++.++..++..+... +.++|.+.++++.+..|... .+...+.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~---~~l~lay 177 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ---NYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH---HHHHHHH
Confidence 2356666688999999999999999999999999999999888888888 99999999999999998753 3355566
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
++...++..+|...|++++..+|.+.+++..|...+.+.|-...|..+..+
T Consensus 178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 666677777799999999999999999999999999999988888776664
No 191
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.63 E-value=8.7e-06 Score=93.25 Aligned_cols=263 Identities=15% Similarity=0.096 Sum_probs=196.8
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc----hhhHH----HHHHHHHHHHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE----ENEKL----NIWVAYFNLENE 1737 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e----e~Ekl----~lW~ayl~le~~ 1737 (1935)
++.--+..+++|.|...|+...+-++-+..++.+|+++.|..-|...|+.-|..+ -++++ .-|...-.+-..
T Consensus 86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~ 165 (504)
T KOG0624|consen 86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA 165 (504)
T ss_pred cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4466677899999999999999999999999999999999999999998766432 22333 345444444344
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHH
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAV 1815 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~l 1815 (1935)
++.-+-..|.+.....|+..|+. .+|...+.+|..-+....|..-+..+.+.-.++...++.....++.. +.+.+...
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 43224588999999999999997 89999999999999999999999999998899999999999999998 99999999
Q ss_pred HHHHHHhCCCCChH-HHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHH
Q 000173 1816 VQRALLSLPRHKHI-KFISQTA---------ILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1816 l~ralk~~p~~~~~-~~~~~~a---------~le~~~g~~e~Ar~ife~al~~~Pk~~d----lw~~ya~~e~k~g~~e~ 1881 (1935)
...+|+.+|.++.+ ..|..+- .-....+++..+..-.|+.++..|.-+. ........+...+++-+
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 99999999998643 1222111 1122567788888889999999888433 34444455556788888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1882 ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|.....+++. +.|..+. .+..-.+-..-.-.++.|..-|++|+++=+
T Consensus 326 AiqqC~evL~--~d~~dv~-~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 326 AIQQCKEVLD--IDPDDVQ-VLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHh--cCchHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 9988999888 7777663 333222222222346677777777776543
No 192
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.63 E-value=8.3e-08 Score=93.46 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd----~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
.++|++|.|.|+++.++|+||.++.+.+|++|++++++ .+..+..+.|++||.+.|+|++++++ +++.||++...
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 46899999999999999999999999999999999996 45567778899999999999999875 99999998743
No 193
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.62 E-value=6.5e-08 Score=127.12 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=77.0
Q ss_pred cCCCCCEEE-EEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1375 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1375 ~lk~G~~v~-G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
+.++|+++. |.|++|.++|+||+|.++++|+||+++|+|.++.++.+.|++||.|+++|+++|+ .+||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 468999996 6999999999999999999999999999999999999999999999999999997 89999999999988
Q ss_pred cccc
Q 000173 1454 TASQ 1457 (1935)
Q Consensus 1454 ~~~~ 1457 (1935)
||..
T Consensus 829 Pw~~ 832 (891)
T PLN00207 829 ANSE 832 (891)
T ss_pred chhh
Confidence 8853
No 194
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.61 E-value=2.3e-07 Score=104.13 Aligned_cols=103 Identities=20% Similarity=0.390 Sum_probs=81.6
Q ss_pred cEEEEEE---EEEeCCCCEEEEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEec---------Ccee
Q 000173 1427 KLVAGRV---LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLV 1494 (1935)
Q Consensus 1427 ~~V~~kV---l~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~---------~~v~ 1494 (1935)
..+.+.+ +++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++.
T Consensus 31 ~~i~as~~G~~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~ 99 (189)
T PRK09521 31 GEVYASVVGKVFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKL 99 (189)
T ss_pred CEEEEEeeEEEEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCce
Confidence 3444444 3456667777662 3321 13467899999999999999999999952 2588
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1495 Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
|++|++++++....++.+.|++||.|.|+|++++ +++.||+|...+
T Consensus 100 G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~~l 145 (189)
T PRK09521 100 AYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGKDL 145 (189)
T ss_pred eeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecCCc
Confidence 9999999999988889999999999999999998 789999987543
No 195
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.60 E-value=1.3e-07 Score=91.20 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=69.3
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
.++|++|.|+|.++.+.|++|.+.. ..+|++|.++++....+++.+.|++||.+.|+|+++|.+ +++.||++...+
T Consensus 4 p~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~~ 79 (82)
T cd04454 4 PDVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNEL 79 (82)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCCC
Confidence 4789999999999999999999964 899999999999888888899999999999999999976 999999987443
No 196
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.60 E-value=9e-06 Score=102.56 Aligned_cols=250 Identities=16% Similarity=0.117 Sum_probs=186.2
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
+...+|+++..+|+|+.+-..++-.|..+.+++.|.....++++..+.. ....|.-++-+...++ ....|..+.
T Consensus 463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~----~~~~whLLALvlSa~k--r~~~Al~vv 536 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGD----SAKAWHLLALVLSAQK--RLKEALDVV 536 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHhhhh--hhHHHHHHH
Confidence 4556788999999999888888888889999999999999999754432 2567888877777777 447788888
Q ss_pred HHHHhcCCCH----------------------------HHHHHHHH----------------HHHHcCChHHHHHHHHHH
Q 000173 1751 QRALQYCDPK----------------------------KVHLALLG----------------LYERTEQNKLADELLYKM 1786 (1935)
Q Consensus 1751 erAl~~~~~~----------------------------~v~~~l~~----------------i~~~~~~~~~A~el~~~~ 1786 (1935)
.-|+...+.+ .+|.+.-. +-....+..+|...+..+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 8888665441 11221000 000111233333333332
Q ss_pred HHhc-------------C-------------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1787 IKKF-------------K-------------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1787 ~k~~-------------~-------------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
.+.- | ....+|+..+..+... +.++|+..+..|-+.+|.. ...|...|..+
T Consensus 617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~--~~~~~~~G~~~ 694 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS--ASVYYLRGLLL 694 (799)
T ss_pred HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh--HHHHHHhhHHH
Confidence 2110 0 0146788888888888 8899999999998888777 48889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG--LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~--lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
...|..++|...|..++..+|.+.......+.++.+.|+..-|.. ++..|+. +.|.+. ..|.......++.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~-eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNH-EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCH-HHHHHHHHHHHHccchH
Confidence 999999999999999999999999999999999999887655544 8888888 777777 58988888889999999
Q ss_pred HHHHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1918 ~a~~v~~rAle~v~ 1931 (1935)
.|-.+|+-|++.-.
T Consensus 772 ~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 772 QAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999887644
No 197
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.59 E-value=1.3e-07 Score=88.23 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.6
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc--ccCcccccCCCCEEEEEEEEEecCCC
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~--~~~~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
|++|.|+|+++.++|+||+|.+ +++|++|++++++.+ ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~-~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLAD-NVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCC-CcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999976 899999999999884 77888999999999999999996543
No 198
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=6.7e-06 Score=104.27 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=145.6
Q ss_pred HcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC-----CCHHHHHHHHH
Q 000173 1680 RSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-----PPEEAVVKVFQ 1751 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l---~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~-----~~~e~a~~vfe 1751 (1935)
..-|.++.+|+.|+.-.. +..+...+...|++|+..-+ ..++|..|+++...+++ ...+..+.+|+
T Consensus 141 ~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~------~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ 214 (881)
T KOG0128|consen 141 EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN------SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFE 214 (881)
T ss_pred HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc------cchHHHHHHHHHHhccccccccccchhhhHHHH
Confidence 446999999999988765 44578888999999995333 37899999999877664 13578899999
Q ss_pred HHHhcCCC-----HHHHHHHHH---HHHHcCChHHHHHHHHHHHHhcC-CCHHHH--HHHH--HHHHHc--CHHH-----
Q 000173 1752 RALQYCDP-----KKVHLALLG---LYERTEQNKLADELLYKMIKKFK-HSCKVW--LRRV--QRLLKQ--QQEG----- 1811 (1935)
Q Consensus 1752 rAl~~~~~-----~~v~~~l~~---i~~~~~~~~~A~el~~~~~k~~~-~~~~vw--~~~~--~~l~~~--~~e~----- 1811 (1935)
||+..... ..+|..|.. .|..+...+....+|.+.++..- .....| .... ..+... +++.
T Consensus 215 ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l 294 (881)
T KOG0128|consen 215 RALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNL 294 (881)
T ss_pred HHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHH
Confidence 99987654 255555544 56556656667777777665431 111111 1111 111111 3333
Q ss_pred --HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 000173 1812 --VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFER 1888 (1935)
Q Consensus 1812 --A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~-k~g~~e~ar~lfer 1888 (1935)
.+..|++.++..|.. ...|+.|..+++..|++-+-..++++++..++.+.++|..|..+.- .++-.+++-..+-|
T Consensus 295 ~~~~~~~e~~~q~~~~~--~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~r 372 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIK--DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPR 372 (881)
T ss_pred HHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccch
Confidence 334566677777665 3899999999999999999999999999999999999988876543 34444555555666
Q ss_pred HHhcCCCchhHHHHHHHHH
Q 000173 1889 AISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1889 al~~~~~pk~~k~l~~~yl 1907 (1935)
++. .+|-.. .+|.+|+
T Consensus 373 a~R--~cp~tg-dL~~ral 388 (881)
T KOG0128|consen 373 AVR--SCPWTG-DLWKRAL 388 (881)
T ss_pred hhc--CCchHH-HHHHHHH
Confidence 655 333333 4566655
No 199
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=6.8e-08 Score=120.82 Aligned_cols=104 Identities=25% Similarity=0.545 Sum_probs=85.5
Q ss_pred EEEeCCCCEEEEEEecCccccccccc-ccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCccc
Q 000173 1434 LSVEPLSKRVEVTLKTSDSRTASQSE-INNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1512 (1935)
Q Consensus 1434 l~vd~~~~ri~lSlk~~~~~~~~~~~-~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~ 1512 (1935)
+.++ +++.|.++-............ .....++++|+++.|+|+++.+||+||.|.+ +-+||||+|++++.++....+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 4555 678888777654322111111 1125789999999999999999999999987 889999999999999999999
Q ss_pred ccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1513 IYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1513 ~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
.+++||.|.++++.+| +++|+.||+|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 78999999986
No 200
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.58 E-value=1.4e-06 Score=92.59 Aligned_cols=117 Identities=10% Similarity=-0.029 Sum_probs=90.4
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+.|++++...|.. ...+.++..+.+.+++++|.++|++++...|.+..+|..++.++... ++++|...|+++++..|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3577777777765 66777777777888888888888888877777888888888888777 888888888888877766
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
. ..+|...|.++...|++++|...|+++++..|.+...+
T Consensus 84 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D--PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 5 47777788888888888888888888888887776643
No 201
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.58 E-value=2e-05 Score=98.60 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
+|++...|...+.++...++.+.|...+.++.+..+.+- .....+..........| +.+.|...++++++..|..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~ 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA--TERERAHVEALSAWIAG--DLPKALALLEQLLDDYPRDL 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcH
Confidence 466666666666666666666666666666555444221 11112333333444455 3366666666666666554
Q ss_pred HHHH---HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHL---ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~---~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|. .+.......+....+.+.+.......+.....+..++..+..+ ++++|...|++++...|.+ ..++..+|
T Consensus 78 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--~~~~~~la 155 (355)
T cd05804 78 LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--AWAVHAVA 155 (355)
T ss_pred HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--cHHHHHHH
Confidence 2322 1222222233444444444332223333444444455555555 6666666666666666655 24556666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+++..|++++|...|++++...|.. .+.|..++.++...|++++|..+|++++.
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666666666666655432 23455566666666666666666666653
No 202
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.3e-05 Score=89.32 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=152.4
Q ss_pred CCCcHHHHHHHHHcCCC---CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC
Q 000173 1668 APRTPDEFERLVRSSPN---SSFVWIKYMAFM---LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~---s~~lW~~y~~~~---l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~ 1741 (1935)
..+-...+...+...+. ..+.|.-|=+.. +..++.+-|..++.+....+|.+. .+-.-++.+....|.+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~-----RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK-----RVGKLKAMLLEATGNY 102 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHhhch
Confidence 44444555555544433 356776665443 577899999999999888887544 3444455555666744
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
+.|.++|++.++-+|.+ -+|.+-+.+....|+.-+|.+.+..-+++|....++|..++..|+.. ++++|.-.|+.+
T Consensus 103 --~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 --KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred --hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88999999999999886 77777888888899999999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
+-..|.. +-.+..+|.++|..| +.+-||++|++++..+|++...|+-
T Consensus 181 ll~~P~n--~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 181 LLIQPFN--PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 9998877 478889999988777 6778999999999999988877764
No 203
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.57 E-value=1.8e-07 Score=87.24 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=58.3
Q ss_pred CCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--cCCccccCCCCcEEEEEEEEEeCCC
Q 000173 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLS 1440 (1935)
Q Consensus 1379 G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~--~~~~~~~f~~G~~V~~kVl~vd~~~ 1440 (1935)
|++|.|.|+++.++|+||.|+.+++|++|+++++++| ..+|.+.|++||.|.|+|+++|.++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~ 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCcc
Confidence 7899999999999999999999999999999999986 7889999999999999999999644
No 204
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.57 E-value=2.2e-07 Score=90.27 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCC---cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1375 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~V~~s~lsd---~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.+++|+++.|+|+++.++ |+||+|+++.+|++|+++++| ..+.++.+.|++||.|.++|+......+...||.+-
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 467999999999999996 999999999999999999999 567788899999999999999987766666666543
No 205
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.55 E-value=3.9e-07 Score=86.54 Aligned_cols=67 Identities=25% Similarity=0.442 Sum_probs=61.3
Q ss_pred cccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
.+++++.|+.+.|.|++++++|+||++.+++.||+|.+++. ..|++||.++++|.++ .+++|+.||+
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 45678899999999999999999999999999999999863 4599999999999999 8899999885
No 206
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.54 E-value=3.3e-07 Score=88.61 Aligned_cols=70 Identities=30% Similarity=0.448 Sum_probs=62.3
Q ss_pred CCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
+|+++.|+|++++++|+||+|++ +++|++|++++++.+.. .+...|++||.|+++|+++|.+.+++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 38999999999999999999998 79999999999976421 3457899999999999999998999999
Q ss_pred EE
Q 000173 1446 TL 1447 (1935)
Q Consensus 1446 Sl 1447 (1935)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 207
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.54 E-value=2.8e-07 Score=88.82 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=69.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
++|++|.|+|+++.++|++|+++...+|++|+++++..+..++.+.|++||.+.|+|++++.+ +++.||++...
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 689999999999999999999999999999999999988888999999999999999999976 99999998743
No 208
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=1.5e-05 Score=91.27 Aligned_cols=217 Identities=12% Similarity=0.057 Sum_probs=178.0
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
.....|-..|..++..+|++..+..+-+..|+..|.-..|..-+.|.|+.-| ++ .-.-++...+.+..| ..++
T Consensus 52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp---DF--~~ARiQRg~vllK~G--ele~ 124 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP---DF--MAARIQRGVVLLKQG--ELEQ 124 (504)
T ss_pred hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc---cH--HHHHHHhchhhhhcc--cHHH
Confidence 3466778899999999999999999999999999999999999999997654 21 245677788889999 5699
Q ss_pred HHHHHHHHHhcCCCH----HHHHHHHH------------HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1746 VVKVFQRALQYCDPK----KVHLALLG------------LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1746 a~~vferAl~~~~~~----~v~~~l~~------------i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
|.+-|+..|+..|++ ..+..++- -+.-+|++..|.++...++...+....++...+.+|... +
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 999999999999853 33333322 345678999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHc
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ------------EIRL 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~------------e~k~ 1876 (1935)
+..|..-+..+-+.-..+ -+.++..+++++..|+.+.+....+.+|+.+|+...-+-.|-.+ .+..
T Consensus 205 ~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~ 282 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEE 282 (504)
T ss_pred HHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888776555 48999999999999999999999999999999875544333322 2345
Q ss_pred CCHHHHHHHHHHHHh
Q 000173 1877 GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1877 g~~e~ar~lferal~ 1891 (1935)
+++..+..-.+.++.
T Consensus 283 ~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLK 297 (504)
T ss_pred hhHHHHHHHHHHHHh
Confidence 777777788888887
No 209
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.53 E-value=1.5e-07 Score=124.88 Aligned_cols=77 Identities=35% Similarity=0.673 Sum_probs=72.0
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++++|+++.|+|+++.+||+||+|.+ +.+||+|+|++++.++.++.+.|++||.|+|+|+++|++ +||.||+|..
T Consensus 616 ~~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 616 TAEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred cccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 3568999999999999999999999986 799999999999999999999999999999999999977 9999999863
No 210
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.53 E-value=1.7e-07 Score=120.75 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccC----cccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls----~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
++++|+++.|.|++|++||+||++.+|+.||+|+|+++ +.++.++++.|++||.|+|+|+++|+ ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 46899999999999999999999999999999999996 47889999999999999999999995 7899886
No 211
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.50 E-value=3.3e-07 Score=106.75 Aligned_cols=78 Identities=23% Similarity=0.425 Sum_probs=72.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC--CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~--~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++|++|.|.|++|.++|+||+|.. +++|++|++++++.+..++.+.|++||.|.|+|+++|+++++|.||+|....+
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~~ 85 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNEH 85 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEecccc
Confidence 3689999999999999999999975 79999999999999999999999999999999999999999999999976543
No 212
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.9e-06 Score=92.66 Aligned_cols=117 Identities=9% Similarity=-0.050 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1857 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~ 1857 (1935)
-..+|++++...|. .|+.++..+... ++++|...|++++...|.+ ..+|..+|..+...|++++|...|++++.
T Consensus 12 ~~~~~~~al~~~p~---~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 12 PEDILKQLLSVDPE---TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS--WRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35788888887543 477888888888 9999999999999999887 59999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHH
Q 000173 1858 EYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLF 1903 (1935)
Q Consensus 1858 ~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~ 1903 (1935)
..|.+.+.|..++..+...|++++|+..|++++. +.|... ..|
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~-~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADA-SWS 129 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHH
Confidence 9999999999999999999999999999999999 777776 344
No 213
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=2.4e-06 Score=90.87 Aligned_cols=115 Identities=10% Similarity=-0.015 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1781 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1781 el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
++|++++...|.+....+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|..+|++++...
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN--SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 568888888888888899999999999 9999999999999999876 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1860 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1860 Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
|.+.+.|..++.++...|+.++|...|++++. +.|...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 119 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENP 119 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccc
Confidence 99999999999999999999999999999998 555444
No 214
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.2e-07 Score=105.61 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.|..+.|+|.+|.+||+||.+. +|+.||+|.|+++...+.++.+++++||.|.|+|++||+.++-+-||||....
T Consensus 11 eGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~ 87 (269)
T COG1093 11 EGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTE 87 (269)
T ss_pred CCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCH
Confidence 6999999999999999999986 69999999999999999999999999999999999999999999999998754
No 215
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.48 E-value=2.5e-07 Score=84.48 Aligned_cols=65 Identities=35% Similarity=0.527 Sum_probs=60.5
Q ss_pred EEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEe
Q 000173 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1935)
Q Consensus 765 ~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LS 829 (1935)
+.|+|.++.++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 36899999999999999999999999999998887788889999999999999999999999875
No 216
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=1.7e-05 Score=93.06 Aligned_cols=214 Identities=12% Similarity=0.100 Sum_probs=159.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..++...-+.++..+..++.+..+-......+|++++|.+.|..||..-. ..........--...+| ..++|.
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-----sc~ealfniglt~e~~~--~ldeal 544 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-----SCTEALFNIGLTAEALG--NLDEAL 544 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-----HHHHHHHHhcccHHHhc--CHHHHH
Confidence 44555555566666677777777766666778999999999999995322 11112222222245567 458888
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~-~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+.|-+.-... +.-++...++++|+...+...|.++|.++....|+.+.+...++..|-+. +-.+|.+++-..-..+|.
T Consensus 545 d~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 545 DCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 8877665443 33488899999999999999999999999999999999999999988888 888888888888888887
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI-YLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~-ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+ +++..-+|..|....=.|+|..+||++--..|... -|.. .+....+.|++.+|..+|...-.
T Consensus 625 n--ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~-kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 625 N--IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS-KWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred c--hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH-HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7 56666677777777778999999999988888754 4544 44555678999999999988666
No 217
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.45 E-value=4e-07 Score=83.14 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.2
Q ss_pred EEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1382 v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
+.|+|.++.++|+||+++.+.+|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999988888999999999999999999989998875
No 218
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=2.2e-05 Score=104.55 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=141.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC----------------CHH
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP----------------PEE 1744 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~----------------~~e 1744 (1935)
.+|.+..+|..++..+...+++++|..+.+.+++..|-+ +.+|+..+.++.+.+.+ ...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~-----i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~ 100 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS-----ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWA 100 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc-----eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchh
Confidence 468999999999999999999999999999999876632 34555544455554422 011
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCC
Q 000173 1745 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p 1824 (1935)
....++.+.+.+..+...++.++.+|.+.|++++|..+|+++++..+.++.+..+||.+|...++++|++++.+|++.+=
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 22223333333333346888889999999999999999999999999999999999988877799999999999987643
Q ss_pred CCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1825 RHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1825 ~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P--k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
..++ ..+|..+.... .-+.+.=..+.++++.... .-.++|.-.-..+...++++++..+|.+++. ..|++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n 256 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKN 256 (906)
T ss_pred hhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcc
Confidence 2211 12333333211 1123333333334333321 2233444444555566788899999999998 66665
Q ss_pred HH
Q 000173 1899 MK 1900 (1935)
Q Consensus 1899 ~k 1900 (1935)
.+
T Consensus 257 ~~ 258 (906)
T PRK14720 257 NK 258 (906)
T ss_pred hh
Confidence 53
No 219
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.42 E-value=7.2e-07 Score=89.27 Aligned_cols=73 Identities=25% Similarity=0.539 Sum_probs=63.3
Q ss_pred cEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccC-----------cccccCCCCEEEEEEEEEecCC-----Ce
Q 000173 1470 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1533 (1935)
Q Consensus 1470 ~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~-----------~~~~~~~Gd~V~~~Il~id~~~-----~r 1533 (1935)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.+. ++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999996 499999999998876543 3478999999999999999774 58
Q ss_pred eEEeccccccC
Q 000173 1534 ISLGMKSSYFK 1544 (1935)
Q Consensus 1534 i~lslK~~~~~ 1544 (1935)
|.||+|..+++
T Consensus 79 i~ls~k~~~~g 89 (99)
T cd04460 79 IGLTMRQPGLG 89 (99)
T ss_pred EEEEEecCCCC
Confidence 99999997764
No 220
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.39 E-value=5e-07 Score=119.72 Aligned_cols=72 Identities=36% Similarity=0.698 Sum_probs=66.7
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
...+++|++|.|+|+++.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. ++||+|
T Consensus 613 ~~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 613 TAEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred hcccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 3467999999999999999999999986 79999999999999999999999999999999999996 788764
No 221
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.39 E-value=8.7e-06 Score=99.55 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1673 ~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
..|++.+..+|++..+|+.|+.++............ .... ..+.-..+|+|
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~---------------------------~~~a--~~E~klsiler 56 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKA---------------------------ERRA--LAERKLSILER 56 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchh---------------------------hHHH--HHHHHHHHHHH
Confidence 467889999999999999999998655431111000 0000 11223334444
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCC-
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRH- 1826 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~- 1826 (1935)
||+.+|.. .+++.|+.++.+.-..++..+.+++++..++++..+|..|+.+.... .+...+.+|.++|..+...
T Consensus 57 AL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~ 136 (321)
T PF08424_consen 57 ALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR 136 (321)
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh
Confidence 44444432 44444444444444444445555555555555666666666655553 4556666666665544221
Q ss_pred ---------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1827 ---------------KHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1827 ---------------~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
..+.++..++.|+.+.|..|+|..+++-++..+
T Consensus 137 ~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 137 SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 125788889999999999999999999999864
No 222
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.39 E-value=3e-05 Score=98.06 Aligned_cols=219 Identities=17% Similarity=0.196 Sum_probs=170.6
Q ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---------------hhhH-------HHHH
Q 000173 1672 PDEFERLVRSSP-NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---------------ENEK-------LNIW 1728 (1935)
Q Consensus 1672 ~~~ferll~~~P-~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e---------------e~Ek-------l~lW 1728 (1935)
-+...++|..+| ++...|.-++...-.++++..|..+-+-|+...+.+. -.|. +.+|
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW 577 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 334456666644 7899999999999999999999999999998665421 1111 2445
Q ss_pred HHHHHHHHHcCCC--------------CHHHHHHHHHHHHhc--------C-----C--------C------HHHHHHHH
Q 000173 1729 VAYFNLENEYGNP--------------PEEAVVKVFQRALQY--------C-----D--------P------KKVHLALL 1767 (1935)
Q Consensus 1729 ~ayl~le~~~g~~--------------~~e~a~~vferAl~~--------~-----~--------~------~~v~~~l~ 1767 (1935)
-+.-.++...++. +...+...+.++... + | . ..+|...+
T Consensus 578 e~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa 657 (799)
T KOG4162|consen 578 EAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAA 657 (799)
T ss_pred HhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHH
Confidence 5222221111100 112223333333321 1 1 1 27899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
..+...+..++|..++.++-+.++-+..+|+..+..+... +.++|.+.|..|+..+|.+ +......|.++.+.|+.-
T Consensus 658 ~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 658 DLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhCCcc
Confidence 9999999999999999999999999999999999999999 9999999999999999987 699999999999999765
Q ss_pred HHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1847 RGRS--MFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1847 ~Ar~--ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
-|.. ++..+++.+|.+.++|+.++.+..+.|+.++|-..|.-|+.+
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5555 999999999999999999999999999999999999999984
No 223
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00014 Score=85.59 Aligned_cols=249 Identities=11% Similarity=0.045 Sum_probs=185.4
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--------------hhhHHHHHHHHH-HHH---
Q 000173 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--------------ENEKLNIWVAYF-NLE--- 1735 (1935)
Q Consensus 1674 ~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--------------e~Ekl~lW~ayl-~le--- 1735 (1935)
.|-.....-|+|..+...++..+...|+.+.|...|+++....|+.- +.|+.+-.+.|+ +.-
T Consensus 220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT 299 (564)
T ss_pred HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence 44444556799999999999999999999999999999996555421 111111111111 100
Q ss_pred ---------HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1736 ---------NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1736 ---------~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
..+.....++|....+++++.++.. ..++.-++++.+.++.++|.=.|..+...-|-....|..+...|+
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 0000002356666667777776665 788888888889999999999999888877778888888888888
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA-ILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a-~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
.. .+.+|..+-..+++.+|.+. +....++ ..++ .----|+|.+.++++|+..|...-.-...+.++...|..+.+
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA--~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSA--RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcch--hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchH
Confidence 88 88888888888888888774 6777775 4333 334579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..++++++. ..++. .+.....++........++..-|..|+.
T Consensus 458 i~LLe~~L~--~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 458 IKLLEKHLI--IFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHh--hcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999998 55554 3677777777767667777777766654
No 224
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.35 E-value=0.00058 Score=81.30 Aligned_cols=251 Identities=15% Similarity=0.117 Sum_probs=171.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++.+++.....+.-...+.....++--+...-+.|++++|=....+|-+..+..+ +.+-+....+....+++ .
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~----l~v~ltrarlll~~~d~--~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT----LAVELTRARLLLNRRDY--P 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----HHHHHHHHHHHHhCCCc--h
Confidence 34444443333333233344455555555555677888888888888876433222 55667777777777744 8
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc---------------------------------
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--------------------------------- 1790 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--------------------------------- 1790 (1935)
.|+.-..+++...|.. .+..-...+|.+.|.+.....+..++.|.-
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 8888888888887764 444445556666666666555555544321
Q ss_pred ---------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1791 ---------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1791 ---------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
..++.+-..|+..+.+. ..++|.++.+.+++..-+. .+...+.. .+-++++.=.+..|+.++..|
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~---~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP---RLCRLIPR--LRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh---hHHHHHhh--cCCCCchHHHHHHHHHHHhCC
Confidence 24466667777777777 8888888888888765332 32222222 245677778888888899999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1861 KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1861 k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
.+..+|+.+.+++++.+.+.+|...|+.|+. ..|... -|....+...+.|+.+.+.++++.++-..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~--~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSAS--DYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 444333 35555566677999999999999998443
No 225
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.34 E-value=9.2e-07 Score=117.55 Aligned_cols=75 Identities=25% Similarity=0.428 Sum_probs=71.4
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
.+.++|+++.|.|+++++||+||++.++..||+|+|+++++++.++.+.|++||.|+|+|+++|++ +|+.||+|.
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~ 691 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKA 691 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999999987 999999985
No 226
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.33 E-value=3.2e-06 Score=94.94 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=67.6
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeC----------CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLS----------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~----------~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri 1443 (1935)
..+++|++|.|+|+++.++|+||+|+ .+++|++|++++++.+..++.+.|++||.|.|+|++++ +++
T Consensus 60 ~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i 136 (189)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPL 136 (189)
T ss_pred CCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcE
Confidence 34689999999999999999999984 46899999999999998899999999999999999998 789
Q ss_pred EEEEecC
Q 000173 1444 EVTLKTS 1450 (1935)
Q Consensus 1444 ~lSlk~~ 1450 (1935)
.||++..
T Consensus 137 ~LS~k~~ 143 (189)
T PRK09521 137 QLSTKGK 143 (189)
T ss_pred EEEEecC
Confidence 9999864
No 227
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2.9e-05 Score=94.34 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
...|+..+--+.+.++++.|+..+..+++..|+++-.|...++.+++. +..+|.+.|++++...|.. .-+|+.||+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~--~~l~~~~a~a 383 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS--PLLQLNLAQA 383 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--cHHHHHHHHH
Confidence 478888888899999999999999999999999999999999999999 9999999999999999987 5899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1839 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+++.|++.+|..++.+.+..+|.+.+.|..+++.+-.+|+..++..-+-....
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888776666555
No 228
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.29 E-value=0.00032 Score=90.14 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=54.1
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
++.+... ++++|.++.++||...|.. +++++.-|.++-..|++.+|-..++.+-..++.+--+-...+...++.|++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~--~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTL--VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH
Confidence 5544444 6666666666666666555 466666666666666666666666666666665555666666666666666
Q ss_pred HHHHHHHHHHHh
Q 000173 1880 DLIRGLFERAIS 1891 (1935)
Q Consensus 1880 e~ar~lferal~ 1891 (1935)
+.|+.++...+.
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 666665555544
No 229
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=3e-05 Score=103.26 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 000173 1722 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR 1800 (1935)
Q Consensus 1722 ~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~ 1800 (1935)
......|.++++++...++ .++|.++.+.+++.+|.. ..|+.++.+|.+.+++.+|.-+ +++..++...+
T Consensus 28 p~n~~a~~~Li~~~~~~~~--~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~----- 98 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENL--TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK----- 98 (906)
T ss_pred cchHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc-----
Confidence 3456799999999989994 599999999999999986 8888888899888888777766 66666654441
Q ss_pred HHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1801 VQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1801 ~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
. .+.+.|..++...+.++ .++..+|.+|-++|+.++|..+|+++|+.+|++..+.+.||.++... +.+
T Consensus 99 --------~-~~ve~~~~~i~~~~~~k--~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 99 --------W-AIVEHICDKILLYGENK--LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --------h-hHHHHHHHHHHhhhhhh--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 2 11122222222222222 24444444444455555555555555555555555555555444444 455
Q ss_pred HHHHHHHHHHh
Q 000173 1881 LIRGLFERAIS 1891 (1935)
Q Consensus 1881 ~ar~lferal~ 1891 (1935)
+|+.++.+|+.
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 230
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1.2e-05 Score=97.01 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 000173 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEG 1854 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~ife~ 1854 (1935)
.....+|.+++.+|+....+|..|+.|..+. .+.+...+|..||+.+|.+ +.+|...|.++|.-+. .+.||++|.+
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHH
Confidence 4567889999999999999999999998888 7999999999999999998 5999999999998775 9999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHc
Q 000173 1855 ILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1855 al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+|+.+|.+..+|..|.+||...
T Consensus 166 gLR~npdsp~Lw~eyfrmEL~~ 187 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYFRMELMY 187 (568)
T ss_pred HhhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999864
No 231
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.27 E-value=2.4e-06 Score=77.59 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=56.2
Q ss_pred ccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCCc---------cccCCCeE-EEEEEEeeccccEEEEeeh
Q 000173 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 939 (1935)
Q Consensus 875 G~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~~---------~~~~G~~v-~~~vl~~~~~~~~v~ls~k 939 (1935)
|++|+|+|.++++++++|++.+. ++.|++|..||||+ ++++||++ .++|+ +...+.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999986 89999999999993 79999999 67777 888899988865
No 232
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.24 E-value=0.00036 Score=87.04 Aligned_cols=131 Identities=9% Similarity=0.082 Sum_probs=96.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
-.+|+..|..+|...|+|..+|..++..+.|.++++-....-.+.++..|.+ ..-|+.++--+...|++ ..|.
T Consensus 91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-----ra~w~~~Avs~~L~g~y--~~A~ 163 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-----RASWIGFAVAQHLLGEY--KMAL 163 (700)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHH--HHHH
Confidence 3467889999999999999999999999999999999988888888766642 24788888777777744 5555
Q ss_pred HHHHHHHhcC---CCH----------------------------------------HHHHHHHHHHHHcCChHHHHHHHH
Q 000173 1748 KVFQRALQYC---DPK----------------------------------------KVHLALLGLYERTEQNKLADELLY 1784 (1935)
Q Consensus 1748 ~vferAl~~~---~~~----------------------------------------~v~~~l~~i~~~~~~~~~A~el~~ 1784 (1935)
.+.+...+.+ ++. ..-...+.++.+.+++++|..+|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 5555444433 221 111222337788899999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHH
Q 000173 1785 KMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1785 ~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
+++.++|++..-+..|-..+.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHH
Confidence 999999988777766665553
No 233
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.20 E-value=7.4e-06 Score=94.88 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=69.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc----cCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~----~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
-.++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .++...|++||.|+|+|++++++ +++.||+|.
T Consensus 60 ~P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~-~~~~LS~k~ 137 (235)
T PRK04163 60 IPKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRT-RDVVLTLKG 137 (235)
T ss_pred cCCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCC-CcEEEEEcC
Confidence 35899999999999999999999975 6899999999999877 67888999999999999999854 459999998
Q ss_pred cccCC
Q 000173 1541 SYFKN 1545 (1935)
Q Consensus 1541 ~~~~~ 1545 (1935)
.+++.
T Consensus 138 ~~lG~ 142 (235)
T PRK04163 138 KGLGK 142 (235)
T ss_pred CCCCc
Confidence 76643
No 234
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.00016 Score=81.89 Aligned_cols=156 Identities=12% Similarity=0.041 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1729 VAYFNLENEYGNPPEEAVVKVFQR-ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1729 ~ayl~le~~~g~~~~e~a~~vfer-Al~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~ 1807 (1935)
..+...+...|. .+....+... ++.+.....+...++....+.|++..|...|.++...-|++...|..++-.|.+.
T Consensus 70 ~~~a~a~~~~G~--a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGD--ADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhccc--ccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 555566666663 2334444444 4444444577777888888999999999999999999899999999999999999
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1808 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
+++.|+..|.+|++..|... .+..++|.+++-.|+++.|++++..+...-+.+..+-..++......|+++.|+++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEP--SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCc--hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999999998884 889999999999999999999999998888888889999999999999999998877
Q ss_pred HH
Q 000173 1887 ER 1888 (1935)
Q Consensus 1887 er 1888 (1935)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 65
No 235
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.17 E-value=2.5e-06 Score=107.16 Aligned_cols=107 Identities=20% Similarity=0.259 Sum_probs=84.0
Q ss_pred CCCCCCEEEEEEEEEeCC-eEEEEEecccccchh-----hHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecC
Q 000173 542 KFKVGAELVFRVLGVKSK-RITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~~~-~i~ltlK~~l~~~~~-----~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 615 (1935)
.+++|+.+++.|...+-+ ....+.|+.+..... .++..|.+ +.|+++.|+|.++.++|+||++ +++.||+|.
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~-~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKD-RVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 489999999998877433 334444444444332 22333422 3899999999999999999999 789999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEEEee
Q 000173 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 656 (1935)
Q Consensus 616 se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS~k~ 656 (1935)
++++ |.+.|++|+.++|.|++++++++ .+.||...
T Consensus 164 sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 164 KEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9995 66789999999999999999877 99999864
No 236
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.14 E-value=3.8e-06 Score=111.49 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.1
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEE
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~L 828 (1935)
...++|+++.|.|++|.++|+||++++++.||+|+|++++.++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 34678999999999999999999999999999999999999999999999999999999999997 677754
No 237
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.13 E-value=0.00089 Score=79.79 Aligned_cols=226 Identities=16% Similarity=0.179 Sum_probs=169.1
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHH--HHHHH
Q 000173 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLN--IWVAY 1731 (1935)
Q Consensus 1655 ~~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~--lW~ay 1731 (1935)
+++..+.-+...+.|.++.-.+.++...|.+...-.-..++|...|++.....+....-+.--. .+|..++. .|...
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 5666666666677999999999999999999999999999999999999999888776664332 24445543 33433
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1732 FNLENEYGNPPEEAVVKVFQRALQYCDP-----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1732 l~le~~~g~~~~e~a~~vferAl~~~~~-----~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
++-...-+ ..+... ...+..|. -.+-..++.-+.+.+.+++|.++.+.++++.-+.. .+.++.++.-
T Consensus 236 L~q~~~~~--~~~gL~----~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~ 307 (400)
T COG3071 236 LQQARDDN--GSEGLK----TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRP 307 (400)
T ss_pred HHHHhccc--cchHHH----HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCC
Confidence 33211111 112222 22233332 27788888999999999999999999998763332 2222221111
Q ss_pred cCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1807 QQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1807 ~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
.++..-.+..+..++..|... .+++.+|+++++++.+.+|...|+.++..-|.. .-|...++.+.+.|+...|..++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHH
Confidence 177888889999999999884 899999999999999999999999999887764 55777889999999999999999
Q ss_pred HHHHh
Q 000173 1887 ERAIS 1891 (1935)
Q Consensus 1887 eral~ 1891 (1935)
+.++.
T Consensus 385 ~e~L~ 389 (400)
T COG3071 385 REALL 389 (400)
T ss_pred HHHHH
Confidence 99986
No 238
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.13 E-value=0.0004 Score=89.25 Aligned_cols=224 Identities=13% Similarity=0.134 Sum_probs=154.7
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhccccchhhH----------H-HHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-----ADVEKARSIAERALQTINIREENEK----------L-NIWV 1729 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~-----~e~dkAr~v~erAl~~i~~~ee~Ek----------l-~lW~ 1729 (1935)
++..+|...|..+|..||+|...+..|....... ...+...++|+......|...-..+ + ..-.
T Consensus 52 g~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~ 131 (517)
T PF12569_consen 52 GRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLD 131 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHH
Confidence 5577899999999999999999998888887222 2567777888876554432211111 1 2233
Q ss_pred HHHHHHHHcCCC-----------CHH---HHHHHHHHHH---hcC-------------CCHHHH--HHHHHHHHHcCChH
Q 000173 1730 AYFNLENEYGNP-----------PEE---AVVKVFQRAL---QYC-------------DPKKVH--LALLGLYERTEQNK 1777 (1935)
Q Consensus 1730 ayl~le~~~g~~-----------~~e---~a~~vferAl---~~~-------------~~~~v~--~~l~~i~~~~~~~~ 1777 (1935)
.|+.-..+-|-| +.+ ....+++..+ +.+ |..-+| +-+++.|...|+++
T Consensus 132 ~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~ 211 (517)
T PF12569_consen 132 EYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE 211 (517)
T ss_pred HHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH
Confidence 344333333321 112 2222222222 111 112456 55688999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1778 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1778 ~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
+|.+..++++..-|..+++++.-|.++... ++.+|.+.++.|-+..+.+. -+-.+.+..+++.|+.++|..++....
T Consensus 212 ~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 212 KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999 99999999999999988775 677888999999999999999998877
Q ss_pred HhC--CC-CHH----HHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 000173 1857 SEY--PK-RTD----LWSIYLDQEI--RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1857 ~~~--Pk-~~d----lw~~ya~~e~--k~g~~e~ar~lferal~ 1891 (1935)
+.. |. +.. +|+..-.-+. +.|++..|...|..+..
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654 22 111 4655544442 56777777666665443
No 239
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=5.2e-05 Score=87.99 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQ 1817 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ 1817 (1935)
.+....-.+.-++.+|.+ +-|..|+.+|.+.+++..|...|.++.+.-++++.+|..|++.++.+ ...+++.+|.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 567777888889999987 99999999999999999999999999999999999999999999988 6788999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1818 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1818 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++++..|.+ +...+.+|.-+|..|++.+|...++..|...|.+
T Consensus 218 ~al~~D~~~--iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPAN--IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999998877 7899999999999999999999999999999886
No 240
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00021 Score=87.05 Aligned_cols=129 Identities=9% Similarity=0.058 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1869 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y 1869 (1935)
+.....|+-.+.-++.. +++.|+..+...++..|++ +-+|...++++++.+++++|.+.|++++..+|...-+|..|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~ 380 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL 380 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence 57788999988888888 9999999999999999988 58999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1870 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924 (1935)
Q Consensus 1870 a~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~ 1924 (1935)
++.+++.|++.+|..++.+.+. ..|..+ .+|.....-+..+|+..++...+.
T Consensus 381 a~all~~g~~~eai~~L~~~~~--~~p~dp-~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLF--NDPEDP-NGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhh--cCCCCc-hHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999999999999998 666777 689888888888888766655443
No 241
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.11 E-value=2.7e-05 Score=75.26 Aligned_cols=96 Identities=19% Similarity=0.137 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|+.++.++...+++++|...|+++++..+....+|+.++..+... ++++|.+.|++++...|... .+|..+|.++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555 55555555555555554442 455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 000173 1842 NGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~P 1860 (1935)
.|++++|...|++++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 5555555555555555444
No 242
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.11 E-value=9.2e-06 Score=81.33 Aligned_cols=75 Identities=20% Similarity=0.434 Sum_probs=64.8
Q ss_pred CEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCC-----------ccccCCCCcEEEEEEEEEeCCC-----CEE
Q 000173 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-----------PEKEFPIGKLVAGRVLSVEPLS-----KRV 1443 (1935)
Q Consensus 1380 ~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~-----------~~~~f~~G~~V~~kVl~vd~~~-----~ri 1443 (1935)
+++.|.|+++.++|+||+|. .++|++|++++++++... +...|++||.|+++|.++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999998 599999999999876532 4578999999999999999764 589
Q ss_pred EEEEecCccccc
Q 000173 1444 EVTLKTSDSRTA 1455 (1935)
Q Consensus 1444 ~lSlk~~~~~~~ 1455 (1935)
.||++.....++
T Consensus 80 ~ls~k~~~~g~~ 91 (99)
T cd04460 80 GLTMRQPGLGKL 91 (99)
T ss_pred EEEEecCCCCcH
Confidence 999999877654
No 243
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.10 E-value=4.5e-05 Score=94.77 Aligned_cols=106 Identities=14% Similarity=0.020 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
...++.+...+++++|.++|.+++...|.+..+|+.++..++.. ++++|...|++|+...|.+ ..+|..+|.+++..
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHh
Confidence 34456667889999999999999999999999999999999999 9999999999999999876 58899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
|++++|...|++++...|.+..++.....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999998776433333
No 244
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.09 E-value=2.7e-05 Score=90.31 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCC----CCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEee
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG----CEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~----~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~ 656 (1935)
++|+++.|+|+++.++|++|++..+..|++|.+++++.++ .++.+.|++|+.|.|+|+++++++ .+.||++.
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~-~~~LS~k~ 137 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTR-DVVLTLKG 137 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCCC-cEEEEEcC
Confidence 5799999999999999999999889999999999987654 577788999999999999999764 49999975
No 245
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.08 E-value=0.00023 Score=88.74 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=160.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+|-.....+++.++.|..-|.-|+-.+-...++++|...|.+|+.. ...+ +.+|..+.-|+.+++ +.+-..
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~-~~dN----~qilrDlslLQ~QmR--d~~~~~ 129 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI-EKDN----LQILRDLSLLQIQMR--DYEGYL 129 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHHHHH--hhhhHH
Confidence 334444555778889999999999999999999999999999999964 3333 579999999999999 448889
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
..-.+.++..|.. .-|+.++-.+.-.+.+..|.++.+...+.. +.+...+-..-.++.+. ...++- .++.+++.+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG-SLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHH
Confidence 9999999999986 889999999999999999999988877655 34555555444444444 222221 145555544
Q ss_pred CCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Q 000173 1824 PRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR-LGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1824 p~~~-----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k-~g~~e~ar~lferal~ 1891 (1935)
-..+ ...+...-|.++++.+++++|..+|..++..+|++.+-+..|...+.+ .+..+....+|.+.-+
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 3221 135566667788999999999999999999999998877666666643 3344444477776554
No 246
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.07 E-value=1.7e-05 Score=73.23 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=54.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCC--CEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1446 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~--~ri~lS 1446 (1935)
+.|++|+|+|.++.++|+||+++. .+|++|.++++ |.+.|++|+.+++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 469999999999999999999985 99999999987 3457899999999999998654 356666
No 247
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00015 Score=85.97 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=175.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHH---HHHcCCCC
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNL---ENEYGNPP 1742 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--e~Ekl~lW~ayl~l---e~~~g~~~ 1742 (1935)
--++...|..++...|+++..|-+-++.++..++++.|.--++..++.-+... ..+--....+...+ +..+.+..
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~ 144 (486)
T KOG0550|consen 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQ 144 (486)
T ss_pred HHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhh
Confidence 34566788899999999999999999999999999999999988886433211 00000112222221 11111110
Q ss_pred HHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
.-.+...|.+.-...+.. +.-+.-+.++...++++.|...--..++..+.+....+..+.++... +.+.|..
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~ 224 (486)
T KOG0550|consen 145 AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAIN 224 (486)
T ss_pred hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHH
Confidence 011111122211222211 22233345778889999999999999988888888888888888878 9999999
Q ss_pred HHHHHHHhCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHH
Q 000173 1815 VVQRALLSLPRHKH----------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1815 ll~ralk~~p~~~~----------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~----dlw~~ya~~e~k~g~~e 1880 (1935)
.|+++|...|.+.. .+.|..-|.-.|++|++..|...|-.+|.++|.+. .++...+...+++|+..
T Consensus 225 hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 225 HFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred HHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch
Confidence 99999998887533 57888888899999999999999999999999864 46777788888999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..--+.|+. +.+.-.+.+..+ ..-..-.++++.+.+-|++|++.
T Consensus 305 eaisdc~~Al~--iD~syikall~r-a~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 305 EAISDCNEALK--IDSSYIKALLRR-ANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhh--cCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 666544322211 11222234455666666666553
No 248
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.06 E-value=8.4e-05 Score=95.69 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|.++..+ .. ..+.+...|-||++..++. ..|..|+.+|....+...|...|.++....+.....|-..+..+
T Consensus 462 ~~w~a~~~~---rK--~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 462 EFWVALGCM---RK--NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHh---hh--hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 355555443 22 2377889999999999987 99999999999999999999999999999999999999999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
.+. +.+.|..+.-++-+..|......-|...+-+|...++.-.|..-|+.+++.+|++...|..++..|-..|.+..|.
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 999 9999999988888887776556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 000173 1884 GLFERAISLSLPPKKMKFLFKKYL--EYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1884 ~lferal~~~~~pk~~k~l~~~yl--~~E~~~G~~e~a~~v~~rA 1926 (1935)
..|.+|.. +.|.. .|-+|- .+|...|.++.+-..+...
T Consensus 617 KvF~kAs~--LrP~s---~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 617 KVFTKASL--LRPLS---KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HhhhhhHh--cCcHh---HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999998 76643 333333 3567778777766555443
No 249
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.05 E-value=1.7e-05 Score=73.17 Aligned_cols=63 Identities=19% Similarity=0.411 Sum_probs=54.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEe
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 829 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~--~rl~LS 829 (1935)
+.|+.+.|.|.+++++|+||.+. +..||+|.++++. .+.|++|+.|++.|++++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 36999999999999999999995 5999999999963 457899999999999999765 357776
No 250
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=8.7e-05 Score=76.53 Aligned_cols=103 Identities=10% Similarity=0.105 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a 1836 (1935)
+++..+..+.+.+++++|.+.|.+++..+|++ ...++.++..++.. +++.|..+|++++...|.+. ...+|...|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45555566666666666666666666655443 44556666666666 66666666666666655532 134566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
.++.+.|++++|...|++++..+|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666666666666666666665543
No 251
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.0004 Score=78.84 Aligned_cols=171 Identities=11% Similarity=0.027 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...+-+....+|. ..+ ..+...|...|+-+.+........-.++....+...++...++. ++..|...|.++....|
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p 131 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP 131 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC
Confidence 3334444444454 366 77888888888888888888888777788888888899999999 99999999999999988
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
.+ ..+|...|..|.+.|+.+.||.-|.++++..|....+.++++..+.-.|+.+.|+.++.++.. .++.+. .+-.
T Consensus 132 ~d--~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~-~v~~ 206 (257)
T COG5010 132 TD--WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADS-RVRQ 206 (257)
T ss_pred CC--hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCch-HHHH
Confidence 88 599999999999999999999999999999999999999999999999999999999999997 554443 2333
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 000173 1905 KYLEYEKSVGEEERIEYVK 1923 (1935)
Q Consensus 1905 ~yl~~E~~~G~~e~a~~v~ 1923 (1935)
...-.-..+|+...|+++-
T Consensus 207 NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 207 NLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHhhcCChHHHHhhc
Confidence 3333445567776666543
No 252
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=98.04 E-value=1.5e-05 Score=88.68 Aligned_cols=78 Identities=26% Similarity=0.559 Sum_probs=66.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEe-----c
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----K 1529 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id-----~ 1529 (1935)
..+|+++.|+|++++++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|+++| +
T Consensus 79 p~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~ 156 (179)
T TIGR00448 79 PELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRP 156 (179)
T ss_pred ccCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCC
Confidence 457999999999999999999995 49999999999866542 23468999999999999998 6
Q ss_pred CCCeeEEeccccccCC
Q 000173 1530 EKRRISLGMKSSYFKN 1545 (1935)
Q Consensus 1530 ~~~ri~lslK~~~~~~ 1545 (1935)
+..+|.+|+|+.|.+.
T Consensus 157 ~~~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 157 EGSKIGLTMRQPLLGK 172 (179)
T ss_pred CcceEEEEeccCcCCc
Confidence 7889999999988754
No 253
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.04 E-value=0.0002 Score=87.76 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc-C------------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000173 1782 LLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------------QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1782 l~~~~~k~~~~~~~vw~~~~~~l~~~-~------------~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
-|++.++..|.+.+.|+.|+.+.... . .+....+|++||+.+|.+ ..++..|.....+.-+.+..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHH
Confidence 35666666677777777777665544 2 456678999999999866 58999999988888899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhc-----CCC----------chhHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIR---LGDVDLIRGLFERAISL-----SLP----------PKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k---~g~~e~ar~lferal~~-----~~~----------pk~~k~l~~~yl~~E 1910 (1935)
...+++++..+|.+..+|..|+++... .-.++.++.+|.+++.. .-. ...+-.+|.++..|+
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999886 34688999999999861 000 123446799999999
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle~v 1930 (1935)
.+.|..+.|-.+++-.+++-
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 99999999999999888874
No 254
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=6.7e-06 Score=103.47 Aligned_cols=104 Identities=19% Similarity=0.372 Sum_probs=82.7
Q ss_pred EEEeecCCCeEEEeccc-hhcchhc-cCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCccc
Q 000173 727 LLVLDNESSNLLLSAKY-SLINSAQ-QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSK 804 (1935)
Q Consensus 727 vl~~d~~~~~i~ls~K~-~l~~~~~-~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~ 804 (1935)
-+.++ +.+++.++... .-.+.+. .+..-..++.+|.++.|.|++|.+||+||+|.+|=.||+|+|++++.++...++
T Consensus 584 ~Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 584 KIDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccc
Confidence 34555 56666555433 2222221 222233567899999999999999999999999999999999999999999999
Q ss_pred CccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 805 TYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 805 ~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
.+++||.|.|+|+.+|+ .+|+.||++.
T Consensus 663 vlk~Gd~v~Vkv~~iD~-~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEIDK-QGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeecc-cCCccceehh
Confidence 99999999999999995 6999999874
No 255
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=98.02 E-value=1.3e-05 Score=85.75 Aligned_cols=78 Identities=29% Similarity=0.574 Sum_probs=64.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCC---
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEK--- 1531 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~--- 1531 (1935)
.-.|++|.|.|.++.+||+||.|.+ .+||+|+|++.|+++. .-...|++||.|+++|+.+....
T Consensus 79 P~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~ 156 (183)
T COG1095 79 PFRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRP 156 (183)
T ss_pred eccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCcc
Confidence 4568999999999999999999975 8999999999988441 12348999999999999987655
Q ss_pred --CeeEEeccccccCC
Q 000173 1532 --RRISLGMKSSYFKN 1545 (1935)
Q Consensus 1532 --~ri~lslK~~~~~~ 1545 (1935)
-+|.++||+.+.+.
T Consensus 157 ~~~~I~lTmrq~~LGk 172 (183)
T COG1095 157 RESKIGLTMRQPGLGK 172 (183)
T ss_pred ccceEEEEeccccCCc
Confidence 57888998876643
No 256
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=97.99 E-value=6.9e-06 Score=103.27 Aligned_cols=118 Identities=17% Similarity=0.263 Sum_probs=89.2
Q ss_pred ceEeeccccchHHHHhhhccccCCCEEEEEEEEEEecCCeEEEEechhhccc-----cccccccCC--CCCEEEEEEEEE
Q 000173 437 PAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEG-----LVFTHSDVK--PGMVVKGKVIAV 509 (1935)
Q Consensus 437 ~gfv~~s~~~~~~~~~~~~~~~vG~~~~~rV~~~~~~d~~~~~s~k~~~~~~-----~~~~~~~l~--~G~~v~g~V~~v 509 (1935)
.++++.++.. .....+++|+.+.+.|...+ .++....+.++..+.. +...++.++ .|++|+|+|.++
T Consensus 72 ~~eI~L~eAk-----~~~~~~~vGD~ie~~I~~~~-fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri 145 (470)
T PRK09202 72 TKEISLEEAR-----KIDPDAEVGDYIEEEIESVD-FGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRV 145 (470)
T ss_pred cceeeHHHHh-----hhCccccCCCeEEEEEcccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEE
Confidence 3667665442 12235899999999998766 4444444444433321 234567776 899999999999
Q ss_pred ecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE--eCC--eEEEEEec
Q 000173 510 DSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSK--RITVTHKK 567 (1935)
Q Consensus 510 ~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v--~~~--~i~ltlK~ 567 (1935)
+++|++|+++ +++||+|.++++ |...|++|+.|+|.|+.+ .++ +|.||++.
T Consensus 146 ~~~giiVDLg-gvea~LP~sE~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 146 ERGNIIVDLG-RAEAILPRKEQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred ecCCEEEEEC-CeEEEecHHHcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 9999999995 899999998874 778999999999999999 334 89999874
No 257
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.98 E-value=6.3e-05 Score=72.62 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
+|+.++..+... ++++|...|+++++..|.. ..+|..+|.++...++++.|...|++++...|.+...|..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN--ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 577888888888 9999999999999888766 3788889999999999999999999999999998889999999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000173 1875 RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~ 1891 (1935)
..|+.+.|...|++++.
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999999886
No 258
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0011 Score=77.76 Aligned_cols=184 Identities=11% Similarity=-0.005 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1760 (1935)
+...|..-+.-.++.|++++|.+.|++++...|.+...+...+|++++.+ +.++ .+.|...|++.++..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy--~~~~--y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY--KNAD--LPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH--hcCC--HHHHHHHHHHHHHhCcCCCchH
Confidence 45566666777788899999999999999888877655555677776665 4563 488999999999998864
Q ss_pred HHHHHHHHHHHHcC---------------C---hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Q 000173 1761 KVHLALLGLYERTE---------------Q---NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~---------------~---~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~ 1822 (1935)
.+++.++..+...+ + ..+|.+.|++.+++||++.- ..+|+..+..+-..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh-------------HHHHHHHHHHHHHH
Confidence 55555554432221 1 34677899999999998755 34444333333222
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+- .--+..|.++++.|.+.-|..-|+.++..+|... +.....+..+...|..+.|........
T Consensus 174 la-----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LA-----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HH-----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 21 1223678899999999999999999999999854 456666777888999999988766543
No 259
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.97 E-value=0.00022 Score=76.01 Aligned_cols=97 Identities=9% Similarity=-0.111 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
+..+.++..+.+.|++++|..+|+.++...+.+..-|+.++..+... ++++|...|.+|+...|.+ +..+...|+.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd--p~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA--PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--chHHHHHHHHH
Confidence 55667777888999999999999999999999999999999999988 9999999999999999876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 000173 1840 FKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~ 1859 (1935)
+..|+.+.|+..|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 260
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.97 E-value=1.6e-05 Score=107.42 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=65.8
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1531 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~ 1531 (1935)
+..-++|+++.|.|++|++||+||+|.+.+++||+|+|++++++. .+....|++||.|+|+|.++|.++
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 445578999999999999999999998656999999999986643 223467999999999999999999
Q ss_pred CeeEEec
Q 000173 1532 RRISLGM 1538 (1935)
Q Consensus 1532 ~ri~lsl 1538 (1935)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
No 261
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00021 Score=77.09 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=85.1
Q ss_pred HcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e 1846 (1935)
..++...+.+.++.+.+.++.+ ...++.++..++.. ++++|...|+.++...|... ...+++.+|.+++..|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777777888888888766 55667777777777 88888888888887664431 1246777788888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1847 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+|...++.. ...+-....|...++++.+.|+.+.|+..|++|+
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888662 3333345567777888888888888888887764
No 262
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0015 Score=80.48 Aligned_cols=194 Identities=12% Similarity=0.050 Sum_probs=105.3
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHH-HHHHHHH---HHHHcCCCCH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLN-IWVAYFN---LENEYGNPPE 1743 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~-lW~ayl~---le~~~g~~~~ 1743 (1935)
.+.+...|..++..+ .+.....+.++.|+..+.++..+...+.|++.-. +.-+..+ |-.++.. .+...+ ..
T Consensus 240 f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~--~~ 314 (539)
T KOG0548|consen 240 FETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE--DY 314 (539)
T ss_pred HHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH--hH
Confidence 667788899999888 8888899999999999999999999888886421 1111111 1122222 222334 34
Q ss_pred HHHHHHHHHHHhcCCCHHH-------------HHHH--------------HHHHHHcCChHHHHHHHHHHHHhcCCCHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKV-------------HLAL--------------LGLYERTEQNKLADELLYKMIKKFKHSCKV 1796 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v-------------~~~l--------------~~i~~~~~~~~~A~el~~~~~k~~~~~~~v 1796 (1935)
+.+...|++++...-..++ +..+ ++-+-+.++|..|...|.+|+++.|++..+
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 7788888888755432111 1110 112233444444444444444444444444
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
|.+.+.+|... .+..|.+-.+.+++..|.. +..|..-|..++...+++.|...|+.+++.+|++..+.-.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~--~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNF--IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHH
Confidence 44444444444 4444444444444444444 3444444444444444444444455544444444444333
No 263
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00011 Score=84.76 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=106.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
+=+.+.++|++|...|.+|++..|.++-.|.+.+..|.+. .++.|.+-.+.||..+|.+ .++|..++..++..|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y--skay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY--SKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--HHHHHHHHHHHHccCcHH
Confidence 3456778899999999999998899999999999999998 9999999999999998766 589999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCchhH
Q 000173 1847 RGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD---LIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e---~ar~lferal~~~~~pk~~ 1899 (1935)
+|..-|.++|..+|.+...|..+-..+.+.+... .+..-|+-+......|+-+
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999999999888888777777766655 4555666655544444433
No 264
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.91 E-value=0.00084 Score=71.62 Aligned_cols=141 Identities=14% Similarity=0.077 Sum_probs=122.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1750 FQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIK-KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1750 ferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k-~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..+.+...|...-.+.+++.....|++.+|...|++++. .|...+.+.+.+++..+.. ++..|...++......|...
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 334444456667888999999999999999999999886 5789999999999999999 99999999999999999887
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHh
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL----IRGLFERAIS 1891 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~----ar~lferal~ 1891 (1935)
.+.-...||..+-..|.++.|++-||.++..+|.- .....|+.|+.++|..++ .+.+++++..
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999999999984 667789999999996554 5567777665
No 265
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00018 Score=74.16 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSI 1868 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ 1868 (1935)
++.|+..+..++.+ ++++|.+.|.+++...|.+.. ..++..+|..+++.|++++|..+|+.++..+|.. ..+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 46788899999999 999999999999999887532 4688999999999999999999999999999885 568999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
++.++.+.|+.+.|...|++++. ..|...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 99999999999999999999998 555544
No 266
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.90 E-value=0.002 Score=91.27 Aligned_cols=264 Identities=11% Similarity=0.018 Sum_probs=176.8
Q ss_pred ccCCCCcHHHHHHHHHcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHHc
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSS-----FVWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENEY 1738 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~-----~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~-Ekl~lW~ayl~le~~~ 1738 (1935)
.++..++...+++++...|... ..+..++..+...|+++.|+..+++++......... .....+..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4556777888888876444322 234555666778999999999999999643321110 1122334445566778
Q ss_pred CCCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 000173 1739 GNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQRL 1804 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~---------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-----~~~vw~~~~~~l 1804 (1935)
| +.+.|...+++++..... ..++..++.++...|++++|.+.+.+++..... ....+..++..+
T Consensus 545 G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 545 G--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred C--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 8 569999999999876321 134556677888889999999999998875421 233444566677
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCC-hHHH--HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHK-HIKF--ISQ--TAILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEI 1874 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~-~~~~--~~~--~a~le~~~g~~e~Ar~ife~al~~~Pk~~d----lw~~ya~~e~ 1874 (1935)
... +++.|...+.+++...+... +... +.. .+..+...|+.+.|..++.......+.... .+..++..+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 777 99999999999977543321 1111 111 123344578999999998887653322222 2567788888
Q ss_pred HcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1875 RLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..|+.++|..+|++++.. ......+ .....+.......|+.+.|...+.+|++..+
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a-~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLN-RNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999872 1122222 2344455667789999999999999998764
No 267
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00017 Score=89.62 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=89.3
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k 1875 (1935)
+..-+..++.. ++++|.++|.+|+...|.+ ..+|..+|.+++..|++++|...|++++..+|.+..+|+.++.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~--~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN--AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 33445666677 9999999999999999987 58999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.|+++.|...|++++. +.|...
T Consensus 83 lg~~~eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 83 LEEYQTAKAALEKGAS--LAPGDS 104 (356)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999 555544
No 268
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.0011 Score=75.83 Aligned_cols=176 Identities=15% Similarity=0.147 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----H
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----K 1761 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~----~ 1761 (1935)
...+...+..+++.|++++|...|++.+...|.+.-.....+|+++..+ ..++ .+.|...|++.++..|.. .
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~~--y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQGD--YEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT---HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcCC--HHHHHHHHHHHHHHCCCCcchhh
Confidence 4556666777788899999999999999888877665655666665544 5663 488888889888888764 4
Q ss_pred HHHHHHHHHHH-----------cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHH
Q 000173 1762 VHLALLGLYER-----------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1762 v~~~l~~i~~~-----------~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
+++.++..+.. .....+|...|+..+++||++.- ..+|+..+..+-..+ ..
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y-------------~~~A~~~l~~l~~~l-----a~ 142 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY-------------AEEAKKRLAELRNRL-----AE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT-------------HHHHHHHHHHHHHHH-----HH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH-------------HHHHHHHHHHHHHHH-----HH
Confidence 44444443322 23345778888888888887655 344444444333322 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d---lw~~ya~~e~k~g~~e~ar 1883 (1935)
--+..|.++++.|.+..|..-|+.+++.+|.... .+...+..+.++|..+.+.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 2345688999999999999999999999999654 5677777777888777544
No 269
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.88 E-value=3.7e-05 Score=75.43 Aligned_cols=75 Identities=19% Similarity=0.366 Sum_probs=64.4
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEe-------cCceeEEeeccccCccccc--CcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIE-------NTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~-------~~~v~Gl~h~sels~~~~~--~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.++|++|-|+|+++....++|.|. +....|++|++++...+.+ ++.+.|++||.|+|+|++++ +.+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~-~~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLG-DASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcC-CCCCcEE
Confidence 489999999999999999999992 2368999999999887776 68899999999999999997 3466888
Q ss_pred ecccc
Q 000173 1537 GMKSS 1541 (1935)
Q Consensus 1537 slK~~ 1541 (1935)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 88753
No 270
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.00023 Score=88.07 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
+.|.++|++..+..|. ++..++.+|...++..+|.++++++++..|.+..++...+.|++.. +++.|..+.++|...
T Consensus 186 ~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l 263 (395)
T PF09295_consen 186 DEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL 263 (395)
T ss_pred HHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 5555555555554443 3334455555555555555555555555555555555555555555 555555555555555
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.|.. ...|..+|+.|.+.|+++.|...
T Consensus 264 sP~~--f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 264 SPSE--FETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred Cchh--HHHHHHHHHHHHhcCCHHHHHHH
Confidence 5544 25555555555555555555543
No 271
>PRK11642 exoribonuclease R; Provisional
Probab=97.86 E-value=3e-05 Score=104.42 Aligned_cols=75 Identities=31% Similarity=0.603 Sum_probs=65.2
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc--c---------CcccccCCCCEEEEEEEEEecCCCe
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~--~---------~~~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
.-++|+++.|+|++|++||+||+|.+.+++||+|++++.+++. . +....|++||.|+|+|+++|.++++
T Consensus 640 ~~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rk 719 (813)
T PRK11642 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERK 719 (813)
T ss_pred hccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCe
Confidence 3379999999999999999999998756999999999987632 1 2346799999999999999999999
Q ss_pred eEEecc
Q 000173 1534 ISLGMK 1539 (1935)
Q Consensus 1534 i~lslK 1539 (1935)
|.|++-
T Consensus 720 I~f~l~ 725 (813)
T PRK11642 720 IDFSLI 725 (813)
T ss_pred EEEEEe
Confidence 999973
No 272
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.82 E-value=0.00079 Score=87.15 Aligned_cols=182 Identities=14% Similarity=0.033 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLA 1779 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A 1779 (1935)
+...|...+-||++..++- ...|.-+..++.... +...|++.|.+|....+.. ..|.+.++.|......+.|
T Consensus 473 ~~~~al~ali~alrld~~~-----apaf~~LG~iYrd~~--Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSL-----APAFAFLGQIYRDSD--DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hHHHHHHHHHHHHhcccch-----hHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHH
Confidence 3777778888888644321 245666666666666 4577888888888888776 8888888888888888888
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1780 DELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1780 ~el~~~~~k~~~--~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
.++.-++-.+-+ ....-|...+-++++. +...|..-|+.|+...|.+ ...|..+++.|...|.+..|...|.++.
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD--~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD--YNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh--HHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 888555544432 2345577777777777 8888888888888888877 5888888888888888888888888888
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1857 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1857 ~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...|.+.-.-+.-+-++.-.|.+..+.+.++..+.
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888777777777788888888888877777665
No 273
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.80 E-value=0.00033 Score=82.79 Aligned_cols=103 Identities=12% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-~~~~~~~~~a 1836 (1935)
.|.....++...++|++|...|+..++.||++ +.+|+.++..++.. ++++|...|+++++.+|.+ ....+|...|
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 33333445566788899999999999888877 57888888888888 8889998999998888875 3357888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
..+...|+++.|+.+|+++++.+|+...
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 8888888899999999988888888754
No 274
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0011 Score=76.54 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=92.8
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
+.-+++. +|++|...|.+||+..|.+. -+|.+.|+.|.+.|.++.|.+-.+.+|+.+|.....|..+...+..+|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4456666 99999999999999999984 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1880 e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+.|...|.+||. +.|.+. .|+.=|.+
T Consensus 166 ~~A~~aykKaLe--ldP~Ne--~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNE--SYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcH--HHHHHHHH
Confidence 999999999999 888887 45554544
No 275
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.79 E-value=0.00054 Score=73.01 Aligned_cols=102 Identities=10% Similarity=-0.109 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000173 1723 EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRV 1801 (1935)
Q Consensus 1723 Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~ 1801 (1935)
+.++.-.+|.....+.| ..+.|..+|+-++.+.|.+ .-|+.|+.++...+++.+|.+.|.++....++++..+.+.+
T Consensus 33 ~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 34667888888889999 5599999999999999986 99999999999999999999999999999999999999999
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+++.. +.+.|++.|+.|+..+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999 9999999999999988444
No 276
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.75 E-value=6.1e-05 Score=100.45 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.4
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCCCe
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
.-++|+++.|+|+++++||+||+|.+.+++||+|++++.+++. ++....|++||.|+|+|.++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 4468999999999999999999998558999999999987641 22346899999999999999999999
Q ss_pred eEEec
Q 000173 1534 ISLGM 1538 (1935)
Q Consensus 1534 i~lsl 1538 (1935)
|.+++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99875
No 277
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.75 E-value=8e-05 Score=73.06 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=66.2
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--------CCCcEEEEECccCCCcccC--CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l--------~~~v~g~V~~s~lsd~~~~--~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.++|++|-|+|++++...++|++ .....|.+|++++...+.. ++.+.|++||.|.|+|++++. .+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEE
Confidence 37899999999999999999999 8888999999999988776 788999999999999999984 567999
Q ss_pred EEecC
Q 000173 1446 TLKTS 1450 (1935)
Q Consensus 1446 Slk~~ 1450 (1935)
|++..
T Consensus 83 st~~~ 87 (92)
T cd05791 83 STAEN 87 (92)
T ss_pred EecCC
Confidence 98764
No 278
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.74 E-value=8.1e-05 Score=90.18 Aligned_cols=122 Identities=19% Similarity=0.374 Sum_probs=87.1
Q ss_pred ccccccCCCeEeeEEEeecCCCeEEEeccchhcch---h--ccCCccccccCCCCEEEEEEEEEecCe-EEEEECCCeEE
Q 000173 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS---A--QQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTG 787 (1935)
Q Consensus 714 ~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~---~--~~~~~~~~~~~~G~~~~G~V~~i~~~G-~fV~f~~gl~G 787 (1935)
+...+++||.++..+..+.-++....++|+.+... . +.+...|.+ +.|+.++|+|.++.+.| +||.+ |++.|
T Consensus 80 ~d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea 157 (341)
T TIGR01953 80 IDPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEG 157 (341)
T ss_pred hccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEE
Confidence 34567899999854443333444556666655222 1 123333333 58999999999999988 69999 79999
Q ss_pred EeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEeecccccCCCCchhhHHHHHHH
Q 000173 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 788 lv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~--~rl~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
|+|++++. |.+.|++|+.++|.|++++.+. ..+.||.+. +.|+..+|..+
T Consensus 158 ~LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~-------~~~v~~Lfe~E 209 (341)
T TIGR01953 158 ILPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH-------PEFVKELLKLE 209 (341)
T ss_pred EecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc-------HHHHHHHHHHh
Confidence 99999886 4567999999999999999654 568888754 45566666643
No 279
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=97.74 E-value=0.00011 Score=81.77 Aligned_cols=76 Identities=22% Similarity=0.389 Sum_probs=64.9
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-C----------ccccCCCCcEEEEEEEEEe-----CCCC
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVE-----PLSK 1441 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-~----------~~~~f~~G~~V~~kVl~vd-----~~~~ 1441 (1935)
+|+++.|.|++++++|+||+++ .++|++|.+++.+++.. | ....|+.|+.|+++|++++ ++..
T Consensus 81 ~gEvv~G~V~~v~~~GifV~lg-~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~~ 159 (179)
T TIGR00448 81 LGEIVEGEVIEIVEFGAFVSLG-PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEGS 159 (179)
T ss_pred CCCEEEEEEEEEEeeEEEEEeC-CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCcc
Confidence 6999999999999999999997 49999999999876532 2 3467999999999999998 6678
Q ss_pred EEEEEEecCcccc
Q 000173 1442 RVEVTLKTSDSRT 1454 (1935)
Q Consensus 1442 ri~lSlk~~~~~~ 1454 (1935)
+|.+|+|+.-..+
T Consensus 160 ~I~lt~k~~~LG~ 172 (179)
T TIGR00448 160 KIGLTMRQPLLGK 172 (179)
T ss_pred eEEEEeccCcCCc
Confidence 9999999865543
No 280
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.72 E-value=0.00012 Score=82.49 Aligned_cols=78 Identities=24% Similarity=0.527 Sum_probs=65.7
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCC--
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR-- 1532 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~~-- 1532 (1935)
..+|+++.|+|+++.++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|++++.+.+
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 457999999999999999999997 49999999999876432 345678999999999999997653
Q ss_pred ---eeEEeccccccCC
Q 000173 1533 ---RISLGMKSSYFKN 1545 (1935)
Q Consensus 1533 ---ri~lslK~~~~~~ 1545 (1935)
+|.+|++..+.+.
T Consensus 157 ~~~~I~ls~~~~~LG~ 172 (187)
T PRK08563 157 RGSKIGLTMRQPGLGK 172 (187)
T ss_pred CCCEEEEEecCCCCCc
Confidence 8999999877643
No 281
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.71 E-value=0.00042 Score=76.84 Aligned_cols=116 Identities=9% Similarity=0.088 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFK--HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~--~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
+..+...+.+.++..+ .....|+.++..+... ++++|...|++|+...|... ...+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555544332 3366778888877777 88888888888887765532 235788888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHh
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEI-------RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~-------k~g~~e~ar~lferal~ 1891 (1935)
|++++...|.....|...+.++. ..|+++.|...|++++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888777877777777 55666666666666554
No 282
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.71 E-value=3e-05 Score=93.64 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=68.9
Q ss_pred ccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 756 ~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
..++..|.+++++|+++.++|+||+|+++..||+|.|+++-+.+.+|++.+.+||.|.++.+..|+..+..+++-+
T Consensus 663 ~~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ra 738 (760)
T KOG1067|consen 663 VQDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRA 738 (760)
T ss_pred ccceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhh
Confidence 3456779999999999999999999999999999999999999999999999999999999999987776666543
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0031 Score=79.72 Aligned_cols=226 Identities=20% Similarity=0.163 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000173 1684 NSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e----------~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferA 1753 (1935)
.|-..|-+++.......+ +..||.+ ||++..-... |-...-++ -|..++| -.|+|..+|++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga--RAlR~a~q~~--~e~eakvA--vLAieLg--MlEeA~~lYr~c 826 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA--RALRRAQQNG--EEDEAKVA--VLAIELG--MLEEALILYRQC 826 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH--HHHHHHHhCC--cchhhHHH--HHHHHHh--hHHHHHHHHHHH
Confidence 355789988888765544 4444432 4443221111 11223334 4455667 459999999988
Q ss_pred HhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH----------HHHh
Q 000173 1754 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR----------ALLS 1822 (1935)
Q Consensus 1754 l~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r----------alk~ 1822 (1935)
-.+ --|-.+|...|..++|.++-+.--.+ .-...|++|+.++... +.+.|.++|++ +|+-
T Consensus 827 kR~-------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e 897 (1416)
T KOG3617|consen 827 KRY-------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE 897 (1416)
T ss_pred HHH-------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh
Confidence 543 23344777788888888877654433 3567899999998888 99999998886 3554
Q ss_pred CCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHH
Q 000173 1823 LPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGIL---------------------SEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1823 ~p~--------~~~~~~~~~~a~le~~~g~~e~Ar~ife~al---------------------~~~Pk~~dlw~~ya~~e 1873 (1935)
+|. .....+|.-||+++...|+.+.|...|+.|- .....+....+.++++|
T Consensus 898 ~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 898 YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMY 977 (1416)
T ss_pred ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHh
Confidence 543 1235899999999999999999999999882 22334455788899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC-----CchhH-HHHHHHHH------------HHHHHcCCHHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFERAISLSL-----PPKKM-KFLFKKYL------------EYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~~-----~pk~~-k~l~~~yl------------~~E~~~G~~e~a~~v~~rA 1926 (1935)
...|+..+|...|-||-..+. ....+ +.+|+..+ .||+.-|+.+.|--+|.||
T Consensus 978 En~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence 999999999998888754110 01111 13454433 3455445888887777665
No 284
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0085 Score=74.52 Aligned_cols=242 Identities=12% Similarity=0.153 Sum_probs=149.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhh-HHHH----------H---------------HHHHHHH
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-KLNI----------W---------------VAYFNLE 1735 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~E-kl~l----------W---------------~ayl~le 1735 (1935)
++.+..+..-+++.+.+++++++|..+|+..++......|.+ +.|+ | +..+-.+
T Consensus 106 ~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~ 185 (652)
T KOG2376|consen 106 DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACIL 185 (652)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHH
Confidence 556666777788999999999999999998876433222222 1211 1 1111222
Q ss_pred HHcCCCCHHHHHHHHHHHHhcC-------CC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-----
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYC-------DP---------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC----- 1794 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~-------~~---------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~----- 1794 (1935)
...|+ ...|.++++.|+.++ +. ..+...++-++...|+.++|.++|...++..+...
T Consensus 186 i~~gk--y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 186 IENGK--YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred Hhccc--HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 34453 378888888885443 11 16778888899999999999999999887764211
Q ss_pred ------------------------HHHHHHHHHHHH--------------------c-CHHHHHHHHHHHHHhCCCCC--
Q 000173 1795 ------------------------KVWLRRVQRLLK--------------------Q-QQEGVQAVVQRALLSLPRHK-- 1827 (1935)
Q Consensus 1795 ------------------------~vw~~~~~~l~~--------------------~-~~e~A~~ll~ralk~~p~~~-- 1827 (1935)
.....++++.+. . ..+.+++ ....+|...
T Consensus 264 ~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~----~~a~lp~~~p~ 339 (652)
T KOG2376|consen 264 AVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE----LSASLPGMSPE 339 (652)
T ss_pred HhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHhCCccCch
Confidence 011111111111 1 2222222 222333321
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCch
Q 000173 1828 -HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRLGDVDLIRGLFE--------RAISLSLPPK 1897 (1935)
Q Consensus 1828 -~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~g~~e~ar~lfe--------ral~~~~~pk 1897 (1935)
.+.+...-+...... .+..|..++......+|.+ ..+....+++.+..|+++.|..++. ........|.
T Consensus 340 ~~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREK-KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 123333333333333 6788888888888889987 6678889999999999999999998 3333222221
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+--....+..+-++...+..++..|+.|+...+
T Consensus 419 ----~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 419 ----TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred ----HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 222223344556677779999999999998653
No 285
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.67 E-value=0.0001 Score=67.45 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
..|..+++.|++++|+.+|+++++.+|.+.++|..++.++...|++++|+.+|++++. ..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 4677888888888888888888888888888888888888888888888888888887 4443
No 286
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.66 E-value=0.0009 Score=74.47 Aligned_cols=83 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
.|+.++..+... ++++|...|++++...|... ...+|..+|.+++..|++++|...|++++...|.+...|..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444444 55555555555554433321 1245555555555555555555555555555555555555555555
Q ss_pred HHcCC
Q 000173 1874 IRLGD 1878 (1935)
Q Consensus 1874 ~k~g~ 1878 (1935)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44443
No 287
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00018 Score=66.65 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g-~~e~ar~lferal~ 1891 (1935)
.+|...|..++..|++++|...|+++++.+|++..+|..++..+...| ++++|...|+++++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555445555555555554 34455555555444
No 288
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.00076 Score=81.40 Aligned_cols=164 Identities=15% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----PK---KVHLALLGLYERTEQNKLADELLYKMIKKFK------ 1791 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~----~~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------ 1791 (1935)
..++..-++.+...+++ +.|-+.|.+|..... .. +.|...+.+|.+. ++++|.+.|++++..|.
T Consensus 35 a~~y~~Aa~~fk~~~~~--~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDW--EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-C--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence 35666666666677755 777888888765532 11 6677777777666 77788888888877662
Q ss_pred CCHHHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 000173 1792 HSCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---- 1861 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---- 1861 (1935)
....++..++..+... ++++|.+.|++|+..+.... ...++.+.|.++.+.|++++|..+|+++....-.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 2245566777777666 77888888888877653322 1367777777877888888888888877765422
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1862 RT---DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1862 ~~---dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+. +.+...+-.++..||...|+..|++...
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22 2344445556667788888888888776
No 289
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.65 E-value=0.01 Score=84.18 Aligned_cols=237 Identities=13% Similarity=0.095 Sum_probs=161.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H---HHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K---KVHLA 1765 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~---~v~~~ 1765 (1935)
+..+...|+++.|+..+++|+...+..........+..+.......| +.+.|...|++++..... . ..+..
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34456889999999999999975443221112233344455566788 559999999999976432 1 45566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC---ChHHHHH
Q 000173 1766 LLGLYERTEQNKLADELLYKMIKKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH---KHIKFIS 1833 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k~~~~--------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~---~~~~~~~ 1833 (1935)
++.++...|+++.|.+.+++++..... ...++..++..+... ++++|+..+++++...... .....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 778899999999999999998875421 122344566777777 9999999999998864321 2345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCchh-HHHHHHH
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRT--DLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPPKK-MKFLFKK 1905 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~--dlw~~-----ya~~e~k~g~~e~ar~lferal~~~~~pk~-~k~l~~~ 1905 (1935)
..|.++...|+++.|+..+++++...+... ..|.. .+..+...|+.+.|+.++.+.......... ....+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 788899999999999999999987644321 11211 123334579999999998886541111110 0012344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
+.......|+.+.|...+++|++..+
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45556678999999999999988754
No 290
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.65 E-value=0.0012 Score=71.28 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
+.++|...|..+... + .. +...+...++...+..|... -...++..|..++..|++++|...|
T Consensus 7 ~~~~a~~~y~~~~~~--------------~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l 71 (145)
T PF09976_consen 7 QAEQASALYEQALQA--------------L-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAAL 71 (145)
T ss_pred HHHHHHHHHHHHHHH--------------H-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345566666666542 1 34 78889999999999998873 2467888899999999999999999
Q ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1853 EGILSEYPKR---TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1853 e~al~~~Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
+.++...|+. ..++..++.+++..|+++.|...++.+.. .+ -.. ..|....+.....|+.+.|+..|++|+
T Consensus 72 ~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~-~~~-~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 72 EKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD--EA-FKA-LAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC--cc-hHH-HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999988664 33688889999999999999999977433 22 223 467777788999999999999999985
No 291
>PRK11906 transcriptional regulator; Provisional
Probab=97.65 E-value=0.0012 Score=81.14 Aligned_cols=111 Identities=10% Similarity=0.077 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
...+|.++-.+|+...|.+. .+....|.+..-.++++.|..+|++++..+|+..++|+.++.+++-.|+.++|+..++
T Consensus 319 ~~~~a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57888899999999988874 6666677766667789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1888 RAISLSLPPKKMK-FLFKKYLEYEKSVGEEERIEYVK 1923 (1935)
Q Consensus 1888 ral~~~~~pk~~k-~l~~~yl~~E~~~G~~e~a~~v~ 1923 (1935)
+++. +.|.+++ .+.+.|++++..++ .+.+..+|
T Consensus 397 ~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 397 KSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 9998 6666543 56777886665443 33444444
No 292
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.65 E-value=5e-05 Score=65.51 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=54.1
Q ss_pred cceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCC-CCCCCcccccCCCeEEEEEeccC
Q 000173 971 HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029 (1935)
Q Consensus 971 G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~-~~~~~~~~f~~Gq~v~a~V~~~~ 1029 (1935)
++.++|.|+++.++|++||+.+.+.++++.-.+|+| ++++.++++++||++.+.|....
T Consensus 1 ~S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 1 DSRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CCccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 356789999999999999999999999999999999 88889999999999999988764
No 293
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.64 E-value=5.2e-05 Score=86.06 Aligned_cols=155 Identities=19% Similarity=0.260 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLAD 1780 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~ 1780 (1935)
.+-+.|..||--|.. -.-++|=++.|++.|..... -+|..+ +|...... +.+---++ ..+..
T Consensus 32 ~IvktRr~fE~rL~r-----r~~klnDf~~YI~yE~nlek---lRaKR~-Kr~~v~~K--------~s~sD~si-pqk~~ 93 (435)
T COG5191 32 RIVKTRRKFELRLQR-----REKKLNDFMRYIKYECNLEK---LRAKRV-KRKKVGKK--------ASFSDMSI-PQKKI 93 (435)
T ss_pred HHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHhhHHH---HHHHHH-HHHHhccc--------ccchhccc-cceee
Confidence 344667777766643 12346778888888766552 122221 22221100 00000011 11112
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 000173 1781 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1781 el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~ 1858 (1935)
=.|.++..+|++.+++|..|+.+.... .+.+...+|..+|+.+|.+ +++|...+.+++ .+++.+.+|++|.++|+.
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n--vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN--VDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 235566778899999999999988888 9999999999999999998 599999888876 788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 000173 1859 YPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1859 ~Pk~~dlw~~ya~~e~k 1875 (1935)
+|..+-+|..|..||..
T Consensus 172 N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 172 NSRSPRIWIEYFRMELM 188 (435)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 99999999999999874
No 294
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.63 E-value=8.4e-05 Score=90.01 Aligned_cols=108 Identities=17% Similarity=0.346 Sum_probs=79.4
Q ss_pred CCCCCCCEEEEEEEEEeCCe-EEEEEeccccc----c-hhhHHhhhhhcCCCcEEEEEEEEEecce-EEEEEcCCeEEEe
Q 000173 541 KKFKVGAELVFRVLGVKSKR-ITVTHKKTLVK----S-KLAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFA 613 (1935)
Q Consensus 541 ~~fkvG~~v~~rVL~v~~~~-i~ltlK~~l~~----~-~~~~~~~~~~~~~G~~~~g~V~~i~~~G-~~V~~~~~v~g~v 613 (1935)
..+++|+.++..+-.-+-+| ..-+.|+.+.. . +..++..|.+ +.|+++.|+|.++.+.| +||++ |++.||+
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 35899999998774433233 33334443311 1 1233445544 68999999999999988 69999 7999999
Q ss_pred cCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCC--CEEEEEEee
Q 000173 614 PRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMM 656 (1935)
Q Consensus 614 p~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~--~ri~lS~k~ 656 (1935)
|.++.. |.+.|++|+.++|.|++++... ..+.||.+.
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 999996 4467999999999999999554 579999864
No 295
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.62 E-value=5.1e-05 Score=91.77 Aligned_cols=77 Identities=19% Similarity=0.415 Sum_probs=69.5
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++..|-+++++|+.+.++|+||+|.+ ...||||+|+|+.+++..+++.+.+||.+.++.+..|+ .+.+.++-|+.
T Consensus 663 ~~~l~~g~vy~~tIt~~rd~G~~V~l~p-~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~-~g~~~ls~ral 739 (760)
T KOG1067|consen 663 VQDLEFGGVYTATITEIRDTGVMVELYP-MQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDP-RGGIMLSSRAL 739 (760)
T ss_pred ccceEeeeEEEEEEeeecccceEEEecC-CchhhccchhcccccccChHHHHhhcceeEEEEEeecC-ccceeehhhhh
Confidence 4588999999999999999999999998 89999999999999999999999999999999999996 55566665654
No 296
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.0007 Score=80.02 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHH-HHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 000173 1793 SCKVWLRRVQRL-LKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLW 1866 (1935)
Q Consensus 1793 ~~~vw~~~~~~l-~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---~~dlw 1866 (1935)
....|+..+..+ +.. ++++|...|+..++.+|.... ..+++.+|++++..|+++.|...|++++..+|+ ..+.|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 457888888876 556 999999999999999999753 579999999999999999999999999999887 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
...+..+...|+.+.|+.+|++++. .+|+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~--~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK--KYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 9999999999999999999999998 4444
No 297
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.0011 Score=82.38 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
-+-..++.++...++++.|.++|+++.+..| .++..++..++.. +..+|.+++.++++..|.. ..++...|+++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 3344456677778899999999999998764 5778889988888 8899999999999999877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
.+.++++.|..+.++++...|.....|..++..|++.|+++.|...++.+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998777643
No 298
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.027 Score=70.29 Aligned_cols=247 Identities=15% Similarity=0.144 Sum_probs=155.8
Q ss_pred HcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hcccc----chh-hHH-HHHHHHHHHHHHcCCCCHHHHHH
Q 000173 1680 RSSPN-SSFVWIKYMAFMLSMADVEKARSIAERALQ----TINIR----EEN-EKL-NIWVAYFNLENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1680 ~~~P~-s~~lW~~y~~~~l~~~e~dkAr~v~erAl~----~i~~~----ee~-Ekl-~lW~ayl~le~~~g~~~~e~a~~ 1748 (1935)
...|. +.++..+.+-.++..|.+++|.++++.|++ ++.-. ++. +.+ .+-++++......| ..++|..
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G--qt~ea~~ 245 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG--QTAEASS 245 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc--chHHHHH
Confidence 33454 677888888889999999999999999954 22111 111 112 35566677777889 4589999
Q ss_pred HHHHHHhcCCCHHHHHH------------------------------HHH--------------------HHHHcCChHH
Q 000173 1749 VFQRALQYCDPKKVHLA------------------------------LLG--------------------LYERTEQNKL 1778 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~------------------------------l~~--------------------i~~~~~~~~~ 1778 (1935)
+|...++.++...-..+ ++. +..-.++.+.
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999987743211111 111 1112222333
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILS 1857 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~ 1857 (1935)
++++..+.-..+|...---+.......+. .+..|.+++......+|.+. ..+....||+.+.+|+++.|..+++..+.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-KVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 33322222222211111111111111222 57788888888888887763 57888899999999999999999995542
Q ss_pred hC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1858 EY----PK---RTDLWSIYLDQEIRLGDVDLIRGLFERAISL---SLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1858 ~~----Pk---~~dlw~~ya~~e~k~g~~e~ar~lferal~~---~~~p-k~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
.. ++ ...+-.....++.+-++.+-|..++..|+.- ..+. .....+|.....|+.++|+.+++..+++.-
T Consensus 405 ~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 405 SWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 21 11 2234555566778888888899999999861 1111 223367888999999999999999999887
Q ss_pred HHH
Q 000173 1927 MEY 1929 (1935)
Q Consensus 1927 le~ 1929 (1935)
++|
T Consensus 485 ~k~ 487 (652)
T KOG2376|consen 485 VKF 487 (652)
T ss_pred HHh
Confidence 764
No 299
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0016 Score=72.50 Aligned_cols=94 Identities=11% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~---~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|+.++..|...+++++|...|+++++..++ ...+|+.++..+... ++++|...|++++...|.. ...+..+|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ--PSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHH
Confidence 55677777777888888888888888766543 246777888888777 8888888888888877765 47777778
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al 1856 (1935)
.++...|+...+...++.++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH
Confidence 87777777555554444443
No 300
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.55 E-value=0.0002 Score=96.82 Aligned_cols=72 Identities=28% Similarity=0.405 Sum_probs=64.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCccc-----------CCccccCCCCcEEEEEEEEEeCCCCEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~~~~ri 1443 (1935)
-++|+++.|.|++|+++|+||.|.+ +++|+||+++|+++|. .+....|++||.|+++|+++|..+++|
T Consensus 625 ~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~I 704 (709)
T TIGR02063 625 EKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGKI 704 (709)
T ss_pred ccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCeE
Confidence 4689999999999999999999987 7999999999997642 234567999999999999999999999
Q ss_pred EEEE
Q 000173 1444 EVTL 1447 (1935)
Q Consensus 1444 ~lSl 1447 (1935)
.+++
T Consensus 705 ~~~l 708 (709)
T TIGR02063 705 DFEL 708 (709)
T ss_pred EEEE
Confidence 9986
No 301
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.55 E-value=0.00012 Score=89.25 Aligned_cols=106 Identities=16% Similarity=0.296 Sum_probs=78.3
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEecccccchh-----hHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecC
Q 000173 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~-~~~i~ltlK~~l~~~~~-----~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 615 (1935)
..++|+.++..+-..+ ++....+.|+.+...-. .++..|.+ +.|+++.|+|.++..+|+||++ |++.||+|.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~-k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSE-REGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 33334444444443211 22333322 6899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEEEe
Q 000173 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1935)
Q Consensus 616 se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS~k 655 (1935)
+++. |.+.|++|+.++|.|++++.+.+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 45789999999999999996654 5788764
No 302
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0029 Score=82.01 Aligned_cols=98 Identities=10% Similarity=0.065 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
...+.+.+++++..........++..+|......|++++|...|++++...| +...|..++.++...|+.++|...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455555566555422222246677777777777888888888888888888 467788888888888888888888888
Q ss_pred HHhcCCCchhHHHHHHHHHHH
Q 000173 1889 AISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1889 al~~~~~pk~~k~l~~~yl~~ 1909 (1935)
|+. +.|.....+|-.=+-|
T Consensus 479 A~~--L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 479 AFN--LRPGENTLYWIENLVF 497 (517)
T ss_pred HHh--cCCCCchHHHHHhccc
Confidence 887 5554433344333334
No 303
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.001 Score=80.35 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CC-H
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC---DP-K 1760 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~-~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~---~~-~ 1760 (1935)
..++..-+..+...+++++|.+.|.+|....- .....+-.+.|..-.+++... + .+.|...|++|+... .. .
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--PDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--HHHHHHHHHHHHHHHHhcCcHH
Confidence 45666667777888999999999999986322 222223335555555554444 3 488999999999763 22 1
Q ss_pred ---HHHHHHHHHHHHc-CChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--
Q 000173 1761 ---KVHLALLGLYERT-EQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-- 1827 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-- 1827 (1935)
..+..++.+|+.. +++++|.+.|++++..|. ....++..++.++.+. ++++|.++|++.....-...
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 8899999999998 999999999999999884 2256678899999999 99999999999988653321
Q ss_pred --hH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1828 --HI-KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1828 --~~-~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+ ..+...+-+++..||+..|+..|++....+|.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12 35566666778999999999999999988875
No 304
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.041 Score=65.28 Aligned_cols=219 Identities=17% Similarity=0.155 Sum_probs=124.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcC
Q 000173 1696 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTE 1774 (1935)
Q Consensus 1696 ~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~ 1774 (1935)
-+-.|+++.||.-|+-++.. | |.--+-+-.-|+.- .+.| ..+.|+...++|-...|.. =.|.+.+.-.+..|
T Consensus 130 al~eG~~~~Ar~kfeAMl~d-P---EtRllGLRgLyleA-qr~G--areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD-P---ETRLLGLRGLYLEA-QRLG--AREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC-h---HHHHHhHHHHHHHH-Hhcc--cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 34556666666666666632 2 11112222222222 3455 3366666666666666553 45555555556666
Q ss_pred ChHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHH-c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1775 QNKLADELLYKMIKKFKHSC------KVWLRRVQRLLK-Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~------~vw~~~~~~l~~-~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
+.+.|..+........--.. ..-+.-+..... . +...|+..-..++|..|.- +..-...|..+|+.|+.-
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl--vPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL--VPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc--chHHHHHHHHHHhccchh
Confidence 66666666654432211111 111111111111 1 5666666666666666555 355556666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------HHHcCCHHHHHHHHHHHHhcC
Q 000173 1847 RGRSMFEGILSEYPKRTDLWSIYLDQ---------------------------------EIRLGDVDLIRGLFERAISLS 1893 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~~ya~~---------------------------------e~k~g~~e~ar~lferal~~~ 1893 (1935)
+|-.++|.+.+..|. .++|..|.+. -.-.|++-.||.--|.+..
T Consensus 281 Kg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 281 KGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred hhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 666666666666654 4666666554 2234666667776666666
Q ss_pred CCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000173 1894 LPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1928 (1935)
Q Consensus 1894 ~~pk~~k~l~~~yl~~E~~~-G~~e~a~~v~~rAle 1928 (1935)
..|.. .+|.-+.++|+.. ||..++++...+|+.
T Consensus 358 ~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 358 EAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 55544 4788889998876 999999999988864
No 305
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0016 Score=75.49 Aligned_cols=194 Identities=14% Similarity=0.090 Sum_probs=114.7
Q ss_pred HhccCCCCcHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC
Q 000173 1663 LLEKDAPRTPDEFERLVRSS---PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1663 ~~~~~~~~a~~~ferll~~~---P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
+...+...|+...+-.+... -++..+|+.+..| .+|++++|.+.|+-+...-... ..+|+.++-...-+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~Y~~~~~~~~~~-----~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNVYTFLMNKDDAP-----AELGVNLACCKFYLG 105 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHHHHHHhccCCCC-----cccchhHHHHHHHHH
Confidence 33445667777666554322 2366777777655 4577888888887666532221 236665555444455
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
.+ .+|..+.++|-+.--...+.+.++ .+.++-.+-.. |+.-+. +...=-+.++...+.. .+++|.++|.|
T Consensus 106 ~Y--~eA~~~~~ka~k~pL~~RLlfhla---hklndEk~~~~-fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 106 QY--IEAKSIAEKAPKTPLCIRLLFHLA---HKLNDEKRILT-FHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HH--HHHHHHHhhCCCChHHHHHHHHHH---HHhCcHHHHHH-HHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 32 666666665532211112222222 23333333222 222221 2223344555555555 89999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.|.-.|.. +.+-...|..+++..-++-+..++.-.|+..|+.+-..+-.+--.+
T Consensus 177 vL~dn~ey--~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 177 VLQDNPEY--IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLF 230 (557)
T ss_pred HHhcChhh--hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHh
Confidence 99988766 4555666777889999999999999999999998765554444333
No 306
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00029 Score=65.35 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~P 1860 (1935)
++.+|..+|..++.. ++++|...|.++++..|.+ ..+|..+|..++..| ++++|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~--~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN--AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH--HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 578999999999999 9999999999999999876 699999999999999 79999999999999988
No 307
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0018 Score=75.44 Aligned_cols=119 Identities=12% Similarity=0.113 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HcC--CHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF-KNG--VADRGRSM 1851 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~-~~g--~~e~Ar~i 1851 (1935)
.+....-++.-+...|++..-|..++..|+.+ ++..|...|.+|++..|++ +.++..||+.++ ..| +-.+|+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44555556677788899999999999999999 9999999999999999988 699999999776 333 56799999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
|.+++..+|.+....+.|+.-++..|++.+|...++..+. .+++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~-~lp~~ 260 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD-LLPAD 260 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCC
Confidence 9999999999999999999999999999999999999998 34443
No 308
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.50 E-value=0.096 Score=59.00 Aligned_cols=216 Identities=16% Similarity=0.122 Sum_probs=157.1
Q ss_pred CCcHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1669 PRTPDEFERLVRSSPN--SSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~--s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
..+...+...+...+. ....+...+..+...+.+..+...+..++.. .. ......|..+..+....+ ....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~ 113 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL----PNLAEALLNLGLLLEALG--KYEE 113 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHHHh--hHHH
Confidence 3444555566555555 3677777788888888999999888888863 11 112356677777777777 3478
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHH-HHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLG-LYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~-i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
+...+..++...+.. ..+..... ++...++++.|...|.+++...+ .....+..+...+... +++.|...+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 888888888876654 33444444 78888999999999999877433 3445555555555555 889999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1820 LLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+...+.. ....+...+..+...++.+.|...+..++...|.....|......+...+..+.+...+.+++.
T Consensus 194 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9888762 2478888888888888899999999999998888666666666655567778888888888887
No 309
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.011 Score=73.18 Aligned_cols=218 Identities=16% Similarity=0.111 Sum_probs=142.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------HHHHHHH
Q 000173 1696 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------KVHLALL 1767 (1935)
Q Consensus 1696 ~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--------~v~~~l~ 1767 (1935)
..+..+++.|...|..++... .+ +.........+...+ ....+......|++..-.. .....++
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~----it~~~n~aA~~~e~~--~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TD----ITYLNNIAAVYLERG--KYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hh----hHHHHHHHHHHHhcc--HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 334456677777777777532 11 223334444455555 3355566666665554321 2233344
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCC--C----------HHHH--------------HHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKH--S----------CKVW--------------LRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~--~----------~~vw--------------~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
+.|...++++.|...|++++..+.. . ...| ..-+.-++.. ++..|...|.+|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5677778899999999998876542 0 1111 1223334444 8888889999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK 1900 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k 1900 (1935)
+..|.+ ..+|.+.|..+.+.|.+.+|..-.+.+++.+|+..-.|..-+..+.-..+++.|...|..++. ..|.+.
T Consensus 386 kr~P~D--a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~- 460 (539)
T KOG0548|consen 386 KRDPED--ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNA- 460 (539)
T ss_pred hcCCch--hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhH-
Confidence 998887 488999999999999999999999999999999888888888888888889999999999988 666665
Q ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 000173 1901 FLFKKYLEYEKS-VGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1901 ~l~~~yl~~E~~-~G~~e~a~~v~~rAl 1927 (1935)
.+-..|..-... +|+ +.-..+++|++
T Consensus 461 e~~~~~~rc~~a~~~~-~~~ee~~~r~~ 487 (539)
T KOG0548|consen 461 EAIDGYRRCVEAQRGD-ETPEETKRRAM 487 (539)
T ss_pred HHHHHHHHHHHHhhcC-CCHHHHHHhhc
Confidence 233333332222 222 23345666654
No 310
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00026 Score=68.54 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
+++.|..+|++++...|......+|..+|..+++.|++++|..++++ +...|.+.+.+..+++.+++.|++++|+.+|+
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45666666666666666422345566666666666666666666666 55556555655556666666666666666666
Q ss_pred HH
Q 000173 1888 RA 1889 (1935)
Q Consensus 1888 ra 1889 (1935)
++
T Consensus 83 ~~ 84 (84)
T PF12895_consen 83 KA 84 (84)
T ss_dssp HH
T ss_pred cC
Confidence 54
No 311
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.49 E-value=0.00065 Score=58.00 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=55.8
Q ss_pred ccEEEEEEEEeeccee-EEEeccCCceeEEEeeeecCCccccCCCeEEEEEEEeeccccEEEEee
Q 000173 875 GSVIEGKVHESNDFGV-VVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938 (1935)
Q Consensus 875 G~~v~g~V~~~~~~g~-~v~~~~~~~v~g~i~~~~ls~~~~~~G~~v~~~vl~~~~~~~~v~ls~ 938 (1935)
|+..+.+|.+..++|. .++-.+-.|++-..+.+|+.|..+.+|++++++||++|.-+..+++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 6778889999888874 466666667888899999999999999999999999999999999885
No 312
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0013 Score=72.92 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1746 VVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1746 a~~vferAl~~~~~~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
+...+...++..+.. ..|+.++.++...+++++|...|.+++...++. ..+|.+++..+... ++++|...|++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444333322 566666667777777777777777776665432 34667777766666 77777777777
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|+...|.. ...|...|.++..
T Consensus 98 Al~~~~~~--~~~~~~la~i~~~ 118 (168)
T CHL00033 98 ALERNPFL--PQALNNMAVICHY 118 (168)
T ss_pred HHHhCcCc--HHHHHHHHHHHHH
Confidence 77666554 3556666666663
No 313
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0015 Score=78.54 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=107.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1730 AYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1730 ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
.-.|.+.+.|++ ..|..-|+||+...+.. ++-+.++... ... + -..++++++.++++. .
T Consensus 213 e~Gn~~fK~gk~--~~A~~~Yerav~~l~~~-----------~~~~~ee~~~-~~~-~-----k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 213 ERGNVLFKEGKF--KLAKKRYERAVSFLEYR-----------RSFDEEEQKK-AEA-L-----KLACHLNLAACYLKLKE 272 (397)
T ss_pred HhhhHHHhhchH--HHHHHHHHHHHHHhhcc-----------ccCCHHHHHH-HHH-H-----HHHHhhHHHHHHHhhhh
Confidence 356777788855 88899999987665421 1111111111 111 1 235678899999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD-LIRGLFE 1887 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e-~ar~lfe 1887 (1935)
+.+|.+...++|...|.+ ++++++-|+.+...|+++.||..|+++++..|.|.++-..++.+-.+...+. +.+.+|.
T Consensus 273 ~~~Ai~~c~kvLe~~~~N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNN--VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877 6999999999999999999999999999999999999998888877766554 4588888
Q ss_pred HHHh
Q 000173 1888 RAIS 1891 (1935)
Q Consensus 1888 ral~ 1891 (1935)
+++.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 8886
No 314
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.47 E-value=0.00032 Score=64.83 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=67.0
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEee-ccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h-~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
.-.++|+.+. .|+.+.+.|++|.|-+-++.|++. .+|++..++..+.+.+ +|..+.+.|+.+|+++|-|.||.
T Consensus 12 ~~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 12 VFPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred ecCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 3457899998 889999999999998778999998 9999999999999999 99999999999999999999874
No 315
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.45 E-value=0.011 Score=67.64 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~a 1836 (1935)
.++..+..+.+.|++.+|.+.|+++...||.+ ..+++.++..++.. +++.|...|++.++.+|.+.++ .++...|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 34444566778899999999999999988744 67788888888888 9999999999999999988654 4555555
Q ss_pred HHHHH-----------cCCHHHHHHHHHHHHHhCCCCH----------HHHHHH-------HHHHHHcCCHHHHHHHHHH
Q 000173 1837 ILEFK-----------NGVADRGRSMFEGILSEYPKRT----------DLWSIY-------LDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1837 ~le~~-----------~g~~e~Ar~ife~al~~~Pk~~----------dlw~~y-------a~~e~k~g~~e~ar~lfer 1888 (1935)
...+. .+...+|...|+.++..+|++. .+...+ ++++.+.|.+..|..-|+.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 54432 2235688999999999999852 123222 4455678999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1889 AISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1889 al~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
++..=.........+...+.-..+.|..+.+
T Consensus 167 v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 167 VIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 9982112223334455555555667776643
No 316
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.43 E-value=0.061 Score=60.67 Aligned_cols=223 Identities=18% Similarity=0.137 Sum_probs=154.2
Q ss_pred cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCC-CHHHHHHHHHHHHHcCC
Q 000173 1699 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCD-PKKVHLALLGLYERTEQ 1775 (1935)
Q Consensus 1699 ~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~--~~~-~~~v~~~l~~i~~~~~~ 1775 (1935)
...+..+...+..++...+.. .....+..........+ ....+...+..++. ..+ ....|..++.++...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (291)
T COG0457 36 LGELAEALELLEEALELLPNS---DLAGLLLLLALALLKLG--RLEEALELLEKALELELLPNLAEALLNLGLLLEALGK 110 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc---cchHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh
Confidence 355566666666666544421 01234455555556666 44777778888875 233 34788888888888888
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHc-CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQ-RLLKQ-QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~-~l~~~-~~e~A~~ll~ralk~~p~-~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
+..+.+.+..+....+.....+..+.. .+... +++.|...|++++...|. ......+...+..+...++++.|...+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 888999888888776655555555555 56666 889999999988775552 233456666666677888899999999
Q ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1853 EGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1853 e~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.+++...|. ....+......+...++.+.+...+..++. ..+.....++.....+. ..|..+.+...+.+++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 191 EKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 999988888 578888888888888888889999988888 55443323333344444 667788888777777654
No 317
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.42 E-value=0.00044 Score=63.86 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=35.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++.|++++|..+|++++..+|.+.++|..++.++++.|++++|+.+|++++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777777777777777776666
No 318
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00041 Score=64.02 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
+.. ++++|.++|++++...|.+ ..++..+|.++++.|++++|+.+|++++..+|++..+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 344 6788888888888888876 4788888888888888888888888888888887777766554
No 319
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00049 Score=62.99 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1800 RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1800 ~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++..++.. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN--PEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44455555 5666666666666665553 4566666666666666666666666666666654
No 320
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.39 E-value=0.01 Score=77.13 Aligned_cols=156 Identities=10% Similarity=0.029 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HHcCCCCHHH
Q 000173 1672 PDEFERLVRSSPNSSFVWIKYMAFML--SMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLE-NEYGNPPEEA 1745 (1935)
Q Consensus 1672 ~~~ferll~~~P~s~~lW~~y~~~~l--~~~---e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le-~~~g~~~~e~ 1745 (1935)
....+++....|.+..+|-.|+.... ... +.++|+.+|++|++.-|. +-....++++.... ..+. ...+
T Consensus 323 ~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~--~~~~ 397 (517)
T PRK10153 323 ERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQ--PLDE 397 (517)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcC--CccH
Confidence 44455666677899999999888753 322 488999999999987663 22222222222211 1111 1000
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK--FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~--~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.+...+.+...+++.. .+..+.+|..++...... ++++|...|++|+..
T Consensus 398 ----------------------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 398 ----------------------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred ----------------------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 0111222233333332 233445555555555555 677777777777776
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~ 1863 (1935)
.|. ...|..+|.++...|++++|...|++|++.+|...
T Consensus 450 ~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 450 EMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 652 35677777777777777777777777777777654
No 321
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.39 E-value=0.00054 Score=78.12 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~ 1822 (1935)
-+.+..|+.-|+..... +-|+.|++.....++.- |.. +|+-....+ ..+.++- -+++..-+|.|+...
T Consensus 34 vktRr~fE~rL~rr~~klnDf~~YI~yE~nleklR-aKR-----~Kr~~v~~K--~s~sD~s---ipqk~~f~~~R~tnk 102 (435)
T COG5191 34 VKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLR-AKR-----VKRKKVGKK--ASFSDMS---IPQKKIFELYRSTNK 102 (435)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHH-HHH-----HHHHHhccc--ccchhcc---ccceeeEeeehhhhc
Confidence 34567777776665443 77888877664333221 111 111100000 0000100 234445577888888
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCchhHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI-RLGDVDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~-k~g~~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
+|++ +++|..|+..-.+.|.+.....+|-.+++.+|.+.|+|...+++++ -.++++.+|++|.+++. ++++.+ .
T Consensus 103 ff~D--~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR--~N~~~p-~ 177 (435)
T COG5191 103 FFND--PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR--MNSRSP-R 177 (435)
T ss_pred CCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc--cCCCCc-h
Confidence 8877 6999999999999999999999999999999999999999888876 57999999999999999 888888 6
Q ss_pred HHHHHHHHHHHc
Q 000173 1902 LFKKYLEYEKSV 1913 (1935)
Q Consensus 1902 l~~~yl~~E~~~ 1913 (1935)
+|..|..+|..+
T Consensus 178 iw~eyfr~El~y 189 (435)
T COG5191 178 IWIEYFRMELMY 189 (435)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 322
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.39 E-value=0.00019 Score=87.51 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=86.8
Q ss_pred cccccCCCeEeeEEEeecCCCeEEEeccchhcchhcc--CCcccccc--CCCCEEEEEEEEEecCeEEEEECCCeEEEee
Q 000173 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1935)
Q Consensus 715 ~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~~~~--~~~~~~~~--~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~ 790 (1935)
....++||.++.-+....-++....++|+.+...-.. --.-|+++ +.|+.++|+|.++.+.|+||.+ |++.||+|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 3467789988733332223344556667666544321 11124556 7899999999999999999999 66999999
Q ss_pred CCccCcccccCcccCccCCCEEEEEEEEeeCCCCe--EEEeecccccCCCCchhhHHHHHHH
Q 000173 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 791 ~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~r--l~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
.+++. |.+.|++||+++|.|.+++.+.++ +.||. +++.|+..+|..+
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSR-------t~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSR-------THPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEe-------CCHHHHHHHHHHh
Confidence 88774 357899999999999999976654 66665 4556777777654
No 323
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=97.38 E-value=0.00044 Score=74.44 Aligned_cols=74 Identities=24% Similarity=0.469 Sum_probs=62.0
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-C----------ccccCCCCcEEEEEEEEEeCCC-----C
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1441 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-~----------~~~~f~~G~~V~~kVl~vd~~~-----~ 1441 (1935)
.|++|.|.|+++.++|+||.+| -++||+|.+.+.|+|+. | -+..|++|+.|+++|+++.... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 5899999999999999999999 79999999999998532 1 2237889999999999887655 5
Q ss_pred EEEEEEecCcc
Q 000173 1442 RVEVTLKTSDS 1452 (1935)
Q Consensus 1442 ri~lSlk~~~~ 1452 (1935)
+|.+++|+.-.
T Consensus 160 ~I~lTmrq~~L 170 (183)
T COG1095 160 KIGLTMRQPGL 170 (183)
T ss_pred eEEEEeccccC
Confidence 78888888544
No 324
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0049 Score=73.57 Aligned_cols=163 Identities=14% Similarity=0.030 Sum_probs=129.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---------
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------- 1760 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--------- 1760 (1935)
+--+.++.-.++++.|..+.-+.++.-+.+. .-.|++=...|.+-..+.+...|+++|.+.|..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~-------~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDATNA-------EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccchh-------HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 3344556788999999999999997654322 222222111111114588999999999998752
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHH
Q 000173 1761 ----KVHLALLGLYERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKF 1831 (1935)
Q Consensus 1761 ----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~----~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~ 1831 (1935)
..|-.-++-..+.|++..|.+.|..++.+.|. +..+|.+.+....+. +..+|..--.+|++..|.. ++.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy--ika 323 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY--IKA 323 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH--HHH
Confidence 66777788888999999999999999999874 467788888888888 9999999999999998766 799
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1832 ISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1832 ~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
++..|+.+...++++.|.+.|+++++...+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999988655
No 325
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.37 E-value=0.0013 Score=79.05 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=75.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQ 1809 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~ 1809 (1935)
+....+ ..+.|.+.++.+-+..+.. ++..+|++++.-.+++.+|.-+|+.+..+|+.++.++..++...+.+ ++
T Consensus 140 i~L~~~--R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 140 ILLKMN--RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHTT---HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHcC--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 444556 3466777776666655543 55555555555555667777777776666666666666666666666 77
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCC
Q 000173 1810 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA-DRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~-e~Ar~ife~al~~~Pk~ 1862 (1935)
++|.++++.|+...|.+ +.++.+.+.+....|+. +.+...+.++-..+|.+
T Consensus 218 ~eAe~~L~~al~~~~~~--~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 218 EEAEELLEEALEKDPND--PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHCCC-CCH--HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhccCC--HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 77777777776665544 46666666666666655 55666666666666664
No 326
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.33 E-value=0.00082 Score=75.69 Aligned_cols=76 Identities=20% Similarity=0.436 Sum_probs=63.9
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCC-----
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLS----- 1440 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~~~----- 1440 (1935)
.+|+++.|.|++++++|+||+++ .++|+++.+++.+++.. +....|++|+.|+++|++++.++
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 46999999999999999999998 59999999999876432 33467899999999999998754
Q ss_pred CEEEEEEecCccc
Q 000173 1441 KRVEVTLKTSDSR 1453 (1935)
Q Consensus 1441 ~ri~lSlk~~~~~ 1453 (1935)
.+|.+|++..-..
T Consensus 159 ~~I~ls~~~~~LG 171 (187)
T PRK08563 159 SKIGLTMRQPGLG 171 (187)
T ss_pred CEEEEEecCCCCC
Confidence 3899999886543
No 327
>PRK11642 exoribonuclease R; Provisional
Probab=97.33 E-value=0.00057 Score=92.42 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=64.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cC----------CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VE----------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~-v~g~V~~s~lsd~~-~~----------~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
++|+++.|.|++|+++|+||+|.+. ++|+||+++|.|+| .- +....|++||.|+++|+++|.++++|.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999865 99999999999763 22 234679999999999999999999999
Q ss_pred EEEec
Q 000173 1445 VTLKT 1449 (1935)
Q Consensus 1445 lSlk~ 1449 (1935)
+++-.
T Consensus 722 f~l~~ 726 (813)
T PRK11642 722 FSLIS 726 (813)
T ss_pred EEEec
Confidence 99853
No 328
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.32 E-value=0.00059 Score=91.19 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC-CCcEEEEECccCCCcc-c----------CCccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~-~~v~g~V~~s~lsd~~-~----------~~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
++|+++.|.|++|+++|+||.|+ .+++|+||++++.|++ . .+....|++||.|+++|+++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2334679999999999999999999999
Q ss_pred EEE
Q 000173 1445 VTL 1447 (1935)
Q Consensus 1445 lSl 1447 (1935)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 886
No 329
>PRK11906 transcriptional regulator; Provisional
Probab=97.32 E-value=0.0078 Score=74.37 Aligned_cols=176 Identities=11% Similarity=0.095 Sum_probs=115.6
Q ss_pred HHcCCCCH---HHH--HHHHHHHHH--cC---CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc-C--CC--CH
Q 000173 1679 VRSSPNSS---FVW--IKYMAFMLS--MA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G--NP--PE 1743 (1935)
Q Consensus 1679 l~~~P~s~---~lW--~~y~~~~l~--~~---e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~-g--~~--~~ 1743 (1935)
...-|.+. ..| -.|+..... .+ ..+.|..+|+||+.+-+...++-...-|.++..+...+ | +. ..
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~ 320 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAA 320 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence 34446666 788 556555432 22 56788899999994333222333345555555554422 1 10 24
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
.+|.+..+||++..+.+ ..+..++.++...++++.|..+|+++....|++..+|+.++..+.-. +.++|.+.+++|+.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56788888888888765 67777777777777788888888888888888888888888877777 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
..|.+....+...+..+|+.+ -.+.|..+|-+-
T Consensus 401 LsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 401 LEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred cCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 888775444555555455443 344555554443
No 330
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.04 Score=64.81 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQT 1835 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~v---w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~ 1835 (1935)
..++..+.-+.+.|++++|.+.|++++..+|.+.-. .+.++..+++. +++.|...|++.++..|.+..+ .++...
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 445555666678899999999999999999877544 36777778888 9999999999999999998654 355665
Q ss_pred HHHHHHcC---------------CH---HHHHHHHHHHHHhCCCCHH---HH-------H-------HHHHHHHHcCCHH
Q 000173 1836 AILEFKNG---------------VA---DRGRSMFEGILSEYPKRTD---LW-------S-------IYLDQEIRLGDVD 1880 (1935)
Q Consensus 1836 a~le~~~g---------------~~---e~Ar~ife~al~~~Pk~~d---lw-------~-------~ya~~e~k~g~~e 1880 (1935)
|...+..+ |. ..|...|++.++.+|+..- ++ . .-+.++.+.|.+.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~ 192 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV 192 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence 55432222 23 3566889999999998622 11 1 2234456788898
Q ss_pred HHHHHHHHHHhcCCC--chhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLP--PKKMKFLFKKYLEYEKSVGEEERIEYVKQ 1924 (1935)
Q Consensus 1881 ~ar~lferal~~~~~--pk~~k~l~~~yl~~E~~~G~~e~a~~v~~ 1924 (1935)
-|..-|+.++. ..| +...+.+| ....-....|..+.+..+..
T Consensus 193 AA~~r~~~v~~-~Yp~t~~~~eal~-~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 193 AVVNRVEQMLR-DYPDTQATRDALP-LMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHH-HCCCCchHHHHHH-HHHHHHHHcCChHHHHHHHH
Confidence 89999999997 222 22222222 23334455777777665543
No 331
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.26 E-value=0.0035 Score=75.52 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=105.9
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1750 FQRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK--VWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1750 ferAl~~~~---~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~--vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
++.|++... ..+...-...+|.+.++++.|...++.|.+...++.- ++..|..+..-. ++++|..+|+.....+
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 344554443 3466677788999999999999999998765443322 222333333334 7999999999988777
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCchhH
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~-e~ar~lferal~~~~~pk~~ 1899 (1935)
+.. +.++...|..++..|++++|..+++.++..+|++.+.+...+-+..-.|+. +.+..++..+-. ..|...
T Consensus 198 ~~t--~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 198 GST--PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp --S--HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 654 688889999999999999999999999999999999999999998888887 667778887665 455443
No 332
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0082 Score=62.06 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---RTDLWSIY 1869 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~-~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---~~dlw~~y 1869 (1935)
.+++.++..+... +.++|..+|++++...... ....+++.+|..+...|++++|..+|+.++..+|. +..++..|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 4677777777777 8899999999998854333 22478999999999999999999999999999998 67788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000173 1870 LDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1870 a~~e~k~g~~e~ar~lferal~ 1891 (1935)
+......|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888899999999999888886
No 333
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.099 Score=68.39 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=145.9
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
.-.|-+..+++++.+||...+-.--+-.++++|..++|..+.+ |+...+.++ .. ..-.+-+++...+ ..+.|.
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D-~~---tLq~l~~~y~d~~--~~d~~~ 97 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGTD-DL---TLQFLQNVYRDLG--KLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCCc-hH---HHHHHHHHHHHHh--hhhHHH
Confidence 5566777889999999988777777777889999999996664 554444432 22 2333445566677 459999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHH---------HHHHHH
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---------GVQAVV 1816 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e---------~A~~ll 1816 (1935)
.+|+||++.+|.....++|...|.+-+.|.+-..+--++-|.+|..+-.+-.....+++. .++ -|+..+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 999999999999877777777777777777666666666678875544333333444433 322 244455
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1817 QRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1817 ~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..++.-..-....=...|-..+...|++++|...+..-+.. .+-+..+-+.-+++....+...+.-.+-.|++.
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 555544311111222233333444678899999999554433 344666777888999999999998888888888
No 334
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.22 E-value=0.00089 Score=64.83 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1849 (1935)
.++++.|..+|++++...+. ....|+.+|..+++. ++++|..++++ ++..+. ++..+..+|+.+++.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 56788888888888887763 466778888888888 88888888888 555443 3567777788888888888888
Q ss_pred HHHHHH
Q 000173 1850 SMFEGI 1855 (1935)
Q Consensus 1850 ~ife~a 1855 (1935)
..|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888874
No 335
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=97.19 E-value=0.0019 Score=62.91 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc-----------ccccCCCCEEEEEEEEEecCCCe
Q 000173 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI-----------ETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~-----------~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
+|+++.|.|+++.++|+||.++| +++++|.+.+.++..-++ ...+..|+.|++||+.+..+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~ 75 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATD 75 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCc
Confidence 58999999999999999999975 899999999976543221 34588999999999999776554
No 336
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.19 E-value=0.0033 Score=65.71 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHH
Q 000173 1810 EGVQAVVQRALLSLP-RHKHIKFISQTAILEFKN----GVADRGRSMFEGILSEYPKR---------TDLWSIYLDQEIR 1875 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p-~~~~~~~~~~~a~le~~~----g~~e~Ar~ife~al~~~Pk~---------~dlw~~ya~~e~k 1875 (1935)
++.++.|+..+.... .+..+..|..|..+..++ +.-..-..+++++++.+.++ ..+|..|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 445666777777666 555567777777766632 34555667788887766442 347888888643
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.++.+|..+.+.....+-+ .||..|..+.+..|+.+.|..||++++
T Consensus 81 -----~~~~if~~l~~~~IG~~~A-~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLA-LFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBH-HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHH-HHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888999888877777777 799999999999999999999998875
No 337
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.036 Score=64.64 Aligned_cols=204 Identities=16% Similarity=0.134 Sum_probs=110.5
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHH-HHHHHHHcCCCCHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~a-yl~le~~~g~~~~e~a 1746 (1935)
-.+|...|+-+...+--++.+|.+++-.+.-+|.+.+|..+.++|.++ | +.+. ++.+..+++ ++++
T Consensus 73 Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-p---------L~~RLlfhlahkln--dEk~- 139 (557)
T KOG3785|consen 73 YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-P---------LCIRLLFHLAHKLN--DEKR- 139 (557)
T ss_pred HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-h---------HHHHHHHHHHHHhC--cHHH-
Confidence 445555666555555567899999999999999999999999998854 2 2222 234445555 2222
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.-.|...|+-. .+--+.++.+....--|++|.++|.+.+-..+....+-..++.++.+. -++-+.+++.--|..+|.
T Consensus 140 ~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 140 ILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 22333333211 122333444433334455666666666554444444444555555555 555555566655665555
Q ss_pred CChHHHHHHHHHHHHH--cCC----------------HHHHHHHH----------HHHHHhCCCC----HHHHHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFK--NGV----------------ADRGRSMF----------EGILSEYPKR----TDLWSIYLDQE 1873 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~--~g~----------------~e~Ar~if----------e~al~~~Pk~----~dlw~~ya~~e 1873 (1935)
+. -+....|..+|+ +|+ ++.+..+. |.||+..|.- +.....++-.+
T Consensus 218 St--iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 218 ST--IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred cH--HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 42 111112222221 111 11111111 2334545542 23566777788
Q ss_pred HHcCCHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1874 ~k~g~~e~ar~lfer 1888 (1935)
.++++..+|.++...
T Consensus 296 L~q~dVqeA~~L~Kd 310 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKD 310 (557)
T ss_pred cccccHHHHHHHHhh
Confidence 899999999998765
No 338
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0068 Score=73.08 Aligned_cols=141 Identities=21% Similarity=0.236 Sum_probs=105.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1694 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERT 1773 (1935)
Q Consensus 1694 ~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~ 1773 (1935)
..+++.+++..|..-|+||+..++++. .+. .++ .+.+..+ -...|+.++.+|.+.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~---~ee-~~~~~~~-----k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFD---EEE-QKKAEAL-----KLACHLNLAACYLKL 270 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccc----------------cCC---HHH-HHHHHHH-----HHHHhhHHHHHHHhh
Confidence 457788999999999999997666422 111 111 1111111 125678888889999
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSM 1851 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~i 1851 (1935)
+.|..|.+...+++...+++.+..++.++.++.. +++.|+..|++|++..|.++ .+-..++.+-.+... .++.+.+
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk--a~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK--AARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998899999999999999999 99999999999999999885 566666666555544 4566889
Q ss_pred HHHHHHhCCC
Q 000173 1852 FEGILSEYPK 1861 (1935)
Q Consensus 1852 fe~al~~~Pk 1861 (1935)
|.+++...+.
T Consensus 349 y~~mF~k~~~ 358 (397)
T KOG0543|consen 349 YANMFAKLAE 358 (397)
T ss_pred HHHHhhcccc
Confidence 9998876553
No 339
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.011 Score=68.40 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a 1836 (1935)
.|.....+| .+++|..|...|..-+++||++ +..++=|++.++.+ +++.|..+|.++.+.+|++. -++.++++|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 444444444 6788999999999999999854 66677788889999 99999999999999999874 358999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
..+.++|+-+.|+..|+.+++.||+....-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 999999999999999999999999975543
No 340
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.03 E-value=0.0024 Score=59.78 Aligned_cols=55 Identities=25% Similarity=0.212 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
+++.|.+.+++++...|.+ +.+|..+|.+++..|+++.|...|+++++..|++.+
T Consensus 10 ~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4444444444444444443 244444444444444444444444444444444433
No 341
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.01 E-value=0.0012 Score=55.29 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
.+|..+|+.+...|++++|+.+|+++++.+|++.++|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 579999999999999999999999999999999999998875
No 342
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.067 Score=60.10 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=118.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH------HHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1766 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay------l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l 1766 (1935)
+..+-....+++|...+.+|.+-. |..+ ++|-+- +.|...... ..++..+|++|
T Consensus 38 AvafRnAk~feKakdcLlkA~~~y----Ennr-slfhAAKayEqaamLake~~k--lsEvvdl~eKA------------- 97 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGY----ENNR-SLFHAAKAYEQAAMLAKELSK--LSEVVDLYEKA------------- 97 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHH----Hhcc-cHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHH-------------
Confidence 455555667777777777666421 1111 233221 112222221 13444444444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFK 1841 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~ 1841 (1935)
..+|..+|..+.|-..++++-+ .++. ++++|.++|+|++..+.... -.+++.+.+..+.+
T Consensus 98 s~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 3566777777777666666654 4556 89999999999998775432 24677778888888
Q ss_pred cCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHc
Q 000173 1842 NGVADRGRSMFEGIL------SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS--LPPKKMKFLFKKYLEYEKSV 1913 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al------~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~--~~pk~~k~l~~~yl~~E~~~ 1913 (1935)
...+++|-.-|.+-. ..+|.....+...+-++.-..|+..|...|....+.. +.+... ......|.++. .
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~-r~lenLL~ayd-~ 240 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS-RSLENLLTAYD-E 240 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH-HHHHHHHHHhc-c
Confidence 888888888777653 3456655566666666666778888888888755421 223333 34555555543 6
Q ss_pred CCHHHHHHHHH
Q 000173 1914 GEEERIEYVKQ 1924 (1935)
Q Consensus 1914 G~~e~a~~v~~ 1924 (1935)
||.+.+..|+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 88888777763
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.11 Score=66.55 Aligned_cols=224 Identities=13% Similarity=0.085 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLY 1770 (1935)
Q Consensus 1691 ~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~ 1770 (1935)
+-+....++|-+++|..+|.++-+. ++.. .|+...|.+ .+|.++.+-- ..+.-.+.|+.|+..+
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~----------DLlN---KlyQs~g~w--~eA~eiAE~~-DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY----------DLLN---KLYQSQGMW--SEAFEIAETK-DRIHLRNTYYNYAKYL 868 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----------HHHH---HHHHhcccH--HHHHHHHhhc-cceehhhhHHHHHHHH
Confidence 3344455667777777777766531 1111 122333322 3333222210 0111235666666666
Q ss_pred HHcCChHHHHHHHHH----------HHHhcC----------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC-----
Q 000173 1771 ERTEQNKLADELLYK----------MIKKFK----------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----- 1824 (1935)
Q Consensus 1771 ~~~~~~~~A~el~~~----------~~k~~~----------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p----- 1824 (1935)
+..++.+.|.+.|++ |++.+| ..+++|.=|++++... +.+.|..+|..|-..+.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 666666666666664 333332 3455666666666666 66666666666533221
Q ss_pred --------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCCC---CHHHHHHH-----------H
Q 000173 1825 --------------RHKHIKFISQTAILEFKNGVADRGRSMFEGI------LSEYPK---RTDLWSIY-----------L 1870 (1935)
Q Consensus 1825 --------------~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a------l~~~Pk---~~dlw~~y-----------a 1870 (1935)
......+-+.+|+.|...|+.-+|...|-+| ++.... ...+|+.. +
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHH
Confidence 0111245556666666667766666665554 222211 11233321 1
Q ss_pred HHHHHcC-CHHHHHHHHHHH---------------------HhcCCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1871 DQEIRLG-DVDLIRGLFERA---------------------ISLSLPPK-KMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1871 ~~e~k~g-~~e~ar~lfera---------------------l~~~~~pk-~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.++...| ..++|-.+|.+| |..++.+. .+ .+..+-.+|-..+..+++|-.++-.|.
T Consensus 1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp-~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP-KLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2222222 445555444433 11234332 23 578888888887878888777776666
Q ss_pred HHHH
Q 000173 1928 EYVE 1931 (1935)
Q Consensus 1928 e~v~ 1931 (1935)
+|=.
T Consensus 1108 ~~~~ 1111 (1416)
T KOG3617|consen 1108 EFSG 1111 (1416)
T ss_pred HHHH
Confidence 6544
No 344
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.95 E-value=0.13 Score=59.25 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--HH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--KV 1762 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--~v 1762 (1935)
....|.+-+.-.++.|++++|...|+......|+++-.++..+=.+|+++ +-+ +.+.|...++|-++..|.. --
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y--k~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY--KNG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH--hcc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 45677777777888888888888888888888887766654444444444 344 3377888888888888763 33
Q ss_pred HHHHHHHHH---Hc----CC---hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1763 HLALLGLYE---RT----EQ---NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1763 ~~~l~~i~~---~~----~~---~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
|..|+..+. .. .+ ..+|...|+..+.+||++.= ...|..-+..+-..+ ...=
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~L-----A~~E 170 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDAL-----AGHE 170 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHHH-----HHHH
Confidence 333333221 11 11 34566677777888887643 112221111111111 1233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHh
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY---LDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y---a~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|.++++.|.+..|..-|+++++.+|+....--.+ ...+...|-.+.|... .++|.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~ 231 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLG 231 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHH
Confidence 5567788888888888888888888888765543333 3334456666655543 33444
No 345
>PRK05054 exoribonuclease II; Provisional
Probab=96.87 E-value=0.0025 Score=84.82 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=60.3
Q ss_pred CCC--cEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc---cc--cC-------cccccCCCCEEEEEEEEEecCCC
Q 000173 1467 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-------IETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1467 ~~G--~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~---~~--~~-------~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
++| +.+.|.|+.|++||+||+|.+.++.||+|++.+.+. +. .+ -...|+.||.|+++|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 465 599999999999999999998789999999999653 11 11 12579999999999999999999
Q ss_pred eeEEec
Q 000173 1533 RISLGM 1538 (1935)
Q Consensus 1533 ri~lsl 1538 (1935)
+|.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
No 346
>PRK15331 chaperone protein SicA; Provisional
Probab=96.83 E-value=0.038 Score=59.52 Aligned_cols=95 Identities=11% Similarity=-0.055 Sum_probs=82.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
--+.+.|++++|..+|.-++...+.+.+.|+.++.++... ++++|...|..|....+.+ +......|+.++..|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d--p~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND--YRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC--CCccchHHHHHHHhCCHH
Confidence 3445899999999999999988889999999999999998 9999999999999887665 366788899999999999
Q ss_pred HHHHHHHHHHHhCCCCHHH
Q 000173 1847 RGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dl 1865 (1935)
.|+..|+.++. .|....+
T Consensus 123 ~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 123 KARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHHHHHHHh-CcchHHH
Confidence 99999999988 4554443
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.82 E-value=0.0037 Score=72.26 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=95.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA 1845 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~ 1845 (1935)
++-|.+.|+|++|.++|.+++..+|.++-.+.+.+..|++. .+..|..-...|+..+.. .+++|...++.-+..|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHHHhhH
Confidence 46678899999999999999999999999999999999999 999999999999887633 379999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1846 DRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1846 e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
.+|..-+|++|+..|++..|--.|+++-
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 9999999999999999999988888764
No 348
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.82 E-value=0.016 Score=62.93 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=82.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Q 000173 1695 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERT 1773 (1935)
Q Consensus 1695 ~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~ 1773 (1935)
-++..|++++|..-|.+||...|.....++.-++...+.....++.+ +.|..-.-+|++++|.. ....+.+.+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--ESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--HHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 35678999999999999999999877777777777777777788855 88999999999999986 7777889999999
Q ss_pred CChHHHHHHHHHHHHhcCCCH
Q 000173 1774 EQNKLADELLYKMIKKFKHSC 1794 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~ 1794 (1935)
.+|++|.+-|.+.+...|...
T Consensus 182 ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchH
Confidence 999999999999988766433
No 349
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.80 E-value=0.0058 Score=57.20 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=57.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..+|.+.+++++|.+.+++++...|.++..|+.++.++... ++++|...|+++++..|...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 56889999999999999999999999999999999999999 99999999999999999774
No 350
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=96.74 E-value=0.0035 Score=58.14 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEe-CCCcEEEEE-CccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIML-SRKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l-~~~v~g~V~-~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
++|+++. .|+.+.+.|++|.| +.+++|.+. .++++.......++.+ +|....+.|+++|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5789998 88899999999987 557999999 9999999888888888 99999999999999999999984
No 351
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.011 Score=63.91 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=63.4
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEec---------CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCe
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1533 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~---------~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~r 1533 (1935)
..-++.|++|-|.|+++....+.|++-. +...|-+|+|++++.+++++++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 3467999999999999999999888841 12567789999999999999999999999999999984 45
Q ss_pred eEEeccc
Q 000173 1534 ISLGMKS 1540 (1935)
Q Consensus 1534 i~lslK~ 1540 (1935)
+.||++.
T Consensus 136 ~~Lst~~ 142 (188)
T COG1096 136 IQLSTKG 142 (188)
T ss_pred eEEEecC
Confidence 7777765
No 352
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=96.71 E-value=0.0074 Score=58.77 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCc-----------cccCCCCcEEEEEEEEEeCCC
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLS 1440 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~-----------~~~f~~G~~V~~kVl~vd~~~ 1440 (1935)
.|+++.|.|+++++.|+||.+| .+++|++...+.+++..+| ...+.+|+.|++||+.+..+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~ 73 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDA 73 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEcc
Confidence 4899999999999999999998 6889999988877655444 234678999999998886543
No 353
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.68 E-value=0.024 Score=59.31 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcC----CCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcC
Q 000173 1746 VVKVFQRALQYC----DPKKVHLALLGLYERT----EQNKLADELLYKMIKKFKHS---------CKVWLRRVQRLLKQQ 1808 (1935)
Q Consensus 1746 a~~vferAl~~~----~~~~v~~~l~~i~~~~----~~~~~A~el~~~~~k~~~~~---------~~vw~~~~~~l~~~~ 1808 (1935)
.++.|+..+... ++..+|..++.-..++ +.......++++++..|... ..+|+.|+. .
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~-----~ 78 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD-----L 78 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH-----H
Confidence 344555555433 2346666655533332 34455555666666555322 345555554 2
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
...++++|+.+....=...+..+|..||.++...|++++|.++|+.++
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 235566666665554445555666666666666666666666666543
No 354
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=96.67 E-value=0.0047 Score=58.71 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.3
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecC-----------------ceeEEeeccccCcccccC--cccccCCCCEEEEEEEEE
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1527 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~-----------------~v~Gl~h~sels~~~~~~--~~~~~~~Gd~V~~~Il~i 1527 (1935)
++|++|.|+|+++++.-+++.|--- ...|++|.+++.....+. +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 6899999999999999888887421 568999999987665543 689999999999999974
No 355
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.032 Score=57.69 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC---CHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVWLR 1799 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~---~~~vw~~ 1799 (1935)
+|+.+...+-..| ..++|...|++|+..... ...++.++..|...|++++|..++++++..||+ +..++..
T Consensus 3 ~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLG--REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4555556666777 447777777777775432 267777777777777777777777777777766 6666666
Q ss_pred HHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1800 RVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1800 ~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
++..+... +.++|.+.+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666 67776666655553
No 356
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.62 E-value=0.036 Score=58.41 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHH
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAIL 1838 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~a~l 1838 (1935)
+.-+.-..+.++|.+|.+.|+.+..+|| -...+-+.++..++.. ++++|...++|-++.+|.+..+ -+++..|..
T Consensus 14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3334455677888888888888888886 3355556666667777 8888888888888888887543 344455544
Q ss_pred HHHcCC---------------HHHHHHHHHHHHHhCCCCH
Q 000173 1839 EFKNGV---------------ADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1839 e~~~g~---------------~e~Ar~ife~al~~~Pk~~ 1863 (1935)
++.... ...|...|+++++.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 444433 6667777777777777754
No 357
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.59 E-value=0.075 Score=58.58 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1724 kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
|..+......++-..| --.-||--|.+|+...|.. .++.-++-.+...|+++.|.+.|...+...|...-..++.+-
T Consensus 64 RA~l~fERGvlYDSlG--L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi 141 (297)
T COG4785 64 RAQLLFERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 141 (297)
T ss_pred HHHHHHHhcchhhhhh--HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence 3334444444455556 3367888899999999886 777777777788999999999999999988877777777666
Q ss_pred HHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1803 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1803 ~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
.+.-. ++.-|.+-|..--+..|++..-.+|. .+-.+.-+|..|++-+
T Consensus 142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL 189 (297)
T COG4785 142 ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNL 189 (297)
T ss_pred eeeecCchHhhHHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHH
Confidence 66656 88888888888778887774333443 3333445677776543
No 358
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.011 Score=73.16 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=105.7
Q ss_pred ccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccc
Q 000173 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1935)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~ 833 (1935)
.+++++..|..++|.|.++..||+||++...+.||+|.+.++.. ..|.+|+.+-+.|..+.++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 46788999999999999999999999999999999999999852 248999999999999999888887766554
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEE--EEEEEEeecce--eEEEeccCCceeEEEeeeec
Q 000173 834 CCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDFG--VVVSFEEHSDVYGFITHHQL 909 (1935)
Q Consensus 834 ~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v--~g~V~~~~~~g--~~v~~~~~~~v~g~i~~~~l 909 (1935)
.... +.+.-.++. -..... +.+ .+|+.| +|+|+.++.++ -++++.+. +|+++..-+
T Consensus 189 ~~Y~-----------~~~~~ke~~----r~~i~~-id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aAAF 248 (715)
T COG1107 189 DRYR-----------EVQVEKELP----RTLIDD-LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAAAF 248 (715)
T ss_pred ccch-----------hhhhhhhcc----cccHHH-HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehhhh
Confidence 3211 000000000 000000 222 577665 58999988664 35777753 455555444
Q ss_pred CC--c----cccCCCeEEEEEEEeeccccEEEEe
Q 000173 910 AG--A----TVESGSVIQAAILDVAKAERLVDLS 937 (1935)
Q Consensus 910 s~--~----~~~~G~~v~~~vl~~~~~~~~v~ls 937 (1935)
.+ . .+++|+-|... =.++...+.+.+-
T Consensus 249 e~aGvRAyP~IevGdiV~Vi-G~V~~r~g~lQiE 281 (715)
T COG1107 249 EEAGVRAYPEIEVGDIVEVI-GEVTRRDGRLQIE 281 (715)
T ss_pred ccCCcccCCCCCCCceEEEE-EEEeecCCcEEEe
Confidence 32 1 57889888643 3345555655543
No 359
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.012 Score=66.20 Aligned_cols=73 Identities=23% Similarity=0.281 Sum_probs=65.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc----cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~----~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
++||.|-|+|..+...+-.|+|+.-..|.++++++.+.. ..+++..|.+||.|.|+|..+|+ ++.+.|++|..
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~~ 139 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKDE 139 (239)
T ss_pred CCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeecC
Confidence 589999999999999999999998899999999996654 35788999999999999999995 88999999653
No 360
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.31 Score=55.95 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=123.6
Q ss_pred CCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--
Q 000173 1684 NSSFVWIK-YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-- 1760 (1935)
Q Consensus 1684 ~s~~lW~~-y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-- 1760 (1935)
++-..|.- -+.+++..++++.|.....+.. .+.. --+++. ...+.. ..+-|++..+++.+..+..
T Consensus 105 ~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-~lE~----~Al~Vq-----I~lk~~--r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHDGDFDEALKALHLGE-NLEA----AALNVQ-----ILLKMH--RFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred chhHHHHHHhhHHhhcCCChHHHHHHHhccc-hHHH----HHHHHH-----HHHHHH--HHHHHHHHHHHHHccchHHHH
Confidence 33334444 4455688899999988777622 2210 011111 223334 3477888888887776653
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1761 -KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1761 -~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
++-.+|+.+..-.+++.+|.-+|+.+..+++..+.+....+.+.+.+ ++++|..+++.||...++. +.+..+..-+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d--petL~Nliv~ 250 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD--PETLANLIVL 250 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC--HHHHHHHHHH
Confidence 34455555556667899999999999999999999999999999999 9999999999999988776 5888888887
Q ss_pred HHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1839 EFKNGVA-DRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~g~~-e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
-...|.. +--...+.++...+|.. .|.. +..+..+=|+|++.
T Consensus 251 a~~~Gkd~~~~~r~l~QLk~~~p~h--~~vk---------~~~ekeaeFDrl~~ 293 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQLKLSHPEH--PFVK---------HLNEKEAEFDRLVL 293 (299)
T ss_pred HHHhCCChHHHHHHHHHHHhcCCcc--hHHH---------HHHHHHHHHHHHHH
Confidence 7777754 44445566666677775 3332 23344455666654
No 361
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.47 E-value=0.011 Score=65.22 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=61.3
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc------------cCcccccCCCCEEEEEEEEEecCC-
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKEK- 1531 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~------------~~~~~~~~~Gd~V~~~Il~id~~~- 1531 (1935)
..-.|+++.|.|+++.++|+||.+++ +++++|.+.+.++.. ++-...+..|+.|+++|+.+..+.
T Consensus 78 rPf~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~ 155 (176)
T PTZ00162 78 KPFKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDAS 155 (176)
T ss_pred ecCCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCC
Confidence 34579999999999999999999976 779999999975421 112357899999999998876443
Q ss_pred -CeeEEeccccccCC
Q 000173 1532 -RRISLGMKSSYFKN 1545 (1935)
Q Consensus 1532 -~ri~lslK~~~~~~ 1545 (1935)
.++-.+||..|.+.
T Consensus 156 ~~~~i~T~~~~~LG~ 170 (176)
T PTZ00162 156 NLFAIATINSDYLGP 170 (176)
T ss_pred CcEEEEEecCCCcCc
Confidence 34566888877654
No 362
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0023 Score=71.38 Aligned_cols=75 Identities=29% Similarity=0.528 Sum_probs=69.9
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
..++++|-+.|+.|.+-|+||.|-. .|+.|++-.||||..++..+.++.++|-.--|.|+.+|.++|-|.||.+.
T Consensus 14 Pev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrr 89 (304)
T KOG2916|consen 14 PEVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRR 89 (304)
T ss_pred CCcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhcc
Confidence 4689999999999999999999963 38999999999999999999999999999999999999999999999766
No 363
>PRK15331 chaperone protein SicA; Provisional
Probab=96.40 E-value=0.044 Score=59.03 Aligned_cols=96 Identities=11% Similarity=-0.029 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
++--.+++.-.-+.| ..+.|+.+|+-.+.+.+.+ +.|+.|+.++...++|++|..+|..+.....+++...+..+.+
T Consensus 37 le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQG--RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 444555665557788 5599999999999998875 9999999999999999999999999998888899999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHh
Q 000173 1804 LLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~ 1822 (1935)
++.. +.+.|+..|+-++..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhC
Confidence 9999 999999999999984
No 364
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.38 E-value=0.35 Score=52.43 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYL 1870 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya 1870 (1935)
..-.++++..+.+. ++.+|+..|+.++.-.=.+ ...+....|+..+..+++..|.+.+|.+.+.+|. ..|--..|+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 34456778888888 9999999999998754333 3689999999999999999999999999999986 466778889
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
..+-..|.+..|++-||.+++ .+|... --..|..|..++|...
T Consensus 168 R~laa~g~~a~Aesafe~a~~--~ypg~~--ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAIS--YYPGPQ--ARIYYAEMLAKQGRLR 210 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHH--hCCCHH--HHHHHHHHHHHhcchh
Confidence 999999999999999999999 665443 3556777777788443
No 365
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.35 E-value=0.045 Score=55.53 Aligned_cols=90 Identities=19% Similarity=0.078 Sum_probs=55.5
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC--ChHHHHHHHHHHHHHcCCHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH--KHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~--~~~~~~~~~a~le~~~g~~e 1846 (1935)
....++.+.|.+.|.+++...|..+.+|.+.++.+.-+ +.++|.+-+.+|+..-... .....+.+.+.+|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 34556666666666666666666666666666666666 6666666666666654322 22355666666666666666
Q ss_pred HHHHHHHHHHHhC
Q 000173 1847 RGRSMFEGILSEY 1859 (1935)
Q Consensus 1847 ~Ar~ife~al~~~ 1859 (1935)
.||+-|+.+-+.-
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666666665543
No 366
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=96.32 E-value=0.0061 Score=73.83 Aligned_cols=123 Identities=20% Similarity=0.273 Sum_probs=86.4
Q ss_pred ccccccCCCeEeeEEEeecCCCeEEEeccchhcchhccC--Ccccccc--CCCCEEEEEEEEEecC-eEEEEECCCeEEE
Q 000173 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQL--PSDASHI--HPNSVVHGYVCNIIET-GCFVRFLGRLTGF 788 (1935)
Q Consensus 714 ~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~l~~~~~~~--~~~~~~~--~~G~~~~G~V~~i~~~-G~fV~f~~gl~Gl 788 (1935)
+...+++||.+..-+..+.-++...-++|+.+...-..+ -.-|+++ +.|+.+.|+|.++... ++||.+ |+..|+
T Consensus 87 i~~~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~ 165 (374)
T PRK12328 87 IDPSVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKKKVGKIVFGTVVRVDNEENTFIEI-DEIRAV 165 (374)
T ss_pred hCCCCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEEecCCCEEEEc-CCeEEE
Confidence 344678999998433333334445566777773322211 0113333 4799999999999864 599999 689999
Q ss_pred eeCCccCcccccCcccCccCCCEEEEEEEEeeCCCC---eEEEeecccccCCCCchhhHHHHHHH
Q 000173 789 APRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG---RITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 789 v~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~---rl~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
+|+++.. |.+.|++||.++|.|.+|+...+ .+.||. +++.|+..+|..+
T Consensus 166 LP~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSR-------t~p~~v~~Lfe~E 217 (374)
T PRK12328 166 LPMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSR-------TSPKFLEALLELE 217 (374)
T ss_pred eCHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEc-------CCHHHHHHHHHHh
Confidence 9998774 56789999999999999998765 677775 4556777777654
No 367
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.30 E-value=1.4 Score=53.06 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=153.8
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHH-HHHHHHHHHHcCCCCHHHHH
Q 000173 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNI-WVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1670 ~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~l-W~ayl~le~~~g~~~~e~a~ 1747 (1935)
.++..-+++-..-|.-.-.|...+....+.|+.+.|..+.+..... +-.+...|+... .+.--..+.... +...|+
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda--dp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA--DPASAR 249 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC--ChHHHH
Confidence 3344445565666888888888888888888999888887665542 222233344322 222222223334 458899
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHH--HHhCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRA--LLSLP 1824 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ra--lk~~p 1824 (1935)
.....|+++.|.. -.-...+..|.+.++.-++-.+++++-|.+| ++.+|..|...-- -+.+..-++|+ |.++.
T Consensus 250 ~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY~~ar~---gdta~dRlkRa~~L~slk 325 (531)
T COG3898 250 DDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPDIALLYVRARS---GDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChHHHHHHHHhcC---CCcHHHHHHHHHHHHhcC
Confidence 9999999999887 5556667788899999999999999998875 7899988875322 23334444444 44442
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-g~~e~ar~lferal~ 1891 (1935)
.++.+..+..++.-+..|++-.||.--|.+....|.- .++.-+++++.-. ||..++|..+-+++.
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2335777788888889999999999999999998864 6777889988865 999999999999997
No 368
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.28 E-value=0.071 Score=56.23 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000173 1792 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl 1865 (1935)
.++..|+.-|.-.++. ++++|.+.|+.....+|.... ..+.+.++..+++.++++.|...+++.++.+|.+..+
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3566677777778888 999999999999999988643 3788888888999999999999999999999998764
No 369
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=96.21 E-value=0.025 Score=54.41 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=61.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
++||.|-|.|+.+...+-+|+|+....|.+|..++... .+..+..|++|+.|-|+|..+++ ....+||...+
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~-~~~~eLtc~~~ 76 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANR-DMEPELSCVDS 76 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCC-CCCeEEEEeCC
Confidence 58999999999999999999999889999999876543 45566789999999999999996 45688888664
No 370
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=96.13 E-value=0.0051 Score=81.18 Aligned_cols=77 Identities=21% Similarity=0.217 Sum_probs=68.3
Q ss_pred cCCCCEEEEEEEEEecCe---EEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 759 IHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G---~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
+..|..+.+.|++++..- |-|++.+|++||+|.+.+|+..+.+|...+++||+|.|+|+++|.++=...||++.+..
T Consensus 983 ~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sdl 1062 (1299)
T KOG1856|consen 983 FYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSDL 1062 (1299)
T ss_pred hccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHHh
Confidence 668999999999997765 56789999999999999999999999999999999999999999877677788876643
No 371
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.12 E-value=0.058 Score=54.78 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=78.0
Q ss_pred HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 000173 1801 VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT----DLWSIYLDQEIR 1875 (1935)
Q Consensus 1801 ~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~----dlw~~ya~~e~k 1875 (1935)
+-.+.+. +.+.|.+.|.++|..+|.+ ..+|.+.||.+.-+|+.+.|..-+++++.....+. +.+.+-+-++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3344455 9999999999999999998 48999999999999999999999999999865432 356666778899
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 000173 1876 LGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~ 1895 (1935)
.|+.+.||.-|++|-.+..+
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred hCchHHHHHhHHHHHHhCCH
Confidence 99999999999999984333
No 372
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=96.11 E-value=0.011 Score=80.05 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=65.6
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecCC
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1531 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~~ 1531 (1935)
+..-++|+.+.|+|.+|..||+||.|.+.+++|++|++.+.+++. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 456689999999999999999999998877999999999986432 223457999999999999999999
Q ss_pred CeeEEec
Q 000173 1532 RRISLGM 1538 (1935)
Q Consensus 1532 ~ri~lsl 1538 (1935)
++|.+++
T Consensus 697 ~~i~~~~ 703 (706)
T COG0557 697 RKIDFEL 703 (706)
T ss_pred cceEEEe
Confidence 9998875
No 373
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.08 E-value=0.058 Score=62.58 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=79.6
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya~~e~k~g~ 1878 (1935)
++.. ++..|...|..-++.+|.... ..+++-+++.+|.+|++++|..+|.++.+.+|++ .|..++++..+..+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4444 899999999999999999632 4788889999999999999999999999999874 6889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 000173 1879 VDLIRGLFERAIS 1891 (1935)
Q Consensus 1879 ~e~ar~lferal~ 1891 (1935)
.+.|+..|+.++.
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999998
No 374
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.04 E-value=0.017 Score=48.46 Aligned_cols=42 Identities=26% Similarity=0.289 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
..|..++..|.+.|++++|.++|+++++.+|++..+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788888888888888888888888888888888887764
No 375
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.024 Score=70.18 Aligned_cols=147 Identities=19% Similarity=0.268 Sum_probs=100.0
Q ss_pred hhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeC
Q 000173 578 SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1935)
Q Consensus 578 ~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~ 657 (1935)
.++++++.|...+|+|.++..+|+||++...++|++|.++++-. ..|.+|+.+-+.+..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 56889999999999999999999999999999999999999742 258899999999999999988877766433
Q ss_pred CC----------CCcccccc--CCCCeE--EEEEEEEecC-cEEE-EEEecCceeEEEeccccCC-cccccccccccccC
Q 000173 658 PT----------RVSEDDLV--KLGSLV--SGVVDVVTPN-AVVV-YVIAKGYSKGTIPTEHLAD-HLEHATVMKSVIKP 720 (1935)
Q Consensus 658 ~~----------~~~~~~~~--~~G~iv--~g~V~~v~~~-g~~V-~l~~~~~v~g~i~~~hLsd-~~~~~~~~~~~~k~ 720 (1935)
.. +-.....+ .+|+.| .|.|+.+.-. |-.| .+ -.-.|.++..-+-. -....| .+++
T Consensus 189 ~~Y~~~~~~ke~~r~~i~~id~~ig~tV~I~GeV~qikqT~GPTVFtl---tDetg~i~aAAFe~aGvRAyP----~Iev 261 (715)
T COG1107 189 DRYREVQVEKELPRTLIDDLDEMIGKTVRIEGEVTQIKQTSGPTVFTL---TDETGAIWAAAFEEAGVRAYP----EIEV 261 (715)
T ss_pred ccchhhhhhhhcccccHHHHHhhcCceEEEEEEEEEEEEcCCCEEEEE---ecCCCceehhhhccCCcccCC----CCCC
Confidence 20 00001111 478765 6888887443 4333 33 12345565554442 111111 4678
Q ss_pred CCeEeeEEEeecCCCeE
Q 000173 721 GYEFDQLLVLDNESSNL 737 (1935)
Q Consensus 721 G~~l~~vl~~d~~~~~i 737 (1935)
|+.+..+=.++...+++
T Consensus 262 GdiV~ViG~V~~r~g~l 278 (715)
T COG1107 262 GDIVEVIGEVTRRDGRL 278 (715)
T ss_pred CceEEEEEEEeecCCcE
Confidence 99998544455544444
No 376
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.01 E-value=0.045 Score=67.79 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-KFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
|+.+..|++++..|+.. ++++|...|++||...|.+... .+|++.|..|..+|+.++|...|++++..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677777777777777 7777777777777777665311 34777777777777777777777777765
No 377
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=96.00 E-value=0.014 Score=77.78 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=58.1
Q ss_pred CCC--cEEEeEEEEEeeceEEEEEecCceeEEeeccccCc--c-cc--cC-----c--ccccCCCCEEEEEEEEEecCCC
Q 000173 1467 HVG--DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--D-HV--DN-----I--ETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1467 ~~G--~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~--~-~~--~~-----~--~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
++| +.+.|.|..+++||+||+|...++.|++|++.+.+ + +. .+ + ...|+.||.|+++|.++|.+++
T Consensus 554 ~~g~~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~ 633 (639)
T TIGR02062 554 KAAKNTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETR 633 (639)
T ss_pred ccCCCcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccC
Confidence 454 58999999999999999998778999999999965 2 21 11 1 1369999999999999999999
Q ss_pred eeEE
Q 000173 1533 RISL 1536 (1935)
Q Consensus 1533 ri~l 1536 (1935)
+|.+
T Consensus 634 ~i~~ 637 (639)
T TIGR02062 634 SIIA 637 (639)
T ss_pred cEee
Confidence 9876
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.98 E-value=0.01 Score=45.79 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
|+.++||.+|++++...|.+.++|..|++++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 56788899999999988988889999988875
No 379
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.88 E-value=0.79 Score=54.35 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=117.9
Q ss_pred HHHHHHHhcccc-chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------C-------CHHHHHHHHHHHHHc
Q 000173 1708 IAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------D-------PKKVHLALLGLYERT 1773 (1935)
Q Consensus 1708 v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~------~-------~~~v~~~l~~i~~~~ 1773 (1935)
...+|+..|..- +-......+.+|++++..+.. ..-|.+++++. | ...++..+++...-.
T Consensus 62 mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~------l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgl 135 (518)
T KOG1941|consen 62 MLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK------LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGL 135 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhH
Confidence 344444444422 222234577888888655441 22234444333 1 126777788888888
Q ss_pred CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC----C----ChHHHHHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR----H----KHIKFISQTAIL 1838 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~----~----~~~~~~~~~a~l 1838 (1935)
+.++++.+.|+.+.+.-.. ...++..++.++-+. ++++|.-+..+|...... . .+....+.+|-.
T Consensus 136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa 215 (518)
T KOG1941|consen 136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA 215 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence 8999999999999876422 245778888888888 999998888887665322 1 122445556666
Q ss_pred HHHcCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1839 EFKNGVADRGRSMFEGILSEY---PKR---TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~al~~~---Pk~---~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+...|..-.|.+..+.+.+.. .++ ..-...++|++...||.|+|-.-||.|..
T Consensus 216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 667888888888888876642 333 23467889999999999999999998875
No 380
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.84 E-value=0.66 Score=54.99 Aligned_cols=241 Identities=13% Similarity=0.046 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1762 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v 1762 (1935)
++++..+...-++.++..+-...+.....+...........+.+.+.-++ ..+++.+.|+.|+++... .++
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls--~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLS--VFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHH--HHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 33344444444555555555444432222211111123333444455556 348899999999988543 299
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcC----CC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCC
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFK----HS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHK 1827 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~----~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~ 1827 (1935)
+..+..+|.+..++++|.-...++..... .. .-+.++++..+..+ ..-.|.+.-+.|.+. -...-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 99999999999999999888888776542 11 22344555555555 666677666666553 32333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHHH--H---cCCHHHHHHHHHHHHhcC--C
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEY---PKRTD---LWSIYLDQEI--R---LGDVDLIRGLFERAISLS--L 1894 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~---Pk~~d---lw~~ya~~e~--k---~g~~e~ar~lferal~~~--~ 1894 (1935)
+...+..||..|...|+.|+|-.-||.++... .+++- +....+.-.. + .+.--+|..+-+|+++.. .
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~I 324 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSI 324 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence 45677889999999999999999999997653 22221 1111111111 1 111133555555655410 1
Q ss_pred Cchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1895 PPKK-MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1895 ~pk~-~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
-.|. ...+.-+...++...|..++-+.-+.||-+.++.
T Consensus 325 G~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 325 GAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred hhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 1111 1124555566777888888888888888887765
No 381
>PRK05054 exoribonuclease II; Provisional
Probab=95.83 E-value=0.022 Score=75.96 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=56.9
Q ss_pred CCEEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCcc---cc--cC------c-ccCccCCCEEEEEEEEeeCCCCeEEE
Q 000173 762 NSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDG---QR--AD------L-SKTYYVGQSVRSNILDVNSETGRITL 828 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~~---~~--~~------~-~~~f~~Gq~V~~~V~~vd~e~~rl~L 828 (1935)
|..+.|.|+.++++|+||++. .++.||+|.+.+.+. +. .+ - ...|++||.|+++|.++|.+++++.+
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~~i~~ 641 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETRSIIA 641 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccCeEEE
Confidence 359999999999999999996 479999999999752 21 11 1 24699999999999999999999987
Q ss_pred ee
Q 000173 829 SL 830 (1935)
Q Consensus 829 Sl 830 (1935)
.+
T Consensus 642 ~~ 643 (644)
T PRK05054 642 RP 643 (644)
T ss_pred EE
Confidence 64
No 382
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.097 Score=57.06 Aligned_cols=75 Identities=17% Similarity=0.133 Sum_probs=50.8
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
|.+.+..+++. ..+.|..-..+||...|... +++.+.|.+|.+...++.|.+-|.+++..+|.+..+.-..+.+.
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 44455555666 66777777777777777663 66677777777777777777777777777777766555544443
No 383
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=95.76 E-value=0.026 Score=62.43 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccc-cc-----------cCCCCCCCCCCEEEEEEEEE--e--CCe
Q 000173 497 KPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EI-----------VKPGKKFKVGAELVFRVLGV--K--SKR 560 (1935)
Q Consensus 497 ~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~-~~-----------~~p~~~fkvG~~v~~rVL~v--~--~~~ 560 (1935)
-.|+++.|.|++++++|++|+++ .+++|||.+.|.+- .. .+-+..++.|+.|++||..+ + .-.
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~G-p~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~ 158 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAG-PLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLF 158 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEee-CeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcE
Confidence 45999999999999999999996 78899999988632 11 01134688999999999998 2 235
Q ss_pred EEEEEecc
Q 000173 561 ITVTHKKT 568 (1935)
Q Consensus 561 i~ltlK~~ 568 (1935)
...|+|.-
T Consensus 159 ~i~T~~~~ 166 (176)
T PTZ00162 159 AIATINSD 166 (176)
T ss_pred EEEEecCC
Confidence 66677754
No 384
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.76 E-value=1.8 Score=57.24 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=134.8
Q ss_pred HHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHcC
Q 000173 1697 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-D-PKKVHLALLGLYERTE 1774 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~-~-~~~v~~~l~~i~~~~~ 1774 (1935)
+..+++.+|..-.++.++..|... ...+.-+|.- .++|.. +.|..+++ |+..- + .......+-.+|.+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~---~a~vLkaLsl--~r~gk~--~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL---YAKVLKALSL--FRLGKG--DEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH---HHHHHHHHHH--HHhcCc--hhHHHHHh-hhccCCCCchHHHHHHHHHHHHHh
Confidence 345677888888888888877422 2233334333 466643 55664444 33322 2 2356666777999999
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---------
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV--------- 1844 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~--------- 1844 (1935)
++++|..+|++++.+||. .+..+.|-..+.+. .+.+-+++--+.-+.+|++.+ -+|....-.....-.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y-yfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY-YFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc-hHHHHHHHHHHhccCCcccccchh
Confidence 999999999999999997 77666666666666 554444444444457788764 566655544432222
Q ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v 1922 (1935)
..-|+.++++.+....+ ...=..-|......+|++++|..++.+-+...+++-+. .+-++-+++....+...+.-++
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~-~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL-YLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhcChHHHHHH
Confidence 34577788887766522 12224556677778889999999986666545555444 3444555555555555544433
Q ss_pred HHH
Q 000173 1923 KQK 1925 (1935)
Q Consensus 1923 ~~r 1925 (1935)
..|
T Consensus 249 ~~~ 251 (932)
T KOG2053|consen 249 SSR 251 (932)
T ss_pred HHH
Confidence 333
No 385
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=95.76 E-value=0.0096 Score=78.73 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=72.8
Q ss_pred ccCCCCCEEEEEEEEEeece---EEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1374 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G---~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
+.+.+|.+|.+.|++|+..- +-|.+..|++|+++.+++|+..+.+|...+++||.|.|+|+++|.++-.+.||+|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 34789999999999997654 567899999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 000173 1451 DSR 1453 (1935)
Q Consensus 1451 ~~~ 1453 (1935)
...
T Consensus 1061 dlk 1063 (1299)
T KOG1856|consen 1061 DLK 1063 (1299)
T ss_pred Hhh
Confidence 754
No 386
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=95.72 E-value=0.033 Score=67.71 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=75.9
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEecccccc-----hhhHHhhhhhcCCCcEEEEEEEEEec-ceEEEEEcCCeEEEec
Q 000173 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEK-HGCFVRFYNGVQGFAP 614 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~-~~~i~ltlK~~l~~~-----~~~~~~~~~~~~~G~~~~g~V~~i~~-~G~~V~~~~~v~g~vp 614 (1935)
.+++|+.+..-+---+ .+...-|.|+.+... ...++..|.+ +.|+++.|+|.++.. .++||++ |++.|++|
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5889999987553222 223333444444221 1122333433 579999999999986 4699999 68999999
Q ss_pred CcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC---EEEEEEee
Q 000173 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFMM 656 (1935)
Q Consensus 615 ~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~---ri~lS~k~ 656 (1935)
.++.. |.+.|++|+.++|.|.+++...+ .+.||...
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~ 206 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTS 206 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCC
Confidence 99884 56789999999999999998765 78888743
No 387
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.71 E-value=0.039 Score=49.80 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=36.4
Q ss_pred CCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEe
Q 000173 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k 655 (1935)
.|++...+|..+.++|+|++..++-.-|+|.+++. ..+++|+.|.|.|.. |. ++|+.+|++
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~-~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DK-EGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--T-TS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CC-CCCEEEecC
Confidence 37888899999999999999877799999999985 247899999999875 44 458888864
No 388
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.71 E-value=0.021 Score=71.60 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=53.1
Q ss_pred CCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCcc------------cccCcccccCCCCEEEEEEEEEe
Q 000173 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVD 1528 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~~------------~~~~~~~~~~~Gd~V~~~Il~id 1528 (1935)
...+|++|.|+|+++.++ |+||.|+. +-.||+|++++.+. ...++.+.+++||.|.|.|++-.
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~ 98 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEP 98 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCC
Confidence 457899999999999999 99999975 78999999998653 23345668999999999999843
No 389
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.71 E-value=0.13 Score=53.48 Aligned_cols=106 Identities=15% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHHHHH-HhCCCCChHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCC
Q 000173 1813 QAVVQRAL-LSLPRHKHIKFISQTAILEFK---NG-VADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1813 ~~ll~ral-k~~p~~~~~~~~~~~a~le~~---~g-~~e~Ar~ife~al~~~---------Pk~~dlw~~ya~~e~k~g~ 1878 (1935)
++.|+..+ .....+....+|..|..+... .| .-..-..++|++++.+ |.-..+|..|+++.
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~----- 79 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC----- 79 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-----
Confidence 44444444 323333335566666555442 22 2223345555555443 33345899999874
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1879 VDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQK 1925 (1935)
Q Consensus 1879 ~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~r 1925 (1935)
+..+.+|..+.....-.+.+ .+|..|..+.+..|+...|..||++
T Consensus 80 -~dp~~if~~L~~~~IG~~~A-lfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 -DEPRELFQFLYSKGIGTKLA-LFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred -CCHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 33678888888877776777 7999999999999999999999875
No 390
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.16 Score=57.53 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCccc
Q 000173 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v---~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~ 618 (1935)
.|..|+++.+.|... ..+.+.+ - |.-..|-. ++|+++.|.|..+...|..|++.+...|++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~V--I--------pl~g~YiP-~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRV--I--------PLEGRYIP-EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEE--E--------eCCCcccC-CCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 456778888877766 2233221 1 11122321 57999999999999999999998889999999999
Q ss_pred CCCC----CCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEee
Q 000173 619 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1935)
Q Consensus 619 ~~~~----~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~ 656 (1935)
-... ..+.+..|.+|+.|.|+|..+|+. ....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~-~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDRD-GEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccCC-CceEEEeec
Confidence 3322 246667899999999999999964 677787754
No 391
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.47 Score=54.49 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=101.6
Q ss_pred HHHHHHH-HHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1727 IWVAYFN-LENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1727 lW~ayl~-le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
+|.-... ++..-+. .+.|.....+ ....+.+.--..|+.+..+++.|....++|.... .-.+...+|+.+.
T Consensus 109 i~~l~aa~i~~~~~~--~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv 180 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGD--FDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWV 180 (299)
T ss_pred HHHHHhhHHhhcCCC--hHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHH
Confidence 5543332 2344443 3555544443 2233444444456677788888888888887654 2222333333333
Q ss_pred Hc-----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1806 KQ-----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1806 ~~-----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
.. +++.|.-+|+.+...+|.. +.+....|.+++.+|++++|..+++.+|..+++.++.....+-.-.-.|...
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~~~T--~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKTPPT--PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcccCCC--hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 22 7888888888888866544 4778888888888999999999999999999998888777777766666554
Q ss_pred H-HHHHHHHHHhcCCCchhH
Q 000173 1881 L-IRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1881 ~-ar~lferal~~~~~pk~~ 1899 (1935)
. ..+...+... ..|+..
T Consensus 259 ~~~~r~l~QLk~--~~p~h~ 276 (299)
T KOG3081|consen 259 EVTERNLSQLKL--SHPEHP 276 (299)
T ss_pred HHHHHHHHHHHh--cCCcch
Confidence 4 3334444333 555543
No 392
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.42 Score=55.10 Aligned_cols=140 Identities=11% Similarity=0.032 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH----HHHc-CHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR----LLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~----l~~~-~~e~A~~ll~ 1817 (1935)
+.|...|++.++..|.. +..+-+++.+.+.+.+..|..+...+.. +..+.....+. .... ++-.++.+.+
T Consensus 61 ~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLve 136 (459)
T KOG4340|consen 61 ALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVE 136 (459)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence 66778888888888775 4444556667778888888777666542 23333222221 1112 4444555443
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1818 RALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1818 ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|...........|.+.++.|++|.|.+-|+.+++...-+.-+-+..+-.+++.++++.|..+...+++
T Consensus 137 ----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 137 ----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred ----hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3465444678889999999999999999999999999888888888888888899999888766555443
No 393
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.088 Score=65.28 Aligned_cols=62 Identities=8% Similarity=-0.071 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV---WLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~v---w~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
..|+.++..|...++|++|...|++++...|++... |++++.+|..+ ++++|.+.|++|+..
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998854 99999999999 999999999999986
No 394
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.49 E-value=0.032 Score=70.08 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcc------------cCCccccCCCCcEEEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1435 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~V~~s~lsd~~------------~~~~~~~f~~G~~V~~kVl~ 1435 (1935)
..+|+++.|+|+++.+. |+||+||.+..||+|++|+.+.+ .++..+.+++||.|.+.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997632 23345568999999998865
No 395
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=2 Score=48.62 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc--CHHHHHHHHHHHHHhCCCCCh----
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLSLPRHKH---- 1828 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~~p~~~~---- 1828 (1935)
+-|....+.|.+. +.++|.+.+++++.+|.+ ..+-+..++.+|... ++++|...|+.|-.-+...+.
T Consensus 75 t~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 75 TTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 4444445555443 666666666666665532 233344556655555 677777777777655433221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHH------HHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL-WSIYLDQ------EIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl-w~~ya~~------e~k~g~~e~ar~lferal~ 1891 (1935)
-+.+++.|++--..+++.+|..+||++.+..-.+.-+ |..-.-| ++-..|.-.++..++.-.+
T Consensus 154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 2566666666667777777777777776665444333 3322211 1223454455555555544
No 396
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.48 E-value=0.94 Score=55.63 Aligned_cols=121 Identities=16% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccc---cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-
Q 000173 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQT-INI---REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-C- 1757 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~---~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~-~- 1757 (1935)
+++....--.+++...|++.+|.++.-+.--. -+. ..+--+-..|..+.-+..+.+.+ ..+.-.|.+|++. +
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y--~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY--QASSVLFLKALRNSCS 315 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH--HHHHHHHHHHHHHHHH
Confidence 55555556667778889999888776542210 000 00111235677777777778844 7788899999962 1
Q ss_pred -------C----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1758 -------D----------PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1758 -------~----------~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
+ ...+.+..+-.|...|+.-.|.+.|.++.+.|..++.+|++++++.+.
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 117777788889999999999999999999999999999999998774
No 397
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.017 Score=64.84 Aligned_cols=90 Identities=24% Similarity=0.315 Sum_probs=76.1
Q ss_pred CCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000173 761 PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~~ 838 (1935)
+++++-+.|.+|.+.|++|.+. |++.|++..|++|..++..++...++|-+=.|.|+.+|.+++=|-||.+...+ .
T Consensus 16 v~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~--e 93 (304)
T KOG2916|consen 16 VEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP--E 93 (304)
T ss_pred cccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH--H
Confidence 5889999999999999999975 79999999999999999999999999999999999999999999999987654 3
Q ss_pred CchhhHHHHHHHHH
Q 000173 839 DASFMQEHFLLEEK 852 (1935)
Q Consensus 839 d~~~i~~~l~~~~~ 852 (1935)
|..-+.+-|...++
T Consensus 94 d~~kC~Er~~ksK~ 107 (304)
T KOG2916|consen 94 DKEKCEERFAKSKL 107 (304)
T ss_pred HHHHHHHHHHHhHH
Confidence 33334444443333
No 398
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.41 E-value=0.018 Score=45.25 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1675 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1707 (1935)
Q Consensus 1675 ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~ 1707 (1935)
|+++|..+|+++.+|.+|+.++...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 399
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.38 E-value=8.1 Score=46.61 Aligned_cols=228 Identities=14% Similarity=0.119 Sum_probs=141.8
Q ss_pred HHcCCHHHHHHHHHHHHHhcccc--chhhHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCC-------------
Q 000173 1697 LSMADVEKARSIAERALQTINIR--EENEKL-NIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDP------------- 1759 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~--ee~Ekl-~lW~ayl~le~~~g-~~~~e~a~~vferAl~~~~~------------- 1759 (1935)
..+|+++.|...+.|+-...+.. +..+.+ .+.+....-....+ .+ +.|...++||..+.+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~--~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKY--EEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 46799999999999988754221 111221 33333333333444 44 8899999999988421
Q ss_pred --HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC-CCChHHHH
Q 000173 1760 --KKVHLALLGLYERTEQN---KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-RHKHIKFI 1832 (1935)
Q Consensus 1760 --~~v~~~l~~i~~~~~~~---~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p-~~~~~~~~ 1832 (1935)
..+...++..|...+.+ ++|.++.+.+-+.+++.+.++.....++.+. +.+.+.+.+.+++...+ ........
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 16667777788776654 4566677777788899999998888888888 99999999999999876 33334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-----Hc---CC---HHHHHHHHHHHHh---cCCCc
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQEI-----RL---GD---VDLIRGLFERAIS---LSLPP 1896 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e~-----k~---g~---~e~ar~lferal~---~~~~p 1896 (1935)
.......... .+..|...+..++.. .|...+ |..-+-+.+ +. .+ ++.+..+++++-. ..+.+
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444444443 345566666666543 344433 544333322 11 12 3344455554332 23444
Q ss_pred hhHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1897 KKMK----FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1897 k~~k----~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+.+. .+|++--..+ +.+++..|..-|+-|+.-
T Consensus 240 ~~~~a~~~LLW~~~~~~~-~~k~y~~A~~w~~~al~~ 275 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHY-KAKNYDEAIEWYELALHS 275 (278)
T ss_pred HHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHh
Confidence 3311 4688766544 578999999999988743
No 400
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.36 E-value=0.11 Score=56.42 Aligned_cols=90 Identities=12% Similarity=-0.021 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG- 1843 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g- 1843 (1935)
++.|++.++....+.|...+.+++++..|++. .+++|..-|+.||..+|... .++..+|..+..++
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 46788888888888888888888888888765 24556677788888888773 77777777776543
Q ss_pred ---C-------HHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1844 ---V-------ADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1844 ---~-------~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+ +++|...|+++....|.+...+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 2 67777788888888898754443
No 401
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=95.32 E-value=0.041 Score=52.44 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCCCEEEEEEEEEeeceEEEEe------------------CCCcEEEEECccCCCcccC--CccccCCCCcEEEEEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIML------------------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSV 1436 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l------------------~~~v~g~V~~s~lsd~~~~--~~~~~f~~G~~V~~kVl~v 1436 (1935)
++|++|.|+|+++++.-++++| .....|.++.+|+-..... ++.+.|++||.|.|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 5899999999999998888754 2345789999987765544 3678999999999999874
No 402
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.24 E-value=0.21 Score=51.83 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFE 1853 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife 1853 (1935)
.++|+.|+.+. +.++++|+-+...-=...+..+|..||.++...|++.+|..+|+
T Consensus 69 LkiWi~ya~~~-----~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 69 LKIWLKYADNC-----DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555531 23445555555444344445666666666666666666666665
No 403
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.19 E-value=2.6 Score=52.43 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKR---- 1862 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~-~Pk~---- 1862 (1935)
......|+.++....+. .++.|...+.++.+..+... .+.+...+|.+....|+.++|...++..+.. ..+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35678899999999999 99999999999988653321 3688999999999999999999999988872 1111
Q ss_pred -----------------------------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1863 -----------------------------TDLWSIYLDQEIRL------GDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1863 -----------------------------~dlw~~ya~~e~k~------g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..++..++.+.... ++.+.+...|..++. +.|...+ .|..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k-~~~~~a 299 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEK-AWHSWA 299 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHH-HHHHHH
Confidence 22466666666666 888999999999998 7777774 777787
Q ss_pred HHHHH
Q 000173 1908 EYEKS 1912 (1935)
Q Consensus 1908 ~~E~~ 1912 (1935)
.+..+
T Consensus 300 ~~~~~ 304 (352)
T PF02259_consen 300 LFNDK 304 (352)
T ss_pred HHHHH
Confidence 76544
No 404
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.16 E-value=0.051 Score=49.09 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=35.9
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE-eCCeEEEEEe
Q 000173 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHK 566 (1935)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v-~~~~i~ltlK 566 (1935)
.|++.+.+|.++++.|++++.+++-+-++|..++. ..+++|++|.+ .++. ..+|+..|+|
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~V-FvY~D~~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEV-FVYLDKEGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEE-EEEE-TTS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEE-EEEECCCCCEEEecC
Confidence 48899999999999999999987799999977653 35899999999 5566 5679988875
No 405
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.13 E-value=4.2 Score=47.22 Aligned_cols=157 Identities=13% Similarity=0.043 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|+.=+.-..+.|++++|.+.|+.+...+| ....+-+.++..+++. +++.|....+|-++.+|.+..+ -|..|.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 4455555666789999999999999999886 4577778888888888 9999999999999999998654 233333
Q ss_pred HH--HH-----HcCCH---HHHHHHHHHHHHhCCCC---HH-------HH-------HHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1837 IL--EF-----KNGVA---DRGRSMFEGILSEYPKR---TD-------LW-------SIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1837 ~l--e~-----~~g~~---e~Ar~ife~al~~~Pk~---~d-------lw-------~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
.. .+ ...|. .+|..-|...++.+|+. .| +- +.-+.++.+.|.+..|..-|+++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 32 22 12233 34566677889999985 11 11 22344556789999999999999
Q ss_pred HhcCCCch--hHHHHHHHHHHHHHHcCCHHHHH
Q 000173 1890 ISLSLPPK--KMKFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1890 l~~~~~pk--~~k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
+.. +|. ....-...|.......|-.+.|.
T Consensus 194 ~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 194 LEN--YPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred Hhc--cccccchHHHHHHHHHHHHHhCChHHHH
Confidence 982 322 22223333444444466544433
No 406
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.02 E-value=0.89 Score=50.52 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
++++|.-.|+|. .+|-..|-..-|+--|..++.+.|..+.++.-++-++... +++.|.+.|...+
T Consensus 61 ~eeRA~l~fERG--------------vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 61 DEERAQLLFERG--------------VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred hHHHHHHHHHhc--------------chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 456666666665 5666777788899999999999999999999999988888 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHH-HHHHHHHHhcCCCch
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD--LWSIYLDQEIRLGDVDLI-RGLFERAISLSLPPK 1897 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d--lw~~ya~~e~k~g~~e~a-r~lferal~~~~~pk 1897 (1935)
...|..+ -+..+.|...+--|++.-|..-|.+--+.+|+++- +|....... . ++..| .++.+|+-. ...
T Consensus 127 ELDp~y~--Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k--~-dP~~A~tnL~qR~~~--~d~- 198 (297)
T COG4785 127 ELDPTYN--YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK--L-DPKQAKTNLKQRAEK--SDK- 198 (297)
T ss_pred ccCCcch--HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh--C-CHHHHHHHHHHHHHh--ccH-
Confidence 9999986 45566666666678999999999999999999754 888755443 3 34444 456777665 432
Q ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLE-YEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1898 ~~k~l~~~yl~-~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
..|-.+|- |. .|.. +.+.+++|+.+..
T Consensus 199 ---e~WG~~iV~~y--Lgki-S~e~l~~~~~a~a 226 (297)
T COG4785 199 ---EQWGWNIVEFY--LGKI-SEETLMERLKADA 226 (297)
T ss_pred ---hhhhHHHHHHH--Hhhc-cHHHHHHHHHhhc
Confidence 45655552 22 2322 2234555555543
No 407
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=94.98 E-value=0.12 Score=49.94 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE-eCCeEEEEEec
Q 000173 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKK 567 (1935)
Q Consensus 496 l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v-~~~~i~ltlK~ 567 (1935)
-.+|++|=|+|+.+......|+|+....|++|..++... ..+....+++|+-|-|||..+ ....+.||+..
T Consensus 4 P~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~~~~eLtc~~ 75 (86)
T cd05790 4 PAKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRDMEPELSCVD 75 (86)
T ss_pred CCCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCCCCeEEEEeC
Confidence 367999999999999999999999888999998776432 223344699999999999999 45678888763
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.96 E-value=0.98 Score=51.46 Aligned_cols=204 Identities=13% Similarity=0.238 Sum_probs=124.8
Q ss_pred CCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhH-HHHHHHHHHHHHHcCC
Q 000173 1669 PRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEK-LNIWVAYFNLENEYGN 1740 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ek-l~lW~ayl~le~~~g~ 1740 (1935)
.+|...|++.+...|.- ..+..+.+.....++++++-.+.|.+.|.-|.. +.-.|+ .|.-+.|+.-..+.+
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~- 122 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD- 122 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH-
Confidence 34556677777666652 344566777788999999999988888763321 122222 355566665433322
Q ss_pred CCHHHHHHHHHHH---HhcCCCHHHHH----HHHHHHHHcCChHHHHHHHHHHHHhcC------------CCHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRA---LQYCDPKKVHL----ALLGLYERTEQNKLADELLYKMIKKFK------------HSCKVWLRRV 1801 (1935)
Q Consensus 1741 ~~~e~a~~vferA---l~~~~~~~v~~----~l~~i~~~~~~~~~A~el~~~~~k~~~------------~~~~vw~~~~ 1801 (1935)
-+.+.|+-. |+-.....+|+ .++.+|...+.|.+...++..+-..+. +-..+|-.-+
T Consensus 123 ----LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 123 ----LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred ----HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 233333333 33223334554 567777666666555555544332221 2345565566
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH--HHHHH
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ----TAILEFKNGVADRGRSMFEGILSEY-----PKRTD--LWSIY 1869 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~----~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d--lw~~y 1869 (1935)
+.|-.+ +..+-..+|++||-.-..-.|+-+.-. =+.++++.|.++.|.+-|-.|+..+ |.|.. -+.++
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 667777 777778899999887655555432222 2346788999999999999999876 55544 37788
Q ss_pred HHHHHHcC
Q 000173 1870 LDQEIRLG 1877 (1935)
Q Consensus 1870 a~~e~k~g 1877 (1935)
+.|+++.|
T Consensus 279 ANMLmkS~ 286 (440)
T KOG1464|consen 279 ANMLMKSG 286 (440)
T ss_pred HHHHHHcC
Confidence 88888753
No 409
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.87 E-value=2.4 Score=53.96 Aligned_cols=151 Identities=17% Similarity=0.071 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH--------Hh--cC-CCHHHHHHHHHHHHHc-CHHHHHHHHHH----------
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMI--------KK--FK-HSCKVWLRRVQRLLKQ-QQEGVQAVVQR---------- 1818 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~--------k~--~~-~~~~vw~~~~~~l~~~-~~e~A~~ll~r---------- 1818 (1935)
++|-..+++|++..++++|.++|.+.- .+ || .-.++-..++..+.+. +++.|...|-.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 778888889999999999999988631 22 23 1233334566666665 66666543322
Q ss_pred ---------HHHhCC----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1819 ---------ALLSLP----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1819 ---------alk~~p----~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
|+..+. +......|-..|+-|...|+++.|..+|-.+ ++....++|+-+.|..+.|..+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~--------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA--------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc--------chhHHHHHHHhccccHHHHHHH
Confidence 221111 0111134555677777788999999998775 6777788888899998888887
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVK 1923 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~ 1923 (1935)
-+.... |.....+|..-.+-..++|.+.+|+++|
T Consensus 814 a~e~~~----~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 814 AEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHhcC----chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 776432 2222233333333334567666665554
No 410
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.85 E-value=0.068 Score=50.72 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~---~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.++..+|.+++..|++++|.+.|+++++. .+.+ ...+..++..+...|++++|..+|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57778888888888888888888888754 3322 23577778888888888888888888876
No 411
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=94.75 E-value=0.22 Score=54.15 Aligned_cols=104 Identities=19% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCCCCCEEEEEEEEE---eCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcC----------C
Q 000173 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYN----------G 608 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v---~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~----------~ 608 (1935)
.|..|..|.|-+..+ +.+....+.++... .+.-.++|+++-|.|+++....+.|++.+ -
T Consensus 26 t~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~--------~~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~ 97 (188)
T COG1096 26 TYEEGGEIRAAATGVVRRDDKNRVISVKPGKK--------TPPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATS 97 (188)
T ss_pred eEeECCEEEEeecccEEEcccceEEEeccCCC--------CCCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCC
Confidence 455566666666555 44555666554322 12224689999999999999999988752 1
Q ss_pred eEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEee
Q 000173 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1935)
Q Consensus 609 v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~ 656 (1935)
..|-+|.|+++.....+.++.|++|+.|+++|++.- ..+.||.+-
T Consensus 98 ~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~Lst~~ 142 (188)
T COG1096 98 GAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQLSTKG 142 (188)
T ss_pred ceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEEEecC
Confidence 457889999987777788899999999999999863 456677653
No 412
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.74 E-value=0.31 Score=53.18 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG----------VADRGRSMFEGILSEYPKRTDLWSIYLDQEI--- 1874 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g----------~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~--- 1874 (1935)
-++.|++.++.....+|.+ .+.+.+||..+..+. .+++|..=|+.+|..+|+..+....++..+.
T Consensus 6 ~FE~ark~aea~y~~nP~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3789999999999999988 588899888766432 3677888888999999999886444444443
Q ss_pred -HcCCH-------HHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1875 -RLGDV-------DLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1875 -k~g~~-------e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
-..+. ++|...|++|+. ..|.+. +|++-+++-
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne--~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNE--LYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-H--HHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcH--HHHHHHHHH
Confidence 33444 445555555555 444443 555555543
No 413
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.70 E-value=1.3 Score=56.39 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=94.8
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH-HH---HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000173 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NI---WVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1935)
Q Consensus 1678 ll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~l---W~ayl~le~~~g~~~~e~a~~vferA 1753 (1935)
.+..+|. +.+|.-++.+.+..-+++.|...|-|+-.-....- -.|+ .+ =+..+..-.-||++ |+|+++|-.|
T Consensus 685 fiEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~f--eeaek~yld~ 760 (1189)
T KOG2041|consen 685 FIEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEF--EEAEKLYLDA 760 (1189)
T ss_pred HHhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcch--hHhhhhhhcc
Confidence 3345665 79999999999999999999988887653211100 0000 00 01222233346754 7777777555
Q ss_pred HhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1754 LQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1754 l~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
=...-.-.+ +.+.|++-...+++...-.-. ......|.+.+..+... ..+.|+++|..+-.
T Consensus 761 drrDLAiel-------r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 761 DRRDLAIEL-------RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred chhhhhHHH-------HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 222111122 222233333333332211100 12345666677766666 77777776665411
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
...++..++...+++. +|.+....|.+..+.-..++|..+-|.-++|-..|-|
T Consensus 825 -~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred -hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1223333333333332 3444455566666666666666666666665555543
No 414
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.67 E-value=0.12 Score=63.69 Aligned_cols=107 Identities=13% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEEEE--Ee-CCeEEEEEecccccc----hh-hHHhhhhhcCCCcEEEEEEEEEecceEEEEEc---C--C
Q 000173 542 KFKVGAELVFRVLG--VK-SKRITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 608 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~--v~-~~~i~ltlK~~l~~~----~~-~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~---~--~ 608 (1935)
.+++|+.|...|-- .+ .+...-|.|+.+... .. -+...|.+ +.|.++.|+|.++...+++|++. | +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 58899999876631 01 122222333322221 11 22334543 57999999999999999999983 4 3
Q ss_pred eEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCC---CEEEEEEe
Q 000173 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 655 (1935)
Q Consensus 609 v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~---~ri~lS~k 655 (1935)
+.|++|.++. -|.+.|++|+.++|.|.+|+... -.+.||..
T Consensus 181 ~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 9999999998 35678999999999999998763 46888864
No 415
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=1.3 Score=52.03 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=89.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++.+++...|..++...|+++.+-+.|+..++..|+.+.|..++... |......+.....+.+.+..+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~~--~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAAT--P 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhcC--C
Confidence 455888999999999999999999999999999999999999988754 3322222222222345555555431 1
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 000173 1745 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~ 1790 (1935)
. -..+++.+..+|. .+.-+.++..|...|+++.|.+.+-.++++.
T Consensus 221 ~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 E-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred C-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 2346677777775 5999999999999999999999998888775
No 416
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=94.62 E-value=0.079 Score=70.71 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCEEEEEEEEEecCeEEEEE-CCCeEEEeeCCccCc--c-c--ccCc-------ccCccCCCEEEEEEEEeeCCCCeEEE
Q 000173 762 NSVVHGYVCNIIETGCFVRF-LGRLTGFAPRSKAVD--G-Q--RADL-------SKTYYVGQSVRSNILDVNSETGRITL 828 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f-~~gl~Glv~~s~ls~--~-~--~~~~-------~~~f~~Gq~V~~~V~~vd~e~~rl~L 828 (1935)
|..+.|.|+.++++|+||++ .+|+.||+|.+.+.+ + + ..+. ...|++||.|+++|.++|.+++++.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 45899999999999999998 568999999999975 2 2 1111 12599999999999999999988865
Q ss_pred e
Q 000173 829 S 829 (1935)
Q Consensus 829 S 829 (1935)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
No 417
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.51 E-value=0.54 Score=50.65 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=76.1
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
.....++...+.+.+++++..|... ..-|.. ..+..|.... ..++..++..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~-----------~~r~~l~~~~--------~~~~~~l~~~~~~~ 75 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVE-----------PERERLRELY--------LDALERLAEALLEA 75 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHH-----------HHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHH-----------HHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 3456678888889999998877321 112332 2233333332 35677788888899
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|++++|..++++++..+|-+..+|..++..+...|+...|...|+++..
T Consensus 76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765
No 418
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=1.7 Score=51.16 Aligned_cols=145 Identities=15% Similarity=0.046 Sum_probs=103.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHH---HHHHHHHcCC
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQ---TAILEFKNGV 1844 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~---~a~le~~~g~ 1844 (1935)
-....+++.+|..+|..++...+.+..+-+.|+.+++.. +.+.|+.+|... |...+-+-|.. ...++.+...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l----P~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL----PLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC----cccchhhHHHHHHHHHHHHHHHhc
Confidence 445788999999999999998888899999999999999 999888887664 33322233333 2233334333
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
..+.- -+++.+..+|++.++-+.+++++...|+.+.|...+-..+..+....+- ..-+.++++-.-.|..+-+
T Consensus 219 ~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~-~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 219 TPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG-EARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc-HHHHHHHHHHHhcCCCCHH
Confidence 33332 3566678899999999999999999999999988887777754444433 4567777777777744433
No 419
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.14 E-value=0.13 Score=48.82 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIK 1788 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k 1788 (1935)
.+|..++.+|...+++++|.+.|++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
No 420
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.11 E-value=0.074 Score=40.64 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHh
Q 000173 1879 VDLIRGLFERAIS 1891 (1935)
Q Consensus 1879 ~e~ar~lferal~ 1891 (1935)
+++||.+|+|.+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 421
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=2.5 Score=47.88 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc
Q 000173 1742 PEEAVVKVFQRALQYCDP-------KKVHLALLGLYERT-EQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~ 1807 (1935)
+.++|...+++|+++.-. -+.|+.++.+|+.- .+++.|...|+.+-.-|.. .-+.++..+.+-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 347788888888876532 16688899999876 8999999999999887742 244566677766666
Q ss_pred -CHHHHHHHHHHHHHhCCCCCh----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1808 -QQEGVQAVVQRALLSLPRHKH----I-KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~~----~-~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
++.+|.++|+.....--.+.. + ..+.+.+..++-..|.-.++..+|+....+|...+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 899999999887665433321 1 23444455556668999999999999999998665
No 422
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.05 E-value=1.1 Score=51.02 Aligned_cols=151 Identities=15% Similarity=0.191 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQE 1810 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e 1810 (1935)
.++|..-|++.++.-+.. .....++.++.+.+++++..+.|..++.-.. .+.+.-.....+.... +.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 366777777777766543 6666777888888999888888888774321 2344444555554444 667
Q ss_pred HHHHHHHHHHHhCCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HH---HHHHHHHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKR---------TD---LWSIYLDQEI 1874 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~----~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---------~d---lw~~ya~~e~ 1874 (1935)
--...|+..|..+...+.-.+| .+++.++|..+++.+-..++.++-+++.+. .. ++..-++|+.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 7777788777766443333455 468889999999999999998888776432 22 3444457788
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q 000173 1875 RLGDVDLIRGLFERAISLS 1893 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~~~ 1893 (1935)
.+.+-.....+|+++++.+
T Consensus 203 ~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIK 221 (440)
T ss_pred hhcccHHHHHHHHHHHHhh
Confidence 8888888999999999743
No 423
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=1.7 Score=51.16 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=115.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHH-HHHHH-HHHcCCCCH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV-AYFNL-ENEYGNPPE 1743 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~-ayl~l-e~~~g~~~~ 1743 (1935)
+.-+++....+++|...|.+...|..--..+.-+|+.+.-+..+++.+-.-+ ++.- ...++ .+..| ....|- .
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp-~~sYv~GmyaFgL~E~g~--y 191 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLP-CYSYVHGMYAFGLEECGI--Y 191 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCc-HHHHHHHHHHhhHHHhcc--c
Confidence 4588999999999999999999998888888889999999988888774322 2221 22222 22233 355673 4
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~----~~vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+.|++..+|||+.|+.. =...+.+.+++..+++.++.+...+.-....++ ..-|-..+.|+++. .++.|.++|.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 89999999999999876 556678889999999999999888765544322 33466778888888 9999999997
Q ss_pred HH-HHhCCC
Q 000173 1818 RA-LLSLPR 1825 (1935)
Q Consensus 1818 ra-lk~~p~ 1825 (1935)
+- ++.+..
T Consensus 272 ~ei~k~l~k 280 (491)
T KOG2610|consen 272 REIWKRLEK 280 (491)
T ss_pred HHHHHHhhc
Confidence 64 444433
No 424
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=93.99 E-value=0.059 Score=41.13 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1844 VADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1844 ~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.+++||.+||+.+...|. ...|..||.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 579999999999999977 689999999974
No 425
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.77 E-value=0.082 Score=41.62 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
|+++|+.+|++.+.|+.|+.++...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67777777777777777777777777777765
No 426
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=93.77 E-value=0.16 Score=69.06 Aligned_cols=75 Identities=28% Similarity=0.346 Sum_probs=63.2
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcc-cCCc----------cccCCCCcEEEEEEEEEeCCCC
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VESP----------EKEFPIGKLVAGRVLSVEPLSK 1441 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~-v~g~V~~s~lsd~~-~~~~----------~~~f~~G~~V~~kVl~vd~~~~ 1441 (1935)
-.-.+|+...|+|.+|+.+|+||.|... ++|+||++.|.+.| .-++ ...|+.|+.|+++|++++...+
T Consensus 618 m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~~ 697 (706)
T COG0557 618 MKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDER 697 (706)
T ss_pred HHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEccccc
Confidence 3456899999999999999999999765 99999999999643 3232 2368999999999999999899
Q ss_pred EEEEEEe
Q 000173 1442 RVEVTLK 1448 (1935)
Q Consensus 1442 ri~lSlk 1448 (1935)
++.+++-
T Consensus 698 ~i~~~~v 704 (706)
T COG0557 698 KIDFELV 704 (706)
T ss_pred ceEEEec
Confidence 9988764
No 427
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.54 E-value=2.5 Score=54.84 Aligned_cols=162 Identities=16% Similarity=0.106 Sum_probs=94.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcC-CCHH-----H-HHHHHHHHH-H---c-CHHHHHHHHHHHHHhCCCCChHHHHHH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFK-HSCK-----V-WLRRVQRLL-K---Q-QQEGVQAVVQRALLSLPRHKHIKFISQ 1834 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~-~~~~-----v-w~~~~~~l~-~---~-~~e~A~~ll~ralk~~p~~~~~~~~~~ 1834 (1935)
+++.--.|+-+.+.+++.++.+... ..+- + |+.....+. . . ..+.|.++++.+.+.+|+. .-....
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s--~lfl~~ 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS--ALFLFF 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc--HHHHHH
Confidence 3344456777788888877765221 1111 1 111111111 1 2 6677888888888888877 244455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEY---PKRTD-LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~---Pk~~d-lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
-|+++...|++++|...|++++... |.-.+ .+..++..++-+.++++|...|.+.+. ...+.++ .+........
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~-~s~WSka-~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK-ESKWSKA-FYAYLAAACL 350 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh-ccccHHH-HHHHHHHHHH
Confidence 5667778888888888888877422 22222 245555566677888888888888887 3333444 1211112234
Q ss_pred HHcCCH-------HHHHHHHHHHHHHHHh
Q 000173 1911 KSVGEE-------ERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1911 ~~~G~~-------e~a~~v~~rAle~v~~ 1932 (1935)
...|+. ++|..+|.++-.+..+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~~k 379 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKLKQK 379 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHHHhh
Confidence 446666 6666666666666654
No 428
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.52 E-value=4.1 Score=51.11 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=103.5
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChH
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1777 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~ 1777 (1935)
+..+..+-.+.+.+||+..|. . =-+|+-|...... +..+++++|++|++..... .+..+..
T Consensus 180 RERnp~aRIkaA~eALei~pd-----C---AdAYILLAEEeA~-Ti~Eae~l~rqAvkAgE~~----------lg~s~~~ 240 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPD-----C---ADAYILLAEEEAS-TIVEAEELLRQAVKAGEAS----------LGKSQFL 240 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhh-----h---hHHHhhccccccc-CHHHHHHHHHHHHHHHHHh----------hchhhhh
Confidence 345666667788888864431 1 1244444332222 5688999999998765321 0000000
Q ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1778 LADELLYKMIKKFKHS--CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEG 1854 (1935)
Q Consensus 1778 ~A~el~~~~~k~~~~~--~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~ 1854 (1935)
....-+......-... .-+-.+++.++.+. +.++|.+.|..+++-+|...+..+...+...++..+.+.+++.++.+
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0000010111110111 22223566666666 88888888888888888766678888888888888888888888888
Q ss_pred HHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCchhH
Q 000173 1855 ILSE-YPKRTDLWSIYLDQEIR-LGD---------------VDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1855 al~~-~Pk~~dlw~~ya~~e~k-~g~---------------~e~ar~lferal~~~~~pk~~ 1899 (1935)
.=.. .|+...+.+.-+-+..+ -+| ...|...+.||++ .+|.-.
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp 380 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVP 380 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCc
Confidence 6322 35655544433443332 122 1236678899998 555554
No 429
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.47 E-value=4 Score=51.23 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
-+-..+|....+.|+.++|.++|..+++.+|. ...+...++..+...+.+..+..++.+-=. ..-|+.+-.-|.+.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchHHHHHHHHH
Confidence 34456777788999999999999999999886 344788888888999999999999998543 223455534466655
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGE---------------EERIEYVKQKAMEY 1929 (1935)
Q Consensus 1908 ~~E~~~G~---------------~e~a~~v~~rAle~ 1929 (1935)
---+.-|| ...|.+...||.++
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 33233333 22345667777665
No 430
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.40 E-value=2.1 Score=54.52 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|-..++-|...++|+.|.++|.++- .+...+.+|-+. +.+.|.++-+.+ ......+.+|+.-|+-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhH
Confidence 334455666777788888888886653 112222333344 566665554443 33333356677667766
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
-++|.+.+|.++|-.+ -.|. ..++|+-+.|..+....+.++ ..+..+..-.+.+..-.+..|+.+.|
T Consensus 835 dehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred HhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHhccChhHH
Confidence 6778777777766432 1222 224566666766666666655 44455545556666555556777777
Q ss_pred HHHHHHHHHHH
Q 000173 1920 EYVKQKAMEYV 1930 (1935)
Q Consensus 1920 ~~v~~rAle~v 1930 (1935)
+.-|-+|-+|-
T Consensus 902 e~~flea~d~k 912 (1636)
T KOG3616|consen 902 EEHFLEAGDFK 912 (1636)
T ss_pred HHHHHhhhhHH
Confidence 77776666553
No 431
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=93.31 E-value=0.19 Score=62.15 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCcEEEEEEEeeecceEEEEe----cCCcceecccCCCCCCCCCCcCCCCcEEEEEEEEEcCC---CcEEEEccCccccc
Q 000173 232 EGMVLTAYVKSIEDHGYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT---RKVVYLSSDPDTVS 304 (1935)
Q Consensus 232 ~g~~l~~~V~svedhG~ild~----Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~~~~~~---~~~v~ls~~~~~~~ 304 (1935)
.|.+++|.|..++.++++||+ |-.++.|+||+++.-+.. .|++|+.+.|.|..|... |-.+.||.....+-
T Consensus 152 ~GeIV~G~V~r~e~~~viv~l~~~~g~~~~EaiLP~~Eqip~E--~y~~Gdrika~i~~V~~~~~kGpqIilSRt~p~lv 229 (449)
T PRK12329 152 EDTVLTARVLRFERQSVIMAVSSGFGQPEVEAELPKREQLPND--NYRANATFKVFLKEVSEGPRRGPQLFVSRANAGLV 229 (449)
T ss_pred cCcEEEEEEEEEcCCCEEEEecccCCCcceEEEecHHHcCCCC--cCCCCCEEEEEEEEeecCCCCCCEEEEEcCCHHHH
Confidence 699999999999999999998 533589999999966566 999999999999999553 56788887555554
No 432
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.29 E-value=0.2 Score=39.00 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.+|..+|.+++..|++++|+..|+++++.+|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567788888888888888888888888888764
No 433
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=3 Score=47.87 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CC---HHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC----DP---KKV 1762 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~----~~---~~v 1762 (1935)
..|+.+++-.+++.-....+...++..|.. +-.+-.+++.+..++| +++.|...|++.-+.+ .- ..+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~----~p~L~s~Lgr~~MQ~G--D~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ----EPQLLSGLGRISMQIG--DIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcc----cHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 456677778888888888888888754421 2356778888889999 6788888888554332 21 267
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+.+.+.+|.-++++..|...|.+++...+.++..-.+-|.+++.. +..+|.+.++.++...|..
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 777788888888888888888888887777777777777777777 8888888888888888875
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.24 E-value=10 Score=55.74 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHH
Q 000173 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE--ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKK 1761 (1935)
Q Consensus 1684 ~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e--e~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~ 1761 (1935)
++++.|.+-+..--...++.+-.-.++|++-....+. ...-.+.|+.++.+....| ..+.|....-.|.+.. ..+
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG--~~q~A~nall~A~e~r-~~~ 1703 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG--HLQRAQNALLNAKESR-LPE 1703 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc--cHHHHHHHHHhhhhcc-cch
Confidence 4668898877664444445555556667665553321 1122379999999999999 5588887777776665 559
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc-CC----------------CHHHHHHHHHHHHHc---CHHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKF-KH----------------SCKVWLRRVQRLLKQ---QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~----------------~~~vw~~~~~~l~~~---~~e~A~~ll~ralk 1821 (1935)
++...|..+++.|+...|...++..+.++ ++ ..++.+.++.|.... ..++...+|+.+..
T Consensus 1704 i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~a 1783 (2382)
T KOG0890|consen 1704 IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKA 1783 (2382)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999998654 43 133456666766666 66778899999999
Q ss_pred hCCCCC--hHHHHHHHHHHHH--------HcCCHHH---HHHHHHHHHHh--------CCCCHHHHHHHHHHHH------
Q 000173 1822 SLPRHK--HIKFISQTAILEF--------KNGVADR---GRSMFEGILSE--------YPKRTDLWSIYLDQEI------ 1874 (1935)
Q Consensus 1822 ~~p~~~--~~~~~~~~a~le~--------~~g~~e~---Ar~ife~al~~--------~Pk~~dlw~~ya~~e~------ 1874 (1935)
.+|... |..+-..|..++. ++|++.. |..-|.+++.. .|+=..+|..|+.-..
T Consensus 1784 il~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~ 1863 (2382)
T KOG0890|consen 1784 ILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAP 1863 (2382)
T ss_pred HcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCC
Confidence 999543 2222222444443 3456666 44444566543 4555678988644332
Q ss_pred ----HcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH--cCCHHHHHHH
Q 000173 1875 ----RLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS--VGEEERIEYV 1922 (1935)
Q Consensus 1875 ----k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~--~G~~e~a~~v 1922 (1935)
..++.+..-.+.++++. .+||- .|+..|-++-.+ |-+.+-+.-+
T Consensus 1864 r~ei~s~~~~~in~~i~~~~~-~lp~Y---~f~ta~sQLlSRicH~~~dV~~vl 1913 (2382)
T KOG0890|consen 1864 RGEIVSKNLKLINSLIEEALE-HLPTY---QFYTAYSQLLSRICHPNQDVARVL 1913 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-hCcch---HHHHHHHHHHHHHcCCchHHHHHH
Confidence 22334445556666666 45542 355666666544 4444443333
No 435
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=3.8 Score=46.74 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH------HHHHHHHc-CHHHHHHHHHHHHHhCCCCCh---H-
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR------RVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---I- 1829 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~------~~~~l~~~-~~e~A~~ll~ralk~~p~~~~---~- 1829 (1935)
.+|.+.+..|..+.++++|...+.++.+-+.++...|.. .+-.+.+. .+.++..+|++|....-.+-. .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 666677788888999999999999998887766655532 22222233 778888888888765432211 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~----~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
.+.-+.|. ..++-+|+.|.++|++++..... | .+++......+.+...+++|-..|.+
T Consensus 112 maleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 112 MALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 22223332 34567899999999999877533 2 23566667777777777776655554
No 436
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.17 E-value=0.31 Score=57.01 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=89.2
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
..+.-|+++ ++++|...|.+++...|.+. -++.+.|..|++...+..|..-.+.++..+-.....|..-+..-..+|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456678888 99999999999999998763 788899999999999999999999999887666667888788888899
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
...+|..-+|++|. +-|+.. .+-+.|.++
T Consensus 180 ~~~EAKkD~E~vL~--LEP~~~-ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLA--LEPKNI-ELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHh--hCcccH-HHHHHHHHh
Confidence 99999999999999 777765 466666553
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.03 E-value=0.16 Score=38.89 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1775 QNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
+.+.|+.+|+++++.++.+..+|..|+.++.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 4566677777777777777777777776553
No 438
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=10 Score=43.73 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC----CCChHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP----RHKHIKFISQT 1835 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p----~~~~~~~~~~~ 1835 (1935)
+.+.|++++.-.+.|.-...+|++.++++ +..+.+-..++..-++- +.+.|..+|++.-+... ......+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33445566667788888999999999988 56677777888888887 99999988886544321 12224677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|.++.-.+++..|...|.+++..+|.+.-..+.-|-..+-.|+...|....+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888888999999999999999999888777777777778888899999999887
No 439
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.86 E-value=7.2 Score=48.49 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh-CCCC--------
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS-LPRH-------- 1826 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~----~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~-~p~~-------- 1826 (1935)
..|+.++.+..+.|.++.|...+.++....+ ..+.+.+.++.++... +..+|...++..+.. +...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 8899999999999999999999999887541 2578888899999888 888898888887771 1111
Q ss_pred -----------------------ChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1827 -----------------------KHIKFISQTAILEFKN------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1827 -----------------------~~~~~~~~~a~le~~~------g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
...+++..+|.+.... +..+.+...|..+++.+|.....|..++.++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 227 LKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 1136788888888877 8899999999999999999999999999988754
No 440
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.75 E-value=3.3 Score=53.79 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHhcCCCH--------HHHHHHHH-HHH---HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1742 PEEAVVKVFQRALQYCDPK--------KVHLALLG-LYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~~--------~v~~~l~~-i~~---~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
+.+...+.+.++.+...-. -.|+..+. ++- .....+.|.+++..+.++||++.-..+..++++... +
T Consensus 203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~ 282 (468)
T PF10300_consen 203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN 282 (468)
T ss_pred cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 5678888888888755432 11222221 111 345678999999999999997665555666666666 9
Q ss_pred HHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCH-----
Q 000173 1809 QEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD--QEIRLGDV----- 1879 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~--~e~k~g~~----- 1879 (1935)
+++|.+.|++|+..-..-+ +.-.+..+|..+.-+.++++|...|.++++...-. ..++.|+. .+...++.
T Consensus 283 ~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~a~c~~~l~~~~~~~~ 361 (468)
T PF10300_consen 283 LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLAAACLLMLGREEEAKE 361 (468)
T ss_pred HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHhhccchhhhh
Confidence 9999999999985322211 12456667777788999999999999999876553 55555555 44456777
Q ss_pred --HHHHHHHHHHHh
Q 000173 1880 --DLIRGLFERAIS 1891 (1935)
Q Consensus 1880 --e~ar~lferal~ 1891 (1935)
++|..+|.++-.
T Consensus 362 ~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 362 HKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHH
Confidence 888889988765
No 441
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.31 E-value=9.1 Score=47.50 Aligned_cols=174 Identities=14% Similarity=0.064 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcCCC--
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---YGNPPEEAVVKVFQRALQYCDP-- 1759 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~---~g~~~~e~a~~vferAl~~~~~-- 1759 (1935)
+++.-++++-.|-...+++.-.++.+..- .+|.-.-.+..++-..|+-..++ -| +.+.|.+++..++.....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~g--dre~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPG--DREKALQILLPVLESDENPD 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCC--CHHHHHHHHHHHHhccCCCC
Confidence 56667778878888889999999887655 45433333345677778777777 77 559999999997766543
Q ss_pred HHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHH---HHHHHH---HHHH-H
Q 000173 1760 KKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQE---GVQAVV---QRAL-L 1821 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~---------~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e---~A~~ll---~ral-k 1821 (1935)
.++|--++.+|.+ ....++|.+.|.++....+ +.-.=++++..+.-. +++ +.+++- ...+ +
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 3667777766642 1236777777777776542 111113555544443 222 222222 1111 1
Q ss_pred --hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1822 --SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1822 --~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
........-.+..++.+..-.|+++.|.+.++++++..|..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 11112212233444555556778888888888887776554
No 442
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.17 E-value=1.1 Score=51.72 Aligned_cols=168 Identities=16% Similarity=0.099 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
+.|.++...-.+.+|. .--...++-+|....++..|-+.|++++..+|....--+-+++.+.+. .+..|..+...+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 5566666666666673 466667778999999999999999999999998888888889988888 88888887766542
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~P--k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
. | .-+-.....-+...+..+|..-+|.+.++. | ...+..+..+-+.++.|+++.|..-|..|+. ..-=+.
T Consensus 107 ~-~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkFqaAlq--vsGyqp 178 (459)
T KOG4340|consen 107 N-P-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ--VSGYQP 178 (459)
T ss_pred C-H-HHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHHHHHHh--hcCCCc
Confidence 2 1 112244555555667889999999998874 5 4677888889999999999999999999998 332222
Q ss_pred HHHHHHHHHHHHHcCCHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIE 1920 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~ 1920 (1935)
-..|+..+.-. +.|++..|.
T Consensus 179 llAYniALaHy-~~~qyasAL 198 (459)
T KOG4340|consen 179 LLAYNLALAHY-SSRQYASAL 198 (459)
T ss_pred hhHHHHHHHHH-hhhhHHHHH
Confidence 23455555433 234444433
No 443
>PRK10811 rne ribonuclease E; Reviewed
Probab=91.23 E-value=0.45 Score=63.53 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCcccCC---------ccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1377 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~--~G~fV~l~~~v~g~V~~s~lsd~~~~~---------~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.+|.++.|+|.+|.+ .++||+||.+..||++++|....+..+ ....+++||.|-+-|..-...++-..|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtKGp~L 116 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCCCCce
Confidence 479999999999966 599999999999999999996543222 134588999999988764433333333
No 444
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.85 E-value=0.47 Score=36.97 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+|...|..++..|++++|...|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46677777777777777777777777777765
No 445
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=90.81 E-value=4.6 Score=43.40 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000173 1863 TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935 (1935)
Q Consensus 1863 ~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~~ 1935 (1935)
.+++..++..+...|+++.|..+.++++. ..|-+- .+|...+......|+...|..+|+++...+..-+|
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E-~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALA--LDPYDE-EAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 35677777888889999999999999999 666554 68999999999999999999999999988876543
No 446
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=2.3 Score=48.35 Aligned_cols=99 Identities=16% Similarity=0.021 Sum_probs=74.7
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRS 1850 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ 1850 (1935)
...+|..|...|.+++.+.|..+.-|.+.+.++++. +++.+..--.||++..|+. ++..+..+++.+....++.|..
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~--vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL--VKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH--HHHHHHHHHHHHhhccccHHHH
Confidence 345677788888888888888888888888888888 8888888888888887766 5777777888888888888888
Q ss_pred HHHHHHHhC-----CCCHHHHHHHHHH
Q 000173 1851 MFEGILSEY-----PKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1851 ife~al~~~-----Pk~~dlw~~ya~~ 1872 (1935)
.+.++.... |--.++|..+.+.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 888885432 2234577766554
No 447
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=90.41 E-value=26 Score=42.79 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHHHHHHHHhccccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH--------------H
Q 000173 1697 LSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--------------K 1761 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--------------~ 1761 (1935)
.+.|+..+....|+.|++. .. ++..-+ .||.++.|.+. ...-|++|+++.... +
T Consensus 28 ck~gdcraGv~ff~aA~qv-GT-eDl~tLSAIYsQLGNAyf---------yL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQV-GT-EDLSTLSAIYSQLGNAYF---------YLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HhccchhhhHHHHHHHHHh-cc-hHHHHHHHHHHHhcchhh---------hHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4667888888889888853 22 221111 23333333333 344456666665332 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc--------------CHHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ--------------QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~--------------~~e~A~~ll~ralk 1821 (1935)
.--.+++++.-.|.|++|.-...+-+..-. .....+++++..|... ..+++++.|++|.+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH
Confidence 233455677888888888877766553321 2355677888877643 35778888999887
Q ss_pred hCCCCChHHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHH---hCCCCHH---HHHHHHHHHHHcCCHHHH
Q 000173 1822 SLPRHKHIKFISQTAI-------------LEFKNGVADRGRSMFEGILS---EYPKRTD---LWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~-------------le~~~g~~e~Ar~ife~al~---~~Pk~~d---lw~~ya~~e~k~g~~e~a 1882 (1935)
.+-.+ .++....+. .||-.|+++.|....+.-|. .+.++.. ....++..++-.|+++-|
T Consensus 177 fy~eN--L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 177 FYMEN--LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHH--HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 66333 344444433 12335677777766655443 3455443 455566667778889988
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
...|.+++.
T Consensus 255 ~ehYK~tl~ 263 (639)
T KOG1130|consen 255 IEHYKLTLN 263 (639)
T ss_pred HHHHHHHHH
Confidence 888888775
No 448
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=6 Score=45.06 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
.++..|++++...++|-++.+.....++.++.+.++++..|...... +.++|+.-|+.+|...|.-.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence 56778888888888888888888889999999999999888888888 88899988888888877653
No 449
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=7.8 Score=44.77 Aligned_cols=191 Identities=12% Similarity=0.043 Sum_probs=120.2
Q ss_pred hccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCC
Q 000173 1715 TINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERT-EQNKLADELLYKMIKKFKH 1792 (1935)
Q Consensus 1715 ~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~-~~~~~A~el~~~~~k~~~~ 1792 (1935)
.|.+++++.. -++|+..-...++ ...+|.++-+.++..+|.+ ++|.-.-.++... .+..+-.+.+.+.+..+|.
T Consensus 35 ~I~Yte~fr~---~m~YfRAI~~~~E-~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK 110 (318)
T KOG0530|consen 35 KIAYTEDFRD---VMDYFRAIIAKNE-KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK 110 (318)
T ss_pred EeeechhHHH---HHHHHHHHHhccc-cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc
Confidence 4556565544 4555554444443 2478888888888888876 8887777666543 3455667777777778888
Q ss_pred CHHHHHHHHHHHHHc-CHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQE-GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1870 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e-~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya 1870 (1935)
+..+|...-...... ++. +-.++.++++....++ ..+|...-......++++.-.+.-..+|..+--+-.+|+.-.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN--YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN--YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc--hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 888888766555544 554 5566777787765444 456665555555566688888887888877766667787632
Q ss_pred HHHHH-cCCHH-----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-cC
Q 000173 1871 DQEIR-LGDVD-----LIRGLFERAISLSLPPKKMKFLFKKYLEYEKS-VG 1914 (1935)
Q Consensus 1871 ~~e~k-~g~~e-----~ar~lferal~~~~~pk~~k~l~~~yl~~E~~-~G 1914 (1935)
-.... .|-.+ +-.++....|. +-|.+. ..|+-...+... .|
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~--~vP~Ne-SaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKIL--LVPNNE-SAWNYLKGLLELDSG 236 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHH--hCCCCc-cHHHHHHHHHHhccC
Confidence 22222 23222 23344455555 666665 678887777665 44
No 450
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.66 E-value=12 Score=46.95 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH---HHHcCCCCHHHHHH
Q 000173 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL---ENEYGNPPEEAVVK 1748 (1935)
Q Consensus 1672 ~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~l---e~~~g~~~~e~a~~ 1748 (1935)
....-.+|..+|...+..++.+..+.++|+.+.|.++.+|||-... ..|...... ....|. ++=
T Consensus 26 p~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e--------~~~~~~F~~~~~~~~~g~-----~rL 92 (360)
T PF04910_consen 26 PNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFE--------RAFHPSFSPFRSNLTSGN-----CRL 92 (360)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------HHHHHHhhhhhcccccCc-----ccc
Confidence 3444566789999999999999999999999999999999995322 122222211 011111 010
Q ss_pred HHHHHHhcCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc--CHHHHHHHHHHHHHh
Q 000173 1749 VFQRALQYCDPKKV---HLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVWLRRVQRLLKQ--QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1749 vferAl~~~~~~~v---~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-~~~vw~~~~~~l~~~--~~e~A~~ll~ralk~ 1822 (1935)
-|++. .+... -+.++....+.|-+..|.+..+-++...|. .+---+.+++++.-. +++--.++++.....
T Consensus 93 ~~~~~----eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~ 168 (360)
T PF04910_consen 93 DYRRP----ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK 168 (360)
T ss_pred CCccc----cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh
Confidence 00000 11122 234455666777777777777777777665 444444444444433 555555555544332
Q ss_pred CCCC---ChHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCCCH
Q 000173 1823 LPRH---KHIKFISQTAILEFKNGVA---------------DRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1823 ~p~~---~~~~~~~~~a~le~~~g~~---------------e~Ar~ife~al~~~Pk~~ 1863 (1935)
.... ..+.+-+..|-.++..++. +.|+..+.+|+..+|.-.
T Consensus 169 ~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 169 CYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1111 0113344444555555555 899999999998888643
No 451
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.57 E-value=33 Score=46.37 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc
Q 000173 1866 WSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV 1913 (1935)
Q Consensus 1866 w~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~ 1913 (1935)
.-.++.++...|-+++...++|.++. +-...| -+|....-++.++
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LG--LERAHM-gmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLG--LERAHM-GMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHH-HHHHHHHHHHHhc
Confidence 44455556667888888888888776 555555 3555444444333
No 452
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.51 E-value=0.56 Score=36.04 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++...|.++++.|++++|+..|++++..+|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888899999999999999999874
No 453
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.21 E-value=26 Score=47.28 Aligned_cols=181 Identities=14% Similarity=0.201 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCC
Q 000173 1703 EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQ 1775 (1935)
Q Consensus 1703 dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~ 1775 (1935)
..|...++-+++..+...+.| ..+.+.|+.+.....+ ..+.|+..++||+..+... ....-++.+|.+.+.
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~e-a~~~l~la~iL~~eT~-n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQE-ARVRLRLASILLEETE-NLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 346666666665444333333 5678888888776665 4799999999998777431 555566788888888
Q ss_pred hHHHHHHHHHHHHhcCC-CHHHHHHHHHHH-----HHc-CHHHHHHHHHHHHHhCC--CCChHHHHHHHH--HHHHHcCC
Q 000173 1776 NKLADELLYKMIKKFKH-SCKVWLRRVQRL-----LKQ-QQEGVQAVVQRALLSLP--RHKHIKFISQTA--ILEFKNGV 1844 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~-~~~vw~~~~~~l-----~~~-~~e~A~~ll~ralk~~p--~~~~~~~~~~~a--~le~~~g~ 1844 (1935)
.. |.....+++..+.. ....|....+++ +.. ++..|.+.++....... .+..+.+...+. .++...+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 87 99999999987754 334455444443 223 78889999998887653 333233333332 34446777
Q ss_pred HHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHH--HcCCHHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEY----------PKRTDLWSIYLDQEI--RLGDVDLIRGLF 1886 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~----------Pk~~dlw~~ya~~e~--k~g~~e~ar~lf 1886 (1935)
++.+.+.+.++.... +...++|....++.. ..|+++.++..+
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L 248 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKL 248 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888774322 223567888888765 567766655443
No 454
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.18 E-value=0.86 Score=35.29 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|+.++..++.. ++++|++.|+++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3455555555555 555555555555555543
No 455
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.03 E-value=26 Score=43.67 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHH---cCChHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHhCCCC
Q 000173 1761 KVHLALLGLYER---TEQNKLADELLYKMI-KKFKHSCKVWLRRVQRLLKQ----------QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1761 ~v~~~l~~i~~~---~~~~~~A~el~~~~~-k~~~~~~~vw~~~~~~l~~~----------~~e~A~~ll~ralk~~p~~ 1826 (1935)
.+-+.|+-.+-+ .|+.++|.+++..++ +..+..+++|-.++..|... ..++|...|.++....|..
T Consensus 180 ~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 180 NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 666667766766 788888888887744 34467778888777766643 3567777888887776443
Q ss_pred ChHHHHHHHHHHHHHcCCHH----HHHHHHHHH---H-H--hCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1827 KHIKFISQTAILEFKNGVAD----RGRSMFEGI---L-S--EYPKRTDLWSI--YLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e----~Ar~ife~a---l-~--~~Pk~~dlw~~--ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
-.=+++|.++.-.|... +.+.+--++ + + ...+..+-|.. |+...+-.|+.++|...+++++.
T Consensus 260 ---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 260 ---YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34456666666666422 223322111 1 1 12233456654 44455567888888888888887
No 456
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.27 E-value=19 Score=42.90 Aligned_cols=142 Identities=11% Similarity=0.016 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCC-HHHH--HHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-KHS-CKVW--LRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~-~~vw--~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
-...++.|+-.|.. -.|..--..+..+|+.+.-...+++.+-+. ++. ...| =.|+-.+++. -+++|.+.-.||+
T Consensus 123 ~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ral 202 (491)
T KOG2610|consen 123 AIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRAL 202 (491)
T ss_pred HHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhc
Confidence 33444444444443 222222223334455555555555544432 111 1111 1344444444 5555555555555
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+.++.+ .-.-...|-.+.-+|+..+|.+.++.--...... .+-|-.-+-+++..++++.|..+|+|-+
T Consensus 203 qiN~~D--~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 203 QINRFD--CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred cCCCcc--hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 555433 1122222333334455555555444432221111 1112223444444455555555555544
No 457
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.89 E-value=7.4 Score=43.51 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH----HHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK---HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI----KFI 1832 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~---~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~----~~~ 1832 (1935)
..|..+++.|.+.|++++|.+.|.++..... ...++|+..++..+.. ++..+...+.+|-......... .+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 6677888888888888888888888776552 3466777777777777 7877777777776554332111 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYP 1860 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~P 1860 (1935)
..-|-.++..+++..|-.+|-.++..+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 2333344567788888888877766554
No 458
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.58 E-value=56 Score=44.30 Aligned_cols=236 Identities=15% Similarity=0.025 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHhcCCCH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE---ENEKLNIWVAYFNLEN-EYGNPPEEAVVKVFQRALQYCDPK 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e---e~Ekl~lW~ayl~le~-~~g~~~~e~a~~vferAl~~~~~~ 1760 (1935)
++.+=+-|+=....+.++++|-.+..++....+... ...-+--|.++-+.-. ..+ +.+.|.++.++|+..-|..
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~--~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG--DPEEAEDLARLALVQLPEA 491 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcccc
Confidence 344444454445567788888888877776555421 1112345777666543 345 5699999999999988764
Q ss_pred ------HHHHHHHHHHHHcCChHHHHHHHHHHHHh---c-CCCHHHHHHHHH--HHHHc-C--HHHHHHHH----HHHHH
Q 000173 1761 ------KVHLALLGLYERTEQNKLADELLYKMIKK---F-KHSCKVWLRRVQ--RLLKQ-Q--QEGVQAVV----QRALL 1821 (1935)
Q Consensus 1761 ------~v~~~l~~i~~~~~~~~~A~el~~~~~k~---~-~~~~~vw~~~~~--~l~~~-~--~e~A~~ll----~ralk 1821 (1935)
..+...+....-.|++++|+.+...+.+. + .....+|..+.. ++..+ + +......| .+-+.
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 55666677778889999999998877654 2 344666766633 33333 1 22222222 22233
Q ss_pred hCCCCChHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000173 1822 SLPRHKHIKFISQTAILEF----KNGVADRGRSMFEGILSEYPKRTDLWSI---YLDQEIRLGDVDLIRGLFERAISLSL 1894 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~----~~g~~e~Ar~ife~al~~~Pk~~dlw~~---ya~~e~k~g~~e~ar~lferal~~~~ 1894 (1935)
..|.+. -....+++++. -.+...+++.-++-....-|...+.|.. ++.+++..|+.+.|.....+....-.
T Consensus 572 q~~~~~--f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 572 QKPRHE--FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hcccch--hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 333322 22233333332 2345566777777666667777666654 57778889999999998888776322
Q ss_pred CchhHHHHHHHHHH-----HHHHcCCHHHHHHHHHH
Q 000173 1895 PPKKMKFLFKKYLE-----YEKSVGEEERIEYVKQK 1925 (1935)
Q Consensus 1895 ~pk~~k~l~~~yl~-----~E~~~G~~e~a~~v~~r 1925 (1935)
.+. ...+|...+. +=..+||.+.+.....+
T Consensus 650 ~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 650 NGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 322 1234544442 22336777766554443
No 459
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.57 E-value=1 Score=35.11 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|+.+|..++.. ++++|...|++|++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4566666666666 666666666666666553
No 460
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.43 E-value=2.9 Score=48.74 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
+.++|..+|+.|++..|.+ ++++..|++|...+++.-+|-.+|-+||...|.+..
T Consensus 131 k~ekA~~lfeHAlalaP~~--p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 131 KLEKAMTLFEHALALAPTN--PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred chHHHHHHHHHHHhcCCCC--HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4555555555555554444 345555555544444555555555555555554443
No 461
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.29 E-value=11 Score=47.95 Aligned_cols=208 Identities=14% Similarity=0.122 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHH-HHHH--cCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN-LENE--YGNPPEEAVVKVFQRALQYCDPKKVHL 1764 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~-le~~--~g~~~~e~a~~vferAl~~~~~~~v~~ 1764 (1935)
-|..++.-.+..-+++-||..|-|.-. . -|+.++. |+.+ .|+. .+...- -..+. ...-+.
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRd-l----------~~L~li~EL~~~k~rge~-P~~iLl--A~~~A---y~gKF~ 649 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRD-L----------RYLELISELEERKKRGET-PNDLLL--ADVFA---YQGKFH 649 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhc-c----------HHHHHHHHHHHHHhcCCC-chHHHH--HHHHH---hhhhHH
Confidence 477777777777888889988877652 2 2555443 2222 2321 111100 00000 112234
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH--Hh---c-----CC-CHHHHHHHHHHHHHc-CHHHHHHHHH------HHHHhCCCC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMI--KK---F-----KH-SCKVWLRRVQRLLKQ-QQEGVQAVVQ------RALLSLPRH 1826 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~--k~---~-----~~-~~~vw~~~~~~l~~~-~~e~A~~ll~------ralk~~p~~ 1826 (1935)
..+.++.++|.-..|.++|..+. .. | +. ...+-...|.+.... ++..|.+++- +|+.....+
T Consensus 650 EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~ 729 (1081)
T KOG1538|consen 650 EAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDH 729 (1081)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcc
Confidence 45667777777777777776442 10 1 01 122223344444444 4444444332 222222111
Q ss_pred Ch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1827 KH---------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1827 ~~---------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.- .+.+...|+.+.+...+.-|-++|.++= | --...+|+...++.++|-++-|+.-+
T Consensus 730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g-------D-~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG-------D-LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc-------c-HHHHhhheeecccchHhHhhhhhCcc
Confidence 10 1223333333333334444444444330 0 11234555566777777766665222
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1892 LSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1892 ~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
+. ...+..|.+|..+...+++|.+.|.||
T Consensus 802 --~~----~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 802 --FK----DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred --cc----ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 22 256667777766666677777777665
No 462
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=4.6 Score=46.01 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
.+..|...|.|||...|.. +..|.+-|..+++..+.+.+..--.++++..|+..-.-+-+.+.......++.|...+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~--~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTV--ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhchHHHHHHHHHhcCCCc--chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 6888999999999999988 58999999999999999999999999999999987777777787888888999999999
Q ss_pred HHHhc--CCCchhHHHHHHHHHHH
Q 000173 1888 RAISL--SLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1888 ral~~--~~~pk~~k~l~~~yl~~ 1909 (1935)
||.++ .-++.....||+....-
T Consensus 103 ra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 103 RAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHhcCCCCCcchHHHHHHHH
Confidence 99652 12222333677776654
No 463
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=87.11 E-value=3 Score=44.31 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=44.2
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEe--e--ccccCcc-------cccCcccccCCCCEEEEEEEEEecCCCee
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLC--H--VSELSED-------HVDNIETIYRAGEKVKVKILKVDKEKRRI 1534 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~--h--~sels~~-------~~~~~~~~~~~Gd~V~~~Il~id~~~~ri 1534 (1935)
=.|+++.|.|+.|...|+|++++| ++-++ | ..++.-. +..+-.+....|.+|+.+|+....+...|
T Consensus 80 fKGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 80 FKGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred cCCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 469999999999999999999976 33322 1 1111111 11112236889999999999987555554
No 464
>PRK11712 ribonuclease G; Provisional
Probab=86.84 E-value=1.3 Score=56.80 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCCCCEEEEEEEEEee--ceEEEEeCCCcEEEEECccCCCc--cc----------CCccccCCCCcEEEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDG--YV----------ESPEKEFPIGKLVAGRVLS 1435 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~--~G~fV~l~~~v~g~V~~s~lsd~--~~----------~~~~~~f~~G~~V~~kVl~ 1435 (1935)
..+|.++.|+|.+|.+ .++||++|.+..||+|++|+... +. ....+.+++||.|-+-|+.
T Consensus 36 ~~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 36 GIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred cccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 3489999999999977 58999999999999999998421 10 0112347789988887754
No 465
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.79 E-value=3.2 Score=51.29 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=88.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHH-HhcCC--------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHH-hC-----------
Q 000173 1766 LLGLYERTEQNKLADELLYKMI-KKFKH--------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-SL----------- 1823 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~-k~~~~--------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk-~~----------- 1823 (1935)
-.++|...|++.+|..++...- .+.+. ..-.|.+++-..++. .++.+..+|.+||+ .+
T Consensus 246 Ksq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~ 325 (696)
T KOG2471|consen 246 KSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK 325 (696)
T ss_pred HHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 3567888899999988886542 22221 466789999988888 99999999999996 11
Q ss_pred ----CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1824 ----PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1824 ----p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
..++...+.++.+-+++..|+|-.|-+.|..+.+.+-.++.+|..++...+
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 224557899999999999999999999999999999999999999998766
No 466
>PRK10811 rne ribonuclease E; Reviewed
Probab=86.27 E-value=1.4 Score=59.02 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=52.6
Q ss_pred CCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCC-CCCCCCCCCCEEEEEEEEEecC
Q 000173 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQF-DPLSGYDEGQFVKCKVLEISRT 1333 (1935)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~-~p~~~~~~G~~v~~~Vl~vd~~ 1333 (1935)
+|.|+.|+|.+|.++-+++||+||.+..|++|+.|+...+..++ |..... +....+++||.|-|.|..-...
T Consensus 38 vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~---~~~~~~~~i~~~Lk~GqeILVQV~KEa~g 110 (1068)
T PRK10811 38 KANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPAN---YSAHGRPNIKDVLREGQEVIVQIDKEERG 110 (1068)
T ss_pred ccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccc---cccccccccccccCCCCEEEEEEeecccC
Confidence 89999999999999877999999999999999999954332220 000000 1123578999999999874443
No 467
>PRK11712 ribonuclease G; Provisional
Probab=86.09 E-value=1.4 Score=56.69 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=50.2
Q ss_pred CCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCcc------------cccCcccccCCCCEEEEEEEEEec
Q 000173 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDK 1529 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~~------------~~~~~~~~~~~Gd~V~~~Il~id~ 1529 (1935)
...+|+|+.|+|.+|.+. ++||.|+. +-.|++|++++... ....+.+.+++||.|-|.|++-..
T Consensus 35 ~~~vGnIY~G~V~~v~pg~~AAFVdIG~-~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~ 112 (489)
T PRK11712 35 RGIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPL 112 (489)
T ss_pred ccccccEEEEEEeecCCCCceeEEeeCC-CccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCc
Confidence 456899999999999884 89999976 89999999988321 011235569999999999998543
No 468
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.08 E-value=3.9 Score=45.66 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK------ 1760 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~------ 1760 (1935)
..|..++.+|.+.|+++.|.+.|.|+...... -..++++|+.++.+...++++ ..+.....+|-......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~d~--~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFGDW--SHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhccchHHHH
Confidence 67889999999999999999999998874432 334678999999999999954 88888888887665442
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 000173 1761 ---KVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~ 1790 (1935)
.+|..+ .+...++|..|-++|-.+...|
T Consensus 113 nrlk~~~gL--~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGL--ANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHH--HHHHhchHHHHHHHHHccCcCC
Confidence 222222 2233566666666666655444
No 469
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=86.03 E-value=3 Score=41.04 Aligned_cols=61 Identities=23% Similarity=0.455 Sum_probs=49.5
Q ss_pred ccccccccCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEE
Q 000173 488 GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556 (1935)
Q Consensus 488 ~~~~~~~~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v 556 (1935)
.+++.+.+ ..|-+|.|+|..+...-++++++..+.++|+.... + .++|..|..|..|+...
T Consensus 14 S~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~------~-~~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 14 SPFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV------N-GEKYVRGSRVRLRLKDL 74 (104)
T ss_pred ChhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc------c-ccccccCCEEEEEECCH
Confidence 34566666 57999999999999999999999999999985432 2 25799999999998644
No 470
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=85.97 E-value=2.4 Score=43.99 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.8
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc--cc-----------CCccccCCCCcEEEEEEEEEe
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV-----------ESPEKEFPIGKLVAGRVLSVE 1437 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~--~~-----------~~~~~~f~~G~~V~~kVl~vd 1437 (1935)
+|+++.|+|++.+..|+.|.|+.--+.+|+...|... |- .+-.-.|..|+.|++||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999989999999998842 21 222235679999999998875
No 471
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=85.66 E-value=1.8 Score=46.14 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=46.2
Q ss_pred CCCEEEEEEEEEecCceEEEe--------CCCeEEeecCCCCccc--cccCCCCCCCCCCEEEEEEEEE-eCCeEEEE
Q 000173 498 PGMVVKGKVIAVDSFGAIVQF--------PGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV-KSKRITVT 564 (1935)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l--------~~~v~g~vp~~hls~~--~~~~p~~~fkvG~~v~~rVL~v-~~~~i~lt 564 (1935)
.|++|.++|..++..=+-|+| .+.+.|+++...+-.. ...++-+.|++|+-|.|+|++. ....-.||
T Consensus 68 ~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LT 145 (193)
T KOG3409|consen 68 VGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLT 145 (193)
T ss_pred cCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEE
Confidence 477777777777665444443 3578899998766543 3345667899999999999987 33444444
No 472
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.47 E-value=1.5 Score=34.09 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+|...|.++...|+++.|...|+++++..|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777778888888888888888888777763
No 473
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.24 E-value=1.4 Score=33.71 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1793 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~ 1793 (1935)
.++.++.+|.+.|++++|.+.|+++++.||++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45677778888888888888888888888764
No 474
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=84.48 E-value=5 Score=42.75 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=39.5
Q ss_pred CCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc--cc--CCc-------cccCCCCcEEEEEEEEEeC
Q 000173 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV--ESP-------EKEFPIGKLVAGRVLSVEP 1438 (1935)
Q Consensus 1378 ~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~--~~--~~~-------~~~f~~G~~V~~kVl~vd~ 1438 (1935)
.|++|.|.|+.|.+.|+|+++|+ ++.++.---...+ |. +|| .....+|..|+.+|+.+.-
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~ 151 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRV 151 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEE
Confidence 59999999999999999999995 4444432222222 21 121 1245678888888877653
No 475
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.46 E-value=1.3e+02 Score=45.16 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC---C--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL---P--RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~---p--~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
.+-|.+....-... +..+-.-.+.|++-.. | +..-.+.|.++|++....|.+++|+..+-.|....+ ..+..
T Consensus 1629 sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~ 1706 (2382)
T KOG0890|consen 1629 SDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVL 1706 (2382)
T ss_pred chhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHH
Confidence 45676665544443 4444444555554433 1 123358999999999999999999999988887763 45888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------hhHHHHHH----HHHHHHHHcCC--HHHHHHHHHHHHHHH
Q 000173 1868 IYLDQEIRLGDVDLIRGLFERAISLSLPP-----------KKMKFLFK----KYLEYEKSVGE--EERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1868 ~ya~~e~k~g~~e~ar~lferal~~~~~p-----------k~~k~l~~----~yl~~E~~~G~--~e~a~~v~~rAle~v 1930 (1935)
..|.+++..|+..+|..+++..++...+. +++ .++. ++-.|....|+ .+.+...|..|.+..
T Consensus 1707 E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~-~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail 1785 (2382)
T KOG0890|consen 1707 ERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL-LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAIL 1785 (2382)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh-hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHc
Confidence 88999999999999999999999733221 233 3444 22233333444 345667777776543
No 476
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.77 E-value=1.1e+02 Score=38.78 Aligned_cols=76 Identities=18% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Q 000173 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1746 a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~ 1822 (1935)
.+.+..|.+.+..+.-.|+.++++|.++ ..+.-..+++|+....-+....-..++..|.+.+.+.+..+|.+|+-.
T Consensus 85 veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr 160 (711)
T COG1747 85 VEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 3444455555555555555555555544 344444445544443322333233333322222444444555554443
No 477
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=83.66 E-value=2.9 Score=43.44 Aligned_cols=58 Identities=24% Similarity=0.304 Sum_probs=41.6
Q ss_pred CCCEEEEEEEEEecCceEEEeCCCe-EEeecCCCCccc-cc------------cCCCCCCCCCCEEEEEEEEE
Q 000173 498 PGMVVKGKVIAVDSFGAIVQFPGGV-KALCPLPHMSEF-EI------------VKPGKKFKVGAELVFRVLGV 556 (1935)
Q Consensus 498 ~G~~v~g~V~~v~~~G~~V~l~~~v-~g~vp~~hls~~-~~------------~~p~~~fkvG~~v~~rVL~v 556 (1935)
+|+++.|+|++.+..|+.|+++ .+ +-+||...|-.- .. ..-+-.|..|+.|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslg-FFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLG-FFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEEC-CEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEec-ccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 6999999999999999999996 54 678998888532 11 11112358999999999988
No 478
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.60 E-value=1.1e+02 Score=36.88 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccc----c---ch--hhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 000173 1686 SFVWIKYMAFMLSMA-DVEKARSIAERALQTINI----R---EE--NEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL 1754 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~----~---ee--~Ekl~lW~ayl~le~~~g~~-~~e~a~~vferAl 1754 (1935)
+....+++...+..+ +++.|...++||.+.++. . .+ .-++.+...+++.+...+.+ ..++|..+.+-+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 345566677777888 999999999999986432 1 11 12334555566666665532 1233444444443
Q ss_pred hcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cCHHHHHHHHHHHHHh-CCCCChH
Q 000173 1755 QYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK---QQQEGVQAVVQRALLS-LPRHKHI 1829 (1935)
Q Consensus 1755 ~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~---~~~e~A~~ll~ralk~-~p~~~~~ 1829 (1935)
.-.+. ..++.-.+.+..+.++.+.+.+.+.+|+..+......|-.....+.. .....|...+...+.. +.....
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~- 193 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED- 193 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh-
Confidence 33344 37776777777779999999999999999876455555555555433 3555566666555443 222211
Q ss_pred HHHHHHHHHHH----Hc-CC------HHHHHHHHHHHHHhC--CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1830 KFISQTAILEF----KN-GV------ADRGRSMFEGILSEY--PKR--------TDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1830 ~~~~~~a~le~----~~-g~------~e~Ar~ife~al~~~--Pk~--------~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
. |..-+-+.. .. ++ .+....+++.+-+.. |-. .-+|+. +.-.++.++++.|...|+-
T Consensus 194 ~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 194 Q-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred H-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 1 333332221 22 11 334444455433322 211 226776 6777889999999999998
Q ss_pred HHh
Q 000173 1889 AIS 1891 (1935)
Q Consensus 1889 al~ 1891 (1935)
++.
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 875
No 479
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=19 Score=41.21 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.++.+|+|.++..|++-++...-..+|..+|.+.-.++.-+......=+.++|+.-|..++. +.|.-+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 56667777777777777777777777777777766666666666666666677777777776 555444
No 480
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.13 E-value=29 Score=44.42 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=97.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------hccccchhhHH---HHHHHHHHHHHH
Q 000173 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ-----------------TINIREENEKL---NIWVAYFNLENE 1737 (1935)
Q Consensus 1678 ll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~-----------------~i~~~ee~Ekl---~lW~ayl~le~~ 1737 (1935)
+|..+|......++.+.+...+|+.+-|..+.+|||= ..+|.....|. -+| .||....+
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~ 354 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQ 354 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHh
Confidence 4566799999999999999999998888888877773 22332222221 233 34544567
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHH-HHcCChHHHHHHHHHHHH--hcCC--CHHHHHHHHHHHHHc-C-
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK--KVHLALLGLY-ERTEQNKLADELLYKMIK--KFKH--SCKVWLRRVQRLLKQ-Q- 1808 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~--~v~~~l~~i~-~~~~~~~~A~el~~~~~k--~~~~--~~~vw~~~~~~l~~~-~- 1808 (1935)
-| ...+|.+..+-.++..|.. -.-..++++| .++.+|+-..++++..-. ++.+ +...=+.+|.||+.. .
T Consensus 355 RG--C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 355 RG--CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEE 432 (665)
T ss_pred cC--ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCCh
Confidence 78 4499999999999998873 2223334544 477888888888876632 1111 222234677777777 3
Q ss_pred --HHHHHHHHHHHHHhCC
Q 000173 1809 --QEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1809 --~e~A~~ll~ralk~~p 1824 (1935)
-+.|+.++.+|++.+|
T Consensus 433 ~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 433 DDRQSALNALLQALKHHP 450 (665)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 6788999999999988
No 481
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.06 E-value=0.82 Score=54.39 Aligned_cols=115 Identities=15% Similarity=0.001 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.|.++.|.+.|.+++.+.+.+..++-..+..+++. +...|..-+..|+.++|... .-|..-+..+..+|+.++|+..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHhhchHHHHHH
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1852 FEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1852 fe~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|+.+++..-+ ....|.. ...-..+.++.-|..++|+..
T Consensus 205 l~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 205 LALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHH
No 482
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.66 E-value=1.6 Score=54.45 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=87.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1847 (1935)
-+...+.++.|..+|.+++...|+....|-+.+..+++. ++..|..=+.+|++..|.. ++.|..-|+.....+.+-+
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~--~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY--IKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh--hheeeeccHHHHhHHHHHH
Confidence 344567889999999999999999999999998888888 9999999999999998877 5899999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1848 GRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1848 Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
|...|+......|.+.++-..+..
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHH
Confidence 999999999999999887655443
No 483
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.61 E-value=1.5e+02 Score=37.63 Aligned_cols=219 Identities=14% Similarity=0.165 Sum_probs=130.6
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhh---HHHHHHH------HHHHHHHcCCCCHHHHHHHHHHHHhcC---CCH-----
Q 000173 1698 SMADVEKARSIAERALQTINIREENE---KLNIWVA------YFNLENEYGNPPEEAVVKVFQRALQYC---DPK----- 1760 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~E---kl~lW~a------yl~le~~~g~~~~e~a~~vferAl~~~---~~~----- 1760 (1935)
..|=+++|.++.++|+..+.--.+.+ +.-.-+. ...+....|++ .+|.+-...+++.+ |..
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~--~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY--VEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhCCchHHHHH
Confidence 55668899999999987533211111 1111112 22233455743 66655555554433 431
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----
Q 000173 1761 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVW----LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---- 1828 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw----~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~---- 1828 (1935)
.++.-++......+.+++|...|..+.+.- .+.++| +++|-.|+++ +.+.--+++++. .|.+.+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t-~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLT-ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchH
Confidence 444444444456688999999999999875 344555 3566667766 555444444433 233221
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHH----HHHHHcCCHHHHHHHHHHHHhc--CCC
Q 000173 1829 ----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL---WSIYL----DQEIRLGDVDLIRGLFERAISL--SLP 1895 (1935)
Q Consensus 1829 ----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl---w~~ya----~~e~k~g~~e~ar~lferal~~--~~~ 1895 (1935)
..+++.+|-+.|.++++.+|+..+...|+.. +..|+ -..+. ......|+..+++++..-++.. +.+
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 3688889999999999999999999999876 43332 22222 2334678988999888888762 344
Q ss_pred chhHHHHHHHHH--HHHHHcCC--HHHHHHHHH
Q 000173 1896 PKKMKFLFKKYL--EYEKSVGE--EERIEYVKQ 1924 (1935)
Q Consensus 1896 pk~~k~l~~~yl--~~E~~~G~--~e~a~~v~~ 1924 (1935)
.-.. .+|..-+ ++....|+ .+...+.|.
T Consensus 520 Di~v-qLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 520 DIPV-QLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred CchH-HHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3333 6777655 56666777 444444443
No 484
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=82.38 E-value=5.9 Score=42.49 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=53.2
Q ss_pred CCCCCEEEEEEEEEeCCeEEEEEC--------CCcEEEEEccccCCCCcchhhccccCCCCCEEEEEEEEEeCCCcEE
Q 000173 1161 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLL 1230 (1935)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~v~l~--------~~~~g~i~~~~~s~~~~~~~~~~~~f~vG~~v~~~V~~~d~~~~~~ 1230 (1935)
...|++|++.|..+...++-++|. ...+|.|+.-++-..-.+.-.+.+.|.+|+.|.|+|++.+.+.+.+
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~ 143 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYL 143 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEE
Confidence 478999999999999988877662 2568999887764433333456788999999999999966554433
No 485
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.18 E-value=42 Score=45.54 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH---HHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL---RRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~---~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
|-..+++.+++|-+..|.+.|.....+-..-..... .+..-++.. .++.+.+.+..++..+-.. .+++..+.|.-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nirq-NlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQ-NLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-hhHHHHHHHHH
Confidence 888899999999999999888766544321111111 122223333 7888888888887765332 35666666665
Q ss_pred HHHcCCHHHHHHHHHH------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1839 EFKNGVADRGRSMFEG------------ILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~------------al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
+..+=-.+.-.++||. .+-.+..+.++.++|++...+.|.+.++..+-..
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 5544444555555554 3555677889999999999999988877665543
No 486
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.66 E-value=63 Score=40.71 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHc--CHHHHHHHHHHHHHh---CCCC--ChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCC----H
Q 000173 1796 VWLRRVQRLLKQ--QQEGVQAVVQRALLS---LPRH--KHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKR----T 1863 (1935)
Q Consensus 1796 vw~~~~~~l~~~--~~e~A~~ll~ralk~---~p~~--~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~----~ 1863 (1935)
..++++..++.. +++.|+.-+++|+-. .|.. ...+.+..+|+++.... ....|+.++.++++..... .
T Consensus 48 t~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsc 127 (629)
T KOG2300|consen 48 THLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSC 127 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhH
Confidence 344555555554 666666666666433 2322 11345566666666554 5666666666666554332 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lf 1886 (1935)
.+.++++++..-..|+.-|..++
T Consensus 128 kllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 128 KLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHHHHHHhhhccchhHHHHH
Confidence 24455555555556666666553
No 487
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=81.66 E-value=15 Score=44.65 Aligned_cols=222 Identities=12% Similarity=0.040 Sum_probs=128.6
Q ss_pred cCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hccccchhhHHHHHHHHHHHHHHc
Q 000173 1666 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQ---TINIREENEKLNIWVAYFNLENEY 1738 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~---~i~~~ee~Ekl~lW~ayl~le~~~ 1738 (1935)
++-...++.|+.+++.--++ +.+|.++...|.-++++++|.+.-.--|. ++..+...- ...-.+.|.....
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA--KssgNLGNtlKv~ 108 (639)
T KOG1130|consen 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA--KSSGNLGNTLKVK 108 (639)
T ss_pred cchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc--cccccccchhhhh
Confidence 44556677888888765443 45566666666677777777664432221 112111000 1111233444455
Q ss_pred CCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1739 GNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ-------------NKLADELLYKMIKKFKHSCKVWL 1798 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~~~-------------~~~A~el~~~~~k~~~~~~~vw~ 1798 (1935)
|.+ ++|.-...|-|..... ...++.++++|...|+ .+++.+.|+.+.+-|..+.++-.
T Consensus 109 G~f--deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 109 GAF--DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred ccc--chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 6666666665544321 2778888888865543 46777788888776654444433
Q ss_pred HHHH-------------HHHHc-CHHHHHHHHHHHHHh---CCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q 000173 1799 RRVQ-------------RLLKQ-QQEGVQAVVQRALLS---LPRH-KHIKFISQTAILEFKNGVADRGRSMFEGILSEY- 1859 (1935)
Q Consensus 1799 ~~~~-------------~l~~~-~~e~A~~ll~ralk~---~p~~-~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~- 1859 (1935)
.++. .|+-. +++.|....+.-|.. +..+ ..-.++.++|..+.-.|+++.|.+.|.+.+...
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 3333 33333 677766555433322 2221 112678888888988999999999999987542
Q ss_pred --CCC-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1860 --PKR-TD--LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1860 --Pk~-~d--lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+ .. -.+.++..+.-..+++.|..+|.|-+.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 22 345555566666677778888877554
No 488
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=81.44 E-value=5.6 Score=38.15 Aligned_cols=65 Identities=23% Similarity=0.206 Sum_probs=50.9
Q ss_pred EEEeEEEEEeeceEEE-EEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1471 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1471 ~v~G~V~~v~~~G~FV-~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
.+.|.|+.+.+.+.|. .|++ +..=++|+|-- +..-.-..-+||.|++.+-..|.+++||..-.|.
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isGK----mR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~~ 73 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASGR----MRKHRIRILAGDRVTLELSPYDLTKGRINFRHKD 73 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEeccc----eeeeeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence 3789999999888775 7876 78888998742 2221224679999999999999999999987764
No 489
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.30 E-value=64 Score=36.58 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=57.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCC-
Q 000173 1749 VFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRH- 1826 (1935)
Q Consensus 1749 vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~- 1826 (1935)
+.+..-...++.-+|+.+.+ -..+.|+..|-.+-..- -+.+.+.+.+|.||.+.+.++|..+|-++|...+..
T Consensus 100 L~~~tk~S~dP~llYy~Wsr-----~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~ 174 (203)
T PF11207_consen 100 LQEETKNSQDPYLLYYHWSR-----FGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDD 174 (203)
T ss_pred HHHHHccCCCccHHHHHhhc-----cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCC
Confidence 33333333344455554432 23445666666655433 256777777777777667777777777777766443
Q ss_pred -ChHHHHHHHHHHHHHcCCHHHH
Q 000173 1827 -KHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1827 -~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
-+++++..+|.++++.|+++.|
T Consensus 175 ~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 175 NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCCHHHHHHHHHHHHHhcchhhh
Confidence 2357777777777777777765
No 490
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.45 E-value=8.7 Score=45.86 Aligned_cols=97 Identities=16% Similarity=-0.013 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKH----SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~----~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
|-.-++-|.+..+|..|.+.|...++.-.. +..+|.+.+...+.. ++..|..-..+|++..|.+ .+.+++-|+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--~Ka~~R~Ak 161 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--LKAYIRGAK 161 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhhhhhhhH
Confidence 444568888999999999999999987643 355677777777777 8999999999999998877 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.++....+..|..+.+..++.+-.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999998888766543
No 491
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.43 E-value=47 Score=41.64 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=98.4
Q ss_pred HhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCC-CCChHHH
Q 000173 1754 LQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLP-RHKHIKF 1831 (1935)
Q Consensus 1754 l~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p-~~~~~~~ 1831 (1935)
++.+|.. ...++++.++.+.|++..|.++.++|+-.|.....-.+ ..+......-.+|=-|. .+ ++.-..+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F--~~~~~~~~~g~~rL~~~-----~~eNR~ffla 105 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSF--SPFRSNLTSGNCRLDYR-----RPENRQFFLA 105 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHh--hhhhcccccCccccCCc-----cccchHHHHH
Confidence 3555665 88888888999999999999999999865421111000 00000000000000000 00 1111356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhc------CCCchhHHHHH
Q 000173 1832 ISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQE-IRLGDVDLIRGLFERAISL------SLPPKKMKFLF 1903 (1935)
Q Consensus 1832 ~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e-~k~g~~e~ar~lferal~~------~~~pk~~k~l~ 1903 (1935)
...+.+.+.+.|-+.-|.++..-++..+|. +.---.-++|++ ++.++++-...+++..... ...|. +.|
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~ 182 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAF 182 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHH
Confidence 677888888999999999999999999998 554444455544 4778888777777765541 01221 345
Q ss_pred HHHHHHHHHcC--------------CHHHHHHHHHHHHHHHH
Q 000173 1904 KKYLEYEKSVG--------------EEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1904 ~~yl~~E~~~G--------------~~e~a~~v~~rAle~v~ 1931 (1935)
..-+.+..... +.+.|.....+|+....
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 55444433222 23778888888886554
No 492
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.04 E-value=55 Score=45.52 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
.++--.+-|++||...-. .+.|-...++-.+.+.|.+|..+|.--..+ ...++..||..+.+. .+++|.-.|++
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~---~k~i~~~ya~hL~~~~~~~~Aal~Ye~ 964 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEK---QKVIYEAYADHLREELMSDEAALMYER 964 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHH---HHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 466677778888766543 256777777777888888887777655543 356677777777777 77777777766
Q ss_pred HH
Q 000173 1819 AL 1820 (1935)
Q Consensus 1819 al 1820 (1935)
+-
T Consensus 965 ~G 966 (1265)
T KOG1920|consen 965 CG 966 (1265)
T ss_pred hc
Confidence 53
No 493
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.32 E-value=11 Score=44.83 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchhHHHHHHH
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS---LSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~---~~~~pk~~k~l~~~ 1905 (1935)
+.++.+++..+...|+++.+...+++++..+|.+..+|...+..+.+.|+...|+..|+++-. ..+.......+|+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 577888888999999999999999999999999999999999999999999999999988754 23333334457777
Q ss_pred HHHH
Q 000173 1906 YLEY 1909 (1935)
Q Consensus 1906 yl~~ 1909 (1935)
|.+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 7765
No 494
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=79.31 E-value=6.2 Score=36.36 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=46.9
Q ss_pred EEEeEEEEEeeceEEE-EEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeE
Q 000173 1471 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1935)
Q Consensus 1471 ~v~G~V~~v~~~G~FV-~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ 1535 (1935)
.+.|.|+...+.|.|- .|++ +..=+||+|--- ..-.-...+||.|.+.+-..|.+++||.
T Consensus 6 e~~G~V~e~L~~~~f~V~l~n-g~~vla~i~GKm----r~~rI~I~~GD~V~Ve~spyd~tkgrIi 66 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELEN-GHEVLAHISGKI----RMHYIRILPGDKVKVELSPYDLTRGRIT 66 (68)
T ss_pred EEEEEEEEECCCCEEEEEECC-CCEEEEEecCcc----hhccEEECCCCEEEEEECcccCCcEeEE
Confidence 3789999999888875 7776 788899987522 2112347899999999999999999885
No 495
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.05 E-value=2.6e+02 Score=38.29 Aligned_cols=181 Identities=16% Similarity=0.118 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH---
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK--- 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~--- 1760 (1935)
-..+..+-+.+....|...+|...+-+|= |.+.. .+--.+ +.++-+ ..-..+..++++..|..
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-------d~~~aa~lle~~---~~~L~~---~~~lsll~~~~~~lP~~~l~ 412 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAAG-------DPEMAADLLEQL---EWQLFN---GSELSLLLAWLKALPAELLA 412 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhCC-------CHHHHHHHHHhh---hhhhhc---ccchHHHHHHHHhCCHHHHh
Confidence 36778888888888888888877665443 22211 111111 111110 11244556666666643
Q ss_pred ---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----C---HHHHHH-HHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1761 ---KVHLALLGLYERTEQNKLADELLYKMIKKFKH-----S---CKVWLR-RVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1761 ---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-----~---~~vw~~-~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
.+-+.++=......++.+|..+..++....+. . .--|.. .+.+.... +++.|.++.++++..+|...
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 22222222334578899999999888765543 1 123443 33444445 99999999999999998853
Q ss_pred h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH--HcCC
Q 000173 1828 H---IKFISQTAILEFKNGVADRGRSMFEGILSEY----PKRTDLWSIYLDQEI--RLGD 1878 (1935)
Q Consensus 1828 ~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~----Pk~~dlw~~ya~~e~--k~g~ 1878 (1935)
. +.++...+....-.|++++|+.+...+.+.. --...+|..+.+-++ .+|.
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 2 4677788888888999999999998887662 234567888865544 5663
No 496
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=79.00 E-value=3.3 Score=32.92 Aligned_cols=26 Identities=27% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERAL 1713 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl 1713 (1935)
.|..++..+.+.|++++|.++|+++|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
No 497
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.87 E-value=1.2e+02 Score=39.11 Aligned_cols=83 Identities=10% Similarity=0.165 Sum_probs=55.6
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1680 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIW-VAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW-~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
...|+++...+.++..+.-.|+.+.|...++.++. +..+ +...+-+| .+|+....+.- ..|-..|.+.+..++
T Consensus 261 ~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~k-Q~~~l~~fE~aw~~v~~~~~----~~aad~~~~L~desd 334 (546)
T KOG3783|consen 261 KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMK-QVKSLMVFERAWLSVGQHQY----SRAADSFDLLRDESD 334 (546)
T ss_pred HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHH-HHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHhhhh
Confidence 34788888888999999888889999999998886 2221 22333455 23444322222 557778888888888
Q ss_pred CHHHHHHHHH
Q 000173 1759 PKKVHLALLG 1768 (1935)
Q Consensus 1759 ~~~v~~~l~~ 1768 (1935)
+...++.|..
T Consensus 335 WS~a~Y~Yfa 344 (546)
T KOG3783|consen 335 WSHAFYTYFA 344 (546)
T ss_pred hhHHHHHHHH
Confidence 8766555544
No 498
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=78.66 E-value=1.6 Score=38.62 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=44.3
Q ss_pred CEEEEEEEEEeCCeEEEEECCCcEEEEEccccCCCCcchhhc-cccCCCCCEEEEEEEEEe
Q 000173 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVTGHVLSIN 1224 (1935)
Q Consensus 1165 ~~v~g~V~~v~~~~l~v~l~~~~~g~i~~~~~s~~~~~~~~~-~~~f~vG~~v~~~V~~~d 1224 (1935)
...++.|+.+.++++.|++.. .|.+.....+.+.+...++ .+++++|+.+.+.+....
T Consensus 2 S~htA~VQh~~kdfAvvSL~~--t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 2 SRHTAIVQHADKDFAIVSLAT--TGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CccchhhhhhhhceEEEEeec--cccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 456789999999999999963 4566666666666655554 578999999999987644
No 499
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=34 Score=43.85 Aligned_cols=98 Identities=12% Similarity=-0.052 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHh-cC--CCchhHHHHHH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK-RTDLWSIYLDQEI-RLGDVDLIRGLFERAIS-LS--LPPKKMKFLFK 1904 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e~-k~g~~e~ar~lferal~-~~--~~pk~~k~l~~ 1904 (1935)
.++..|.+.+-+.|-+.-|.....-+++.+|. ++-....++|.+. +..+++-...+|+..=. .+ ..|. +.|.
T Consensus 343 L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN---~~yS 419 (665)
T KOG2422|consen 343 LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN---FGYS 419 (665)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC---chHH
Confidence 34555666666788888888888888888887 6655666666554 66777777777776622 11 1221 2344
Q ss_pred HHHHHHHHcC----CHHHHHHHHHHHHHHH
Q 000173 1905 KYLEYEKSVG----EEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1905 ~yl~~E~~~G----~~e~a~~v~~rAle~v 1930 (1935)
..+.+-.-++ +...|...+.+|+...
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 4443222222 2456777777776543
No 500
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.50 E-value=2.6e+02 Score=37.89 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHh-cCCC----HHHHHHHHHHHH-HcCChHHHHHHHHHHHHhcCC--CHHH----HHHHHHHHHHcCHHH
Q 000173 1744 EAVVKVFQRALQ-YCDP----KKVHLALLGLYE-RTEQNKLADELLYKMIKKFKH--SCKV----WLRRVQRLLKQQQEG 1811 (1935)
Q Consensus 1744 e~a~~vferAl~-~~~~----~~v~~~l~~i~~-~~~~~~~A~el~~~~~k~~~~--~~~v----w~~~~~~l~~~~~e~ 1811 (1935)
..|...++-+++ ...+ -.+++.|+.+|. ...+++.|+..++++...... ..++ -..++.++.++++..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456677777773 3322 289999999876 789999999999999876633 2222 223345444555555
Q ss_pred HHHHHHHHHHhCCCCCh--HHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHH----HHHHHHcCCHHH
Q 000173 1812 VQAVVQRALLSLPRHKH--IKFISQTA--ILEFKNGVADRGRSMFEGILSEYP--KRTDLWSIY----LDQEIRLGDVDL 1881 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~--~~~~~~~a--~le~~~g~~e~Ar~ife~al~~~P--k~~dlw~~y----a~~e~k~g~~e~ 1881 (1935)
|...+.+++.......| +....+|. .+....+|+..|...++.+....- .+..+...+ +.+....+..+.
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 99999999998766332 22222222 233345899999999999987653 333332221 222335566667
Q ss_pred HHHHHHHHHhc--CC------CchhHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHh
Q 000173 1882 IRGLFERAISL--SL------PPKKMKFLFKKYLEYE--KSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1882 ar~lferal~~--~~------~pk~~k~l~~~yl~~E--~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+.....++... .+ .+.+. ..|...+++- ...|+.+.+........+++..
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL-~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~ 257 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQL-KALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE 257 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 77777776431 01 22234 4677777653 4578888888777776666654
Done!