Query 000173
Match_columns 1935
No_of_seqs 683 out of 4655
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 22:21:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 8.4E-28 2.9E-32 280.6 27.1 210 1259-1543 6-219 (285)
2 3go5_A Multidomain protein wit 100.0 9.3E-27 3.2E-31 271.9 29.3 226 584-850 5-236 (285)
3 4e6h_A MRNA 3'-END-processing 99.9 1.5E-21 5.2E-26 257.8 26.9 238 1686-1931 302-572 (679)
4 2ond_A Cleavage stimulation fa 99.9 6.8E-21 2.3E-25 230.8 28.5 242 1683-1931 5-272 (308)
5 2uy1_A Cleavage stimulation fa 99.9 6.2E-20 2.1E-24 236.3 29.2 252 1668-1931 64-415 (493)
6 4e6h_A MRNA 3'-END-processing 99.8 5.3E-19 1.8E-23 233.5 32.6 253 1669-1930 49-408 (679)
7 2ooe_A Cleavage stimulation fa 99.8 9.7E-19 3.3E-23 228.6 30.5 238 1686-1932 230-495 (530)
8 2ond_A Cleavage stimulation fa 99.8 1E-18 3.6E-23 211.6 24.9 218 1670-1897 34-273 (308)
9 2ooe_A Cleavage stimulation fa 99.8 7.1E-18 2.4E-22 220.4 29.2 251 1665-1928 25-384 (530)
10 2uy1_A Cleavage stimulation fa 99.8 3.1E-18 1.1E-22 220.5 25.2 251 1666-1926 28-380 (493)
11 1w3b_A UDP-N-acetylglucosamine 99.8 1.6E-16 5.3E-21 198.3 31.0 252 1665-1928 114-367 (388)
12 1w3b_A UDP-N-acetylglucosamine 99.8 2.9E-16 1E-20 195.9 32.9 249 1668-1928 83-333 (388)
13 4eqf_A PEX5-related protein; a 99.7 9.3E-17 3.2E-21 198.5 24.0 259 1665-1934 78-361 (365)
14 3hym_B Cell division cycle pro 99.7 3.1E-16 1.1E-20 189.6 27.7 251 1666-1928 36-298 (330)
15 1fch_A Peroxisomal targeting s 99.7 4.6E-16 1.6E-20 191.8 27.3 258 1665-1935 77-365 (368)
16 3cv0_A Peroxisome targeting si 99.7 6.1E-16 2.1E-20 186.8 27.0 258 1665-1934 34-320 (327)
17 4eqf_A PEX5-related protein; a 99.7 3.1E-16 1.1E-20 193.8 23.7 237 1685-1931 64-312 (365)
18 3ieg_A DNAJ homolog subfamily 99.7 9.5E-15 3.2E-19 178.4 36.2 252 1668-1928 53-334 (359)
19 2xpi_A Anaphase-promoting comp 99.7 1.6E-15 5.3E-20 200.5 30.9 252 1666-1929 319-579 (597)
20 3ieg_A DNAJ homolog subfamily 99.7 6.5E-15 2.2E-19 179.9 32.8 255 1665-1929 16-301 (359)
21 2y4t_A DNAJ homolog subfamily 99.7 4.1E-15 1.4E-19 188.9 31.7 255 1666-1929 74-358 (450)
22 2y4t_A DNAJ homolog subfamily 99.7 9.2E-15 3.1E-19 185.7 33.5 254 1665-1929 39-324 (450)
23 2xpi_A Anaphase-promoting comp 99.7 6.4E-15 2.2E-19 194.6 32.7 252 1668-1929 288-545 (597)
24 3hym_B Cell division cycle pro 99.7 5.8E-15 2E-19 178.4 28.2 243 1666-1918 70-323 (330)
25 1fch_A Peroxisomal targeting s 99.7 3.8E-15 1.3E-19 183.6 24.9 253 1668-1931 41-316 (368)
26 2pl2_A Hypothetical conserved 99.7 4.2E-15 1.4E-19 170.2 22.6 199 1683-1891 2-213 (217)
27 3fp2_A TPR repeat-containing p 99.6 1.2E-13 4.1E-18 179.5 35.7 254 1665-1931 38-409 (537)
28 3cv0_A Peroxisome targeting si 99.6 7E-14 2.4E-18 168.7 27.6 235 1685-1931 20-271 (327)
29 2h6f_A Protein farnesyltransfe 99.6 1.6E-14 5.3E-19 179.7 22.2 237 1678-1926 89-344 (382)
30 2h6f_A Protein farnesyltransfe 99.6 4.4E-14 1.5E-18 175.7 25.6 233 1665-1910 110-363 (382)
31 1kl9_A Eukaryotic translation 99.6 1.2E-17 4.1E-22 181.6 -5.7 123 1376-1505 13-138 (182)
32 3u4t_A TPR repeat-containing p 99.6 5.2E-14 1.8E-18 165.6 24.5 237 1685-1930 2-251 (272)
33 3uq3_A Heat shock protein STI1 99.6 1.5E-13 5E-18 159.7 26.6 222 1687-1929 6-236 (258)
34 2q7f_A YRRB protein; TPR, prot 99.6 4.4E-14 1.5E-18 162.8 22.0 215 1685-1911 22-238 (243)
35 2gw1_A Mitochondrial precursor 99.6 3.8E-14 1.3E-18 182.8 23.4 249 1668-1929 205-478 (514)
36 3fp2_A TPR repeat-containing p 99.6 4.4E-14 1.5E-18 183.6 23.6 250 1668-1930 218-492 (537)
37 3uq3_A Heat shock protein STI1 99.6 3.7E-13 1.3E-17 156.2 28.0 215 1665-1891 18-235 (258)
38 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-13 6E-18 159.2 24.8 207 1682-1899 32-243 (252)
39 3u4t_A TPR repeat-containing p 99.6 7.7E-14 2.6E-18 164.1 22.0 237 1665-1910 16-265 (272)
40 2gw1_A Mitochondrial precursor 99.6 1.7E-13 5.7E-18 176.9 25.8 258 1666-1931 53-403 (514)
41 2vq2_A PILW, putative fimbrial 99.6 5.6E-13 1.9E-17 151.2 26.7 208 1681-1899 3-216 (225)
42 2pl2_A Hypothetical conserved 99.5 4.5E-13 1.5E-17 153.2 24.3 194 1726-1927 6-212 (217)
43 3vtx_A MAMA; tetratricopeptide 99.5 8.4E-13 2.9E-17 146.0 24.6 169 1725-1899 5-175 (184)
44 2q7f_A YRRB protein; TPR, prot 99.5 5E-13 1.7E-17 154.0 23.7 203 1666-1877 37-241 (243)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.4E-12 4.7E-17 151.6 27.0 198 1725-1929 37-238 (252)
46 3mkr_A Coatomer subunit epsilo 99.5 1.2E-12 4E-17 157.1 24.8 224 1687-1928 35-263 (291)
47 3sf4_A G-protein-signaling mod 99.5 1.5E-12 5.1E-17 162.1 26.0 265 1665-1932 22-339 (406)
48 4a1s_A PINS, partner of inscut 99.5 1.3E-12 4.4E-17 163.8 24.4 265 1665-1932 61-375 (411)
49 4abn_A Tetratricopeptide repea 99.5 8.2E-13 2.8E-17 169.8 22.9 207 1673-1888 89-317 (474)
50 3vtx_A MAMA; tetratricopeptide 99.5 4.2E-12 1.4E-16 140.3 25.0 166 1759-1929 4-170 (184)
51 3ro2_A PINS homolog, G-protein 99.5 1.5E-12 5E-17 156.8 23.0 265 1665-1932 18-335 (338)
52 1ouv_A Conserved hypothetical 99.5 3.3E-11 1.1E-15 142.3 32.4 225 1682-1929 2-251 (273)
53 2vq2_A PILW, putative fimbrial 99.4 1.4E-11 4.9E-16 139.5 27.0 200 1724-1929 7-211 (225)
54 4g1t_A Interferon-induced prot 99.4 1.5E-12 5E-17 166.7 20.7 255 1668-1930 154-460 (472)
55 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.5E-12 8.5E-17 151.1 20.7 215 1671-1898 24-248 (275)
56 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-12 8.4E-17 153.8 19.5 244 1682-1930 23-308 (311)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.2E-11 4.1E-16 145.2 24.9 222 1698-1929 17-244 (275)
58 1kl9_A Eukaryotic translation 99.4 3.5E-15 1.2E-19 162.3 -5.2 118 760-908 14-134 (182)
59 4g1t_A Interferon-induced prot 99.4 1.8E-11 6.2E-16 156.5 27.3 262 1666-1929 65-401 (472)
60 4a1s_A PINS, partner of inscut 99.4 5.7E-12 1.9E-16 157.9 21.1 245 1683-1932 45-335 (411)
61 2khj_A 30S ribosomal protein S 99.4 5.3E-13 1.8E-17 134.3 9.1 93 1444-1541 11-103 (109)
62 4i17_A Hypothetical protein; T 99.4 2.1E-11 7.3E-16 139.7 23.7 211 1682-1908 3-222 (228)
63 3mkr_A Coatomer subunit epsilo 99.4 6.1E-11 2.1E-15 142.1 27.5 204 1682-1899 61-269 (291)
64 3sf4_A G-protein-signaling mod 99.4 2.1E-11 7.1E-16 151.8 24.1 245 1683-1932 6-299 (406)
65 1luz_A Protein K3, protein K2; 99.4 6.5E-13 2.2E-17 127.2 7.9 77 1463-1541 6-84 (88)
66 4abn_A Tetratricopeptide repea 99.4 8.7E-12 3E-16 160.2 20.6 211 1701-1924 83-316 (474)
67 4gyw_A UDP-N-acetylglucosamine 99.4 1.5E-11 5.2E-16 164.4 23.6 164 1724-1891 8-173 (723)
68 3ro2_A PINS homolog, G-protein 99.4 1.7E-11 5.8E-16 147.5 21.5 243 1686-1932 5-295 (338)
69 2a19_A EIF-2- alpha, eukaryoti 99.4 7.2E-14 2.5E-18 151.4 0.2 104 1377-1484 14-120 (175)
70 1ouv_A Conserved hypothetical 99.3 2.1E-10 7.3E-15 135.3 29.6 212 1666-1899 20-256 (273)
71 2k52_A Uncharacterized protein 99.3 3.2E-12 1.1E-16 120.9 11.0 72 1465-1541 2-73 (80)
72 4gyw_A UDP-N-acetylglucosamine 99.3 3.2E-11 1.1E-15 161.4 23.7 167 1761-1932 10-177 (723)
73 2a19_A EIF-2- alpha, eukaryoti 99.3 1.7E-13 6E-18 148.4 1.2 103 761-890 15-120 (175)
74 1q8k_A Eukaryotic translation 99.3 1E-13 3.5E-18 162.5 -0.8 108 1376-1487 11-121 (308)
75 2khi_A 30S ribosomal protein S 99.3 6.5E-12 2.2E-16 127.4 12.5 95 738-835 10-105 (115)
76 2khj_A 30S ribosomal protein S 99.3 2.7E-12 9.3E-17 129.1 9.1 94 738-834 11-104 (109)
77 2k4k_A GSP13, general stress p 99.3 4.5E-12 1.5E-16 131.2 11.0 77 1464-1541 3-79 (130)
78 3ulq_A Response regulator aspa 99.3 1.3E-10 4.5E-15 144.6 25.9 248 1680-1933 91-372 (383)
79 4i17_A Hypothetical protein; T 99.3 7.2E-11 2.5E-15 135.3 21.1 192 1726-1929 8-209 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 1.4E-10 4.9E-15 126.6 22.3 163 1725-1891 8-172 (186)
81 1wi5_A RRP5 protein homolog; S 99.3 4.1E-12 1.4E-16 129.9 9.1 110 214-323 3-117 (119)
82 3as5_A MAMA; tetratricopeptide 99.3 1.3E-10 4.3E-15 127.0 21.2 166 1761-1931 9-175 (186)
83 2khi_A 30S ribosomal protein S 99.3 1E-11 3.5E-16 126.0 11.3 90 1368-1457 20-110 (115)
84 2cqo_A Nucleolar protein of 40 99.3 7.2E-12 2.5E-16 127.3 8.5 80 1463-1542 17-98 (119)
85 3qky_A Outer membrane assembly 99.2 1.6E-10 5.5E-15 135.6 20.4 178 1681-1862 10-228 (261)
86 2eqs_A ATP-dependent RNA helic 99.2 1.6E-11 5.6E-16 121.8 9.9 78 1462-1541 6-86 (103)
87 1luz_A Protein K3, protein K2; 99.2 9.5E-12 3.2E-16 119.2 7.4 78 755-834 5-85 (88)
88 2k4k_A GSP13, general stress p 99.2 2.6E-11 9E-16 125.5 9.8 82 1374-1455 3-84 (130)
89 3edt_B KLC 2, kinesin light ch 99.2 2.2E-10 7.6E-15 134.3 19.1 223 1667-1891 16-280 (283)
90 2k52_A Uncharacterized protein 99.2 5.6E-11 1.9E-15 112.3 10.9 74 758-835 2-75 (80)
91 2pzi_A Probable serine/threoni 99.2 1.6E-10 5.3E-15 155.3 19.1 185 1681-1878 389-583 (681)
92 3aev_A Translation initiation 99.2 1.7E-12 6E-17 150.4 -0.5 108 1376-1487 9-119 (275)
93 2pzi_A Probable serine/threoni 99.2 2.1E-10 7.2E-15 154.0 19.3 167 1736-1910 402-578 (681)
94 3nf1_A KLC 1, kinesin light ch 99.2 5.2E-11 1.8E-15 142.3 12.0 225 1665-1891 40-306 (311)
95 3q15_A PSP28, response regulat 99.2 2.3E-09 8E-14 133.1 27.3 239 1687-1933 102-369 (378)
96 2cqo_A Nucleolar protein of 40 99.2 2.9E-11 9.9E-16 122.9 8.0 90 1369-1458 13-105 (119)
97 4ga2_A E3 SUMO-protein ligase 99.2 5.5E-11 1.9E-15 127.4 10.0 133 1743-1877 13-148 (150)
98 1hz4_A MALT regulatory protein 99.2 6.6E-09 2.2E-13 128.4 30.2 266 1664-1931 26-324 (373)
99 1q8k_A Eukaryotic translation 99.2 4E-12 1.4E-16 149.1 0.8 107 759-892 11-120 (308)
100 3edt_B KLC 2, kinesin light ch 99.2 4.7E-10 1.6E-14 131.5 18.5 227 1698-1929 13-281 (283)
101 2eqs_A ATP-dependent RNA helic 99.1 9.5E-11 3.3E-15 116.3 10.1 82 1374-1457 8-93 (103)
102 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.8E-15 125.0 11.4 145 1766-1915 3-149 (150)
103 1qqe_A Vesicular transport pro 99.1 6.7E-10 2.3E-14 133.0 19.3 170 1693-1864 44-234 (292)
104 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.7E-14 131.1 21.2 203 1701-1926 32-266 (292)
105 3dra_A Protein farnesyltransfe 99.1 6.3E-09 2.2E-13 124.5 27.0 228 1668-1906 49-299 (306)
106 3urz_A Uncharacterized protein 99.1 6.4E-10 2.2E-14 126.1 17.4 179 1685-1891 3-185 (208)
107 3qky_A Outer membrane assembly 99.1 3.3E-09 1.1E-13 124.3 22.9 169 1726-1898 16-228 (261)
108 1hz4_A MALT regulatory protein 99.1 1.6E-08 5.3E-13 125.1 30.2 243 1687-1931 15-284 (373)
109 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.7E-14 130.0 19.9 180 1743-1930 102-285 (287)
110 2xm6_A Protein corresponding t 99.1 2.9E-08 1E-12 127.8 33.0 239 1667-1930 166-433 (490)
111 1wi5_A RRP5 protein homolog; S 99.1 1E-10 3.5E-15 119.5 7.7 96 1445-1545 3-99 (119)
112 3ulq_A Response regulator aspa 99.1 1E-09 3.5E-14 136.5 17.3 224 1665-1891 116-367 (383)
113 2xm6_A Protein corresponding t 99.1 5.6E-08 1.9E-12 125.3 33.7 236 1668-1928 95-359 (490)
114 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.1E-09 2.1E-13 119.4 21.6 163 1727-1891 6-212 (225)
115 2fo7_A Synthetic consensus TPR 99.1 5.3E-09 1.8E-13 107.2 19.0 129 1761-1891 2-131 (136)
116 2r5s_A Uncharacterized protein 99.0 8.4E-10 2.9E-14 121.3 13.5 162 1762-1929 8-173 (176)
117 3aev_A Translation initiation 99.0 3.5E-10 1.2E-14 131.2 10.7 76 1466-1541 9-85 (275)
118 2r5s_A Uncharacterized protein 99.0 1.4E-09 4.6E-14 119.6 15.1 160 1727-1891 8-172 (176)
119 2yhc_A BAMD, UPF0169 lipoprote 99.0 6.4E-09 2.2E-13 119.2 21.3 174 1685-1862 3-217 (225)
120 3qou_A Protein YBBN; thioredox 99.0 3.7E-09 1.3E-13 126.3 19.6 162 1726-1891 118-283 (287)
121 3urz_A Uncharacterized protein 99.0 3.8E-09 1.3E-13 119.6 18.7 163 1761-1929 5-186 (208)
122 3dra_A Protein farnesyltransfe 99.0 2.1E-08 7.2E-13 120.0 25.7 228 1692-1928 38-286 (306)
123 4gco_A Protein STI-1; structur 99.0 3.8E-09 1.3E-13 109.4 16.2 118 1753-1872 5-124 (126)
124 2vsy_A XCC0866; transferase, g 99.0 3.4E-09 1.2E-13 139.3 18.7 152 1743-1898 5-161 (568)
125 3q15_A PSP28, response regulat 99.0 8E-09 2.8E-13 128.2 19.1 224 1665-1891 114-364 (378)
126 4h7y_A Dual specificity protei 99.0 4.6E-09 1.6E-13 107.5 13.1 114 1790-1907 9-135 (161)
127 2vsy_A XCC0866; transferase, g 98.9 8.6E-09 3E-13 135.5 19.4 152 1773-1929 2-157 (568)
128 3dss_A Geranylgeranyl transfer 98.9 3.5E-07 1.2E-11 110.0 31.2 223 1668-1899 46-309 (331)
129 3cw2_C Translation initiation 98.9 6.3E-10 2.1E-14 129.0 6.2 78 1464-1541 7-85 (266)
130 2fo7_A Synthetic consensus TPR 98.9 4.9E-08 1.7E-12 99.8 19.1 132 1727-1862 3-136 (136)
131 1p5q_A FKBP52, FK506-binding p 98.9 5.1E-09 1.7E-13 128.1 13.6 144 1746-1891 132-293 (336)
132 1e3p_A Guanosine pentaphosphat 98.9 4.9E-11 1.7E-15 155.7 -4.6 129 1376-1542 607-743 (757)
133 1a17_A Serine/threonine protei 98.9 3.6E-08 1.2E-12 105.7 18.7 129 1761-1891 14-145 (166)
134 3gyz_A Chaperone protein IPGC; 98.9 3.4E-09 1.1E-13 113.6 10.1 107 1783-1891 25-132 (151)
135 2ifu_A Gamma-SNAP; membrane fu 98.9 3.4E-08 1.2E-12 119.0 20.0 218 1700-1922 5-254 (307)
136 3psi_A Transcription elongatio 98.9 1.6E-09 5.6E-14 147.2 8.4 81 1462-1543 896-977 (1219)
137 3gyz_A Chaperone protein IPGC; 98.9 2E-08 6.8E-13 107.6 14.7 113 1749-1863 24-138 (151)
138 3cdi_A Polynucleotide phosphor 98.8 3.1E-10 1.1E-14 147.8 0.0 116 1386-1541 582-698 (723)
139 2vgx_A Chaperone SYCD; alterna 98.8 4E-08 1.4E-12 104.8 15.6 117 1747-1865 7-125 (148)
140 4h7y_A Dual specificity protei 98.8 3.1E-08 1.1E-12 101.4 13.7 111 1680-1826 7-127 (161)
141 1xi4_A Clathrin heavy chain; a 98.8 4.3E-07 1.5E-11 123.3 28.5 145 1762-1920 1223-1375(1630)
142 2xcb_A PCRH, regulatory protei 98.8 1.7E-08 5.9E-13 106.6 12.4 118 1748-1867 5-124 (142)
143 2vyi_A SGTA protein; chaperone 98.8 9.8E-08 3.4E-12 97.3 17.4 117 1761-1879 13-130 (131)
144 2ifu_A Gamma-SNAP; membrane fu 98.8 5.6E-08 1.9E-12 117.1 18.1 193 1688-1885 38-254 (307)
145 3q7a_A Farnesyltransferase alp 98.8 2.1E-07 7.2E-12 112.4 22.8 229 1668-1907 70-344 (349)
146 3bzc_A TEX; helix-turn-helix, 98.8 1.7E-09 5.7E-14 141.6 4.8 79 1462-1541 648-726 (785)
147 2lni_A Stress-induced-phosphop 98.8 6E-08 2.1E-12 99.6 15.3 116 1761-1878 17-133 (133)
148 2c2l_A CHIP, carboxy terminus 98.8 4.4E-08 1.5E-12 116.5 16.2 191 1683-1891 1-198 (281)
149 1go3_E DNA-directed RNA polyme 98.8 1E-08 3.5E-13 113.7 9.6 79 1464-1544 77-171 (187)
150 2e2e_A Formate-dependent nitri 98.8 4.6E-08 1.6E-12 107.1 14.6 117 1773-1891 23-143 (177)
151 4gco_A Protein STI-1; structur 98.8 5.3E-08 1.8E-12 100.8 14.3 113 1789-1906 8-121 (126)
152 1p5q_A FKBP52, FK506-binding p 98.8 1.4E-08 4.8E-13 124.2 11.6 155 1774-1931 127-296 (336)
153 3cw2_C Translation initiation 98.8 3.6E-09 1.2E-13 122.6 5.6 78 758-835 8-87 (266)
154 3psf_A Transcription elongatio 98.8 9.3E-10 3.2E-14 147.4 0.1 81 1462-1543 899-980 (1030)
155 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.5E-07 5E-12 106.0 18.2 131 1728-1862 9-154 (213)
156 3upv_A Heat shock protein STI1 98.8 1.6E-07 5.5E-12 96.4 16.9 112 1761-1874 5-123 (126)
157 1na0_A Designed protein CTPR3; 98.7 2.5E-07 8.6E-12 93.3 18.0 115 1761-1877 10-125 (125)
158 3psi_A Transcription elongatio 98.7 1E-08 3.5E-13 139.5 9.7 82 1371-1452 895-977 (1219)
159 1elw_A TPR1-domain of HOP; HOP 98.7 1.8E-07 6.3E-12 93.4 16.7 111 1761-1873 5-116 (118)
160 1a17_A Serine/threonine protei 98.7 2.6E-07 8.8E-12 99.0 18.6 135 1793-1932 12-149 (166)
161 1xi4_A Clathrin heavy chain; a 98.7 6.1E-07 2.1E-11 121.9 25.8 219 1674-1928 1091-1344(1630)
162 4f3v_A ESX-1 secretion system 98.7 3E-08 1E-12 116.1 11.7 206 1665-1875 19-253 (282)
163 4aid_A Polyribonucleotide nucl 98.7 1.3E-09 4.4E-14 141.1 0.0 77 1463-1541 632-708 (726)
164 2nn6_I 3'-5' exoribonuclease C 98.7 2E-08 6.9E-13 112.1 9.2 79 1465-1543 78-165 (209)
165 2e2e_A Formate-dependent nitri 98.7 7.5E-08 2.6E-12 105.3 13.8 138 1744-1890 27-169 (177)
166 4ayb_E DNA-directed RNA polyme 98.7 2.4E-08 8.4E-13 109.9 9.2 79 1464-1544 77-170 (180)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 1.6E-07 5.6E-12 101.4 15.7 109 1761-1871 12-121 (164)
168 3bzc_A TEX; helix-turn-helix, 98.7 5.9E-09 2E-13 136.5 4.9 82 1370-1451 646-727 (785)
169 3rjv_A Putative SEL1 repeat pr 98.7 5.2E-07 1.8E-11 102.3 20.3 174 1704-1891 4-196 (212)
170 2c2l_A CHIP, carboxy terminus 98.7 6.4E-08 2.2E-12 115.1 13.2 188 1726-1928 5-198 (281)
171 2vgx_A Chaperone SYCD; alterna 98.7 7.9E-08 2.7E-12 102.5 12.5 110 1780-1891 7-117 (148)
172 3rjv_A Putative SEL1 repeat pr 98.7 4.6E-07 1.6E-11 102.8 19.2 176 1744-1929 3-197 (212)
173 3dss_A Geranylgeranyl transfer 98.7 2.5E-06 8.5E-11 102.6 26.4 222 1697-1928 40-303 (331)
174 2xcb_A PCRH, regulatory protei 98.7 5.1E-08 1.8E-12 102.8 9.9 109 1781-1891 5-114 (142)
175 3e4b_A ALGK; tetratricopeptide 98.7 6.8E-07 2.3E-11 113.9 22.1 186 1688-1891 178-386 (452)
176 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.6E-07 2.6E-11 100.1 20.1 125 1762-1891 8-149 (213)
177 2qfc_A PLCR protein; TPR, HTH, 98.6 9.7E-07 3.3E-11 105.3 22.0 165 1725-1891 75-265 (293)
178 3upv_A Heat shock protein STI1 98.6 3.4E-07 1.2E-11 93.9 15.5 112 1793-1909 3-121 (126)
179 4f3v_A ESX-1 secretion system 98.6 1.6E-07 5.5E-12 109.9 14.4 198 1698-1907 18-248 (282)
180 2lni_A Stress-induced-phosphop 98.6 3E-07 1E-11 94.3 14.7 119 1791-1914 13-132 (133)
181 3e4b_A ALGK; tetratricopeptide 98.6 1.3E-06 4.6E-11 111.1 23.8 170 1744-1928 196-386 (452)
182 1e3p_A Guanosine pentaphosphat 98.6 1.5E-09 5.1E-14 141.9 -3.7 78 757-835 663-744 (757)
183 2fbn_A 70 kDa peptidylprolyl i 98.6 2.8E-07 9.6E-12 103.0 15.2 128 1761-1890 39-184 (198)
184 3q7a_A Farnesyltransferase alp 98.6 1.7E-06 5.8E-11 104.5 22.6 232 1687-1927 55-329 (349)
185 1b89_A Protein (clathrin heavy 98.6 3.4E-08 1.2E-12 121.8 7.8 216 1667-1927 18-234 (449)
186 2qfc_A PLCR protein; TPR, HTH, 98.6 1.5E-06 5E-11 103.7 21.8 176 1681-1858 70-266 (293)
187 3q49_B STIP1 homology and U bo 98.6 3.7E-07 1.3E-11 94.7 14.5 99 1761-1861 10-109 (137)
188 1hxi_A PEX5, peroxisome target 98.6 2.2E-07 7.6E-12 95.3 12.5 98 1763-1862 20-118 (121)
189 2dba_A Smooth muscle cell asso 98.6 3.5E-07 1.2E-11 95.8 14.2 112 1761-1874 29-144 (148)
190 1elw_A TPR1-domain of HOP; HOP 98.6 8.7E-07 3E-11 88.4 16.5 113 1793-1910 3-116 (118)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 1E-07 3.5E-12 121.6 11.5 128 1761-1890 269-413 (457)
192 3m7n_A Putative uncharacterize 98.6 8.3E-08 2.8E-12 104.9 9.0 72 1466-1543 56-136 (179)
193 3psf_A Transcription elongatio 98.6 6.2E-09 2.1E-13 139.6 -0.1 82 1371-1452 898-980 (1030)
194 2bh8_A 1B11; transcription, mo 98.6 9.4E-08 3.2E-12 94.0 8.2 85 1376-1507 11-99 (101)
195 2vyi_A SGTA protein; chaperone 98.6 1.3E-06 4.5E-11 88.7 17.2 119 1792-1915 10-129 (131)
196 3q49_B STIP1 homology and U bo 98.6 7.2E-07 2.4E-11 92.5 15.4 104 1790-1897 5-109 (137)
197 1y14_B B16, RPB7, DNA-directed 98.6 1E-07 3.5E-12 103.8 9.1 76 1465-1543 80-168 (171)
198 2fbn_A 70 kDa peptidylprolyl i 98.6 1.1E-07 3.9E-12 106.2 9.9 150 1768-1920 12-176 (198)
199 1wao_1 Serine/threonine protei 98.6 9.1E-08 3.1E-12 122.7 9.9 168 1763-1932 9-200 (477)
200 3sz7_A HSC70 cochaperone (SGT) 98.5 6.4E-07 2.2E-11 96.7 14.9 104 1792-1899 9-113 (164)
201 3mv2_B Coatomer subunit epsilo 98.5 3E-06 1E-10 100.4 21.6 202 1671-1891 85-304 (310)
202 1go3_E DNA-directed RNA polyme 98.5 1.8E-07 6.2E-12 103.6 10.4 79 1375-1454 78-172 (187)
203 2xev_A YBGF; tetratricopeptide 98.5 1.4E-06 4.8E-11 89.2 16.5 112 1763-1874 5-121 (129)
204 2b8k_G B16, DNA-directed RNA p 98.5 9.6E-08 3.3E-12 106.7 8.1 77 1465-1544 80-169 (215)
205 1na0_A Designed protein CTPR3; 98.5 1.9E-06 6.6E-11 86.7 17.2 112 1794-1910 9-121 (125)
206 3u3w_A Transcriptional activat 98.5 1.9E-06 6.5E-11 102.7 19.7 155 1735-1891 85-265 (293)
207 3u64_A Protein TP_0956; tetrat 98.5 2.2E-06 7.4E-11 99.0 18.9 88 1808-1897 178-272 (301)
208 4gcn_A Protein STI-1; structur 98.5 1.2E-06 4.1E-11 90.6 15.2 107 1761-1868 9-121 (127)
209 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.1E-07 3.7E-12 121.4 8.9 148 1776-1926 250-412 (457)
210 2dba_A Smooth muscle cell asso 98.5 8.4E-07 2.9E-11 92.9 14.2 119 1791-1912 25-145 (148)
211 3u3w_A Transcriptional activat 98.5 1.5E-06 5.1E-11 103.6 18.1 167 1691-1859 80-267 (293)
212 1hxi_A PEX5, peroxisome target 98.5 6.7E-07 2.3E-11 91.7 13.0 100 1795-1898 18-118 (121)
213 4aid_A Polyribonucleotide nucl 98.5 1.3E-08 4.6E-13 131.6 0.0 81 1374-1455 633-713 (726)
214 3rkv_A Putative peptidylprolyl 98.5 8E-07 2.7E-11 95.7 13.9 113 1761-1875 12-144 (162)
215 1elr_A TPR2A-domain of HOP; HO 98.5 1.1E-06 3.8E-11 89.4 14.3 114 1761-1875 5-124 (131)
216 2c35_B Human RPB7, DNA-directe 98.5 1.8E-07 6.2E-12 102.0 8.6 76 1465-1543 78-168 (172)
217 2if4_A ATFKBP42; FKBP-like, al 98.5 1.4E-07 4.9E-12 115.3 8.6 147 1725-1891 179-327 (338)
218 2nn6_I 3'-5' exoribonuclease C 98.5 2.1E-07 7E-12 104.0 8.6 78 1375-1452 78-165 (209)
219 2z0s_A Probable exosome comple 98.5 1.5E-07 5.2E-12 107.4 7.6 77 1465-1543 63-143 (235)
220 3cdi_A Polynucleotide phosphor 98.4 2.2E-08 7.7E-13 130.5 0.0 83 1374-1457 623-705 (723)
221 1ihg_A Cyclophilin 40; ppiase 98.4 1E-06 3.5E-11 108.9 14.9 138 1725-1883 223-361 (370)
222 4ayb_E DNA-directed RNA polyme 98.4 5.9E-07 2E-11 98.8 10.2 78 1375-1453 78-170 (180)
223 2kck_A TPR repeat; tetratricop 98.4 1.1E-06 3.6E-11 87.0 10.7 99 1791-1891 3-105 (112)
224 1dce_A Protein (RAB geranylger 98.4 4.3E-06 1.5E-10 109.2 19.2 163 1743-1910 45-236 (567)
225 2je6_I RRP4, exosome complex R 98.4 4.3E-07 1.5E-11 104.2 7.9 78 1465-1544 71-151 (251)
226 2if4_A ATFKBP42; FKBP-like, al 98.4 6.3E-07 2.2E-11 109.5 9.8 101 1761-1863 231-333 (338)
227 2kck_A TPR repeat; tetratricop 98.4 1.8E-06 6.2E-11 85.3 11.4 102 1761-1862 7-110 (112)
228 1dce_A Protein (RAB geranylger 98.3 5E-06 1.7E-10 108.5 18.6 173 1668-1847 45-244 (567)
229 2b8k_G B16, DNA-directed RNA p 98.3 6.7E-07 2.3E-11 100.0 8.9 77 1376-1454 81-170 (215)
230 3h0g_G DNA-directed RNA polyme 98.3 2E-07 6.7E-12 101.4 4.4 77 1464-1543 80-169 (172)
231 3gw4_A Uncharacterized protein 98.3 6.2E-06 2.1E-10 91.5 16.8 150 1742-1891 7-175 (203)
232 1b89_A Protein (clathrin heavy 98.3 6.4E-07 2.2E-11 110.6 9.2 219 1668-1921 77-303 (449)
233 3gw4_A Uncharacterized protein 98.3 5.9E-06 2E-10 91.6 16.5 161 1772-1932 4-179 (203)
234 3m7n_A Putative uncharacterize 98.3 5.5E-07 1.9E-11 98.4 7.7 71 1376-1452 56-136 (179)
235 1y14_B B16, RPB7, DNA-directed 98.3 8.1E-07 2.8E-11 96.7 9.0 65 1376-1441 81-155 (171)
236 2xev_A YBGF; tetratricopeptide 98.3 8.6E-06 2.9E-10 83.3 16.1 102 1796-1899 4-110 (129)
237 2z0s_A Probable exosome comple 98.3 5.5E-07 1.9E-11 102.8 7.6 75 1375-1450 63-141 (235)
238 4gcn_A Protein STI-1; structur 98.3 5.3E-06 1.8E-10 85.7 14.3 98 1793-1892 7-112 (127)
239 3rkv_A Putative peptidylprolyl 98.3 6.3E-06 2.2E-10 88.6 15.2 116 1793-1910 10-142 (162)
240 3ro3_A PINS homolog, G-protein 98.3 3.8E-06 1.3E-10 88.6 13.2 131 1761-1891 10-157 (164)
241 1elr_A TPR2A-domain of HOP; HO 98.3 4.4E-06 1.5E-10 84.9 12.9 111 1793-1909 3-121 (131)
242 2ba0_A Archeal exosome RNA bin 98.3 1.3E-06 4.5E-11 99.1 9.6 77 1465-1543 54-131 (229)
243 3k9i_A BH0479 protein; putativ 98.3 1.4E-06 4.7E-11 88.4 7.9 91 1774-1866 4-98 (117)
244 2c35_B Human RPB7, DNA-directe 98.2 1.6E-06 5.5E-11 94.6 8.7 72 760-833 80-166 (172)
245 2hr2_A Hypothetical protein; a 98.2 7.1E-06 2.4E-10 87.3 12.6 101 1762-1864 13-137 (159)
246 4g26_A Pentatricopeptide repea 98.2 5E-05 1.7E-09 97.5 23.0 178 1727-1909 28-219 (501)
247 4b4t_Q 26S proteasome regulato 98.2 1.9E-05 6.3E-10 99.2 18.5 199 1691-1891 9-244 (434)
248 1ihg_A Cyclophilin 40; ppiase 98.2 6.2E-06 2.1E-10 101.9 13.8 138 1760-1920 223-361 (370)
249 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.1E-10 84.7 14.0 135 1725-1861 9-161 (164)
250 3mv2_B Coatomer subunit epsilo 98.2 5.4E-05 1.8E-09 89.7 20.4 181 1705-1899 85-287 (310)
251 2je6_I RRP4, exosome complex R 98.2 2.2E-06 7.7E-11 98.3 8.2 73 1376-1449 72-147 (251)
252 1zu2_A Mitochondrial import re 98.2 7.1E-06 2.4E-10 87.2 11.2 94 1772-1867 14-129 (158)
253 1hh2_P NUSA, N utilization sub 98.1 1.1E-06 3.7E-11 104.2 5.1 106 542-655 86-199 (344)
254 2hr2_A Hypothetical protein; a 98.1 1.4E-05 4.9E-10 85.0 12.6 104 1793-1898 10-135 (159)
255 2ba0_A Archeal exosome RNA bin 98.1 5.5E-06 1.9E-10 93.9 10.0 73 1376-1449 55-128 (229)
256 4b4t_Q 26S proteasome regulato 98.1 5E-05 1.7E-09 95.3 19.5 192 1666-1859 18-246 (434)
257 4g26_A Pentatricopeptide repea 98.1 0.00018 6.1E-09 92.3 24.3 181 1687-1873 27-220 (501)
258 1hh2_P NUSA, N utilization sub 98.1 8.7E-06 3E-10 96.5 10.9 120 716-850 85-211 (344)
259 1wao_1 Serine/threonine protei 98.1 1.3E-06 4.4E-11 112.0 3.7 130 1728-1861 9-153 (477)
260 3h0g_G DNA-directed RNA polyme 98.0 2.4E-06 8.3E-11 92.8 4.7 72 1376-1449 82-166 (172)
261 1zu2_A Mitochondrial import re 98.0 2E-05 6.9E-10 83.7 10.1 88 1808-1899 17-125 (158)
262 3k9i_A BH0479 protein; putativ 98.0 1.6E-05 5.6E-10 80.4 8.8 84 1744-1827 7-95 (117)
263 2kat_A Uncharacterized protein 97.9 5.9E-05 2E-09 75.7 11.9 78 1812-1891 4-81 (115)
264 2bh8_A 1B11; transcription, mo 97.9 1.8E-05 6.2E-10 77.7 7.7 85 668-799 12-99 (101)
265 1na3_A Designed protein CTPR2; 97.9 7.9E-05 2.7E-09 70.7 11.9 81 1794-1876 9-90 (91)
266 2kat_A Uncharacterized protein 97.9 4.1E-05 1.4E-09 76.9 10.2 82 1778-1861 3-85 (115)
267 2id0_A Exoribonuclease 2; RNAs 97.8 2.5E-05 8.7E-10 102.2 9.0 75 1464-1538 554-642 (644)
268 2l6j_A TPR repeat-containing p 97.8 2.3E-05 7.8E-10 77.5 6.0 91 1794-1886 4-101 (111)
269 3ayh_B DNA-directed RNA polyme 97.7 6.8E-05 2.3E-09 83.6 9.0 65 1465-1531 78-161 (203)
270 1na3_A Designed protein CTPR2; 97.7 0.00031 1E-08 66.5 12.4 81 1761-1843 10-91 (91)
271 2l6j_A TPR repeat-containing p 97.7 2E-05 6.7E-10 78.1 3.5 94 1761-1854 5-103 (111)
272 2ckz_B C25, DNA-directed RNA p 97.5 8.9E-05 3.1E-09 83.1 7.2 68 1464-1532 77-158 (218)
273 3ma5_A Tetratricopeptide repea 97.5 0.00024 8.3E-09 69.6 9.1 63 1829-1891 7-69 (100)
274 3u64_A Protein TP_0956; tetrat 97.5 0.0018 6E-08 75.0 16.6 110 1816-1928 140-268 (301)
275 2id0_A Exoribonuclease 2; RNAs 97.4 0.0002 6.8E-09 93.8 9.5 72 759-830 556-642 (644)
276 2kc7_A BFR218_protein; tetratr 97.4 0.00025 8.6E-09 68.8 7.9 60 1767-1826 7-68 (99)
277 2nn6_H Exosome complex exonucl 97.4 0.00013 4.4E-09 85.7 6.5 73 1376-1449 93-175 (308)
278 3ma5_A Tetratricopeptide repea 97.4 0.00032 1.1E-08 68.7 8.4 69 1791-1861 4-73 (100)
279 2vnu_D Exosome complex exonucl 97.4 0.00014 4.8E-09 96.9 7.1 70 1470-1539 671-760 (760)
280 2bx2_L Ribonuclease E, RNAse E 97.4 0.00029 9.8E-09 88.1 9.3 75 1464-1539 41-126 (517)
281 2kc7_A BFR218_protein; tetratr 97.4 0.00035 1.2E-08 67.7 8.0 68 1798-1867 4-73 (99)
282 3n71_A Histone lysine methyltr 97.3 0.0015 5.1E-08 83.2 15.6 121 1770-1891 319-463 (490)
283 2wp8_J Exosome complex exonucl 97.3 0.00017 5.7E-09 97.8 6.9 71 1469-1539 887-977 (977)
284 2nn6_H Exosome complex exonucl 97.3 0.00017 6E-09 84.6 6.1 78 1465-1544 92-179 (308)
285 1klx_A Cysteine rich protein B 97.3 0.0022 7.7E-08 66.9 14.1 106 1744-1858 12-126 (138)
286 3ayh_B DNA-directed RNA polyme 97.3 0.00035 1.2E-08 77.8 8.3 62 760-822 80-160 (203)
287 2bx2_L Ribonuclease E, RNAse E 97.2 0.0005 1.7E-08 85.9 9.1 76 1376-1451 43-129 (517)
288 3bee_A Putative YFRE protein; 97.2 0.0011 3.9E-08 64.1 9.5 69 1791-1861 3-75 (93)
289 1k0r_A NUSA; two component arr 97.2 0.00066 2.2E-08 80.6 9.3 100 738-850 103-215 (366)
290 3ly7_A Transcriptional activat 97.2 0.013 4.4E-07 70.7 20.5 171 1655-1862 165-343 (372)
291 3n71_A Histone lysine methyltr 97.2 0.0031 1E-07 80.3 15.9 126 1804-1930 319-465 (490)
292 1klx_A Cysteine rich protein B 97.1 0.0045 1.5E-07 64.6 14.1 109 1774-1892 9-126 (138)
293 3ly7_A Transcriptional activat 97.1 0.0086 2.9E-07 72.2 17.9 129 1776-1909 215-354 (372)
294 3esl_A Checkpoint serine/threo 97.1 0.014 4.8E-07 63.6 17.7 132 1744-1875 9-162 (202)
295 2ckz_B C25, DNA-directed RNA p 97.1 0.00074 2.5E-08 75.7 7.7 64 1377-1440 80-157 (218)
296 1pc2_A Mitochondria fission pr 97.1 0.0043 1.5E-07 65.1 12.8 81 1809-1891 14-99 (152)
297 2asb_A Transcription elongatio 97.0 0.0012 4.2E-08 74.1 8.8 70 1259-1348 7-83 (251)
298 1k0r_A NUSA; two component arr 97.0 0.0013 4.4E-08 78.2 8.9 74 1373-1452 123-205 (366)
299 2ja9_A Exosome complex exonucl 97.0 0.0014 4.9E-08 70.6 8.4 70 1466-1537 5-74 (175)
300 4a1g_A Mitotic checkpoint seri 97.0 0.0051 1.8E-07 64.3 12.2 128 1777-1912 7-148 (152)
301 2ja9_A Exosome complex exonucl 97.0 0.0016 5.6E-08 70.1 8.7 70 1376-1447 5-75 (175)
302 3esl_A Checkpoint serine/threo 96.9 0.02 6.7E-07 62.5 17.1 135 1775-1912 7-162 (202)
303 2asb_A Transcription elongatio 96.9 0.0023 7.9E-08 71.9 10.0 78 760-850 6-92 (251)
304 1pc2_A Mitochondria fission pr 96.9 0.0068 2.3E-07 63.6 12.8 91 1776-1867 14-109 (152)
305 3bee_A Putative YFRE protein; 96.8 0.0055 1.9E-07 59.2 10.5 63 1829-1891 6-71 (93)
306 2wp8_J Exosome complex exonucl 96.8 0.0011 3.7E-08 90.0 6.9 70 762-831 887-977 (977)
307 2vnu_D Exosome complex exonucl 96.8 0.0011 3.6E-08 88.5 6.8 69 763-831 671-760 (760)
308 4aez_C MAD3, mitotic spindle c 96.5 0.022 7.6E-07 63.2 14.0 112 1792-1911 70-196 (223)
309 4a1g_A Mitotic checkpoint seri 96.5 0.017 6E-07 60.3 12.0 112 1809-1928 6-129 (152)
310 4aez_C MAD3, mitotic spindle c 96.5 0.038 1.3E-06 61.3 15.3 127 1744-1875 52-197 (223)
311 2v5f_A Prolyl 4-hydroxylase su 96.4 0.025 8.4E-07 55.7 12.2 77 1794-1870 5-87 (104)
312 2wvi_A Mitotic checkpoint seri 96.4 0.025 8.4E-07 60.0 12.5 122 1783-1912 6-143 (164)
313 2wvi_A Mitotic checkpoint seri 96.0 0.025 8.7E-07 59.9 10.5 108 1814-1928 4-124 (164)
314 3qww_A SET and MYND domain-con 95.9 0.025 8.6E-07 70.7 11.6 84 1808-1891 313-410 (433)
315 3qww_A SET and MYND domain-con 95.8 0.029 9.8E-07 70.2 11.6 84 1772-1856 310-409 (433)
316 2v5f_A Prolyl 4-hydroxylase su 95.6 0.054 1.9E-06 53.2 10.4 68 1830-1899 6-80 (104)
317 3qwp_A SET and MYND domain-con 95.3 0.13 4.3E-06 64.4 14.9 88 1804-1891 297-399 (429)
318 2nn6_G Exosome complex exonucl 94.9 0.04 1.4E-06 64.1 8.0 71 1465-1538 124-194 (289)
319 3qwp_A SET and MYND domain-con 94.8 0.12 4.1E-06 64.7 12.4 90 1769-1859 296-401 (429)
320 2nn6_G Exosome complex exonucl 94.7 0.046 1.6E-06 63.6 7.6 71 1376-1448 125-195 (289)
321 1nzn_A CGI-135 protein, fissio 94.6 0.14 5E-06 51.7 10.1 81 1809-1891 17-102 (126)
322 3txn_A 26S proteasome regulato 94.2 3.5 0.00012 50.3 23.1 171 1690-1861 23-213 (394)
323 1nzn_A CGI-135 protein, fissio 94.2 0.37 1.2E-05 48.8 11.9 95 1772-1867 13-112 (126)
324 3txn_A 26S proteasome regulato 93.6 1.5 5.3E-05 53.5 18.4 92 1799-1890 104-208 (394)
325 3mkq_A Coatomer beta'-subunit; 92.8 2.1 7.3E-05 57.6 20.2 166 1690-1917 633-800 (814)
326 3mkq_A Coatomer beta'-subunit; 91.4 2.4 8.1E-05 57.2 18.2 156 1729-1927 633-793 (814)
327 4gns_B Protein CSD3, chitin bi 90.2 1.6 5.5E-05 57.6 13.8 58 1831-1888 339-396 (754)
328 3o48_A Mitochondria fission 1 89.7 1.1 3.8E-05 45.4 9.0 63 1829-1891 40-106 (134)
329 3spa_A Mtrpol, DNA-directed RN 88.5 2.7 9.2E-05 56.6 13.9 116 1791-1908 124-244 (1134)
330 4b4t_P 26S proteasome regulato 88.4 22 0.00077 44.2 22.0 98 1830-1927 138-245 (445)
331 1y8m_A FIS1; mitochondria, unk 88.2 4.2 0.00014 41.8 12.1 71 1793-1864 38-112 (144)
332 3spa_A Mtrpol, DNA-directed RN 88.1 3.1 0.00011 56.0 14.1 96 1726-1823 128-231 (1134)
333 4b4t_P 26S proteasome regulato 87.9 8.4 0.00029 48.1 17.6 172 1686-1861 137-327 (445)
334 3mkq_B Coatomer subunit alpha; 87.1 11 0.00037 40.5 15.2 27 1793-1819 33-60 (177)
335 3o48_A Mitochondria fission 1 87.1 3.2 0.00011 42.2 10.3 88 1777-1866 24-115 (134)
336 1y8m_A FIS1; mitochondria, unk 86.6 5.6 0.00019 40.9 12.0 85 1809-1898 22-110 (144)
337 3ffl_A Anaphase-promoting comp 84.4 4 0.00014 43.1 10.0 25 1864-1888 123-147 (167)
338 2r7d_A Ribonuclease II family 83.4 1.4 4.9E-05 55.1 7.2 59 1467-1538 402-460 (469)
339 2ff4_A Probable regulatory pro 82.4 8.9 0.0003 46.9 13.8 102 1771-1891 126-233 (388)
340 4b4t_R RPN7, 26S proteasome re 82.3 5.9 0.0002 49.2 12.3 102 1686-1791 131-239 (429)
341 3ffl_A Anaphase-promoting comp 81.5 10 0.00036 40.0 11.7 29 1830-1858 64-92 (167)
342 2rf4_A DNA-directed RNA polyme 79.7 3.2 0.00011 46.2 7.7 63 495-557 126-200 (214)
343 4gns_B Protein CSD3, chitin bi 77.3 9.4 0.00032 50.5 12.2 110 1744-1855 266-397 (754)
344 2rf4_A DNA-directed RNA polyme 76.9 6.2 0.00021 43.9 8.9 66 760-825 128-205 (214)
345 3mkq_B Coatomer subunit alpha; 76.5 43 0.0015 35.9 14.8 128 1732-1889 12-141 (177)
346 1qsa_A Protein (soluble lytic 76.3 1.1E+02 0.0036 39.8 21.5 116 1808-1928 229-347 (618)
347 4b4t_R RPN7, 26S proteasome re 75.8 7.3 0.00025 48.4 10.2 119 1743-1861 110-240 (429)
348 1zbp_A Hypothetical protein VP 74.7 13 0.00044 42.5 10.7 120 1804-1931 7-131 (273)
349 4b4t_S RPN3, 26S proteasome re 72.6 23 0.0008 44.3 13.3 138 1687-1826 137-303 (523)
350 2eqj_A Metal-response element- 69.4 20 0.00068 31.5 8.1 52 538-619 9-62 (66)
351 2ff4_A Probable regulatory pro 68.9 35 0.0012 41.5 13.9 68 1864-1934 172-239 (388)
352 3d0f_A Penicillin-binding 1 tr 68.7 8.1 0.00028 37.8 6.5 55 585-639 33-93 (106)
353 3h8z_A FragIle X mental retard 67.6 6.6 0.00023 39.6 5.6 97 585-705 14-115 (128)
354 3d0f_A Penicillin-binding 1 tr 66.7 12 0.0004 36.6 7.2 56 1377-1432 32-93 (106)
355 2r7d_A Ribonuclease II family 65.5 8.2 0.00028 48.3 7.3 59 760-830 402-460 (469)
356 4fhn_B Nucleoporin NUP120; pro 64.2 52 0.0018 46.2 15.9 92 1693-1786 849-964 (1139)
357 3h8z_A FragIle X mental retard 62.2 9.5 0.00032 38.5 5.5 56 761-816 14-71 (128)
358 4ady_A RPN2, 26S proteasome re 60.9 3E+02 0.01 37.2 21.1 179 1694-1877 78-276 (963)
359 1jjg_A M156R; beta barrel, S1 56.2 18 0.0006 33.6 5.6 63 582-646 29-94 (102)
360 4b4t_S RPN3, 26S proteasome re 55.2 19 0.00066 45.1 7.9 109 1682-1792 177-302 (523)
361 4hcz_A PHD finger protein 1; p 54.9 34 0.0012 29.1 6.6 35 585-619 16-52 (58)
362 3i4o_A Translation initiation 53.6 16 0.00054 33.6 5.0 62 1471-1538 15-78 (79)
363 2wpv_A GET4, UPF0363 protein Y 50.0 3.7E+02 0.013 31.4 19.6 20 1911-1930 199-218 (312)
364 2k5n_A Putative cold-shock pro 49.4 48 0.0016 30.1 7.5 48 1472-1526 3-52 (74)
365 1zbp_A Hypothetical protein VP 47.8 54 0.0018 37.4 9.3 116 1770-1891 7-128 (273)
366 1h9m_A MODG, molybdenum-bindin 46.5 70 0.0024 32.4 9.5 117 135-285 10-135 (145)
367 1wfq_A UNR protein; beta-barre 44.9 63 0.0021 30.4 7.8 56 1466-1527 13-69 (89)
368 1jjg_A M156R; beta barrel, S1 40.1 85 0.0029 29.2 7.4 65 963-1029 25-92 (102)
369 1h95_A CSD, Y-box binding prot 39.2 83 0.0028 28.8 7.5 57 1470-1526 7-65 (79)
370 2k5n_A Putative cold-shock pro 37.8 60 0.0021 29.4 6.2 47 589-642 3-52 (74)
371 1h95_A CSD, Y-box binding prot 35.6 1.2E+02 0.004 27.8 7.9 56 587-642 7-65 (79)
372 2yty_A Cold shock domain-conta 35.1 45 0.0015 31.3 5.1 52 585-641 15-67 (88)
373 4b9x_A TDRD1, tudor domain-con 34.6 3E+02 0.01 30.4 12.9 137 457-606 13-177 (226)
374 2ytx_A Cold shock domain-conta 32.9 41 0.0014 32.3 4.5 52 1468-1525 15-67 (97)
375 3lxu_X Tripeptidyl-peptidase 2 32.6 3E+02 0.01 38.6 14.5 84 1809-1895 1265-1348(1354)
376 2e5p_A Protein PHF1, PHD finge 32.5 1.6E+02 0.0055 25.8 7.4 35 585-619 22-58 (68)
377 3kf6_B Protein TEN1; OB fold, 30.3 1.3E+02 0.0044 28.9 7.2 54 127-196 14-69 (105)
378 4fhn_B Nucleoporin NUP120; pro 30.2 3.8E+02 0.013 37.4 15.7 121 1765-1889 817-964 (1139)
379 2xk0_A Polycomb protein PCL; t 30.2 1.7E+02 0.0057 25.9 7.2 52 538-619 11-62 (69)
380 4b9w_A TDRD1, tudor domain-con 29.8 5E+02 0.017 27.9 13.5 138 456-606 12-177 (201)
381 1h9m_A MODG, molybdenum-bindin 28.9 3.1E+02 0.011 27.3 11.1 51 972-1027 82-136 (145)
382 1wy6_A Hypothetical protein ST 28.2 1.2E+02 0.0041 30.9 7.0 35 1657-1691 12-46 (172)
383 1wy6_A Hypothetical protein ST 28.0 2.9E+02 0.0099 28.2 9.6 116 1697-1821 18-153 (172)
384 1c9o_A CSPB, cold-shock protei 27.3 2.9E+02 0.01 24.1 8.8 52 1263-1329 2-53 (66)
385 1wfq_A UNR protein; beta-barre 27.3 2.3E+02 0.008 26.5 8.6 54 1377-1435 14-68 (89)
386 2cpt_A SKD1 protein, vacuolar 27.3 2E+02 0.0069 28.4 8.6 17 1875-1891 30-46 (117)
387 2ijq_A Hypothetical protein; s 26.8 1.6E+02 0.0056 30.8 8.2 57 1835-1891 38-103 (161)
388 3i2z_B RNA chaperone, negative 26.7 2.5E+02 0.0085 25.0 8.4 53 1262-1329 5-58 (71)
389 2w2u_A Hypothetical P60 katani 26.6 1.6E+02 0.0055 27.2 7.2 45 1874-1931 30-74 (83)
390 2yty_A Cold shock domain-conta 26.6 1.3E+02 0.0044 28.2 6.6 52 1377-1433 14-66 (88)
391 3aqq_A Calcium-regulated heat 25.9 1.1E+02 0.0036 31.7 6.5 54 584-643 58-114 (147)
392 3i2z_B RNA chaperone, negative 25.2 1.5E+02 0.0052 26.4 6.6 51 588-642 5-58 (71)
393 2v6y_A AAA family ATPase, P60 24.6 1.8E+02 0.0062 26.8 7.3 27 1874-1910 22-48 (83)
394 2v6x_A Vacuolar protein sortin 24.5 3.4E+02 0.011 25.0 9.2 17 1875-1891 25-41 (85)
395 3kae_A CDC27, possible protein 24.3 2.3E+02 0.0078 29.9 8.4 73 1816-1888 49-139 (242)
396 3cam_A Cold-shock domain famil 24.0 1.3E+02 0.0043 26.7 5.8 49 590-642 3-54 (67)
397 2ra1_A Surface layer protein; 23.9 4.7E+02 0.016 31.1 11.9 89 1771-1865 114-209 (412)
398 4a5x_A MITD1, MIT domain-conta 23.6 2.7E+02 0.0093 25.8 8.3 18 1874-1891 27-44 (86)
399 3a0j_A Cold shock protein; OB- 23.3 2.5E+02 0.0085 25.2 7.7 52 1263-1329 2-53 (73)
400 4hcz_A PHD finger protein 1; p 22.8 1.3E+02 0.0043 25.8 5.0 35 761-795 16-52 (58)
401 2vb2_X Copper protein, cation 22.6 3.2E+02 0.011 25.5 8.6 53 1428-1480 17-76 (88)
402 4b9x_A TDRD1, tudor domain-con 22.5 4.7E+02 0.016 28.7 11.8 145 524-689 1-176 (226)
403 2wpv_A GET4, UPF0363 protein Y 22.5 9.5E+02 0.032 27.8 17.7 66 1826-1891 131-216 (312)
404 2qcp_X Cation efflux system pr 22.4 3.4E+02 0.012 24.8 8.6 53 1428-1480 9-68 (80)
405 2vb2_X Copper protein, cation 22.4 3E+02 0.01 25.7 8.3 60 811-886 17-76 (88)
406 2m0o_A PHD finger protein 1; t 22.3 2.2E+02 0.0076 25.6 6.7 52 538-619 22-75 (79)
407 4dt4_A FKBP-type 16 kDa peptid 21.9 7.1E+02 0.024 26.1 13.1 73 869-990 72-145 (169)
408 2qcp_X Cation efflux system pr 21.8 3.3E+02 0.011 24.9 8.3 60 811-886 9-68 (80)
409 1ya0_A SMG-7 transcript varian 21.8 3.6E+02 0.012 33.7 11.6 77 1761-1839 153-230 (497)
410 1wfd_A Hypothetical protein 15 21.7 3.3E+02 0.011 25.6 8.6 14 1877-1890 29-42 (93)
411 4b9w_A TDRD1, tudor domain-con 21.2 5E+02 0.017 27.9 11.4 134 542-689 12-176 (201)
412 1ya0_A SMG-7 transcript varian 21.2 2.1E+02 0.0072 35.8 9.3 73 1798-1872 156-229 (497)
413 2e5q_A PHD finger protein 19; 20.5 1.6E+02 0.0055 25.4 5.2 35 585-619 20-56 (63)
414 1g6p_A Cold shock protein TMCS 20.2 1.3E+02 0.0045 26.4 5.1 51 1264-1329 2-52 (66)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.96 E-value=8.4e-28 Score=280.62 Aligned_cols=210 Identities=20% Similarity=0.132 Sum_probs=181.6
Q ss_pred CCCEEEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecCCCCce
Q 000173 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338 (1935)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd~~~~g~~ 1338 (1935)
+|++++|+|++++++ |+||+++ +.+|++|.+|+ |. ++|+.|+|+|+. |. .+
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~------------------~~---~vGdevev~v~~-d~----~~ 56 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEG------------------QH---TVGDTVKGFAYT-DM----KQ 56 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGC------------------CC---CTTSEEEEEEEE-CT----TS
T ss_pred CCCEEEEEEEEEECC--EEEEEcC-CeEEEEEHHHC------------------cc---ccCCEEEEEEEE-CC----CC
Confidence 899999999999999 9999997 89999999998 33 699999999984 54 34
Q ss_pred EEEEeecccccCCCCCCCCCCCCCCCCCccchhhhccCCCCCEEEEEEEEEe-eceEEEEeCC-CcEEEEECccCCCccc
Q 000173 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYV 1416 (1935)
Q Consensus 1339 ~i~lSlr~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~G~~v~G~V~~v~-~~G~fV~l~~-~v~g~V~~s~lsd~~~ 1416 (1935)
++.+|++.+. +++|+++.|+|++++ ++|+||++|. +++||||+++++|...
T Consensus 57 r~iat~~~p~---------------------------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~ 109 (285)
T 3go5_A 57 KLRLTTLEVT---------------------------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE 109 (285)
T ss_dssp CEEEECSCCC---------------------------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG
T ss_pred CEEEeccccc---------------------------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccc
Confidence 6777754332 679999999999999 7999999997 7999999999998643
Q ss_pred CCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC-cccccccccccccCCCCCCcEEEeEEEEEeeceEEE-EEecCcee
Q 000173 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLV 1494 (1935)
Q Consensus 1417 ~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~-~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV-~l~~~~v~ 1494 (1935)
..+++||.|.++ +.+|+ ++||.+|+|+. ..++|. .....+++|++|+|+|+++++||+|| .+++ ++.
T Consensus 110 ----~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~----~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~ 178 (285)
T 3go5_A 110 ----LWPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLA----RPAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NML 178 (285)
T ss_dssp ----GSCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHC----CCCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEE
T ss_pred ----cccCCCCEEEEE-EEECC-CCcEEEEehhhhhcchhh----hhhhhCCCCCEEEEEEEEEeCCcEEEEEeCC-CeE
Confidence 246899999765 79998 79999999875 344553 23678999999999999999999999 9976 899
Q ss_pred EEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1495 Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
||||+||+++ .+++||.|+|+|++||++++||+||+|+..+
T Consensus 179 Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~ 219 (285)
T 3go5_A 179 GFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSF 219 (285)
T ss_dssp EEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCC
T ss_pred EEEEHHHccc--------cCCCCCEEEEEEEEEECCCCeEEEEeChhhh
Confidence 9999999984 4899999999999999989999999999765
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.95 E-value=9.3e-27 Score=271.85 Aligned_cols=226 Identities=18% Similarity=0.114 Sum_probs=195.2
Q ss_pred CCCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCCcc
Q 000173 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~~~ 663 (1935)
.+|+++.|+|+++.++|+||++ ++++||+|.+++. . ++||.|+|.|+ .|.+ +|+.+|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~~-~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDMK-QKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECTT-SCEEEECSC-------
T ss_pred cCCCEEEEEEEEEECCEEEEEc-CCeEEEEEHHHCc-------c---ccCCEEEEEEE-ECCC-CCEEEeccc-------
Confidence 4799999999999999999999 5999999999994 1 79999999998 4654 566677543
Q ss_pred ccccCCCCeEEEEEEEEe-cCcEEEEEEecC-ceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEec
Q 000173 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1935)
Q Consensus 664 ~~~~~~G~iv~g~V~~v~-~~g~~V~l~~~~-~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~ 741 (1935)
+.+++|+++.|+|++++ ++|+||.+ +. +++|+||.+++++... .++++||++...|.+|+ ++|+.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~~------~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELKE------LWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSGG------GSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -ccccCCCEEEEEEEEEccCceEEEEE--CCCCcEEEEEHHHCCcccc------cccCCCCEEEEEEEECC-CCcEEEEe
Confidence 46889999999999999 79999999 66 6999999999997432 26799999997788998 68999999
Q ss_pred cch-hcchhccCCccccccCCCCEEEEEEEEEecCeEEE-EECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEe
Q 000173 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1935)
Q Consensus 742 K~~-l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV-~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~v 819 (1935)
|+. ..++|... .+.+++|+.+.|+|++++++|+|| .+.+++.||+|+|++++ .+++||.|+|+|+++
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred hhhhhcchhhhh---hhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEEEEE
Confidence 986 56777643 456889999999999999999999 99999999999999974 489999999999999
Q ss_pred eCCCCeEEEeecccccCC--CCchhhHHHHHHH
Q 000173 820 NSETGRITLSLKQSCCSS--TDASFMQEHFLLE 850 (1935)
Q Consensus 820 d~e~~rl~LSlk~~~~~~--~d~~~i~~~l~~~ 850 (1935)
|++++||.||+|+..... .|++.|.+||.+.
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~~ 236 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLESN 236 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHHHT
T ss_pred ECCCCeEEEEeChhhhhccchHHHHHHHHHHhc
Confidence 999999999999986543 6678888888743
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.88 E-value=1.5e-21 Score=257.75 Aligned_cols=238 Identities=14% Similarity=0.229 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcC
Q 000173 1686 SFVWIKYMAFMLSMA-------DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV-KVFQRALQYC 1757 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~-------e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~-~vferAl~~~ 1757 (1935)
..+|.+|+.|+.+.+ ..++++.+|++||..+|... .+|+.|+.++...++ .+.|+ ++|+||+..+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~-----~lW~~ya~~~~~~~~--~~~a~r~il~rAi~~~ 374 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP-----EIWFNMANYQGEKNT--DSTVITKYLKLGQQCI 374 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHHHHHSC--CTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHhcCc--HHHHHHHHHHHHHHhC
Confidence 489999999988754 24567789999999888644 599999999999994 47785 9999999999
Q ss_pred CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHHHHHc-CHHHHH
Q 000173 1758 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKF-----------KH-----------SCKVWLRRVQRLLKQ-QQEGVQ 1813 (1935)
Q Consensus 1758 ~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~-----------~~-----------~~~vw~~~~~~l~~~-~~e~A~ 1813 (1935)
|.. .+|+.++.++++.+++++|+++|++++... |. ...+|+.|+.++.+. ..+.||
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 864 899999999999999999999999999863 32 356899999999999 999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1814 AVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1814 ~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
.+|.+|++..|... ..+|..+|++|++.+ ++++||.+|+++++.+|++.++|..|++++...|+.++||.+|+||+..
T Consensus 455 ~vf~~A~~~~~~~~-~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVT-PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSC-THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCC-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999844332 489999999999876 5999999999999999999999999999999999999999999999983
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1893 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1893 ~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..+++.++.+|..|++||.++|+.+.++.+++|+.+...
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333456778999999999999999999999999988654
No 4
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=6.8e-21 Score=230.83 Aligned_cols=242 Identities=17% Similarity=0.265 Sum_probs=212.2
Q ss_pred CCCHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH-------cCCC-----C
Q 000173 1683 PNSSFVWIKYMAFMLSM----ADV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNP-----P 1742 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~----~e~----dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~-------~g~~-----~ 1742 (1935)
|.+..+|..|+.|+.+. .+. ++|+.+|++|+...|... .+|+.|+.++.. .|+. .
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~-----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~ 79 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHhchhhhhccchhhcccc
Confidence 44568999999998875 344 789999999998766533 599999998764 4731 0
Q ss_pred HHHHHHHHHHHHh-cCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQ-YCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1743 ~e~a~~vferAl~-~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~-vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
.+.|+.+|+||++ ..|.. .+|..++.++.+.|++++|+++|+++++..|.+.. +|+.|+.++.+. ++++|+.+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2889999999999 56654 89999999999999999999999999999888876 999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFK-NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPP 1896 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~-~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~-~~~p 1896 (1935)
|++..|.. ..+|..++.+++. .|++++|+.+|+++++.+|.+.++|..|++++.+.|++++|+.+|++++.. .++|
T Consensus 160 a~~~~p~~--~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTCC--THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 99998876 4789999998875 699999999999999999999999999999999999999999999999994 2466
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1897 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1897 k~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.....+|..|+.+|..+|+.+.+..++++|++...
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 54447999999999999999999999999998754
No 5
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.85 E-value=6.2e-20 Score=236.29 Aligned_cols=252 Identities=18% Similarity=0.150 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHc---CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhccccch---------hh--------
Q 000173 1668 APRTPDEFERLVRS---SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREE---------NE-------- 1723 (1935)
Q Consensus 1668 ~~~a~~~ferll~~---~P~s~~lW~~y~~~~l----~~~e~dkAr~v~erAl~~i~~~ee---------~E-------- 1723 (1935)
....+..|++++.. +|++..+|..|+.|+. .+++++.+|.+|+|||. +|.... .|
T Consensus 64 ~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 64 KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp --CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccH
Confidence 34667899999864 7899999999999975 45689999999999996 554320 00
Q ss_pred ----------------------------HHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCC-HHHHHHHHHH
Q 000173 1724 ----------------------------KLNIWVAYFNLENEYGNPP-----EEAVVKVFQRALQYCDP-KKVHLALLGL 1769 (1935)
Q Consensus 1724 ----------------------------kl~lW~ayl~le~~~g~~~-----~e~a~~vferAl~~~~~-~~v~~~l~~i 1769 (1935)
...+|..|+.+|...+... .+.+..+|++|+..+|. ..+|+.|+.+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~ 222 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEY 222 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0117888888876542101 24577899999998876 4999999999
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHH----------------------------------------HHHHHHHHHHHc-C
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCK----------------------------------------VWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~----------------------------------------vw~~~~~~l~~~-~ 1808 (1935)
+.+.++.++|+++|++++.. |.+.. +|+.|+.++.++ .
T Consensus 223 ~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 99999999999999999988 76644 455555556667 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
.+.||.+|++| ..|.. ...+|..+|++++..+ ++++||.+|+++++.+|++.++|..|++++++.|+.++||.+|+
T Consensus 302 ~~~AR~i~~~A--~~~~~-~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL--GNEGV-GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH--TTSCC-CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--hCCCC-ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999 44543 3589999999999877 69999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|+. +. ..+|..|++||..+|+.+.++.+++++++.+.
T Consensus 379 r~~------k~-~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 379 RLE------KT-SRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HSC------CB-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHH------HH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 972 22 37999999999999999999999999998775
No 6
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.83 E-value=5.3e-19 Score=233.52 Aligned_cols=253 Identities=11% Similarity=0.141 Sum_probs=178.7
Q ss_pred CCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC-CCHHHHH
Q 000173 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-PPEEAVV 1747 (1935)
Q Consensus 1669 ~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~-~~~e~a~ 1747 (1935)
++.+..||+.|..+|.+...|+.|+.++.+.+.++.||.+|+||+...|... .+|+.|+.+|...++ ...+.++
T Consensus 49 ~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~-----~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA-----NIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp SCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHhhCCcchHHHHH
Confidence 3444566667777777777777777777777777777777777776666533 467777777766662 0046777
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHhc----CCCHHHHHHHHHHHHH------
Q 000173 1748 KVFQRALQYC---DPKKVHLALLGLYERTEQN--------KLADELLYKMIKKF----KHSCKVWLRRVQRLLK------ 1806 (1935)
Q Consensus 1748 ~vferAl~~~---~~~~v~~~l~~i~~~~~~~--------~~A~el~~~~~k~~----~~~~~vw~~~~~~l~~------ 1806 (1935)
.+|+||+..+ +.-.+|..|+.+..+.+.. +..+++|++++... +.+..+|..|+.|+..
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 7777777766 5556777777666554433 33446666666542 3356677777766542
Q ss_pred ---c-CHHHHHHHHHHHHHhCCCCCh------------------------------------------------------
Q 000173 1807 ---Q-QQEGVQAVVQRALLSLPRHKH------------------------------------------------------ 1828 (1935)
Q Consensus 1807 ---~-~~e~A~~ll~ralk~~p~~~~------------------------------------------------------ 1828 (1935)
+ +++.+|.+|+|+|. .|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 2 55666666666663 343322
Q ss_pred -------------------HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1829 -------------------IKFISQTAILEFKNG-------VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1829 -------------------~~~~~~~a~le~~~g-------~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+.+|..|+.+|...+ ..++.+.+|+++|..+|...++|..|++++...|+.+.|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 356666666665543 245678899999999999999999999999999999999
Q ss_pred H-HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1883 R-GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1883 r-~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
+ .+|+||+. ..|+.. .+|..|+.+|+..|+.+.|+.+|++|++.+
T Consensus 363 ~r~il~rAi~--~~P~s~-~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 363 ITKYLKLGQQ--CIPNSA-VLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6 99999998 556666 699999999999999999999999999865
No 7
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=9.7e-19 Score=228.60 Aligned_cols=238 Identities=17% Similarity=0.264 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHcC----CH----HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH-------cCCCCHH------
Q 000173 1686 SFVWIKYMAFMLSMA----DV----EKARSIAERALQTINIREENEKLNIWVAYFNLENE-------YGNPPEE------ 1744 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~----e~----dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~-------~g~~~~e------ 1744 (1935)
..+|..|+.++.... +. .+|..+|++|+...|... .+|+.|+.++.. .|+. +
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~-----~~w~~~~~~~~~~~~~~~~~g~~--~~a~~~~ 302 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP-----DIWYEAAQYLEQSSKLLAEKGDM--NNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH-----HHHHHHHHHHHHHHHHHHTTTCC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhchhhhhccch--hhhhhhh
Confidence 479999999987642 33 478899999998877533 699999999876 6853 5
Q ss_pred -HHHHHHHHHHh-cCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1745 -AVVKVFQRALQ-YCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-KVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1745 -~a~~vferAl~-~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~-~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
.|+.+|+||++ .+|. ..+|..++.++.+.|++++|+++|++++...|.+. .+|+.|+.++.+. ++++|+++|++|
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999997 6665 59999999999999999999999999999988875 6999999999988 999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCch
Q 000173 1820 LLSLPRHKHIKFISQTAILEF-KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL-SLPPK 1897 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~-~~~pk 1897 (1935)
++..|.. ..+|...|.+++ ..|++++|+.+|+++++.+|++.++|..|++++.+.|+.++||.+|++++.. ..+|.
T Consensus 383 l~~~~~~--~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDARTR--HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTTCC--THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccCCc--hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 9988765 367777777765 5899999999999999999999999999999999999999999999999984 23555
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
.+..+|..|+.||..+|+.+.+..++.||++....
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 55579999999999999999999999999998864
No 8
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1e-18 Score=211.59 Aligned_cols=218 Identities=17% Similarity=0.242 Sum_probs=196.0
Q ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 000173 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLS-------MADV-------EKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1670 ~a~~~ferll~~~P~s~~lW~~y~~~~l~-------~~e~-------dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le 1735 (1935)
++...|++++..+|+++.+|+.|+.++.+ .|++ ++|+.+|+||++.+++.. ..+|+.|+.++
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~----~~~~~~~~~~~ 109 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc----HHHHHHHHHHH
Confidence 45679999999999999999999999874 5875 999999999997555433 46999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-H-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c-CHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-K-VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQEG 1811 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~-v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~-~-~~e~ 1811 (1935)
...| ..+.|+.+|++|++..|.. . +|..++.++.+.+++++|+.+|+++++..|....+|+.++.+... . ++++
T Consensus 110 ~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRM--KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTT--CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcC--CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999 5699999999999988764 4 999999999999999999999999999888899999988887765 4 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE---YP-KRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~---~P-k~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
|+.+|+++++.+|.. ..+|..++.++.+.|++++|+.+|++++.. .| +...+|..|+.++.+.|+.+.|+.+++
T Consensus 188 A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999976 699999999999999999999999999996 44 478899999999999999999999999
Q ss_pred HHHhcCCCch
Q 000173 1888 RAISLSLPPK 1897 (1935)
Q Consensus 1888 ral~~~~~pk 1897 (1935)
+++. ..|+
T Consensus 266 ~a~~--~~p~ 273 (308)
T 2ond_A 266 RRFT--AFRE 273 (308)
T ss_dssp HHHH--HTTT
T ss_pred HHHH--Hccc
Confidence 9998 5554
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=7.1e-18 Score=220.44 Aligned_cols=251 Identities=14% Similarity=0.261 Sum_probs=209.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HHcCCCCH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE-NEYGNPPE 1743 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le-~~~g~~~~ 1743 (1935)
.++..+++..|++++..+|++..+|+.|+.++.+.+++++|+.+|+||+...| + ..+|+.|+.+. ...++.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~-----~~lw~~~~~~~~~~~~~~-- 96 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H-----IDLWKCYLSYVRETKGKL-- 96 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C-----HHHHHHHHHHHHHHTTTS--
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-----hHHHHHHHHHHHHHccch--
Confidence 45688899999999999999999999999999999999999999999998776 2 34899999765 455643
Q ss_pred HHH----HHHHHHHHhcCC----CHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhcCCC--HHHHHHHHHH-
Q 000173 1744 EAV----VKVFQRALQYCD----PKKVHLALLGLYER---------TEQNKLADELLYKMIKKFKHS--CKVWLRRVQR- 1803 (1935)
Q Consensus 1744 e~a----~~vferAl~~~~----~~~v~~~l~~i~~~---------~~~~~~A~el~~~~~k~~~~~--~~vw~~~~~~- 1803 (1935)
+.| +.+|++|+...+ +..+|..++.++.+ .++++.|+.+|+++++ .|.. ..+|..|..+
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYE 175 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHH
Confidence 444 459999998643 45999999999876 7899999999999997 3432 3455554443
Q ss_pred ----------------------------------------------------------------HHHc-----C----HH
Q 000173 1804 ----------------------------------------------------------------LLKQ-----Q----QE 1810 (1935)
Q Consensus 1804 ----------------------------------------------------------------l~~~-----~----~e 1810 (1935)
.... + ..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~ 255 (530)
T 2ooe_A 176 EGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITK 255 (530)
T ss_dssp HHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHH
T ss_pred HhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHH
Confidence 2211 0 12
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFK-------NGVAD-------RGRSMFEGILS-EYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~-------~g~~e-------~Ar~ife~al~-~~Pk~~dlw~~ya~~e~k 1875 (1935)
+|..+|++|+..+|.+ +.+|..||.++.+ .|+++ +|+.+|+++++ .+|++..+|..|+.++.+
T Consensus 256 ~a~~~y~~al~~~p~~--~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHH--PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5667899999999877 6999999999986 79977 99999999997 799999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.|++++|+.+|++++. .+|.....+|..|+.++.+.|+.+.|+.+|++|++
T Consensus 334 ~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp TTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999999999999 77766436899999999999999999999999975
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.79 E-value=3.1e-18 Score=220.51 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=202.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----cCC
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGN 1740 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e-~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~g~ 1740 (1935)
.+.+.++..|+|++...| +..+|..|+.|..+.++ .+..+.+|++|+.++.. +.....+|..|+.|+.. .+
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~--d~~s~~iW~~Yi~f~~~~~~~~~- 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFEN--YWDSYGLYKEYIEEEGKIEDEQT- 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTT--CTTCHHHHHHHHHHTSSCSSHHH-
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--CcccHHHHHHHHHHHHhchhhhH-
Confidence 457778889999999888 89999999999988874 57789999999998753 22234799999999653 34
Q ss_pred CCHHHHHHHHHHHHhcCCC--HH------------------------------------------------HHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRALQYCDP--KK------------------------------------------------VHLALLGLY 1770 (1935)
Q Consensus 1741 ~~~e~a~~vferAl~~~~~--~~------------------------------------------------v~~~l~~i~ 1770 (1935)
..+.++.+|+||++.... .. +|..|+.+.
T Consensus 104 -~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 -RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp -HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 358899999999984221 13 455555554
Q ss_pred HHcC--C-----hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh--------------
Q 000173 1771 ERTE--Q-----NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------- 1828 (1935)
Q Consensus 1771 ~~~~--~-----~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------- 1828 (1935)
.... - ...+..+|++++..+|..+.+|+.|+.++.++ ++++|+.+|+||+.. |....
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~ 261 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV 261 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH
Confidence 4321 1 34578899999999999999999999999998 999999999999999 87531
Q ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHH
Q 000173 1829 ------------------------IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG-DVDLIR 1883 (1935)
Q Consensus 1829 ------------------------~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g-~~e~ar 1883 (1935)
..+|..|+.++.+.++.++||.+|+++ +..+...++|..++.+|...+ +.++||
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHH
Confidence 145777777777888999999999999 544457789999999999877 699999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1884 GLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1884 ~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rA 1926 (1935)
.+|++++. ..|+.. .+|..|++||...|+.+.++.+|+|+
T Consensus 341 ~ife~al~--~~~~~~-~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLL--KHPDST-LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHH--HCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998 456666 58999999999999999999999996
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.75 E-value=1.6e-16 Score=198.34 Aligned_cols=252 Identities=12% Similarity=0.085 Sum_probs=221.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..++...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...| ..+
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 186 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVFNAQG--EIW 186 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHTTT--CHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3557888889999999999999999999999999999999999999999765531 357888888888888 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. ..|..++.++...+++++|...|++++...|.+..+|..++..+... ++++|...|++++..
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999988874 88999999999999999999999999999999999999999999988 999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHH
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFL 1902 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l 1902 (1935)
.|.. +.+|..+|.++.+.|++++|...|+++++..|.+.+.|..++.++.+.|++++|..+|++++. ..|... ..
T Consensus 267 ~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~ 341 (388)
T 1w3b_A 267 QPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFA-AA 341 (388)
T ss_dssp CSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCH-HH
T ss_pred CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcH-HH
Confidence 8876 588999999999999999999999999999999999999999999999999999999999988 667666 57
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1903 FKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1903 ~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
|..+.....+.|+.+.|...|++|++
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888889999999999999875
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.75 E-value=2.9e-16 Score=195.86 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=143.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..+..++...| ..++|.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-----YCVRSDLGNLLKALG--RLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-----THHHHHHHHHHHTTS--CHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcc--CHHHHH
Confidence 3444455555555555555555555555555555555555555555433311 234555555555555 335555
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
+.|+++++..|.. ..|..++.+|...|++++|.+.|++++...|.....|..++..+... ++++|...|++++...|.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5555555555543 55555555666666666666666666655555566666666655555 666666666666666554
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
+ ..+|..+|..++..|++++|...|++++...|.+.++|..++..+.+.|++++|..+|++++. ..|... ..|..
T Consensus 236 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~ 310 (388)
T 1w3b_A 236 H--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHA-DSLNN 310 (388)
T ss_dssp C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCH-HHHHH
T ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccH-HHHHH
Confidence 4 356666666666666666666666666666666666666666666666666666666666665 444444 35555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+.......|+.+.|...+++|++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555566666666666666654
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=9.3e-17 Score=198.47 Aligned_cols=259 Identities=11% Similarity=-0.003 Sum_probs=224.4
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|.. ...|..++.++...| ..+
T Consensus 78 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 150 (365)
T 4eqf_A 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNTS--HQQ 150 (365)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHccc--cHH
Confidence 3457778899999999999999999999999999999999999999999865532 468999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHH----------HHHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHc-CHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVH----------LALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLLKQ-QQE 1810 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~----------~~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~~~-~~e 1810 (1935)
.|...|+++++..|.. ..| ..++.+|...+++++|.+.|++++...|. ...+|..++..+... +++
T Consensus 151 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999998764 333 34588999999999999999999999998 899999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
+|...|+++++..|.. ..+|..+|.++...|++++|...|+++++..|.+..+|..++.++...|++++|+..|++++
T Consensus 231 ~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 231 RAIDAFNAALTVRPED--YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999887 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1891 SLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1891 ~~~~~pk~-----------~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
. +.|+. ...+|..+.......|..+.+..+.+++++.++..+
T Consensus 309 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~~ 361 (365)
T 4eqf_A 309 S--LQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361 (365)
T ss_dssp H--HHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTTT
T ss_pred H--hCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHhc
Confidence 8 33321 125788888888889999999999988877766554
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.1e-16 Score=189.61 Aligned_cols=251 Identities=11% Similarity=0.037 Sum_probs=169.9
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC-CCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g-~~~~e 1744 (1935)
++..++...|++++..+|++...|..++..+...+++++|...++++++..|.. ..+|..+..+....| .+ +
T Consensus 36 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~--~ 108 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN-----PVSWFAVGCYYLMVGHKN--E 108 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-----THHHHHHHHHHHHSCSCH--H
T ss_pred CCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhhhhH--H
Confidence 445566667777777777777777777777777777777777777777654432 236666666666666 43 6
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. ..|..++.+|...+++++|.+.|++++...+.....|..++..+... ++++|...|+++++.
T Consensus 109 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6777777777766653 66777777777777777777777777777766667777777777766 777777777777777
Q ss_pred CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000173 1823 LPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLS 1893 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~---------Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~ 1893 (1935)
.|.. ..+|..+|.+++..|++++|...|++++... |....+|..++.++...|++++|...|++++.
T Consensus 189 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-- 264 (330)
T 3hym_B 189 APED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV-- 264 (330)
T ss_dssp CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CCCC--hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 6655 4667777777777777777777777777665 44556677777777777777777777777776
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1894 LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1894 ~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
..|... ..|..+.......|+.+.|...|++|++
T Consensus 265 ~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 265 LIPQNA-STYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HSTTCS-HHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred hCccch-HHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 444444 4566666666666777777777766654
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=4.6e-16 Score=191.81 Aligned_cols=258 Identities=12% Similarity=0.037 Sum_probs=231.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.++...| ..+
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~~~~g--~~~ 149 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNES--LQR 149 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3456788899999999999999999999999999999999999999999765532 468999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHH----------------HHHHHHHHcCChHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 000173 1745 AVVKVFQRALQYCDPK-KVHL----------------ALLGLYERTEQNKLADELLYKMIKKFKH--SCKVWLRRVQRLL 1805 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~----------------~l~~i~~~~~~~~~A~el~~~~~k~~~~--~~~vw~~~~~~l~ 1805 (1935)
.|...|+++++..|.. ..|. .++.++ ..+++++|.+.|+++++..|. ...+|..++..+.
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 9999999999998864 3332 344555 899999999999999999998 8999999999999
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
.. ++++|...|++++...|.. ..+|..+|.++...|++++|...|++++...|.+..+|..++.++.+.|++++|..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPND--YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99 9999999999999999877 58999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchh-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhC
Q 000173 1885 LFERAISLSLPPKK-----------MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTLA 1935 (1935)
Q Consensus 1885 lferal~~~~~pk~-----------~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~~ 1935 (1935)
.|++++. +.|.. . ..|..+.......|+.+.+..+++++++.....++
T Consensus 307 ~~~~al~--~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 365 (368)
T 1fch_A 307 HFLEALN--MQRKSRGPRGEGGAMSE-NIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365 (368)
T ss_dssp HHHHHHH--HHHTC------CCCCCH-HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHH--hCCCCCCccccccchhh-HHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcC
Confidence 9999998 44444 4 68999999999999999999999999998887653
No 16
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=6.1e-16 Score=186.81 Aligned_cols=258 Identities=9% Similarity=0.031 Sum_probs=228.1
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...+++++|...++++++..|.. ...|..++.++...| ..+
T Consensus 34 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~~~--~~~ 106 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-----IAVHAALAVSHTNEH--NAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-----HHHHHHHHHHHHHcC--CHH
Confidence 3456778889999999999999999999999999999999999999999865532 458889999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLAL--------------LG-LYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l--------------~~-i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.|...|+++++..|.. ..|..+ +. ++...+++++|.+.|+++++..+....+|..++..+...
T Consensus 107 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 186 (327)
T 3cv0_A 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN 186 (327)
T ss_dssp HHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999998765 444444 44 577889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
++++|...|+++++..|.. ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.++...|+++.|...|+
T Consensus 187 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 187 NYDSAAANLRRAVELRPDD--AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999877 58999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCch------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1888 RAISLSLPPK------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1888 ral~~~~~pk------------~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
+++. ..|. .. ..|..+.......|+.+.|..++++|++.....+
T Consensus 265 ~a~~--~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 265 RAIY--MQVGGTTPTGEASREATR-SMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHH--HHTTSCC-----CCTHHH-HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHH--hCCccccccccchhhcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 9998 5555 44 6888888888999999999999999998877644
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=3.1e-16 Score=193.77 Aligned_cols=237 Identities=16% Similarity=0.056 Sum_probs=208.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~ 1763 (1935)
+...|...+..+.+.|++++|+..|+++++..|.. ...|..++.++...| ..+.|...|++|++..|. ...|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-----AEAWQFLGITQAENE--NEQAAIVALQRCLELQPNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCHHHH
Confidence 44559999999999999999999999999876532 468999999999999 559999999999999887 4999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHH----------HHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR----------VQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~----------~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
..++.+|...|++++|.+.|+++++..|.....|..+ +..+... ++++|..+|+++++..|...+..+|
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 9999999999999999999999999887766666555 7888888 9999999999999999985457999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
..+|.++...|++++|...|+++++..|.+..+|..++..+...|++++|+..|++++. ..|... ..|..+......
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 293 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFI-RSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCch-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 677776 688888888999
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 000173 1913 VGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1913 ~G~~e~a~~v~~rAle~v~ 1931 (1935)
.|+.+.|...|++|++.-.
T Consensus 294 ~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998764
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=9.5e-15 Score=178.43 Aligned_cols=252 Identities=10% Similarity=0.033 Sum_probs=121.9
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH------------HHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------------FNLE 1735 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay------------l~le 1735 (1935)
..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ......|..+ +...
T Consensus 53 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 130 (359)
T 3ieg_A 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE--QEEKEAESQLVKADEMQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc--cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444332200 0011233322 2333
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQ 1813 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~ 1813 (1935)
...| ..+.|...|+++++..|.. .+|..++.+|...+++++|.+.|++++...|....+|+.++..+... ++++|.
T Consensus 131 ~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGA--DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcc--CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444 2244555555555444432 44555555555555555555555555555555555555555555555 555555
Q ss_pred HHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcC
Q 000173 1814 AVVQRALLSLPRHKHIKFISQT------------AILEFKNGVADRGRSMFEGILSEYPKRTDL----WSIYLDQEIRLG 1877 (1935)
Q Consensus 1814 ~ll~ralk~~p~~~~~~~~~~~------------a~le~~~g~~e~Ar~ife~al~~~Pk~~dl----w~~ya~~e~k~g 1877 (1935)
..|+++++..|... ..|..+ |..++..|++++|...|++++...|.+... |..++..+...|
T Consensus 209 ~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 209 SEVRECLKLDQDHK--RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCccch--HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc
Confidence 55555555554442 222222 444555555555555555555555554432 333455555555
Q ss_pred CHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1878 DVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1878 ~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
++++|..+|++++. ..|... ..|..+.......|+.+.|...|++|++
T Consensus 287 ~~~~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 287 KPVEAIRICSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp CHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555 344444 3555555555555555555555555554
No 19
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=1.6e-15 Score=200.49 Aligned_cols=252 Identities=8% Similarity=0.002 Sum_probs=219.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|++...|..++..+.+.|++++|+.+++++++..|. ...+|..++.++...| ..++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g--~~~~ 391 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-----KAVTWLAVGIYYLCVN--KISE 391 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHHTT--CHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-----cHHHHHHHHHHHHHhc--cHHH
Confidence 44677888888888888888888888888888899999999999888865442 1468888889999999 5599
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1746 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1746 a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
|.++|+++++..|. ...|..++.+|.+.|++++|.++|++++...+.+..+|..++..+... ++++|.++|++++...
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999998876 489999999999999999999999999998888999999999999988 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE------YPKR-TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPP 1896 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~------~Pk~-~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~p 1896 (1935)
|.+ +.+|..++.++.+.|++++|..+|++++.. .|.+ ..+|..++..+.+.|++++|..+|++++. ..|
T Consensus 472 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p 547 (597)
T 2xpi_A 472 QYD--PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LST 547 (597)
T ss_dssp CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSS
T ss_pred CCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCC
Confidence 876 588999999999999999999999999988 5554 67899999999999999999999999998 556
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1897 KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1897 k~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
... ..|..+.......|+.++|...|++|++.
T Consensus 548 ~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 548 NDA-NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666 68888888888999999999999999875
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.69 E-value=6.5e-15 Score=179.88 Aligned_cols=255 Identities=11% Similarity=0.032 Sum_probs=210.3
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.+....|++ .+
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~-~~ 89 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF-----TAARLQRGHLLLKQGKL-DE 89 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCH-HH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----chHHHHHHHHHHHcCCh-HH
Confidence 4557788999999999999999999999999999999999999999999875532 25788888877777764 33
Q ss_pred HHHHHHHHHHhcC---CCH------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C
Q 000173 1745 AVVKVFQRALQYC---DPK------------KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1745 ~a~~vferAl~~~---~~~------------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~ 1808 (1935)
.....-+-.-... ... ..+..++.++...+++++|.+.|+++++..|....+|..++..+... +
T Consensus 90 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 90 AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCC
Confidence 2222222222222 222 33455588999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHc
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY------------LDQEIRL 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y------------a~~e~k~ 1876 (1935)
+++|...|+++++..|.. ..+|..+|.+++..|++++|...|+++++..|.....|..| +..+.+.
T Consensus 170 ~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 170 PRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999998877 58999999999999999999999999999999999988766 6668899
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAISLSLPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1877 g~~e~ar~lferal~~~~~pk~~k---~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
|++++|..+|++++. ..|.... ..|..+.......|+.+.|...++++++.
T Consensus 248 ~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 248 GRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp TCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999998 4454442 12444556777899999999999999875
No 21
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.69 E-value=4.1e-15 Score=188.89 Aligned_cols=255 Identities=10% Similarity=0.031 Sum_probs=224.1
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH------------HH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAY------------FN 1733 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay------------l~ 1733 (1935)
++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|... .....|..+ +.
T Consensus 74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 151 (450)
T 2y4t_A 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN--EEKEAQSQLIKSDEMQRLRSQAL 151 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999999999999999997655321 001344444 44
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1811 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~ 1811 (1935)
.....| ..+.|...|+++++..|.. .+|..++.+|.+.|++++|.+.|+++++..|.+..+|..++..+... ++++
T Consensus 152 ~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 152 NAFGSG--DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 477788 5599999999999998864 99999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQT------------AILEFKNGVADRGRSMFEGILSEYPKRTD----LWSIYLDQEIR 1875 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~------------a~le~~~g~~e~Ar~ife~al~~~Pk~~d----lw~~ya~~e~k 1875 (1935)
|...|++++...|.. ..+|..+ |..++..|++++|..+|++++...|.+.. +|..++.++.+
T Consensus 230 A~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999887 4666655 89999999999999999999999999854 78889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|++++|..+|++++. ..|... ..|..+.......|+.+.|...|++|++.
T Consensus 308 ~g~~~~A~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQ--MEPDNV-NALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998 667766 68888888899999999999999999864
No 22
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.68 E-value=9.2e-15 Score=185.66 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=227.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.++...| ..+
T Consensus 39 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~~~ 111 (450)
T 2y4t_A 39 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF-----TAARLQRGHLLLKQG--KLD 111 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHH
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcC--CHH
Confidence 4557789999999999999999999999999999999999999999999865532 468999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHH------------HHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1745 AVVKVFQRALQYCDPK----KVHLAL------------LGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~----~v~~~l------------~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
.|...|+++++..|.. ..|..+ +.+|...+++++|.+.|++++...|....+|..++..+...
T Consensus 112 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 9999999999998874 555555 55699999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY------------LDQEIR 1875 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y------------a~~e~k 1875 (1935)
++++|...|+++++..|.. +.+|..+|.+++..|++++|...|++++...|.+...|..+ +..+..
T Consensus 192 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 69999999999999999999999999999999999998887 889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMK---FLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k---~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|++++|..+|++++. ..|.... ..|..+.......|+.+.|...+++|++.
T Consensus 270 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 270 DGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998 5555431 35677777888899999999999999864
No 23
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.68 E-value=6.4e-15 Score=194.56 Aligned_cols=252 Identities=9% Similarity=0.006 Sum_probs=226.0
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..++...|++++.. |.+...|..++..+.+.|++++|..+|+++++..|.. ...|..++..+...| ..+.|.
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g--~~~~A~ 359 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-----LDVYPLHLASLHESG--EKNKLY 359 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----CTTHHHHHHHHHHHT--CHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCccc-----HHHHHHHHHHHHHhC--CHHHHH
Confidence 34455666666554 7889999999999999999999999999999765532 247999999999999 569999
Q ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
.+|+++++..|. ...|..++.+|.+.|++++|.++|+++++..+.....|..++..+.+. ++++|.++|+++++..|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988876 489999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKF 1901 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~----~~~pk~~k~ 1901 (1935)
+. .+|..++..+.+.|++++|..+|++++...|.+..+|..++.++.+.|++++|..+|++++.. ...|.....
T Consensus 440 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 TH--LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CS--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 64 899999999999999999999999999999999999999999999999999999999999984 335554226
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1902 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1902 l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..++....++|+.+.|..+|+++++.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999874
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.67 E-value=5.8e-15 Score=178.41 Aligned_cols=243 Identities=15% Similarity=0.106 Sum_probs=214.3
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
++..++...|++++..+|++...|..++..+...+ ++++|...|+++++..|.. ...|..+..++...| ..+
T Consensus 70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~--~~~ 142 (330)
T 3hym_B 70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-----GPAWIAYGHSFAVES--EHD 142 (330)
T ss_dssp TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-----THHHHHHHHHHHHHT--CHH
T ss_pred hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHcc--CHH
Confidence 44667788999999999999999999999999999 9999999999999765532 357999999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|+++++..|.. ..|..++.+|...+++++|.+.|+++++..|.+..+|..++..+... ++++|...|++++..
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999998875 88888999999999999999999999999999999999999999999 999999999999998
Q ss_pred CCC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 000173 1823 LPR-------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP 1895 (1935)
Q Consensus 1823 ~p~-------~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~ 1895 (1935)
.|. .....+|..+|.++...|++++|...|+++++..|.+..+|..++.++...|++++|...|++++. +.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~ 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LR 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cC
Confidence 632 122479999999999999999999999999999999999999999999999999999999999998 77
Q ss_pred chhHHHHHHHHHH-HHHHcCCHHH
Q 000173 1896 PKKMKFLFKKYLE-YEKSVGEEER 1918 (1935)
Q Consensus 1896 pk~~k~l~~~yl~-~E~~~G~~e~ 1918 (1935)
|... ..|..+.. ++...|+.+.
T Consensus 301 p~~~-~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 301 RDDT-FSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp SCCH-HHHHHHHHHHHTTTTC---
T ss_pred CCch-HHHHHHHHHHHHHhCchhc
Confidence 7776 45555554 5567777653
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=3.8e-15 Score=183.58 Aligned_cols=253 Identities=14% Similarity=0.056 Sum_probs=219.5
Q ss_pred CCCcHH-HHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCC
Q 000173 1668 APRTPD-EFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1668 ~~~a~~-~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
..++.. .|++++...|++ ...|...+..+...|++++|...|+++++..|.. ...|..++.++...| .
T Consensus 41 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g--~ 113 (368)
T 1fch_A 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTTQAENE--Q 113 (368)
T ss_dssp -----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----HHHHHHHHHHHHHTT--C
T ss_pred HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCc--C
Confidence 344555 666666666665 4679999999999999999999999999765532 468999999999999 5
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHH----------------HHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWL----------------RRVQRLL 1805 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~----------------~~~~~l~ 1805 (1935)
.+.|...|++|++..|.. ..|..++.+|...|++++|.+.|++++...|.....|. .++.++
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 599999999999998864 99999999999999999999999999999988877775 344444
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
.. ++++|...|+++++..|......+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++.|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66 99999999999999999854478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1885 LFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1885 lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
.|++++. ..|... ..|..+.......|+.+.|...|++|++.-.
T Consensus 273 ~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 273 AYRRALE--LQPGYI-RSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHH--HCTTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 9999999 667766 6788888888999999999999999998654
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=4.2e-15 Score=170.22 Aligned_cols=199 Identities=14% Similarity=0.039 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+++..|..++..+.+.|++++|...|+++++..|.. ...|..+..+....| ..+.|...|++|++..|.. .
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~P~~~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQD-----PEALYWLARTQLKLG--LVNPALENGKTLVARTPRYLG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHH
Confidence 7888999999999999999999999999999765532 358999999999999 5599999999999999875 8
Q ss_pred HHHHHHHHHHHc-----------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH
Q 000173 1762 VHLALLGLYERT-----------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI 1829 (1935)
Q Consensus 1762 v~~~l~~i~~~~-----------~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~ 1829 (1935)
.|..++.+|... |++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++.. . ++
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--TP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--CH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--ch
Confidence 999999999999 9999999999999999999999999999999999 9999999999999998 3 37
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.+|..+|.++...|++++|...|+++++.+|.+..+|..++.++...|++++|...|+++-.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998653
No 27
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.63 E-value=1.2e-13 Score=179.52 Aligned_cols=254 Identities=13% Similarity=0.029 Sum_probs=217.0
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...|++++|...|+++++..|.. ...|..++.++...|+ .+
T Consensus 38 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~--~~ 110 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH-----SKALLRRASANESLGN--FT 110 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTC--HH
T ss_pred hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHcCC--HH
Confidence 4669999999999999999999999999999999999999999999999865532 3466666666666663 24
Q ss_pred HHHH----------------------------------------------------------------------------
Q 000173 1745 AVVK---------------------------------------------------------------------------- 1748 (1935)
Q Consensus 1745 ~a~~---------------------------------------------------------------------------- 1748 (1935)
.|..
T Consensus 111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 4444
Q ss_pred ---------------------------------HHHHHHhcCCCH--------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000173 1749 ---------------------------------VFQRALQYCDPK--------KVHLALLGLYERTEQNKLADELLYKMI 1787 (1935)
Q Consensus 1749 ---------------------------------vferAl~~~~~~--------~v~~~l~~i~~~~~~~~~A~el~~~~~ 1787 (1935)
.|+++++..|.. ..|..++.++...+++++|.+.|++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555442 357777788899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 000173 1788 KKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1788 k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw 1866 (1935)
...|. ...|+.++..+... ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|.+..+|
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99888 99999999999888 9999999999999999876 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..++.++...|++++|..+|++++. ..|... ..|..+.......|+.+.|...|++|++.-.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKL--KFPTLP-EVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 566666 5788888888999999999999999988654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=7e-14 Score=168.65 Aligned_cols=235 Identities=12% Similarity=0.030 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~ 1763 (1935)
+...|...+..+...+++++|..+|+++++..|.. ...|..++..+...| ..+.|...|+++++..|. ...|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPER-----EEAWRSLGLTQAENE--KDGLAIIALNHARMLDPKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCcCCHHHH
Confidence 34568899999999999999999999999876532 458888899999999 559999999999999886 4899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHH--------------HH-HHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRR--------------VQ-RLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~--------------~~-~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..++.+|...+++++|.+.|+++++..+.....|..+ +. .+... ++++|...|+++++..|..
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~- 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND- 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC-
Confidence 9999999999999999999999999999888888777 55 35555 9999999999999999876
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|++++|...|++++. ..|... ..|..+.
T Consensus 172 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-~~~~~l~ 247 (327)
T 3cv0_A 172 -AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYV-RVMYNMA 247 (327)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999 666666 5788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
......|+.+.|...+++|++.-.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~ 271 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQV 271 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC
Confidence 888899999999999999987654
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.6e-14 Score=179.74 Aligned_cols=237 Identities=11% Similarity=0.054 Sum_probs=200.1
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000173 1678 LVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1757 (1935)
Q Consensus 1678 ll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~ 1757 (1935)
++..+|++..+|..++..+...+++++|...|++|++..|.. ..+|..+..+....|. +.+.|...|++|++.+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~-----~~a~~~~g~~l~~~g~-d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN-----YTVWHFRRVLLKSLQK-DLHEEMNYITAIIEEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC-----HHHHHHHHHHHHHccc-CHHHHHHHHHHHHHHC
Confidence 345678889999999999999999999999999999765532 4689999999899994 1599999999999999
Q ss_pred CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1758 DPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1758 ~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
|.. .+|..++.+|...+++++|...|++++...|.+..+|+.++..+... ++++|...|++++...|.+ ..+|..+
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~l 240 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQR 240 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHH
Confidence 875 99999999999999999999999999999999999999999999999 9999999999999999987 5899999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1836 AILEFK-NGVADRG-----RSMFEGILSEYPKRTDLWSIYLDQEIRLG--DVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1836 a~le~~-~g~~e~A-----r~ife~al~~~Pk~~dlw~~ya~~e~k~g--~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
|.++.. .|..++| ...|++++..+|.+..+|+.++.++...| ++++|...++++ . ..|... ..+..+.
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~-~al~~La 316 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSP-YLIAFLV 316 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCH-HHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCH-HHHHHHH
Confidence 999998 5665777 58899999999999999999999998887 688899988887 5 555554 4555555
Q ss_pred HHHHHcC--------C-HHHHHHHHHHH
Q 000173 1908 EYEKSVG--------E-EERIEYVKQKA 1926 (1935)
Q Consensus 1908 ~~E~~~G--------~-~e~a~~v~~rA 1926 (1935)
++..+.| + .++|..+|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5555443 2 47788888887
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=4.4e-14 Score=175.66 Aligned_cols=233 Identities=8% Similarity=0.015 Sum_probs=208.6
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD-VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e-~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~ 1743 (1935)
.++..+|...|+++|..+|++..+|..++..+..+++ +++|...|++|++..|.. ..+|..+..+....|.+
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-----~~a~~~~g~~~~~~g~~-- 182 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-----YQVWHHRRVLVEWLRDP-- 182 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHTCC--
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHccCH--
Confidence 3558899999999999999999999999999999996 999999999999765532 46999999999999966
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CHHHH-----HHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ--QQEGV-----QAV 1815 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~--~~e~A-----~~l 1815 (1935)
+.|...|++|++..|.+ ..|..++.++.+.|++++|.+.|++++...|.+..+|+.++..+... ..++| ...
T Consensus 183 ~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 183 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 99999999999999875 99999999999999999999999999999999999999999999994 54666 589
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------C-HHHHHH
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNG--VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG--------D-VDLIRG 1884 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g--~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g--------~-~e~ar~ 1884 (1935)
|++|+...|.+ ..+|..++.++...| ++++|...++++ ...|.+..++..+++++.+.| + .++|..
T Consensus 263 ~~~Al~l~P~~--~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~ 339 (382)
T 2h6f_A 263 TLEMIKLVPHN--ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 339 (382)
T ss_dssp HHHHHHHSTTC--HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHCCCC--HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999988 589999999999888 689999999998 889999999999999999874 2 589999
Q ss_pred HHHHH-HhcCCCchhHHHHHHHHHHHH
Q 000173 1885 LFERA-ISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1885 lfera-l~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+|+++ +. +.|.+. .+|..+....
T Consensus 340 ~~~~l~~~--~DP~r~-~~w~~~~~~l 363 (382)
T 2h6f_A 340 LCEILAKE--KDTIRK-EYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHT--TCGGGH-HHHHHHHHHH
T ss_pred HHHHHHHH--hCchhH-HHHHHHHHHH
Confidence 99999 87 888887 5787776543
No 31
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.60 E-value=1.2e-17 Score=181.56 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEe--CCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l--~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++|+++.|+|++|+++|+||+| .++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 47999999999999999999999 5789999999999999999999999999999999999999999999999999888
Q ss_pred ccccccccccCCCCCCcEEEeEEEEEee-ceEEEEEecCceeEEeeccccCcc
Q 000173 1454 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSED 1505 (1935)
Q Consensus 1454 ~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~FV~l~~~~v~Gl~h~sels~~ 1505 (1935)
||... ...++.|+++.|.|+++++ || |.|.+ +++||+|+|+.++.
T Consensus 93 p~~~~----~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~ 138 (182)
T 1kl9_A 93 EAIKC----EDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFD 138 (182)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHH
T ss_pred hHHHH----HHhccCCCEEEEEEEEchhhcC--CcccC-ChhheEEeeecchh
Confidence 77432 4578999999999999998 99 78877 89999999987665
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=5.2e-14 Score=165.56 Aligned_cols=237 Identities=8% Similarity=-0.004 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----H
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----K 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~ 1760 (1935)
+...|+.++..+...+++++|+..|+++++..|... ..|..++..+...| ..+.|...|+++++..+. .
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~ 74 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP-----YIYNRRAVCYYELA--KYDLAQKDIETYFSKVNATKAKS 74 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS-----TTHHHHHHHHHHTT--CHHHHHHHHHHHHTTSCTTTCCH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHh--hHHHHHHHHHHHHhccCchhHHH
Confidence 346788999999999999999999999998765432 37888888999999 459999999999994322 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|.+.|+++++..|....+|..++..+... ++++|...|+++++..|.. ..+|..+|...
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~ 152 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD--PKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc--HHHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999 9999999999999998777 68999999666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC-CCch----hHHHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD---VDLIRGLFERAISLS-LPPK----KMKFLFKKYLEYEK 1911 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~---~e~ar~lferal~~~-~~pk----~~k~l~~~yl~~E~ 1911 (1935)
+..+++++|...|+++++.+|.+...|..++..+...++ .+.|...|++++... ..|. .....|..+..+..
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 666799999999999999999999999999999999988 888999999999831 0122 11145667777788
Q ss_pred HcCCHHHHHHHHHHHHHHH
Q 000173 1912 SVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1912 ~~G~~e~a~~v~~rAle~v 1930 (1935)
..|+.+.|...|++|++.-
T Consensus 233 ~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALD 251 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 8999999999999998753
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.5e-13 Score=159.68 Aligned_cols=222 Identities=12% Similarity=0.008 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------- 1759 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------- 1759 (1935)
..|...+..+...+++++|...|+++++.. . . ..+|..++..+...| ..+.|...|+++++..|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-~----~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~ 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-D----ITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-C----THHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-c----HHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccchHH
Confidence 444555555555555555555555555432 1 1 234444444444555 225555555555544332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1760 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1760 -~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
..+|..++.+|...+++++|.+.|++++...+. .. .+... ++++|...|++++...|.. ..+|..+|.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~-------~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 147 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-AD-------ILTKLRNAEKELKKAEAEAYVNPEK--AEEARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-------HHHHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-hH-------HHHHHhHHHHHHHHHHHHHHcCcch--HHHHHHHHH
Confidence 144555555555555555555555555544432 11 12222 3455555555555444332 344555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
+++..|++++|...|++++...|.+..+|..++..+...|++++|...|++++. ..|... ..|..+.......|+.+
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~-~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFV-RAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCHHHH-HHHHHHHHHHHHHhhHH
Confidence 555555555555555555555555555555555555555555555555555554 333333 34444444444455555
Q ss_pred HHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEY 1929 (1935)
Q Consensus 1918 ~a~~v~~rAle~ 1929 (1935)
.|...+++|++.
T Consensus 225 ~A~~~~~~a~~~ 236 (258)
T 3uq3_A 225 SALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 34
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=4.4e-14 Score=162.81 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVH 1763 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~ 1763 (1935)
.+..|...+..+...+++++|...|+++++..|.. ..+|..++..+...| ..+.|...|+++++..|. ..+|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~ 94 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-----AIPYINFANLLSSVN--ELERALAFYDKALELDSSAATAY 94 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcchHHH
Confidence 45677888888888888999999998888754432 357888888888888 458888999999888775 4888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
..++.+|...+++++|.+.|+++++..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|.+++..
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence 88888999999999999999999988888888999999888888 9999999999999888766 57888889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1911 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~ 1911 (1935)
|++++|...|++++...|.+..+|..++.++...|++++|...|++++. ..|... ..|..+..+..
T Consensus 173 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~~~~l~~ 238 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHM-LALHAKKLLGH 238 (243)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCH-HHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchH-HHHHHHHHHHh
Confidence 9999999999999999998888899999999999999999999999888 566555 35554444433
No 35
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.8e-14 Score=182.82 Aligned_cols=249 Identities=10% Similarity=0.028 Sum_probs=200.9
Q ss_pred CCCcHHHHHHHHH-----c--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVR-----S--S-------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1733 (1935)
Q Consensus 1668 ~~~a~~~ferll~-----~--~-------P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~ 1733 (1935)
..+|...|++++. . + |++...|..++..+...|++++|...|+++++..|. ...|..++.
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~l~~ 278 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYMAL 278 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc------HHHHHHHHH
Confidence 5566777777776 3 3 455678888888888888888888888888876553 457888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEG 1811 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~ 1811 (1935)
++...|++ +.|...|+++++..|.. .+|..++.+|...+++++|...|++++...|....+|..++..+... ++++
T Consensus 279 ~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 279 IMADRNDS--TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp HHHTSSCC--TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHH
T ss_pred HHHHCCCH--HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHH
Confidence 88888855 88888888888887754 78888888888888888888888888888888888888888888888 8888
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHH
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIR---LGDVDLI 1882 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d------lw~~ya~~e~k---~g~~e~a 1882 (1935)
|...|+++++..|... .+|..+|.+++..|++++|..+|++++...|.+.. +|..++..+.. .|+++.|
T Consensus 357 A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 357 CETLFSEAKRKFPEAP--EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHSTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHcccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 8888888888887764 78888888888888888888888888888877644 88888888888 8888888
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
...|++++. ..|... ..|..+.......|+.+.|...|++|++.
T Consensus 435 ~~~~~~a~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 435 TNLLEKASK--LDPRSE-QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 888888887 556666 56777777778888888888888888764
No 36
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.58 E-value=4.4e-14 Score=183.64 Aligned_cols=250 Identities=12% Similarity=0.042 Sum_probs=214.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC
Q 000173 1668 APRTPDEFERLVRSSPNSSFV-------WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1740 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~l-------W~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~ 1740 (1935)
..++...|++++..+|++... |..++.++...+++++|...|+++++..|. ...|..+..++...|+
T Consensus 218 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHhcC
Confidence 446777889999999998765 555556778889999999999999986553 3578888888888885
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1741 PPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1741 ~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
+ +.|...|+++++..|.. .+|..++.+|...+++++|.+.|++++...|....+|..++..+... ++++|...|++
T Consensus 292 ~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 292 S--QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp C--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 99999999999998874 89999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHc----------CCHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL------WSIYLDQEIRL----------GDVDLI 1882 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl------w~~ya~~e~k~----------g~~e~a 1882 (1935)
+++..|.+. .+|..+|.++...|++++|...|++++...|.+... +...+.++... |++++|
T Consensus 370 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 370 TKLKFPTLP--EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHhCCCCh--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 999998874 899999999999999999999999999988765443 44556777777 999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1883 RGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
...|++++. ..|... ..|..+.......|+.+.|...|++|++.-
T Consensus 448 ~~~~~~a~~--~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 448 IKLLTKACE--LDPRSE-QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH--hCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999998 667766 678888888889999999999999998763
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.7e-13 Score=156.25 Aligned_cols=215 Identities=7% Similarity=-0.024 Sum_probs=193.2
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-h-hhHHHHHHHHHHHHHHcCCCC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE-E-NEKLNIWVAYFNLENEYGNPP 1742 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e-~Ekl~lW~ayl~le~~~g~~~ 1742 (1935)
.++..+|...|++++..+ ++...|..++..+...+++++|...++++++..|... + .....+|..+..++...+ .
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 94 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--D 94 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--C
T ss_pred hccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--c
Confidence 455788899999999988 8899999999999999999999999999998655321 1 111478889999999999 5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
.+.|...|+++++..+... ++...+++++|.+.|++++...+....+|..++..+... ++++|...|++++.
T Consensus 95 ~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5999999999999998854 455556678999999999999999999999999999999 99999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++..+...|+++.|...|++++.
T Consensus 168 ~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 168 RAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCccc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99886 589999999999999999999999999999999999999999999999999999999999998
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.8e-13 Score=159.22 Aligned_cols=207 Identities=12% Similarity=0.029 Sum_probs=178.7
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000173 1682 SPNS-SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1759 (1935)
Q Consensus 1682 ~P~s-~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~- 1759 (1935)
+|.+ ...|..++..+...+++++|...|+++++..|.. ..+|..++.++...| ..+.|.+.|+++++..|.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-----ADAHAALAVVFQTEM--EPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCcCc
Confidence 4554 7888999999999999999999999999765432 357888888888888 459999999999988875
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k--~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..+|..++.+|...+++++|.+.|++++. ..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ--PSVALEMA 182 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc--HHHHHHHH
Confidence 48899999999999999999999999988 6777888999999999888 9999999999999998876 58899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.+++..|++++|...|++++...|.+.+.|..++.++...|+.++|+.+|++++. ..|...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 243 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSL 243 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCH
Confidence 9999999999999999999999999999999999999999999999999999988 555554
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=7.7e-14 Score=164.13 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=204.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
.++..+|...|++++..+|++...|..++..+...+++++|...++++++ .+...+ -....|..+..++...| ..+
T Consensus 16 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-~~~~~~~~lg~~~~~~~--~~~ 91 (272)
T 3u4t_A 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-AKSADFEYYGKILMKKG--QDS 91 (272)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-CCHHHHHHHHHHHHHTT--CHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-HHHHHHHHHHHHHHHcc--cHH
Confidence 44577889999999999999999999999999999999999999999997 442221 12456889999999999 559
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS 1822 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~ 1822 (1935)
.|...|++|++..|.. .+|..++.+|...+++++|.+.|++++...|....+|+.++..++.. ++++|.+.|+++++.
T Consensus 92 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998875 99999999999999999999999999999999999999999445555 999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1823 LPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEY---PKR-----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1823 ~p~~~~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~---Pk~-----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.|.. ...|...|..+...|+ +++|...|+++++.. |.. ..+|..++.++...|++++|...|++++.
T Consensus 172 ~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 172 KPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp STTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887 5899999999998898 899999999999886 552 35788999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHH
Q 000173 1892 LSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1892 ~~~~pk~~k~l~~~yl~~E 1910 (1935)
+.|.+. ..|.....+.
T Consensus 250 --~~p~~~-~a~~~l~~~~ 265 (272)
T 3u4t_A 250 --LDPTNK-KAIDGLKMKL 265 (272)
T ss_dssp --HCTTCH-HHHHHHC---
T ss_pred --cCccHH-HHHHHhhhhh
Confidence 667766 4565554443
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.7e-13 Score=176.86 Aligned_cols=258 Identities=10% Similarity=-0.020 Sum_probs=222.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh-----------------------
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREEN----------------------- 1722 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~----------------------- 1722 (1935)
++..+|...|++++..+|++...|..++..+...|++++|+..|+++++..|.....
T Consensus 53 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557788899999999999999999999999999999999999999998765422111
Q ss_pred ---------------------------------------------------hHHHHHHHHHHHHHH---cCCCCHHHHHH
Q 000173 1723 ---------------------------------------------------EKLNIWVAYFNLENE---YGNPPEEAVVK 1748 (1935)
Q Consensus 1723 ---------------------------------------------------Ekl~lW~ayl~le~~---~g~~~~e~a~~ 1748 (1935)
.....|+........ .| ..+.|..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~ 210 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPE--SYDKADE 210 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTT--HHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhc--cHHHHHH
Confidence 002334444433333 56 4599999
Q ss_pred HHHHHHh-----c--CC-------C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHH
Q 000173 1749 VFQRALQ-----Y--CD-------P-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGV 1812 (1935)
Q Consensus 1749 vferAl~-----~--~~-------~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A 1812 (1935)
.|+++++ . .| . ...|..++.+|...|++++|...|++++...|. ..+|..++..+... ++++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHH
Confidence 9999999 4 22 2 288999999999999999999999999999998 99999999999999 99999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1813 QAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1813 ~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
...|+++++..|... .+|..+|.+++..|++++|...|++++...|.+..+|..++.++...|+++.|..+|++++.
T Consensus 290 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 366 (514)
T 2gw1_A 290 YNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR- 366 (514)
T ss_dssp GGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 999999999998874 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1893 SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1893 ~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
..|... ..|..+.......|+.+.|...+++|++.-.
T Consensus 367 -~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 367 -KFPEAP-EVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp -HSTTCS-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HcccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 555555 5788888888899999999999999988644
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=5.6e-13 Score=151.20 Aligned_cols=208 Identities=13% Similarity=0.047 Sum_probs=187.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1759 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~- 1759 (1935)
.+|++...|..++..+...|++++|+..|+++++..|.. ..+|..++.++...| ..+.|...|+++++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-----ELAWLVRAEIYQYLK--VNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTC
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-----hHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCC
Confidence 468889999999999999999999999999999865532 358888899999999 559999999999999876
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1760 KKVHLALLGLYERT-EQNKLADELLYKMIK--KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~-~~~~~A~el~~~~~k--~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
...|..++.+|... +++++|.+.|++++. ..+....+|..++..+... ++++|...|+++++..|.. ..+|..+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l 153 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF--PPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHH
Confidence 48999999999999 999999999999998 5566789999999999999 9999999999999999876 6899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEYP-KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~P-k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
|.+++..|++++|...|++++...| .+...|...+.++...|+.+.+..+++.++. ..|...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~ 216 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSE 216 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999999999999999 9999999999999999999999999999987 455544
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=4.5e-13 Score=153.23 Aligned_cols=194 Identities=14% Similarity=0.078 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|..+.......| ..+.|...|++|++..|.. ..|..++.+|.+.|++++|...|+++++..|++...|+.++..+
T Consensus 6 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALG--RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 47888888889999 5599999999999999875 99999999999999999999999999999999999999999988
Q ss_pred HHc------------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1805 LKQ------------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1805 ~~~------------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
... ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|+++++.. .+..+|..++.+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 763 6899999999999999987 5899999999999999999999999999999 999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
+...|++++|...|++++. ..|... ..|..+.......|+.+.|...|+++-
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDL-DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999 777777 578888888888999999999888764
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=8.4e-13 Score=145.96 Aligned_cols=169 Identities=15% Similarity=0.072 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..+|..+...+...| ..++|...|++|++.+|.. ..|..++.+|.+.+++++|.+.+.++....+....+|..++..
T Consensus 5 ~~iy~~lG~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKG--DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 468999999999999 4599999999999999875 9999999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... +++.|...+.++++..|.+ ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++..+.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999 9999999999999999887 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 000173 1883 RGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1883 r~lferal~~~~~pk~~ 1899 (1935)
...|++|+. +.|+++
T Consensus 161 ~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHh--CCccCH
Confidence 999999999 777765
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=5e-13 Score=153.97 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=179.6
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~ 1745 (1935)
++..+|...|++++..+|++...|..++..+...+++++|...++++++..+. ...+|..++.++...| ..+.
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~la~~~~~~~--~~~~ 109 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-----AATAYYGAGNVYVVKE--MYKE 109 (243)
T ss_dssp -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTT--CHHH
T ss_pred hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-----chHHHHHHHHHHHHhc--cHHH
Confidence 45778888999999999999999999999999999999999999999976553 2468889999999999 5599
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1746 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1746 a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
|...|+++++..|. ..+|..++.+|...+++++|.+.|++++...+....+|..++..+... ++++|...|+++++..
T Consensus 110 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 110 AKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999876 489999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
|.. ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.+....+
T Consensus 190 ~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 190 PGH--ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TTC--HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred ccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 876 5899999999999999999999999999999999999998887765544
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.4e-12 Score=151.61 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..+|..++..+...|++ +.|...|+++++..|. ...|..++.+|...+++++|.+.|++++...+....+|..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNT--EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCT--GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 56899999999999965 9999999999999876 48999999999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHH--hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALL--SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk--~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
+... ++++|.++|++++. ..|. ...+|..+|.+++..|++++|...|+++++..|.+..+|..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHH
Confidence 9999 99999999999998 4443 36899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..+|++++. ..|... ..|..+..+....|+.+.|...++++++.
T Consensus 193 ~A~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQ--GGGQNA-RSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHT--TSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCcCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998 666666 56777788888899999999999999875
No 46
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.50 E-value=1.2e-12 Score=157.10 Aligned_cols=224 Identities=10% Similarity=0.020 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCC-HHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDP-KKVH 1763 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~--~~~-~~v~ 1763 (1935)
..+.-++..++.+|+++.|+..++.. .. ..+..+..++.+....+ ..+.|.+.|++++.. .|. ..+|
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~----~~----~~~~a~~~la~~~~~~~--~~~~A~~~l~~ll~~~~~P~~~~~~ 104 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS----SA----PELQAVRMFAEYLASHS--RRDAIVAELDREMSRSVDVTNTTFL 104 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT----SC----HHHHHHHHHHHHHHCST--THHHHHHHHHHHHHSCCCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc----CC----hhHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcccCCCCHHHH
Confidence 34445555566666666665544321 10 11223333444444444 346666666666543 232 2556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1764 ~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
+.++.+|.+.|++++|.+.|++ +.+..+|..++..+.+. ++++|.+.|+++++..|......+...|..+....
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCc
Confidence 6666666666666666666655 45666666666666666 66666666666666655542112222233334444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH-HHHH
Q 000173 1843 GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE-RIEY 1921 (1935)
Q Consensus 1843 g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e-~a~~ 1921 (1935)
|++++|..+|++++..+|.+..+|+.++..+.+.|++++|...|++++. ..|..+ ..|..++.+....|... .+..
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~--~~p~~~-~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD--KDSGHP-ETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHcCCCHHHHHH
Confidence 5666666666666666666666666666666666666666666666665 555555 34555555555555543 3455
Q ss_pred HHHHHHH
Q 000173 1922 VKQKAME 1928 (1935)
Q Consensus 1922 v~~rAle 1928 (1935)
+++++++
T Consensus 257 ~~~~~~~ 263 (291)
T 3mkr_A 257 YLSQLKD 263 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.5e-12 Score=162.13 Aligned_cols=265 Identities=10% Similarity=0.004 Sum_probs=219.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.++..+|...|++++...|++ ..+|..++..+...|++++|...|++|+...... .......+|..+..++...|
T Consensus 22 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 101 (406)
T 3sf4_A 22 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 101 (406)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC
Confidence 455778899999999999988 4689999999999999999999999999753321 12233567888888889999
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHhcC-
Q 000173 1740 NPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQ--------------------NKLADELLYKMIKKFK- 1791 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~--------------------~~~A~el~~~~~k~~~- 1791 (1935)
..+.|...|++|++..+.. .+|..++.+|...|+ +++|.+.|++++..+.
T Consensus 102 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 102 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5599999999999876532 689999999999999 9999999999987642
Q ss_pred -----CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1792 -----HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1792 -----~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
....+|..++..+... ++++|...|+++++..+.... ..+|..+|.+++..|++++|...|++++...|.
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 3356789999999999 999999999999988765432 348999999999999999999999999988766
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1862 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1862 ~------~dlw~~ya~~e~k~g~~e~ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
. ..+|..++.++...|++++|...|++++.. ...+... ..|..+.......|+.+.|...+++|++...
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4 568899999999999999999999999972 1122223 4677777788889999999999999998865
Q ss_pred h
Q 000173 1932 S 1932 (1935)
Q Consensus 1932 ~ 1932 (1935)
.
T Consensus 339 ~ 339 (406)
T 3sf4_A 339 E 339 (406)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.3e-12 Score=163.79 Aligned_cols=265 Identities=9% Similarity=0.009 Sum_probs=219.0
Q ss_pred ccCCCCcHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHcC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSS----FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~----~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.++..+|...|++++...|++. .+|..++..+...|++++|...|++|+..... ........+|..+..++...|
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 4567889999999999999986 58999999999999999999999999975321 112234578888889999999
Q ss_pred CCCHHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHhcC----
Q 000173 1740 NPPEEAVVKVFQRALQYCD------P-KKVHLALLGLYERTEQ-----------------NKLADELLYKMIKKFK---- 1791 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~------~-~~v~~~l~~i~~~~~~-----------------~~~A~el~~~~~k~~~---- 1791 (1935)
..+.|...|++|++..+ . ...|..++.+|...++ +++|.+.|++++..++
T Consensus 141 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 141 --RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 55999999999998842 1 2789999999999999 9999999999887642
Q ss_pred --CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 000173 1792 --HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-- 1862 (1935)
Q Consensus 1792 --~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-- 1862 (1935)
....+|..++..+... ++++|...|++++...+.... ..+|..+|.+++..|++++|...|++++...|..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 2355889999999999 999999999999998765321 2488999999999999999999999999987753
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1863 ----TDLWSIYLDQEIRLGDVDLIRGLFERAISLS----LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1863 ----~dlw~~ya~~e~k~g~~e~ar~lferal~~~----~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
..+|..++.++...|++++|..+|++++... ..+..+ ..|..+.......|+.+.|...+++|++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA-RACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999721 122223 46777778888899999999999999987653
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=8.2e-13 Score=169.83 Aligned_cols=207 Identities=10% Similarity=-0.008 Sum_probs=188.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000173 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1935)
Q Consensus 1673 ~~ferll~~~P~s~~lW~~y~~~~l~~~e~-dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfe 1751 (1935)
..++......|++...|..++..+...+++ ++|...|++|++..|.. ...|..+..++...| ..++|.+.|+
T Consensus 89 ~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~~~~~g--~~~~A~~~~~ 161 (474)
T 4abn_A 89 QQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-----VEAWNQLGEVYWKKG--DVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHT--CHHHHHHHHH
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 455666677899999999999999999999 99999999999875532 468999999999999 5599999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------cCHHHHH
Q 000173 1752 RALQYCDPKKVHLALLGLYERT---------EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK---------QQQEGVQ 1813 (1935)
Q Consensus 1752 rAl~~~~~~~v~~~l~~i~~~~---------~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~---------~~~e~A~ 1813 (1935)
+|++..|....|..++.+|... +++++|.+.|++++...|.+..+|+.++..+.. .++++|.
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999989999999999999 999999999999999999999999999998875 2699999
Q ss_pred HHHHHHHHhCC---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1814 AVVQRALLSLP---RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1814 ~ll~ralk~~p---~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
..|++|++..| .. ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++.++...|++++|...+.+
T Consensus 242 ~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 242 SAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999988 55 699999999999999999999999999999999999999999999999998888876654
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=4.2e-12 Score=140.31 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=157.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1759 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1759 ~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
...+|+.++.+|.+.|++++|.+.|+++++..|++..+|..++..+... ++++|...+.+++...|.. ..+|..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS--AEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh--HHHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999 9999999999999999887 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
.+...++++.|...|++++...|.+.++|..++.++.+.|++++|...|++++. ..|... ..|..........|+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~--~~p~~~-~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS--IKPGFI-RAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH--hcchhh-hHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999 777777 68888888888999999
Q ss_pred HHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEY 1929 (1935)
Q Consensus 1918 ~a~~v~~rAle~ 1929 (1935)
+|...|++|++.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=1.5e-12 Score=156.82 Aligned_cols=265 Identities=11% Similarity=0.008 Sum_probs=215.7
Q ss_pred ccCCCCcHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcC
Q 000173 1665 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYG 1739 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s----~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g 1739 (1935)
.++..+|...|++++...|++ ..+|..++..+...|++++|...+++|+...... .......+|..+..++...|
T Consensus 18 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 456788999999999999998 5788899999999999999999999999753321 12233568888888889999
Q ss_pred CCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHhc--
Q 000173 1740 NPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQ--------------------NKLADELLYKMIKKF-- 1790 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~~~--------------------~~~A~el~~~~~k~~-- 1790 (1935)
..+.|...|++|++..+. ...|..++.+|...++ +++|.+.|++++...
T Consensus 98 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 98 --NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 559999999999987542 1589999999999999 999999999988753
Q ss_pred ----CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1791 ----KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1791 ----~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+....+|..++..+... ++++|...|++++...+.... ..+|..+|.+++..|++++|..+|++++...|.
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 22356788999999999 999999999999987654321 348999999999999999999999999988765
Q ss_pred C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1862 R------TDLWSIYLDQEIRLGDVDLIRGLFERAISLS----LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1862 ~------~dlw~~ya~~e~k~g~~e~ar~lferal~~~----~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
. ..+|..++.++...|++++|...|++++... .++... ..|..+.......|+.+.|...+++|++..+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG-RACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4 5678899999999999999999999998721 111223 4677777888889999999999999998765
Q ss_pred h
Q 000173 1932 S 1932 (1935)
Q Consensus 1932 ~ 1932 (1935)
+
T Consensus 335 ~ 335 (338)
T 3ro2_A 335 E 335 (338)
T ss_dssp -
T ss_pred h
Confidence 3
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=3.3e-11 Score=142.28 Aligned_cols=225 Identities=8% Similarity=-0.120 Sum_probs=187.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhcC
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YGNPPEEAVVKVFQRALQYC 1757 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~g~~~~e~a~~vferAl~~~ 1757 (1935)
+|+++..|..++..+...+++++|...|++|++. .. ...|..+..++.. .+ +.++|...|++|++..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~------~~a~~~lg~~~~~g~~~~~--~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-KE------NSGCFNLGVLYYQGQGVEK--NLKKAASFYAKACDLN 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC------HHHHHHHHHHHHHTSSSCC--CHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHcCCCcCC--CHHHHHHHHHHHHHCC
Confidence 5788999999999999999999999999999972 11 3467777788777 78 5599999999999886
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHHHHHHHHHHHHHhCCCCCh
Q 000173 1758 DPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKH 1828 (1935)
Q Consensus 1758 ~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e~A~~ll~ralk~~p~~~~ 1828 (1935)
....|..++.+|.. .+++++|.+.|++++.. .....|+.++.++.. . ++++|...|++++... +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----c
Confidence 56888999999999 99999999999999986 588999999999998 7 9999999999999864 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCchhHH
Q 000173 1829 IKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISLSLPPKKMK 1900 (1935)
Q Consensus 1829 ~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~~~~~pk~~k 1900 (1935)
...+..+|.++.. .+++++|...|+++++. .+...|..++.++.. .+++++|...|++++. ..+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~--~~~~--- 218 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE--LENG--- 218 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH--TTCH---
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh--CCCH---
Confidence 5789999999998 89999999999999977 456788999999999 9999999999999998 4432
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000173 1901 FLFKKYLEYEKS----VGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1901 ~l~~~yl~~E~~----~G~~e~a~~v~~rAle~ 1929 (1935)
..+..+..+... .++.+.|...|++|++.
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 345555556666 78899999999998865
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.4e-11 Score=139.49 Aligned_cols=200 Identities=13% Similarity=0.000 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1724 kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
...+|..++......| ..+.|...|+++++..|. ...|..++.+|...+++++|.+.|++++...+....+|..++.
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQ--DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3568999999999999 559999999999999886 4899999999999999999999999999999999999999999
Q ss_pred HHHHc--CHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1803 RLLKQ--QQEGVQAVVQRALLSLPR-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1803 ~l~~~--~~e~A~~ll~ralk~~p~-~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
++... ++++|...|+++++ .|. .....+|..+|.++...|++++|...|++++...|.+..+|..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99887 89999999999999 332 233689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPP-KKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1880 e~ar~lferal~~~~~p-k~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
++|..+|++++. ..| ... ..|.....++...|+.+.+...++.+.+.
T Consensus 164 ~~A~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQS--RVEVLQA-DDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHH--HHCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999998 555 555 45667777888899999999998887653
No 54
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.5e-12 Score=166.67 Aligned_cols=255 Identities=13% Similarity=0.036 Sum_probs=190.6
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFML---SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l---~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e 1744 (1935)
..+|...|++++..+|+++..|..++..+. ..++.++|.+.|++|++..|... .-..++...+..+....+ ..+
T Consensus 154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~-~~~~~l~~~~~~~~~~~~--~~~ 230 (472)
T 4g1t_A 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ-YLKVLLALKLHKMREEGE--EEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH-HHHHHHHHHHHHCC--------C
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch-HHHHHHHHHHHHHHhhhh--HHH
Confidence 457889999999999999999999887754 45778899999999997655322 111122233344444455 347
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------------
Q 000173 1745 AVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------------- 1807 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~---------------- 1807 (1935)
.|.+.|++|+...|.. .+|..++.+|...+++++|.+.|+++++..|++..+|..++..+...
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999999999998875 99999999999999999999999999999999999999998876532
Q ss_pred ----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHH-HHcCCH
Q 000173 1808 ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD---LWSIYLDQE-IRLGDV 1879 (1935)
Q Consensus 1808 ----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d---lw~~ya~~e-~k~g~~ 1879 (1935)
.++.|...|++++...|... .+|..+|.++...|++++|...|++++...|...+ ++..|+.+. ...|+.
T Consensus 311 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADEANDNLF--RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTC--CCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHHHhhcCCchh--hhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 36788999999999998874 78999999999999999999999999999888654 466677654 467999
Q ss_pred HHHHHHHHHHHhcCCCch------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPPK------------------------KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1880 e~ar~lferal~~~~~pk------------------------~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
++|...|++++. +.|+ .+ ..|..........|+.+.|...|++|++.-
T Consensus 389 ~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~-~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 389 DKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRLSKNGADS-EALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHHHHCC-CT-THHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999997 4332 22 245556666777899999999999999853
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=2.5e-12 Score=151.11 Aligned_cols=215 Identities=13% Similarity=0.015 Sum_probs=182.8
Q ss_pred cHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1671 TPDEFERLVRS----SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1671 a~~~ferll~~----~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+...|++++.. +|++...|..++..+...|++++|...|++|++..|.. ..+|..++.++...| ..+.|
T Consensus 24 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~~--~~~~A 96 (275)
T 1xnf_A 24 ILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQAG--NFDAA 96 (275)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHcc--CHHHH
Confidence 45566777765 35678999999999999999999999999999875532 358999999999999 55999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|++|++..|.. ..|..++.+|...|++++|.+.|+++++..|.....+..+. ..... ++++|...|++++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC
Confidence 99999999998864 99999999999999999999999999999998886555544 34555 99999999999999998
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
... ..| ..+.+++..++.++|...|++++...|.. ..+|..++.++...|+++.|...|++++. ..|..
T Consensus 176 ~~~--~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 248 (275)
T 1xnf_A 176 KEQ--WGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 248 (275)
T ss_dssp CCS--THH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred cch--HHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh
Confidence 874 333 47777788889999999999998776643 67899999999999999999999999998 56644
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=2.4e-12 Score=153.83 Aligned_cols=244 Identities=16% Similarity=0.114 Sum_probs=187.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR---EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC- 1757 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~---ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~- 1757 (1935)
+|+....|..++..+...|++++|..+|+++++..... .......+|..+..++...| ..+.|...|++|++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKDAANLLNDALAIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999743211 12334578888889999999 5599999999999873
Q ss_pred -----CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1758 -----DP---KKVHLALLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1758 -----~~---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~--------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
+. ...|..++.+|...+++++|.+.|++++..+ +....+|..++.++... ++++|.++|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 2889999999999999999999999999875 45577899999999999 9999999999999
Q ss_pred HhC------CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHH------HHHcCCH
Q 000173 1821 LSL------PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK---------RTDLWSIYLDQ------EIRLGDV 1879 (1935)
Q Consensus 1821 k~~------p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---------~~dlw~~ya~~------e~k~g~~ 1879 (1935)
... .......+|..+|.+++..|++++|..+|++++...|. ...+|.....+ ....+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 872 11223578999999999999999999999999976433 22244443333 3345666
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1880 DLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1880 e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
..+...|++++. ..|..+ ..|..+.......|+.+.|...|++|++.-
T Consensus 261 ~~a~~~~~~~~~--~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 261 GEYGGWYKACKV--DSPTVT-TTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCCC-----------CHHHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCC--CCchHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 677788888887 667766 678888888899999999999999999864
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.2e-11 Score=145.23 Aligned_cols=222 Identities=12% Similarity=0.003 Sum_probs=188.9
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCh
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQN 1776 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~ 1776 (1935)
..+++++|...|+++++..+. .......+|..++..+...| ..+.|...|++|++..|. ...|..++.+|...+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRAL-TDDERAQLLYERGVLYDSLG--LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccc-cCchhHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 446899999999999975321 22334678999999999999 559999999999999987 49999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
++|.+.|++++...|....+|+.++..+... ++++|...|+++++..|... .+..+..+.+..|++++|...|+++
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP---FRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999999998874 2233334446779999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1856 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1856 l~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~----~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
+...|.+...|. .+.++...++.+.|...|++++. ..|.. . ..|..+.......|+.+.|...|++|++.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADAT--DNTSLAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC--SHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc--cccccccccc-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999877776 67777788889999999999987 44432 3 57888888888999999999999999853
No 58
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.41 E-value=3.5e-15 Score=162.28 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=89.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEE--CCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCC
Q 000173 760 HPNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f--~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~ 837 (1935)
++|+++.|.|++|++||+||++ ++|+.||+|+|++++.++.++++.|++||.|.|+|+++|++++|+.||+|+...
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~-- 91 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP-- 91 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCH--
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc--
Confidence 6899999999999999999999 689999999999999999999999999999999999999999999999998653
Q ss_pred CCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeec-ceeEEEeccCCceeEEEeeee
Q 000173 838 TDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVSFEEHSDVYGFITHHQ 908 (1935)
Q Consensus 838 ~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~-~g~~v~~~~~~~v~g~i~~~~ 908 (1935)
+|| ......++.|+.++|+|..+.+ +| +.+++ ++.|++|.+.
T Consensus 92 ----------------------~p~---~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~--giegl~h~s~ 134 (182)
T 1kl9_A 92 ----------------------EEA---IKCEDKFTKSKTVYSILRHVAEVLE--YTKDE--QLESLFQRTA 134 (182)
T ss_dssp ----------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHTT--CCSHH--HHHHHHHHTH
T ss_pred ----------------------ChH---HHHHHhccCCCEEEEEEEEchhhcC--CcccC--ChhheEEeee
Confidence 111 1224568889999999999998 99 45553 5777776653
No 59
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-11 Score=156.49 Aligned_cols=262 Identities=13% Similarity=0.086 Sum_probs=176.2
Q ss_pred cCCCCcHHHHHHHHHc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHH
Q 000173 1666 KDAPRTPDEFERLVRS---------SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFN 1733 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~---------~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ekl~lW~ayl~ 1733 (1935)
++..+|...|++++.. +|.....|.+++..+..+|++++|...|+++++..+. ....+...++.....
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 4566777788887753 6888999999999999999999999999999964221 111122234443333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH---HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYE---RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-- 1807 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~---~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-- 1807 (1935)
....++....++|...|++|++..|.. ..|..++.++. ..++.++|.+.|+++++..|....+|..++..+...
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 333333212478999999999888764 66666665533 345666677777777777777777766666544432
Q ss_pred ---CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----------------
Q 000173 1808 ---QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS----------------- 1867 (1935)
Q Consensus 1808 ---~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~----------------- 1867 (1935)
++++|.++|++++...|.. ..+|..+|.++...|++++|...|+++++..|++..+|.
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 5566777777777776655 466777777777777777777777777777776655544
Q ss_pred ------------------------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-H
Q 000173 1868 ------------------------------------IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY-E 1910 (1935)
Q Consensus 1868 ------------------------------------~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~-E 1910 (1935)
.++.++...|++++|...|++++....++.....++..|..+ +
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 344455567888889999999888555544443456666655 3
Q ss_pred HHcCCHHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle~ 1929 (1935)
...|+.+.|...|++|++.
T Consensus 383 ~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHHhc
Confidence 4568888888888888865
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=5.7e-12 Score=157.91 Aligned_cols=245 Identities=9% Similarity=-0.066 Sum_probs=200.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-----
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC----- 1757 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~----- 1757 (1935)
|.....|...+..+...|++++|+..|++|++..+. +......+|..+..++...| ..+.|...|++|++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLG--DYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHccC
Confidence 344566778888899999999999999999986443 22223467888888889999 5599999999999873
Q ss_pred -CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHc-C-----------------HHH
Q 000173 1758 -DP-KKVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVWLRRVQRLLKQ-Q-----------------QEG 1811 (1935)
Q Consensus 1758 -~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~------~~~~~vw~~~~~~l~~~-~-----------------~e~ 1811 (1935)
+. ..+|..++.+|...|++++|.+.|++++..+ +....+|..++..+... + +++
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 22 2889999999999999999999999999874 34566899999999998 8 999
Q ss_pred HHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHH
Q 000173 1812 VQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~----~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d------lw~~ya~~e~k~g~~e~ 1881 (1935)
|...|++++...+.. ....+|..+|.+++..|++++|...|++++...|...+ +|..++.++...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 999999998864321 22468999999999999999999999999998775433 78999999999999999
Q ss_pred HHHHHHHHHhcCCCch-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1882 IRGLFERAISLSLPPK-----KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1882 ar~lferal~~~~~pk-----~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
|..+|++++. ..+. ..-..|..+.......|+.+.|...+++|++....
T Consensus 282 A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 282 AAEHYKRTLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999997 3222 11146777777888899999999999999987553
No 61
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.39 E-value=5.3e-13 Score=134.26 Aligned_cols=93 Identities=25% Similarity=0.403 Sum_probs=77.1
Q ss_pred EEEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEE
Q 000173 1444 EVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVK 1523 (1935)
Q Consensus 1444 ~lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~ 1523 (1935)
.-|+|+...+||... ..++++|++|.|+|+++.+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~----~~~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 11 SSGLVPRGSHMFNNW----VALNKKGAIVTGKVTAVDAKGATVELAD-GVEGYLRASEASRDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp ----------CHHHH----TTTCCSSSEEEEEEEEECSSCEEEECST-TCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEE
T ss_pred ccchhhcccCHHHHH----hhcCCCCCEEEEEEEEEECCeEEEEECC-CCEEEEEHHHcCcccccChhhccCCCCEEEEE
Confidence 357888888887543 5789999999999999999999999976 79999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEecccc
Q 000173 1524 ILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1524 Il~id~~~~ri~lslK~~ 1541 (1935)
|+++|+++++|.||+|+.
T Consensus 86 V~~vd~~~~ki~LS~k~~ 103 (109)
T 2khj_A 86 FTGVDRKNRAISLSVRAK 103 (109)
T ss_dssp EEEEETTTTEEEEETTSS
T ss_pred EEEEECCCCEEEEEEeec
Confidence 999999889999999984
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=2.1e-11 Score=139.73 Aligned_cols=211 Identities=10% Similarity=0.026 Sum_probs=168.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK- 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~- 1760 (1935)
.|.++..|...+..++..+++++|...|+++++..|... ..+|..+...+...| ..++|...|++|++..|..
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD----SVTAYNCGVCADNIK--KYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC----HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTTCSHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC----cHHHHHHHHHHHHhh--cHHHHHHHHHHHHHhCcchH
Confidence 456779999999999999999999999999998765222 246777788888899 4599999999999999986
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~-------~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
.+|..++.+|...+++++|.+.|+++++.+|.+. .+|..++..+... ++++|.+.|+++++..|...+..+|
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 156 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDAL 156 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHH
Confidence 9999999999999999999999999999999988 6699999999999 9999999999999998871126899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
..+|.+++.. ++.+++++....+.....+. .......+.+++|...|++++. +.|... ..+..+..
T Consensus 157 ~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~--l~p~~~-~~~~~l~~ 222 (228)
T 4i17_A 157 YSLGVLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT--LSPNRT-EIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HCTTCH-HHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh--cCCCCH-HHHHHHHH
Confidence 9999988754 55666777777666644332 2233445668889999999888 666665 34444433
No 63
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.37 E-value=6.1e-11 Score=142.08 Aligned_cols=204 Identities=9% Similarity=0.048 Sum_probs=174.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK 1760 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i-~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~ 1760 (1935)
+|.+...+..++.++...++.++|.+.+++++..- .+.. ..+|+.+..+....| ..+.|.+.|++ .+..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~----~~~~~~la~~~~~~g--~~~~Al~~l~~----~~~~ 130 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN----TTFLLMAASIYFYDQ--NPDAALRTLHQ----GDSL 130 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----HHHHHHHHHHHHHTT--CHHHHHHHHTT----CCSH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----HHHHHHHHHHHHHCC--CHHHHHHHHhC----CCCH
Confidence 45566777888888999999999999999998642 2222 357888889999999 55999999998 3446
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR--RVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAI 1837 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~--~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~ 1837 (1935)
..|..++.+|.+.|++++|...|+++++..|+.....+. |..++... ++++|..+|++++...|.+ +.+|...|.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~--~~~~~~la~ 208 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT--LLLLNGQAA 208 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc--HHHHHHHHH
Confidence 899999999999999999999999999998887644443 33545555 8999999999999999876 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~-ar~lferal~~~~~pk~~ 1899 (1935)
++.+.|++++|...|++++..+|.+.++|..++.++...|+.+. +..+|++++. ..|..+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 99999999999999999999999999999999999999999865 7899999998 777776
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=2.1e-11 Score=151.77 Aligned_cols=245 Identities=10% Similarity=-0.043 Sum_probs=201.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---- 1758 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~---- 1758 (1935)
+.....|...+..+...|++++|...|+++++..|. .......+|..+...+...| ..+.|...|++|+....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~ 82 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGD 82 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhccc
Confidence 457788999999999999999999999999986443 22223468888889999999 55999999999987742
Q ss_pred C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-C--------------------
Q 000173 1759 P---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q-------------------- 1808 (1935)
Q Consensus 1759 ~---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~-------------------- 1808 (1935)
. ..+|..++.+|...|++++|...|++++..++.. ..+|..++..+... +
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~ 162 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA 162 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH
Confidence 1 2789999999999999999999999999877532 55889999999988 8
Q ss_pred HHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCC
Q 000173 1809 QEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD------LWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d------lw~~ya~~e~k~g~ 1878 (1935)
+++|...|++++...+... ...+|..+|.+++..|++++|...|++++...|+..+ +|..++.++...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988643221 2468999999999999999999999999988765433 78999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1879 VDLIRGLFERAISLSLPPKK-----MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1879 ~e~ar~lferal~~~~~pk~-----~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
+++|..+|++++. ..+.. .-..|..+.......|+.+.|...+++|++....
T Consensus 243 ~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 243 FETASEYYKKTLL--LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 9999999999997 22221 1146777777888899999999999999987553
No 65
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.37 E-value=6.5e-13 Score=127.25 Aligned_cols=77 Identities=25% Similarity=0.389 Sum_probs=71.6
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecC-ceeEEeecc-ccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVS-ELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~-~v~Gl~h~s-els~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
+...++|+++.|+|+ +++||+||+|.+. +++||+|+| ++++.++.++++.| +||.|+++|+++|++++||+||+|+
T Consensus 6 y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 6 YSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp SCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 566799999999999 9999999999742 799999999 99999998899999 9999999999999999999999997
Q ss_pred c
Q 000173 1541 S 1541 (1935)
Q Consensus 1541 ~ 1541 (1935)
.
T Consensus 84 ~ 84 (88)
T 1luz_A 84 M 84 (88)
T ss_dssp E
T ss_pred c
Confidence 4
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.36 E-value=8.7e-12 Score=160.25 Aligned_cols=211 Identities=9% Similarity=-0.084 Sum_probs=183.6
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHH
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE-EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKL 1778 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~-e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~ 1778 (1935)
.+++|...++++....+ ....+|..+...+...+ .. ++|.+.|++|++..|.. ..|..++.+|...|++++
T Consensus 83 ~~~~al~~l~~~~~~~~-----~~a~~~~~lg~~~~~~g--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 155 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-----VEAQALMLKGKALNVTP--DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHTSSS--SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccCc-----hhHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 35666666666664333 23568999888888888 66 99999999999999874 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc------
Q 000173 1779 ADELLYKMIKKFKHSCKVWLRRVQRLLKQ----------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN------ 1842 (1935)
Q Consensus 1779 A~el~~~~~k~~~~~~~vw~~~~~~l~~~----------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~------ 1842 (1935)
|.+.|++++...|+ ..+|..++..+... ++++|...|++|++..|.+ ..+|..+|.+++..
T Consensus 156 A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 156 AHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD--GRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999988 79999999988762 6899999999999999987 58999999999998
Q ss_pred --CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHH
Q 000173 1843 --GVADRGRSMFEGILSEYP---KRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1843 --g~~e~Ar~ife~al~~~P---k~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e 1917 (1935)
|++++|...|+++++..| .+..+|..++.++...|++++|...|++++. +.|... ..|..+.......|+.+
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~-~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWP-EPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999 777776 57777777777788877
Q ss_pred HHHHHHH
Q 000173 1918 RIEYVKQ 1924 (1935)
Q Consensus 1918 ~a~~v~~ 1924 (1935)
++...+.
T Consensus 310 eAi~~~~ 316 (474)
T 4abn_A 310 SLLESKG 316 (474)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 7766543
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1.5e-11 Score=164.44 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000173 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQ 1802 (1935)
Q Consensus 1724 kl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~ 1802 (1935)
....|..+.+++...| ..++|.+.|++|++..|.. ..|..++.+|.+.|++++|.+.|+++++..|+...+|++++.
T Consensus 8 ~a~al~nLG~~~~~~G--~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3567888888899999 4599999999999998875 899999999999999999999999999999999999999999
Q ss_pred HHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 000173 1803 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1803 ~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ 1881 (1935)
.+... ++++|.+.|++|++..|.+ ..+|..+|.++...|++++|...|+++++..|++.++|..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999 9999999999999998877 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 000173 1882 IRGLFERAIS 1891 (1935)
Q Consensus 1882 ar~lferal~ 1891 (1935)
|...|+++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.7e-11 Score=147.45 Aligned_cols=243 Identities=9% Similarity=-0.050 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1759 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1759 (1935)
...|...+..+...|++++|...|+++++..|. .......+|..+..++...| ..+.|...|++|++....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH--DYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhcccccHH
Confidence 456788888999999999999999999986443 22223467888888889999 459999999999977421
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-C--------------------HHH
Q 000173 1760 -KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-Q--------------------QEG 1811 (1935)
Q Consensus 1760 -~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~--------------------~e~ 1811 (1935)
..+|..++.+|...|++++|.+.|++++...+.. ..+|..++..+... + +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 2789999999999999999999999999876433 44888999999888 8 999
Q ss_pred HHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 000173 1812 VQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~----~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw~~ya~~e~k~g~~e~ 1881 (1935)
|...|++++...+.. ....++..+|.+++..|++++|...|++++...|.. ..+|..++.++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998764321 124688999999999999999999999999876543 2378999999999999999
Q ss_pred HHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1882 IRGLFERAISL----SLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1882 ar~lferal~~----~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
|..+|++++.. ..++... ..|..+.......|+.+.|...+++|++....
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEA-QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999972 1111113 46677777888899999999999999887553
No 69
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.35 E-value=7.2e-14 Score=151.39 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=88.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccc
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRT 1454 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~ 1454 (1935)
++|+++.|+|++|+++|+||+|. ++++|+||+++|+|.++.++.+.|++||.|.++|+++|+++++|.||+|....+|
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~ 93 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSED 93 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcCh
Confidence 48999999999999999999994 7899999999999999999999999999999999999999999999999998887
Q ss_pred cccccccccCCCCCCcEEEeEEEEEe-eceE
Q 000173 1455 ASQSEINNLSNLHVGDIVIGQIKRVE-SYGL 1484 (1935)
Q Consensus 1455 ~~~~~~~~~~~~~~G~~v~G~V~~v~-~~G~ 1484 (1935)
|... ...+++|+++.|+|++++ +||+
T Consensus 94 ~~~~----~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 94 IIKC----EEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH----HHhccCCCcceEEEEEchhhcCC
Confidence 7533 567899999999999998 7887
No 70
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.35 E-value=2.1e-10 Score=135.29 Aligned_cols=212 Identities=12% Similarity=-0.051 Sum_probs=188.3
Q ss_pred cCCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----
Q 000173 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---- 1737 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~---- 1737 (1935)
++..+|...|++++. |++...|..++..+.. .+++++|...|++|++.-. ...|..+..++..
T Consensus 20 ~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 20 KDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-------SNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp TCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHhCCCCc
Confidence 346678888999987 8889999999999999 9999999999999996521 4578888888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-C
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-Q 1808 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~ 1808 (1935)
.+ +.++|...|++|++.. ....|..++.+|.. .+++++|.+.|++++... ....|+.++..+.. . +
T Consensus 91 ~~--~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 91 SQ--NTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp CC--CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred cc--CHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence 88 5699999999999984 56899999999999 999999999999999864 78999999999998 7 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVD 1880 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e 1880 (1935)
+++|...|++++... ++..+..+|.++.. .+++++|...|+++++..| ...+..++.++.. .++++
T Consensus 166 ~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 166 LKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred HHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 999999999999873 36899999999999 9999999999999999876 7889999999999 99999
Q ss_pred HHHHHHHHHHhcCCCchhH
Q 000173 1881 LIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~ 1899 (1935)
+|...|++++. ..|..+
T Consensus 240 ~A~~~~~~a~~--~~~~~a 256 (273)
T 1ouv_A 240 QAIENFKKGCK--LGAKGA 256 (273)
T ss_dssp THHHHHHHHHH--HTCHHH
T ss_pred HHHHHHHHHHH--cCCHHH
Confidence 99999999999 666555
No 71
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.35 E-value=3.2e-12 Score=120.87 Aligned_cols=72 Identities=24% Similarity=0.461 Sum_probs=67.4
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
++++|+++.|+|+++.+||+||+|++ ++.||||+|++++.++ +.|++||.|+|+|+++|++++||.||+|+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~-~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~ 73 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE-QVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPL 73 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET-TEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSC
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC-CCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 57899999999999999999999987 7999999999998765 679999999999999999999999999985
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=3.2e-11 Score=161.37 Aligned_cols=167 Identities=12% Similarity=0.023 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|.+.|++++|.+.|+++++..|+...+|++++..+.+. ++++|.+.|++|++..|.. ..+|..+|.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999 9999999999999999987 69999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
...|++++|...|+++++.+|++.++|+.++.++...|++++|...|++|+. +.|... ..|..+.......|+.++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~-~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFP-DAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCH-HHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCh-HHHhhhhhHHHhcccHHHH
Confidence 9999999999999999999999999999999999999999999999999999 788887 6888888889999999999
Q ss_pred HHHHHHHHHHHHh
Q 000173 1920 EYVKQKAMEYVES 1932 (1935)
Q Consensus 1920 ~~v~~rAle~v~~ 1932 (1935)
.+.+++|++....
T Consensus 165 ~~~~~kal~l~~~ 177 (723)
T 4gyw_A 165 DERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChh
Confidence 9999999998764
No 73
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.33 E-value=1.7e-13 Score=148.37 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=83.0
Q ss_pred CCCEEEEEEEEEecCeEEEEE--CCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccCCC
Q 000173 761 PNSVVHGYVCNIIETGCFVRF--LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSST 838 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f--~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~~~ 838 (1935)
+|+++.|.|++|++||+||++ ++|+.||+|+|++++.++.++++.|++||.|.|+|+++|++++|+.||+++...
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~--- 91 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSS--- 91 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCH---
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCc---
Confidence 899999999999999999999 489999999999999999999999999999999999999999999999997753
Q ss_pred CchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEee-ccee
Q 000173 839 DASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN-DFGV 890 (1935)
Q Consensus 839 d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~-~~g~ 890 (1935)
+|| ......+++|+.++|+|..+. ++|+
T Consensus 92 ---------------------~~~---~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 ---------------------EDI---IKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp ---------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------ChH---HHHHHhccCCCcceEEEEEchhhcCC
Confidence 111 123466788999999998888 6776
No 74
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.32 E-value=1e-13 Score=162.54 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=100.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
+++|+++.|+|++|+++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 569999999999999999999998 699999999999999999999999999999999999999999999999998877
Q ss_pred ccccccccccCCCCCCcEEEeEEEEEee-ceEEEE
Q 000173 1454 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT 1487 (1935)
Q Consensus 1454 ~~~~~~~~~~~~~~~G~~v~G~V~~v~~-~G~FV~ 1487 (1935)
||... ...+++|+++.|+|+++.+ ||+|+.
T Consensus 91 p~~~~----~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIKC----EDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred hHHHH----HHHccCCCeeEEEEEEcccccCCccC
Confidence 76432 5688999999999999998 699975
No 75
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.32 E-value=6.5e-12 Score=127.39 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=77.0
Q ss_pred EEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCc-ccccCcccCccCCCEEEEEE
Q 000173 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNI 816 (1935)
Q Consensus 738 ~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~-~~~~~~~~~f~~Gq~V~~~V 816 (1935)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.|++++ .+..++.+.|++||.|+|+|
T Consensus 10 ~~~~k~~~~~p~~~~~---~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 10 HSSGLVPRGSHWVAIA---KRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp -----------CCCSS---CSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEE
T ss_pred ccchhhcccCCHHHHh---hcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEE
Confidence 4477888889988754 4588999999999999999999999999999999999997 47788899999999999999
Q ss_pred EEeeCCCCeEEEeeccccc
Q 000173 817 LDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 817 ~~vd~e~~rl~LSlk~~~~ 835 (1935)
+++|++++|+.||+++...
T Consensus 87 ~~vd~~~~rI~lslk~~~~ 105 (115)
T 2khi_A 87 LDIDEERRRISLGLKQCKA 105 (115)
T ss_dssp EEEETTTTEEEECCCCCCS
T ss_pred EEEECCCCEEEEEEEecCc
Confidence 9999999999999998754
No 76
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.32 E-value=2.7e-12 Score=129.07 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=78.5
Q ss_pred EEeccchhcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEE
Q 000173 738 LLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNIL 817 (1935)
Q Consensus 738 ~ls~K~~l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~ 817 (1935)
.-|+|+...++|..+. .++++|+++.|.|++++++|+||++.+++.||+|.+++++.++.++.+.|++||.|.|+|+
T Consensus 11 ~~~iKq~~~~p~~~~~---~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~ 87 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWV---ALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFT 87 (109)
T ss_dssp ----------CHHHHT---TTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEE
T ss_pred ccchhhcccCHHHHHh---hcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEE
Confidence 4578899999998754 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCeEEEeecccc
Q 000173 818 DVNSETGRITLSLKQSC 834 (1935)
Q Consensus 818 ~vd~e~~rl~LSlk~~~ 834 (1935)
++|++++++.||+++..
T Consensus 88 ~vd~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 88 GVDRKNRAISLSVRAKD 104 (109)
T ss_dssp EEETTTTEEEEETTSSS
T ss_pred EEECCCCEEEEEEeecC
Confidence 99999999999999764
No 77
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.32 E-value=4.5e-12 Score=131.22 Aligned_cols=77 Identities=32% Similarity=0.702 Sum_probs=73.5
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++++|++|.|+|++|++||+||.|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~-~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~ 79 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDE-ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRAT 79 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEET-TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECC-CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 478999999999999999999999986 79999999999999999999999999999999999999899999999985
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=1.3e-10 Score=144.58 Aligned_cols=248 Identities=10% Similarity=-0.027 Sum_probs=196.6
Q ss_pred HcCCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1680 RSSPNSSFVWIK------YMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1680 ~~~P~s~~lW~~------y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
...|.+...|+. .+.++...|++++|...|++|++.... .+..+...+|..+..++...| ..+.|...|++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--~~~~A~~~~~~ 168 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYARQ 168 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 344544454554 677788999999999999999975332 123345678888889999999 55999999999
Q ss_pred HHhcCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHH
Q 000173 1753 ALQYCDP--------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1753 Al~~~~~--------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
|++..+. -..|..++.+|...|++++|.+.|++++..++.. ..+|.+++..+... ++++|...|+
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9987432 1688999999999999999999999999876433 35899999999999 9999999999
Q ss_pred HHHHhCC---C-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHH
Q 000173 1818 RALLSLP---R-HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD---VDLIRGL 1885 (1935)
Q Consensus 1818 ralk~~p---~-~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-----~~dlw~~ya~~e~k~g~---~e~ar~l 1885 (1935)
+|+...+ . .....++..+|.+++..|++++|...|++++...+. ....+..++.++...|+ .++|..+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999421 1 233689999999999999999999999999987532 23335667778888898 7788888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~ 1933 (1935)
|+++ ...+... .++.....+....|+.+.|...+++|++.-++.
T Consensus 329 ~~~~---~~~~~~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 329 LESK---MLYADLE-DFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHT---TCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHC---cCHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 8875 2444444 577778888899999999999999999876653
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=7.2e-11 Score=135.31 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD--PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~--~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
..|..........|+ .++|...|++|++..| ....|..++.+|...+++++|.+.|+++++..|....+|+.++..
T Consensus 8 ~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKN--YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC--HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 478888888899994 5999999999999996 458888899999999999999999999999999999999999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHI-----KFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~-----~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k 1875 (1935)
+... ++++|...|+++++..|.+... .+|...|.+++..|++++|...|+++++..|. +.+.|..++.++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999 9999999999999999987433 67999999999999999999999999999999 88999999999876
Q ss_pred cCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1876 LGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1876 ~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
. ++.+++++.. +.+.... .+.. ..+...+.++.|...+++|++.
T Consensus 166 ~-----~~~~~~~a~~--~~~~~~~-~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 166 N-----GADVLRKATP--LASSNKE-KYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H-----HHHHHHHHGG--GTTTCHH-HHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHh--cccCCHH-HHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 5 4556777776 3322221 2221 2234456688899999999875
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.4e-10 Score=126.59 Aligned_cols=163 Identities=13% Similarity=0.017 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR 1803 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~ 1803 (1935)
...|..++......| ..+.|...|+++++..|. ...|..++.+|...+++++|.+.|+++++..+....+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAG--RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHT--CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 456777777778888 458899999999888765 48888888899999999999999999998888888999999988
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+... ++++|.+.|++++...|.. ..+|..+|..++..|++++|..+|++++...|.+..+|..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 8888 9999999999999888766 578888899999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
...|++++.
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
No 81
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.29 E-value=4.1e-12 Score=129.91 Aligned_cols=110 Identities=29% Similarity=0.411 Sum_probs=99.3
Q ss_pred EeechhhhhcCCCcccccCCcEEEEEEEeeecceEEEEecCCcceecccCCCCCC-----CCCCcCCCCcEEEEEEEEEc
Q 000173 214 LSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAE-----NSGIDVKPGLLLQGVVRSID 288 (1935)
Q Consensus 214 LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG~ild~Gi~~~~gFl~~~~~~~-----~~~~~l~~G~~~~~~v~~~~ 288 (1935)
+||+|+.+|+.++.+++.+|+++.|.|++|+|+|+.|++|..+..||++.++... ..+..+++||.+.|.|.+++
T Consensus 3 ~sl~P~~vn~~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 82 (119)
T 1wi5_A 3 SGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVK 82 (119)
T ss_dssp CCCCCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECC
T ss_pred cccCHHHhhccccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEe
Confidence 6899999999999999999999999999999999999999777889998876420 11237999999999999999
Q ss_pred CCCcEEEEccCccccccccccccccccccccCCCc
Q 000173 289 RTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGM 323 (1935)
Q Consensus 289 ~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~ 323 (1935)
..++.+.||+.+..+.++.+++.+.+|+++|+||.
T Consensus 83 ~~~~~i~Lslk~~~l~~~~~~~~~~~~~~~l~p~~ 117 (119)
T 1wi5_A 83 GNGGVVSLSVGHSEVSTAIATEQQSWNLNNLSGPS 117 (119)
T ss_dssp TTSCEEEEECCCCCSCCCCCCSSCCCCCCCCCCCC
T ss_pred CCCCEEEEEEchhhcccceeeccCccChhhccCCC
Confidence 88899999999999999999998899999999995
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.3e-10 Score=126.98 Aligned_cols=166 Identities=15% Similarity=0.037 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|.+.|+++++..+....+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
+..|++++|...|++++...|.+..+|..++.++...|++++|..+|++++. ..|... ..|..+.......|+.+.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG--LRPNEG-KVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998 556666 5788888888899999999
Q ss_pred HHHHHHHHHHHH
Q 000173 1920 EYVKQKAMEYVE 1931 (1935)
Q Consensus 1920 ~~v~~rAle~v~ 1931 (1935)
...++++++.-.
T Consensus 164 ~~~~~~~~~~~~ 175 (186)
T 3as5_A 164 LPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC
Confidence 999999988654
No 83
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.28 E-value=1e-11 Score=126.01 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=81.1
Q ss_pred cchhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCccccCCCCcEEEEEEEEEeCCCCEEEEE
Q 000173 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1935)
Q Consensus 1368 ~~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lS 1446 (1935)
++.....++++|+++.|+|++++++|+||+|+++++|+||++++++. ++.++.+.|++||.|+++|+++|.++++|.||
T Consensus 20 p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~ls 99 (115)
T 2khi_A 20 HWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLG 99 (115)
T ss_dssp -CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEEC
T ss_pred CHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEE
Confidence 34444567999999999999999999999999999999999999984 78889999999999999999999999999999
Q ss_pred EecCccccccc
Q 000173 1447 LKTSDSRTASQ 1457 (1935)
Q Consensus 1447 lk~~~~~~~~~ 1457 (1935)
+++...+||..
T Consensus 100 lk~~~~~p~~~ 110 (115)
T 2khi_A 100 LKQCKANPWQQ 110 (115)
T ss_dssp CCCCCSSCCCC
T ss_pred EEecCcCHHHH
Confidence 99998888743
No 84
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.2e-12 Score=127.34 Aligned_cols=80 Identities=30% Similarity=0.404 Sum_probs=72.9
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCC--CeeEEeccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEK--RRISLGMKS 1540 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~--~ri~lslK~ 1540 (1935)
...+++|++|.|+|++|.+||+||+|.+.+++||||+|++++.++.++.+.|++||.|+|+|+++|+++ ++|.||+|.
T Consensus 17 ~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 17 ENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred hcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 567899999999999999999999995434799999999999999999999999999999999999864 799999998
Q ss_pred cc
Q 000173 1541 SY 1542 (1935)
Q Consensus 1541 ~~ 1542 (1935)
..
T Consensus 97 ~~ 98 (119)
T 2cqo_A 97 VN 98 (119)
T ss_dssp BC
T ss_pred cc
Confidence 64
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.24 E-value=1.6e-10 Score=135.57 Aligned_cols=178 Identities=9% Similarity=0.017 Sum_probs=122.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP- 1759 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~- 1759 (1935)
.+|++...|...+..++..|++++|...|+++++..|... .....|..+...+...|+ .+.|...|+++++..|.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE--WAADAQFYLARAYYQNKE--YLLAASEYERFIQIYQID 85 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST--THHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc--chHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHCCCC
Confidence 4688999999999999999999999999999998766432 113577778888888894 59999999999998763
Q ss_pred ---HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHHc-CHH
Q 000173 1760 ---KKVHLALLGLYER--------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLLKQ-QQE 1810 (1935)
Q Consensus 1760 ---~~v~~~l~~i~~~--------~~~~~~A~el~~~~~k~~~~~~~vw-----------------~~~~~~l~~~-~~e 1810 (1935)
...|+.++.+|.. .+++++|...|+++++.+|++...| +.++.++... +++
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 2788889999988 8999999999999999998877666 3334444444 444
Q ss_pred HHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCC
Q 000173 1811 GVQAVVQRALLSLPRHK-HIKFISQTAILEFKN----------GVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~----------g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
+|...|+++++..|... ...+|..+|..++.. |++++|...|+++++.+|++
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 44444444444444332 123444444444433 44444444444444444444
No 86
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.6e-11 Score=121.78 Aligned_cols=78 Identities=33% Similarity=0.583 Sum_probs=70.9
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecC--ceeEEeecccc-CcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENT--NLVGLCHVSEL-SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~--~v~Gl~h~sel-s~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
...++++|+++.|+|++|.+||+||+|.+. +++||||+|++ ++.++.++.+.|++||.|+|+|+++|+ +||.||+
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSl 83 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSM 83 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEES
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEE
Confidence 356789999999999999999999999742 79999999999 777888899999999999999999996 6999999
Q ss_pred ccc
Q 000173 1539 KSS 1541 (1935)
Q Consensus 1539 K~~ 1541 (1935)
|..
T Consensus 84 k~~ 86 (103)
T 2eqs_A 84 KDV 86 (103)
T ss_dssp TTB
T ss_pred eec
Confidence 984
No 87
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.23 E-value=9.5e-12 Score=119.20 Aligned_cols=78 Identities=18% Similarity=0.318 Sum_probs=71.8
Q ss_pred cccccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCC-ccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeec
Q 000173 755 DASHIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRS-KAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1935)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s-~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk 831 (1935)
.|...++|+.+.|+|+ |++||+||++. +++.||+|+| ++++++..++++.| +||.|+|+|+++|++++|+.||+|
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk 82 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYK 82 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEe
Confidence 3556688999999999 99999999997 4899999999 99999988999999 999999999999999999999999
Q ss_pred ccc
Q 000173 832 QSC 834 (1935)
Q Consensus 832 ~~~ 834 (1935)
...
T Consensus 83 ~~~ 85 (88)
T 1luz_A 83 RMC 85 (88)
T ss_dssp EEC
T ss_pred ecC
Confidence 764
No 88
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.21 E-value=2.6e-11 Score=125.46 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=77.3
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|+|++|+++|+||+|+.+++|+||+++++|.|+.++.+.|++||.|.|+|+++|+++++|.||++....+
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~~ 82 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAA 82 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHHS
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 35889999999999999999999998899999999999999999999999999999999999999899999999998766
Q ss_pred cc
Q 000173 1454 TA 1455 (1935)
Q Consensus 1454 ~~ 1455 (1935)
|+
T Consensus 83 p~ 84 (130)
T 2k4k_A 83 PE 84 (130)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.2e-10 Score=134.31 Aligned_cols=223 Identities=11% Similarity=0.015 Sum_probs=159.6
Q ss_pred CCCCcHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHH
Q 000173 1667 DAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFNLE 1735 (1935)
Q Consensus 1667 ~~~~a~~~ferll~--------~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ekl~lW~ayl~le 1735 (1935)
+.++|...|++++. .+|.....|..++..+...+++++|...|++|++.... ........+|..+..++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 35555556665554 34677899999999999999999999999999975310 01123356788888888
Q ss_pred HHcCCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRALQYC--------DP-KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSCKVWL 1798 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl~~~--------~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~--------~~~~~~vw~ 1798 (1935)
...| ..+.|...|++|++.. +. ...|..++.+|...|++++|.+.|+++++. .+....+|.
T Consensus 96 ~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 96 GKRG--KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHhc--cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 8888 4599999999999873 22 288888999999999999999999999887 444567788
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCC-------CChHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPR-------HKHIKFISQTAILEFKNGV------ADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~-------~~~~~~~~~~a~le~~~g~------~e~Ar~ife~al~~~Pk~~d 1864 (1935)
.++..+... ++++|..+|+++++..+. .....+|...+.++...+. +..+...++.+....|....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888888888 889999999888876221 1112567777766665443 33444444444334455566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+|..++.++...|++++|..+|++++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888888888886
No 90
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.20 E-value=5.6e-11 Score=112.33 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=67.8
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
++++|+.+.|.|++++++|+||++.+++.||+|.|++++.++ +.|++||.|+|+|+++|++++|+.||+++...
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 367899999999999999999999999999999999998765 67999999999999999999999999997643
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=1.6e-10 Score=155.31 Aligned_cols=185 Identities=6% Similarity=-0.091 Sum_probs=163.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERAL--------QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl--------~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfer 1752 (1935)
.+|++...+...+ +..+++++|.+.|++|+ +..|.. ..+|..+...+...| ..++|...|++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~g--~~~~A~~~~~~ 458 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSES-----VELPLMEVRALLDLG--DVAKATRKLDD 458 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTC-----SHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccc-----hhHHHHHHHHHHhcC--CHHHHHHHHHH
Confidence 4677776666544 78899999999999999 443422 358999999999999 45999999999
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
|++..|.. ..|+.++.+|...+++++|.+.|+++++..|++...|++++..+... ++++ .+.|++|++..|.+ ..
T Consensus 459 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--~~ 535 (681)
T 2pzi_A 459 LAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV--IS 535 (681)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--HH
T ss_pred HhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--HH
Confidence 99998875 99999999999999999999999999999999999999999999999 9999 99999999999987 58
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~ 1878 (1935)
+|..+|.++.+.|++++|...|+++++.+|.+..+|..++..++..+.
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999877665
No 92
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.18 E-value=1.7e-12 Score=150.40 Aligned_cols=108 Identities=16% Similarity=0.264 Sum_probs=98.4
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeC--CCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~--~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++|+++.|+|+++.++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 458999999999999999999998 689999999999999999999999999999999999999999999999998877
Q ss_pred ccccccccccCCCCCCcEEEeEEEEEe-eceEEEE
Q 000173 1454 TASQSEINNLSNLHVGDIVIGQIKRVE-SYGLFIT 1487 (1935)
Q Consensus 1454 ~~~~~~~~~~~~~~~G~~v~G~V~~v~-~~G~FV~ 1487 (1935)
+|... ...++.|+.+.|.|+++. +||++++
T Consensus 89 ~~~~~----~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 89 QRKAK----LQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhHHH----HHhccCCCeEEEEEEEchhhcCCCHH
Confidence 76432 567899999999999999 8998543
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.18 E-value=2.1e-10 Score=154.03 Aligned_cols=167 Identities=8% Similarity=-0.070 Sum_probs=152.0
Q ss_pred HHcCCCCHHHHHHHHHHHH--------hcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1736 NEYGNPPEEAVVKVFQRAL--------QYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1736 ~~~g~~~~e~a~~vferAl--------~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
...+ ..++|.+.|++|+ +..|.. ..|+.++.+|.+.|++++|.+.|+++++..|++..+|+.++..+..
T Consensus 402 ~~~~--~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLS--QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTC--CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cccc--CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 5567 5599999999999 777765 9999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1807 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1807 ~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
. ++++|...|++|++..|.+. .+|..+|.++++.|++++ ...|+++++.+|.+..+|+.++.++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999999884 899999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E 1910 (1935)
|++|+. +.|... ..|.......
T Consensus 557 ~~~al~--l~P~~~-~a~~~~~~~~ 578 (681)
T 2pzi_A 557 LDEVPP--TSRHFT-TARLTSAVTL 578 (681)
T ss_dssp HHTSCT--TSTTHH-HHHHHHHHHT
T ss_pred HHhhcc--cCcccH-HHHHHHHHHH
Confidence 999998 788776 3554444443
No 94
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=5.2e-11 Score=142.25 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=170.9
Q ss_pred ccCCCCcHHHHHHHHH--------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFN 1733 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~--------~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~---~ee~Ekl~lW~ayl~ 1733 (1935)
.++..+|...|++++. .+|.....|..++..+...+++++|...|++++..... ........+|..+..
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3456778888888887 46778899999999999999999999999999975311 011233567888888
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcC------C-C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------cCCCHHH
Q 000173 1734 LENEYGNPPEEAVVKVFQRALQYC------D-P--KKVHLALLGLYERTEQNKLADELLYKMIKK--------FKHSCKV 1796 (1935)
Q Consensus 1734 le~~~g~~~~e~a~~vferAl~~~------~-~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~--------~~~~~~v 1796 (1935)
++...| ..+.|...|+++++.. + . ..+|..++.+|...+++++|.+.|++++.. .+....+
T Consensus 120 ~~~~~g--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 120 LYGKRG--KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHTTT--CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHcC--cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888999 5599999999999874 2 1 288999999999999999999999999987 4455778
Q ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHhCCC---------CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1797 WLRRVQRLLKQ-QQEGVQAVVQRALLSLPR---------HK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1797 w~~~~~~l~~~-~~e~A~~ll~ralk~~p~---------~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
|..++.++... ++++|...|++++...+. .. +...+...+..+...+.+.+|...|+.++...|..
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 99999999999 999999999999986432 11 12333333344445667777888999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1863 TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1863 ~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+|..++.++.+.|++++|..+|++++.
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999997
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=2.3e-09 Score=133.11 Aligned_cols=239 Identities=11% Similarity=0.021 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINI-REENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------ 1759 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~-~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------ 1759 (1935)
..|...+.++...|++++|...|++|++.... .++.+...+|..+..++...| ..+.|...|++|++..+.
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHhCCCchh
Confidence 35666777888999999999999999975432 223445678888888889999 559999999999986431
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH-----hCCC
Q 000173 1760 --KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL-----SLPR 1825 (1935)
Q Consensus 1760 --~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk-----~~p~ 1825 (1935)
-..|..++.+|...+++++|.+.|++++...+ ....++.+++..+... ++++|...|++|+. ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 16788999999999999999999999998653 1346788999999999 99999999999999 4443
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCch
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK-----RTDLWSIYLDQEIRLGD---VDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk-----~~dlw~~ya~~e~k~g~---~e~ar~lferal~~~~~pk 1897 (1935)
. ..++..+|.++++.|++++|...|++++...+. ....+..+..++...++ ..+|..+|++. ...+.
T Consensus 260 ~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~ 334 (378)
T 3q15_A 260 L--PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAY 334 (378)
T ss_dssp H--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhH
Confidence 3 689999999999999999999999999998654 23345556666667777 77788888771 24444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 000173 1898 KMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVEST 1933 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~ 1933 (1935)
.. .++.....+....|+.+.|...|++|++.-++.
T Consensus 335 ~~-~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 335 IE-ACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp HH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44 577788888889999999999999999887654
No 96
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.9e-11 Score=122.93 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=79.3
Q ss_pred chhhhccCCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCC--CEEEE
Q 000173 1369 HLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEV 1445 (1935)
Q Consensus 1369 ~~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~--~ri~l 1445 (1935)
+......+++|+++.|+|++|+++|+||+|+. +.+|+||+++++|.++.++.+.|++||.|.++|+++|+++ ++|.|
T Consensus 13 ~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~L 92 (119)
T 2cqo_A 13 PETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSL 92 (119)
T ss_dssp CCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEE
T ss_pred hhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEE
Confidence 33344678999999999999999999999964 4799999999999999999999999999999999999864 69999
Q ss_pred EEecCcccccccc
Q 000173 1446 TLKTSDSRTASQS 1458 (1935)
Q Consensus 1446 Slk~~~~~~~~~~ 1458 (1935)
|+|....++|.+.
T Consensus 93 Slk~~~~~~~~~~ 105 (119)
T 2cqo_A 93 SMKVVNQGTGKDL 105 (119)
T ss_dssp ESTTBCSSSCCBS
T ss_pred EEeecccCCcccc
Confidence 9999888877543
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=5.5e-11 Score=127.44 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|...|++|+...|.. ..|+.++.+|.+.+++++|.+.|+++++..|.++.+|..++.++... ++++|...|++++
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 355666666665555443 45566666666666666666666666666666666666666666666 6666666666666
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRG-RSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~A-r~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+..|.+ +.+|..+|.++++.|+.++| +..++++++.+|++..+|.....++...|
T Consensus 93 ~~~p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 93 ELNPTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 666655 45666666666666665443 33346666666666666666666555554
No 98
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=6.6e-09 Score=128.43 Aligned_cols=266 Identities=10% Similarity=0.005 Sum_probs=200.2
Q ss_pred hccCCCCcHHHHHHHHHcCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchh-hHHHHHHHHHHHHHH
Q 000173 1664 LEKDAPRTPDEFERLVRSSPNSS-F----VWIKYMAFMLSMADVEKARSIAERALQTINIREEN-EKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1664 ~~~~~~~a~~~ferll~~~P~s~-~----lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~-Ekl~lW~ayl~le~~ 1737 (1935)
..++.+++...|++++...|.+. . .+..++..+...|++++|+..+++|+...+...+. .....+..+..++..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 35667888999999998777542 2 45666777889999999999999999754422111 112334566677788
Q ss_pred cCCCCHHHHHHHHHHHHhcCC-------C--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-----CHHHHHHHHHH
Q 000173 1738 YGNPPEEAVVKVFQRALQYCD-------P--KKVHLALLGLYERTEQNKLADELLYKMIKKFKH-----SCKVWLRRVQR 1803 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~-------~--~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-----~~~vw~~~~~~ 1803 (1935)
.| ..+.|...|+++++..+ + ...|..++.+|...|++++|...|++++...+. ....|..++..
T Consensus 106 ~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 106 QG--FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 89 55999999999998652 2 267778899999999999999999999988753 34678889998
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFIS-----QTAILEFKNGVADRGRSMFEGILSEYPKR----TDLWSIYLDQE 1873 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~-----~~a~le~~~g~~e~Ar~ife~al~~~Pk~----~dlw~~ya~~e 1873 (1935)
+... ++++|...|++++...+.......|. ..+.++...|++++|+..|++++...|.. ...|..++.++
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 9888 99999999999998754432112232 23445779999999999999999876643 33678889999
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CC-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFERAISLS--LP-PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~--~~-pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
...|++++|..+|++++... .. +...-..+..........|+.+.|...+++|++...
T Consensus 264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998621 11 111112455555667788999999999999998765
No 99
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.16 E-value=4e-12 Score=149.13 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=94.4
Q ss_pred cCCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecccccC
Q 000173 759 IHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCS 836 (1935)
Q Consensus 759 ~~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~~ 836 (1935)
.++|+++.|+|++|++||+||++. +++.||+|.|+++|.++.++.+.|++||.|.|+|+++|++++|+.||+|+...
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~- 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP- 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH-
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc-
Confidence 358999999999999999999998 79999999999999999999999999999999999999999999999998643
Q ss_pred CCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEeec-ceeEE
Q 000173 837 STDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVV 892 (1935)
Q Consensus 837 ~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~~-~g~~v 892 (1935)
+|| ..+...+++|+.++|+|..+.+ +|+++
T Consensus 90 -----------------------~p~---~~~~~~~~~G~~v~G~V~~v~~~~G~fi 120 (308)
T 1q8k_A 90 -----------------------EEA---IKCEDKFTKSKTVYSILRHVAEVLEYTK 120 (308)
T ss_dssp -----------------------HHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred -----------------------ChH---HHHHHHccCCCeeEEEEEEcccccCCcc
Confidence 111 2235678899999999999998 59864
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=4.7e-10 Score=131.54 Aligned_cols=227 Identities=14% Similarity=0.115 Sum_probs=175.0
Q ss_pred HcCCHHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC------CC---HHHHHH
Q 000173 1698 SMADVEKARSIAERALQTINIR---EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------DP---KKVHLA 1765 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~---ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~------~~---~~v~~~ 1765 (1935)
..+++++|...|++|++..... .......+|..+..++...| ..+.|...|++|++.. +. ..+|..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--KYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 4578889999999999743210 12334678889999999999 4599999999999873 22 288999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC-----C-CCChHH
Q 000173 1766 LLGLYERTEQNKLADELLYKMIKKF--------KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL-----P-RHKHIK 1830 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k~~--------~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~-----p-~~~~~~ 1830 (1935)
++.+|...+++++|.+.|++++..+ +....+|..++..+... ++++|..+|++++... + ......
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999874 45678899999999999 9999999999999981 1 112357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCC
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSE---------YPKRTDLWSIYLDQEIRLGDVD------LIRGLFERAISLSLP 1895 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~---------~Pk~~dlw~~ya~~e~k~g~~e------~ar~lferal~~~~~ 1895 (1935)
++..+|.+++..|++++|...|++++.. .+....+|......+...+... .+...++.+.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CC
Confidence 8999999999999999999999999987 4455567888777776544433 33333333222 34
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1896 PKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1896 pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
|... ..|..+..+....|+.+.|...+++|++.
T Consensus 249 ~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 PTVN-TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555 57778888889999999999999999863
No 101
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=9.5e-11 Score=116.27 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=74.9
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCC---CcEEEEECccC-CCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSR---KLDAKVLLSNL-SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~---~v~g~V~~s~l-sd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.++++|+++.|+|++|.++|+||+|+. +++|+||++++ +|.++.++.+.|++||.|.++|+++|+ ++|.||+|.
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 468899999999999999999999996 89999999999 677888999999999999999999996 699999999
Q ss_pred Cccccccc
Q 000173 1450 SDSRTASQ 1457 (1935)
Q Consensus 1450 ~~~~~~~~ 1457 (1935)
...+||.+
T Consensus 86 ~~~~~~~~ 93 (103)
T 2eqs_A 86 VDQETGED 93 (103)
T ss_dssp BCTTTCCB
T ss_pred cccCCchh
Confidence 88877643
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=1.1e-10 Score=125.01 Aligned_cols=145 Identities=12% Similarity=-0.010 Sum_probs=128.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000173 1766 LLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1766 l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1844 (1935)
|+.++...+++++|.+.|++++...|..+..|+.++..+++. ++++|.+.|+++++..|.+ +.+|..+|.+++..|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCc
Confidence 566777788999999999999988888899999999999999 9999999999999999987 6999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~-ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
+++|...|+++++.+|++.++|..++.++.+.|+.+. ++..+++|+. +.|++. .+|.....+....|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~-~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSP-AVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCH-HHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999875 5556799999 888887 678877777777775
No 103
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=6.7e-10 Score=133.00 Aligned_cols=170 Identities=12% Similarity=0.072 Sum_probs=96.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIR-EENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHL 1764 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~-ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v~~ 1764 (1935)
+..+...|++++|...|++|+...+.. +.......|..+..++...| ..++|...|++|++..+. -..|.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--NSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444556666677777666666532111 01112345666666666666 336666666666665432 14566
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChH-----HH
Q 000173 1765 ALLGLYERT-EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHI-----KF 1831 (1935)
Q Consensus 1765 ~l~~i~~~~-~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~-----~~ 1831 (1935)
.++.+|... +++++|.+.|++++..++.. ..+|..++.++... ++++|...|++++...|..... .+
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 666666664 66666666666666665422 34566666666666 6666666666666666554321 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1832 ISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1832 ~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
|...+.++...|++++|+..|++++..+|...+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 566666666666666666666666666665443
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=1.1e-09 Score=131.13 Aligned_cols=203 Identities=10% Similarity=0.012 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CC---HHHHHHHHHHHHHc
Q 000173 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC----DP---KKVHLALLGLYERT 1773 (1935)
Q Consensus 1701 e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~----~~---~~v~~~l~~i~~~~ 1773 (1935)
++++|...|++|. +++...|++ +.|...|++|++.. +. -..|..++.+|...
T Consensus 32 ~~~~A~~~~~~a~-------------------~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQAA-------------------TIYRLRKEL--NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG 90 (292)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHTTCT--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHH-------------------HHHHHcCCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC
Confidence 4899999999885 234567865 99999999999874 22 27899999999999
Q ss_pred CChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHH-c-CHHHHHHHHHHHHHhCCCCCh----HHHHHHHHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLK-Q-QQEGVQAVVQRALLSLPRHKH----IKFISQTAILEFK 1841 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~-~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~a~le~~ 1841 (1935)
|++++|.+.|++++..++.. ...|.+++..+.. . ++++|...|++|+...|...+ ..+|..+|.++..
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999987532 5689999999998 5 999999999999998875422 3678999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHH----HHHHHHHHHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTD-------LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMK----FLFKKYLEYE 1910 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~d-------lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k----~l~~~yl~~E 1910 (1935)
.|++++|...|++++...|.... .|..++..+...|+++.|+..|++++. +.|.... .++...+...
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~ 248 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAV 248 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHH
Confidence 99999999999999999887543 578888899999999999999999998 5443221 1333333333
Q ss_pred H--HcCCHHHHHHHHHHH
Q 000173 1911 K--SVGEEERIEYVKQKA 1926 (1935)
Q Consensus 1911 ~--~~G~~e~a~~v~~rA 1926 (1935)
. ..+.++.+...|+++
T Consensus 249 ~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 249 NEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HTTCTTTHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHhccC
Confidence 2 345688888777665
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=6.3e-09 Score=124.49 Aligned_cols=228 Identities=9% Similarity=0.021 Sum_probs=196.8
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH----HHc---
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA--DVEKARSIAERALQTINIREENEKLNIWVAYFNLE----NEY--- 1738 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~--e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le----~~~--- 1738 (1935)
.+++...++++|..+|++..+|..-.......+ .++++...+++++...|-. ..+|.....+. ...
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-----y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-----YQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-----CHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-----HHHHHHHHHHHHHHHHhcccc
Confidence 677889999999999999999999999999999 9999999999999765533 35898766665 455
Q ss_pred CCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C------
Q 000173 1739 GNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1808 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~--~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~------ 1808 (1935)
+ ..+.+.+.++++++.+|.+ .+|....-++.+.+.++ ++.+.+.+++...+.+..+|...+..+... .
T Consensus 124 ~--~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 F--DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp C--CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 5 3488899999999999864 99999999999999988 999999999999999999999988777665 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV-ADRGRSMFEGILSEY---PKRTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~-~e~Ar~ife~al~~~---Pk~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
++++.+.+.+++...|.+. .+|.....++.+.|. .+.....+++++... |.+..+|.-+++.+.+.|+.++|..
T Consensus 202 ~~eEl~~~~~aI~~~p~n~--SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNP--STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc--cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8999999999999999884 899999999988887 445667777777665 8899999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHH
Q 000173 1885 LFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1885 lferal~~~~~pk~~k~l~~~y 1906 (1935)
+|+++.. +..|-+. .+|.--
T Consensus 280 ~~~~l~~-~~Dpir~-~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKS-KYNPIRS-NFWDYQ 299 (306)
T ss_dssp HHHHHHH-TTCGGGH-HHHHHH
T ss_pred HHHHHHh-ccChHHH-HHHHHH
Confidence 9999986 5778777 577643
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=6.4e-10 Score=126.05 Aligned_cols=179 Identities=9% Similarity=0.022 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHH
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHL 1764 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~ 1764 (1935)
+...|+..+..+++.|++++|...|+++++..|.. ...|.. ...... .+. ...++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~-----~~~~~~-~~~-------------~~~~~~ 58 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-----TEMYYW-----TNVDKN-SEI-------------SSKLAT 58 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-----HHHHHH-----HHSCTT-SHH-------------HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----hHHHHH-----hhhcch-hhh-------------hHHHHH
Confidence 56778888889999999999999999999765521 223433 011110 010 013445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG 1843 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g 1843 (1935)
.++.+|.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+++..|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHh
Confidence 5667777777777777777777777777777777777777777 7777777777777777665 467777777666554
Q ss_pred C--HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1844 V--ADRGRSMFEGILSEYPKRT-DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1844 ~--~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+ .+.+...|.+++. |... ..|...+..+...|++++|+..|++++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3445555555542 2222 2455555555666777777777777776
No 107
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=3.3e-09 Score=124.30 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP----KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL 1798 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~----~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~ 1798 (1935)
..|..........|+ .+.|...|+++++..|. ...|+.++.+|.+.+++++|.+.|+++++.+|.+ ..+|+
T Consensus 16 ~~~~~~a~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 16 QEAFERAMEFYNQGK--YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 467777777788894 59999999999999875 4899999999999999999999999999998744 67899
Q ss_pred HHHHHHHH--------c-CHHHHHHHHHHHHHhCCCCChH-HHH--------------HHHHHHHHHcCCHHHHHHHHHH
Q 000173 1799 RRVQRLLK--------Q-QQEGVQAVVQRALLSLPRHKHI-KFI--------------SQTAILEFKNGVADRGRSMFEG 1854 (1935)
Q Consensus 1799 ~~~~~l~~--------~-~~e~A~~ll~ralk~~p~~~~~-~~~--------------~~~a~le~~~g~~e~Ar~ife~ 1854 (1935)
.++..++. . ++++|...|++++...|.+... .++ ...|.+++..|++++|...|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 8 9999999999999999987532 222 7889999999999999999999
Q ss_pred HHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCchh
Q 000173 1855 ILSEYPK---RTDLWSIYLDQEIRL----------GDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1855 al~~~Pk---~~dlw~~ya~~e~k~----------g~~e~ar~lferal~~~~~pk~ 1898 (1935)
++..+|+ ..++|..++..+... |++++|...|++++. ..|..
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 9999998 456888888888876 888999999999998 44443
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=1.6e-08 Score=125.06 Aligned_cols=243 Identities=12% Similarity=0.016 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH------
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK------ 1760 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~------ 1760 (1935)
.++...+..+...|++++|+..+++++...+.........++..+..++...| ..+.|...|++|+...+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--ELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34455666778899999999999999987764332233445666677778889 5599999999999865321
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC---
Q 000173 1761 -KVHLALLGLYERTEQNKLADELLYKMIKKFK--------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK--- 1827 (1935)
Q Consensus 1761 -~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~--------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~--- 1827 (1935)
..+..++.+|...|++++|.+.|++++...+ .....+..++..+... ++++|...|++++...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 4467788899999999999999999998762 2345677788888888 99999999999999887642
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHhcCCCc-hhH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWSI-----YLDQEIRLGDVDLIRGLFERAISLSLPP-KKM 1899 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~~-----ya~~e~k~g~~e~ar~lferal~~~~~p-k~~ 1899 (1935)
....+..+|.++...|++++|+..|++++...+. ....|.. .+.++...|+++.|+.++++++.....+ ...
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2467889999999999999999999999987433 2123432 3345678999999999999998732111 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
...|..+.......|+.+.+...++++++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 12456666778889999999999999987654
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.11 E-value=1.4e-09 Score=129.97 Aligned_cols=180 Identities=12% Similarity=0.042 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.+.....+.+.+ |.. ..++.++..+.+.|++++|.+.|++++...|++..+|+.++..++.. ++++|...|++++
T Consensus 102 ~~~l~~~l~~~l---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 102 EEAIRALLDXVL---PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHS---CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHc---CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 344444444443 443 77888888888999999999999999999999999999999988888 9999999999998
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK-- 1898 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~-- 1898 (1935)
...|.. ...+...+..+...++.+.|...|++++..+|.+.++|+.++.++...|+++.|...|++++. ..|..
T Consensus 179 ~~~p~~--~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~--~~p~~~~ 254 (287)
T 3qou_A 179 LQDQDT--RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR--XDLTAAD 254 (287)
T ss_dssp GGGCSH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTGGG
T ss_pred hhhcch--HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh--ccccccc
Confidence 888743 344444455566777888888999999999999999999999999999999999999999998 44433
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1899 MKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1899 ~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
. ..|..++.+....|+.+.+...|+|++..+
T Consensus 255 ~-~a~~~l~~~~~~~g~~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 255 G-QTRXTFQEILAALGTGDALASXYRRQLYAL 285 (287)
T ss_dssp G-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Confidence 4 578888888888898888888888887653
No 110
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.09 E-value=2.9e-08 Score=127.85 Aligned_cols=239 Identities=7% Similarity=-0.104 Sum_probs=189.0
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----c
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----Y 1738 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~ 1738 (1935)
+..++...|++++.. ++...|..++.++.. .+++++|...|++|++.-+ ...+..+..++.. .
T Consensus 166 d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~y~~g~g~~ 236 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD-------ELGQLHLADMYYFGIGVT 236 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCC
Confidence 456677788888764 578889999888888 7899999999999986432 2345555555544 4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C
Q 000173 1739 GNPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ------Q 1808 (1935)
Q Consensus 1739 g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~------~ 1808 (1935)
+ +.++|...|++|++.. ....+..++.+|.. .+++++|.+.|+++... ..+..++.++.++... +
T Consensus 237 ~--~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 237 Q--DYTQSRVLFSQSAEQG-NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp C--CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCC
T ss_pred C--CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCC
Confidence 5 5688999999998864 34678888888888 88999999999998865 5788888999888763 8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDL 1881 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ 1881 (1935)
+++|...|+++++.. +...+..+|.+++..| ++++|..+|++++.. .+.+.|+.++.++.. .+++++
T Consensus 312 ~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 312 REQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 999999999998763 3578999999988867 789999999999876 568899999999998 899999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 000173 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYEKS----VGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1882 ar~lferal~~~~~pk~~k~l~~~yl~~E~~----~G~~e~a~~v~~rAle~v 1930 (1935)
|...|++++... . . ..|..+..+... .+|.+.|...|++|++.=
T Consensus 386 A~~~~~~A~~~~--~--~-~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQG--L--S-AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTT--C--H-HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--C--H-HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 999999999832 2 2 345555555555 789999999999998764
No 111
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.09 E-value=1e-10 Score=119.54 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=76.0
Q ss_pred EEEecCcccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeecccc-CcccccCcccccCCCCEEEEE
Q 000173 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL-SEDHVDNIETIYRAGEKVKVK 1523 (1935)
Q Consensus 1445 lSlk~~~~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sel-s~~~~~~~~~~~~~Gd~V~~~ 1523 (1935)
+||+++..+. ...+.++++|+++.|+|++|++||+||+|...++.|++|.++. .+.+..++.+.|++||.|+|+
T Consensus 3 ~sl~P~~vn~-----~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 3 SGSSGKNVNR-----VLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CCCCCSCSSC-----CCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred cccCHHHhhc-----cccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 4667766652 2346799999999999999999999999973356666665554 233445678899999999999
Q ss_pred EEEEecCCCeeEEeccccccCC
Q 000173 1524 ILKVDKEKRRISLGMKSSYFKN 1545 (1935)
Q Consensus 1524 Il~id~~~~ri~lslK~~~~~~ 1545 (1935)
|+++|.+++||.||+|+.++..
T Consensus 78 V~~vd~~~~~i~Lslk~~~l~~ 99 (119)
T 1wi5_A 78 VEKVKGNGGVVSLSVGHSEVST 99 (119)
T ss_dssp EEECCTTSCEEEEECCCCCSCC
T ss_pred EEEEeCCCCEEEEEEchhhccc
Confidence 9999999999999999876644
No 112
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.07 E-value=1e-09 Score=136.49 Aligned_cols=224 Identities=9% Similarity=-0.003 Sum_probs=182.1
Q ss_pred ccCCCCcHHHHHHHHHc---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVRS---SPN---SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1736 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~---~P~---s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee--~Ekl~lW~ayl~le~ 1736 (1935)
.++..+|...|++++.. .|+ .+..|..++.++...+++++|...+++|++..+...+ ......|..+..++.
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 45688899999999865 233 5688999999999999999999999999986553322 223456777778888
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHh-----c-CCCHHHHHHHHHH
Q 000173 1737 EYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKK-----F-KHSCKVWLRRVQR 1803 (1935)
Q Consensus 1737 ~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~-----~-~~~~~vw~~~~~~ 1803 (1935)
..| ..++|...|++|++..+.. .+|..++.+|...|++++|.+.|++++.. . +....+|..++..
T Consensus 196 ~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 196 DLK--QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 999 4599999999999875321 68999999999999999999999999983 4 5668889999999
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCC---hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHK---HIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~---~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~ 1876 (1935)
+... ++++|...|++|+...+... ....+..++.++...|+ .++|..+|++. ...|...+++..++.++...
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 352 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER 352 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC
Confidence 9999 99999999999998754321 12335668888889998 78888888876 33344456888999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 000173 1877 GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1877 g~~e~ar~lferal~ 1891 (1935)
|++++|...|++++.
T Consensus 353 g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 353 KNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999987
No 113
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.06 E-value=5.6e-08 Score=125.25 Aligned_cols=236 Identities=6% Similarity=-0.125 Sum_probs=139.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH----cC
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLS----MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE----YG 1739 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~----~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~----~g 1739 (1935)
..++...|+++.. +++...|..++..+.. .+++++|...|++|...-. ...|..+..++.. .+
T Consensus 95 ~~~A~~~~~~a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-------~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 95 YAQAVIWYKKAAL--KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR-------DSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCC
Confidence 4445555655543 2455666666666665 5566666666666664311 2344555554444 33
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHH
Q 000173 1740 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYER----TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQE 1810 (1935)
Q Consensus 1740 ~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~----~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e 1810 (1935)
+.++|.+.|++|++.. ....|..++.+|.. .+++++|.+.|+++... ..+..++.++.++.. . +++
T Consensus 166 --d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 166 --DYVMAREWYSKAAEQG-NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp --CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred --CHHHHHHHHHHHHHCC-CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 3466666666666652 34566666666666 66667777777666653 456666666666665 3 667
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CCHHH
Q 000173 1811 GVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----GDVDL 1881 (1935)
Q Consensus 1811 ~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-----g~~e~ 1881 (1935)
+|...|++++... +...+..+|.++.. .+++++|..+|++++.. .+.+.+..++.++... ++.++
T Consensus 241 ~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG----NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT----CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7777777666531 24566666666666 66777777777776643 4456666666666665 67777
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 000173 1882 IRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAME 1928 (1935)
Q Consensus 1882 ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G---~~e~a~~v~~rAle 1928 (1935)
|...|++++. ..+. ..|.....+....| +.+.|...|++|++
T Consensus 315 A~~~~~~a~~--~~~~---~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 315 AISWYTKSAE--QGDA---TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHHHHHHH--TTCH---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 7777777776 2222 22333333333335 55666666666654
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=6.1e-09 Score=119.36 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHH---HHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK----KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK---VWLR 1799 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~---vw~~ 1799 (1935)
.|...+......|+ .+.|...|+++++..|.. ..|+.++.+|.+.+++++|.+.|+++++.+|.+.. .|+.
T Consensus 6 ~~~~~a~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGN--WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 46666666777884 499999999999987752 78999999999999999999999999999987764 6777
Q ss_pred HHHHHHH------------------c-CHHHHHHHHHHHHHhCCCCChHH---------------HHHHHHHHHHHcCCH
Q 000173 1800 RVQRLLK------------------Q-QQEGVQAVVQRALLSLPRHKHIK---------------FISQTAILEFKNGVA 1845 (1935)
Q Consensus 1800 ~~~~l~~------------------~-~~e~A~~ll~ralk~~p~~~~~~---------------~~~~~a~le~~~g~~ 1845 (1935)
++..+.. . ++++|...|+++++..|.+.... .....|.++++.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 7777664 4 78999999999999999875321 114667888899999
Q ss_pred HHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1846 DRGRSMFEGILSEYPKRT---DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1846 e~Ar~ife~al~~~Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.|...|++++..+|++. ++|...+..+.+.|+.+.|+..|+++..
T Consensus 164 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 164 VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 999999999999999875 5799999999999999999999998887
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.05 E-value=5.3e-09 Score=107.17 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|..+|+++++..+.....|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHHHHHH
Confidence 35788888899999999999999999988888899999999988888 9999999999999988766 57888999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|++++|..+|++++...|.+..+|..++.++...|++++|...|++++.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999999999999989999999999999999999999999887
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=8.4e-10 Score=121.29 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.++.++..+.+.|++++|...|+++++..|++..+|+.++..+... ++++|...|++++...| . ..++...+.+.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~--~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D--NSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C--hHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666 66666666666666665 3 233333343322
Q ss_pred -HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHHcCCHH
Q 000173 1841 -KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPK--KMKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1841 -~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk--~~k~l~~~yl~~E~~~G~~e 1917 (1935)
..+....|...|++++..+|.+..+|..++..+...|++++|...|++++. ..|. .. ..|..+.......|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~-~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK--VNLGAQDG-EVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTTTTT-HHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCcccChH-HHHHHHHHHHHHhCCCC
Confidence 222223456666666666666666666666666666666666666666666 3332 12 34555556666666666
Q ss_pred HHHHHHHHHHHH
Q 000173 1918 RIEYVKQKAMEY 1929 (1935)
Q Consensus 1918 ~a~~v~~rAle~ 1929 (1935)
.+...|++|+..
T Consensus 162 ~A~~~y~~al~~ 173 (176)
T 2r5s_A 162 AIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666666666543
No 117
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.05 E-value=3.5e-10 Score=131.19 Aligned_cols=76 Identities=29% Similarity=0.596 Sum_probs=71.5
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.++|++|.|+|+++.+||+||+|++ .+++||||+|++++.++.++.+.|++||.|.|+|+++|+++++|+||+|..
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 3589999999999999999999973 379999999999999999999999999999999999999999999999984
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.4e-09 Score=119.63 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
.++.........| ..+.|...|+++++..|.. ..|..++.+|.+.|++++|...|++++...| ++..+..++...+
T Consensus 8 ~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQG--EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTT--CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 5788888888999 5599999999999998875 9999999999999999999999999999888 7777666654433
Q ss_pred H-c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 000173 1806 K-Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1806 ~-~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ 1881 (1935)
. . ....|...|++++...|.+ ..+|..+|.++...|++++|...|+++++..|.. ..+|..++.++...|+.+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDN--FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 2 2 4456799999999999987 6999999999999999999999999999999986 5599999999999999999
Q ss_pred HHHHHHHHHh
Q 000173 1882 IRGLFERAIS 1891 (1935)
Q Consensus 1882 ar~lferal~ 1891 (1935)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=6.4e-09 Score=119.19 Aligned_cols=174 Identities=8% Similarity=-0.055 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH----
Q 000173 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---- 1760 (1935)
Q Consensus 1685 s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~---- 1760 (1935)
+...|...+..+++.|++++|...|+++++..|.... ....|..++..+...|+ .+.|...|+++++..|..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~a~~~lg~~~~~~~~--~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY--SQQVQLDLIYAYYKNAD--LPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT--HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHCcCCCcHH
Confidence 3456777777778888888888888888876554321 12356666666777774 488888888888877753
Q ss_pred HHHHHHHHHHHH------------------cCChHHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHH
Q 000173 1761 KVHLALLGLYER------------------TEQNKLADELLYKMIKKFKHSCKVW-----------------LRRVQRLL 1805 (1935)
Q Consensus 1761 ~v~~~l~~i~~~------------------~~~~~~A~el~~~~~k~~~~~~~vw-----------------~~~~~~l~ 1805 (1935)
..|+.++.+|.. .+++++|...|+++++.+|++..+| +.++.+++
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666654 5688999999999999999887666 56778888
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.. ++++|...|+++++..|.... ..+|...|..+.+.|++++|+..|+++....|+.
T Consensus 159 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 88 999999999999999998742 3789999999999999999999999999999875
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=3.7e-09 Score=126.28 Aligned_cols=162 Identities=13% Similarity=0.096 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|+.........| +.+.|...|++|++..|.. ..|+.++.+|.+.|++++|...|++++...|+....++..+..+
T Consensus 118 ~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQES--NYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 46777777778889 5699999999999999975 99999999999999999999999999999886665555666556
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRLGDVDL 1881 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~g~~e~ 1881 (1935)
... +.+.|...|++++...|.+ ..++..+|.++...|++++|...|+++++.+|.. ..+|..++.++...|+.+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 666 8888999999999999987 6999999999999999999999999999999998 7899999999999999999
Q ss_pred HHHHHHHHHh
Q 000173 1882 IRGLFERAIS 1891 (1935)
Q Consensus 1882 ar~lferal~ 1891 (1935)
|...|+|++.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.04 E-value=3.8e-09 Score=119.63 Aligned_cols=163 Identities=11% Similarity=0.003 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLR----------------RVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~----------------~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
..++..+..+...|++++|...|++++...|.+..+|+. ++..+... ++++|...|+++++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 345566677788889999999999998888888888888 99999999 9999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCchhHHH
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD--VDLIRGLFERAISLSLPPKKMKF 1901 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~--~e~ar~lferal~~~~~pk~~k~ 1901 (1935)
|.+ +.+|..+|.+++..|++++|...|+++++.+|++.+.|..++.++...|+ .+.+...|.+++. .+|...
T Consensus 85 p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-- 158 (208)
T 3urz_A 85 PNN--VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY-- 158 (208)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH--
T ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH--
Confidence 987 69999999999999999999999999999999999999999999877654 4456777877765 444332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000173 1902 LFKKYLEYEKSVGEEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1902 l~~~yl~~E~~~G~~e~a~~v~~rAle~ 1929 (1935)
.|..........|+++.|...|++|++.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2222222233468899999999998764
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=2.1e-08 Score=119.99 Aligned_cols=228 Identities=11% Similarity=0.103 Sum_probs=186.5
Q ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 000173 1692 YMAFMLSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYG-NPPEEAVVKVFQRALQYCDPK-KVHLALLG 1768 (1935)
Q Consensus 1692 y~~~~l~~~e~-dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g-~~~~e~a~~vferAl~~~~~~-~v~~~l~~ 1768 (1935)
|....++.+++ ++|..+++++|...| .. ..+|.....+...++ . ..+++.+.++.+++.+|.. .+|.....
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~nP-~~----~taWn~R~~~L~~l~~~-~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINELA-SH----YTIWIYRFNILKNLPNR-NLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCT-TC----HHHHHHHHHHHHTCTTS-CHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCc-HH----HHHHHHHHHHHHHcccc-cHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 33334455554 689999999996554 22 569998887777777 3 3599999999999999986 99999988
Q ss_pred HH----HHc---CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHH--HHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1769 LY----ERT---EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--GVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1769 i~----~~~---~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e--~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
++ ... ++++++.+++.+++..+|.+..+|....-.+... .++ ++.+.+.+++..+|.+ ..+|...+.+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N--~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN--NSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC--HHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence 88 666 7899999999999999999999999999877777 766 9999999999999988 4899999999
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcC-CCchhHHHHHHHHHHHH
Q 000173 1839 EFKNGV------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV-DLIRGLFERAISLS-LPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1839 e~~~g~------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~-e~ar~lferal~~~-~~pk~~k~l~~~yl~~E 1910 (1935)
....+. ++++...+.+++..+|.+..+|+....++.+.|.. +.+...+++++... ..++.. ..|.-.++..
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS-FALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH-HHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHH
Confidence 888887 99999999999999999999999999888888874 44777888777632 113333 4555556666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle 1928 (1935)
.+.|+.++|..+|+++.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 678999999999999876
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=3.8e-09 Score=109.43 Aligned_cols=118 Identities=10% Similarity=-0.029 Sum_probs=105.7
Q ss_pred HHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1753 ALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1753 Al~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
+...+|.. ..|...++.|.+.|++++|.+.|+++++..|.+..+|..++..+... ++++|...|+++++..|.+ ..
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IK 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hH
Confidence 33344443 78888999999999999999999999999999999999999999999 9999999999999999887 68
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
+|..+|..++..|++++|...|+++++.+|++.+++..+..+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999999998877654
No 124
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=3.4e-09 Score=139.34 Aligned_cols=152 Identities=11% Similarity=0.039 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
.++|.+.|++|++..|.. ..|..++.+|.+.+++++|.+.|+++++..|.+..+|+.++..+... ++++|.+.|++++
T Consensus 5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 84 (568)
T 2vsy_A 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84 (568)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 488999999999998874 99999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCch
Q 000173 1821 LSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL---GDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1821 k~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~---g~~e~ar~lferal~~~~~pk 1897 (1935)
+..|.+ ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.++... |++++|...|++++. ..|.
T Consensus 85 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~--~~p~ 160 (568)
T 2vsy_A 85 DAAPEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA--QGVG 160 (568)
T ss_dssp HHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH--HTCC
T ss_pred hcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh--cCCc
Confidence 999887 689999999999999999999999999999999999999999999999 999999999999998 4444
Q ss_pred h
Q 000173 1898 K 1898 (1935)
Q Consensus 1898 ~ 1898 (1935)
.
T Consensus 161 ~ 161 (568)
T 2vsy_A 161 A 161 (568)
T ss_dssp C
T ss_pred c
Confidence 3
No 125
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.96 E-value=8e-09 Score=128.25 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=180.8
Q ss_pred ccCCCCcHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch--hhHHHHHHHHHHHHH
Q 000173 1665 EKDAPRTPDEFERLVRSS------PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE--NEKLNIWVAYFNLEN 1736 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~------P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee--~Ekl~lW~ayl~le~ 1736 (1935)
.++..+|...|++++... |.....|..++.++...+++++|...+++|+...+...+ ......|..+...+.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 456888999999998542 235678899999999999999999999999986553222 223567778888889
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHH
Q 000173 1737 EYGNPPEEAVVKVFQRALQYCD---P----KKVHLALLGLYERTEQNKLADELLYKMIK-----KFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1737 ~~g~~~~e~a~~vferAl~~~~---~----~~v~~~l~~i~~~~~~~~~A~el~~~~~k-----~~~~~~~vw~~~~~~l 1804 (1935)
..| ..+.|.+.|++|++..+ . ..+|..++.+|...|++++|.+.|++++. ..+....++..++..+
T Consensus 194 ~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 194 DFK--HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HhC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 999 45999999999998642 1 17889999999999999999999999998 5566688999999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCC---ChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRH---KHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~---~~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
... ++++|...|++++...+.. .....+..++.++...++ +.+|...|++. ...|....++..++.++...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 999 9999999999999987652 223455666666777788 77888888772 223344567889999999999
Q ss_pred CHHHHHHHHHHHHh
Q 000173 1878 DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1878 ~~e~ar~lferal~ 1891 (1935)
++++|...|++++.
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999987
No 126
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.95 E-value=4.6e-09 Score=107.46 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=96.0
Q ss_pred cCCCHHHHHHHHHHHHHc-CH------HHHHHHHHHHHHhCCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1790 FKHSCKVWLRRVQRLLKQ-QQ------EGVQAVVQRALLSLPRHKH------IKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1790 ~~~~~~vw~~~~~~l~~~-~~------e~A~~ll~ralk~~p~~~~------~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
.|.+++.|..|+..+... ++ ++.+++|+||+...|..++ +.+|..||.++ ..+|+++||.+|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 367899999999988877 77 8889999999999887543 68999999884 5699999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1857 SEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1857 ~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
..+.+..-+|..||+||+++|+..+||.++.+|+. +.|+.. .++...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG--~~~k~~-~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE--RGAVPL-EMLEIAL 135 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCBCH-HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCCCcH-HHHHHHH
Confidence 98888888999999999999999999999999999 666555 3444444
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=8.6e-09 Score=135.51 Aligned_cols=152 Identities=13% Similarity=0.158 Sum_probs=125.0
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSM 1851 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~i 1851 (1935)
.+++++|.+.|+++++..|.+..+|+.++..+... ++++|.+.|+++++..|.+ ..+|..+|.+++..|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999999999999999999999999999 9999999999999999877 68999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 000173 1852 FEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV---GEEERIEYVKQKAME 1928 (1935)
Q Consensus 1852 fe~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~---G~~e~a~~v~~rAle 1928 (1935)
|+++++.+|.+..+|..++..+...|++++|...|++++. ..|... ..|..+....... |+.+.|...+++|++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEP-YITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 677766 5778888888888 999999999999987
Q ss_pred H
Q 000173 1929 Y 1929 (1935)
Q Consensus 1929 ~ 1929 (1935)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 5
No 128
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.94 E-value=3.5e-07 Score=109.99 Aligned_cols=223 Identities=11% Similarity=0.018 Sum_probs=180.2
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e----------~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~ 1737 (1935)
.+++...++++|..+|++..+|..-.......+. ++++...++.++...|-+ ..+|.....+...
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKn-----y~aW~hR~wlL~~ 120 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 120 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHhc
Confidence 6678899999999999999999988777765554 688999999999765532 4699998888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCC-hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQ-NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1807 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~-~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-------- 1807 (1935)
++.+..+.+.+.+.++++..|.+ ..|....-+....+. ++++.+.+.+++...+.+..+|...+..+...
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 88422488999999999998864 999999999999998 59999999999999999999999888776653
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000173 1808 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-----------GVADRGRSMFEGILSEYPKRTDLWSIY 1869 (1935)
Q Consensus 1808 -------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~-----------g~~e~Ar~ife~al~~~Pk~~dlw~~y 1869 (1935)
.++++.+.+.+++...|.+. .+|.....++... +.++++...++.++...|++.=.+..+
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~--SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 26889999999999999984 7887655555543 357899999999999999983333333
Q ss_pred HHHHH---HcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1870 LDQEI---RLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1870 a~~e~---k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+.+.. ..+..++++..+.+++. +.|-+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~ 309 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRA 309 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH--hCcchh
Confidence 33322 35778899999999998 888766
No 129
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.92 E-value=6.3e-10 Score=128.95 Aligned_cols=78 Identities=28% Similarity=0.513 Sum_probs=72.9
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEec-CceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..+++|++|.|+|+++.+||+||.|.+ .++.||+|+|++++.++.++.+.|++||.|.|+|+++|+++++|.||+|..
T Consensus 7 ~~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~ 85 (266)
T 3cw2_C 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKV 85 (266)
T ss_dssp SSCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTS
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEec
Confidence 467899999999999999999999962 379999999999999999999999999999999999999999999999985
No 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=4.9e-08 Score=99.83 Aligned_cols=132 Identities=19% Similarity=0.196 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLL 1805 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~ 1805 (1935)
.|..++......| ..+.|...|+++++..+. ...|..++.++...+++++|...|++++...+....+|..++..+.
T Consensus 3 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--cHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5788888888889 559999999999998875 4889999999999999999999999999999999999999999999
Q ss_pred Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1806 KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1806 ~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.. ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|++++...|.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99 9999999999999998876 5899999999999999999999999999998863
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.90 E-value=5.1e-09 Score=128.05 Aligned_cols=144 Identities=13% Similarity=0.028 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHc-C
Q 000173 1746 VVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-Q 1808 (1935)
Q Consensus 1746 a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---------------~~vw~~~~~~l~~~-~ 1808 (1935)
|.+.|++++...+.. ..|..++.+|.+.+++++|...|++++...+.. ..+|++++.+++.. +
T Consensus 132 A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~ 211 (336)
T 1p5q_A 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA 211 (336)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455555544433 778888899999999999999999999988877 69999999999999 9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI-RGLFE 1887 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a-r~lfe 1887 (1935)
+++|...|++|+...|.+ ..+|..+|.+++..|++++|+..|+++++.+|.+..+|..++.++.+.|+.++| +.+|.
T Consensus 212 ~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELDSNN--EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 699999999999999999999999999999999999999999999999999988 66777
Q ss_pred HHHh
Q 000173 1888 RAIS 1891 (1935)
Q Consensus 1888 ral~ 1891 (1935)
+++.
T Consensus 290 ~~~~ 293 (336)
T 1p5q_A 290 NMFE 293 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 132
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.90 E-value=4.9e-11 Score=155.69 Aligned_cols=129 Identities=19% Similarity=0.376 Sum_probs=53.8
Q ss_pred CCCCCEE--EEEEEE--EeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIV--QGYVKN--VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v--~G~V~~--v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
-+.|+++ .|++.+ +.++|+||+++. +|.|+++..++...+...+. +.. +
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~~--------------------i~~-i---- 659 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARAT--------------------ING-I---- 659 (757)
T ss_dssp --------------CTTCCCCCSCC----------CCCBSSHHHHCC---------------------------------
T ss_pred HHeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHHH--------------------HHH-h----
Confidence 3456555 366666 478899999984 89999998876543322111 100 0
Q ss_pred ccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeecccc----CcccccCcccccCCCCEEEEEEEEE
Q 000173 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL----SEDHVDNIETIYRAGEKVKVKILKV 1527 (1935)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sel----s~~~~~~~~~~~~~Gd~V~~~Il~i 1527 (1935)
.+ ..++++|++|.|+|+++.+||+||+|.+ +++||+|+|++ ++.+++++.+.|++||.|+|+|+++
T Consensus 660 ~~---------p~~~~vG~i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~v 729 (757)
T 1e3p_A 660 AN---------PTSPEVGERILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEI 729 (757)
T ss_dssp ----------------------CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCC
T ss_pred cc---------hhhcccccEEEEEEEEccccEEEEEEcC-CcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEE
Confidence 01 1468999999999999999999999986 79999999999 9999999999999999999999999
Q ss_pred ecCCCeeEEeccccc
Q 000173 1528 DKEKRRISLGMKSSY 1542 (1935)
Q Consensus 1528 d~~~~ri~lslK~~~ 1542 (1935)
|+ ++||+||+|+..
T Consensus 730 d~-~grI~LS~k~~~ 743 (757)
T 1e3p_A 730 DS-RGKLSLIPVIEG 743 (757)
T ss_dssp CS-SCC---------
T ss_pred CC-CCCEEEEEecCC
Confidence 98 999999999853
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=3.6e-08 Score=105.75 Aligned_cols=129 Identities=13% Similarity=-0.001 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|...|++++...+....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999988 9999999999999998876 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~--e~k~g~~e~ar~lferal~ 1891 (1935)
+..|++++|...|++++..+|.+..+|..+... +...|++++|..+|+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888554444 7778888888888887664
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.89 E-value=3.4e-09 Score=113.63 Aligned_cols=107 Identities=8% Similarity=-0.045 Sum_probs=66.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1783 LYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1783 ~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
|++++...|++...|+.++..+++. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|+++++.+|+
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3344444455556666666666666 6666666666666666655 356666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1862 RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1862 ~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..+|+.++..+...|+++.|+..|++++.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666666666
No 135
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=3.4e-08 Score=119.01 Aligned_cols=218 Identities=9% Similarity=0.005 Sum_probs=155.5
Q ss_pred CCHHHHHHHHHHHHHhccc-----cchh-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHH
Q 000173 1700 ADVEKARSIAERALQTINI-----REEN-EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLAL 1766 (1935)
Q Consensus 1700 ~e~dkAr~v~erAl~~i~~-----~ee~-Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v~~~l 1766 (1935)
+++++|.+++++|.+..+. ..+. +-...+...++++...+ ..+.|...|++|++..+. -..|..+
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAK--QLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555556555543331 0111 11234444456667788 459999999999987532 2788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCC----hHHHHHHHH
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHK----HIKFISQTA 1836 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~----~~~~~~~~a 1836 (1935)
+.+|...+++++|.+.|++++..+.. ....|.+++..+...++++|...|++|+...+... ...++..+|
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999988742 24677788877744499999999999999876532 147899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chhHHHHHHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIYLDQEIRLGDVDLIRGLFERAISLSLP---PKKMKFLFKKYL 1907 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~---pk~~k~l~~~yl 1907 (1935)
.++...|++++|...|++++..+|.. ...|...+..+...|++++|+..|++++ .... .... .+....+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~-~~l~~l~ 240 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC-AALEDLL 240 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH-HHHHHHH
Confidence 99999999999999999999986653 2367777888888999999999999999 4321 1122 2333333
Q ss_pred HHHHHcCCHHHHHHH
Q 000173 1908 EYEKSVGEEERIEYV 1922 (1935)
Q Consensus 1908 ~~E~~~G~~e~a~~v 1922 (1935)
... ..|+.+....+
T Consensus 241 ~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 241 QAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHH-HTTCHHHHHHH
T ss_pred HHH-HhcCHHHHHHH
Confidence 322 46777665553
No 136
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.6e-09 Score=147.16 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=76.2
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc-ccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~-~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
+..++++|++|.|+|++|++||+||+|+. +++||||+|++++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 896 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 896 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CTTTSCTTCEEEEEEEEECSSCEEEECTT-SCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred cHhhCCCCCEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 46899999999999999999999999965 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000173 1541 SYF 1543 (1935)
Q Consensus 1541 ~~~ 1543 (1935)
+.+
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.86 E-value=2e-08 Score=107.59 Aligned_cols=113 Identities=6% Similarity=-0.076 Sum_probs=105.9
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1749 VFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1749 vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
.|+++++..|.. ..|+.++..+.+.|++++|...|++++...|.++..|+.++..+... ++++|...|++|++..|.+
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 367777777765 89999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~ 1863 (1935)
. .+|..+|..++..|++++|...|+++++..|+..
T Consensus 104 ~--~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 104 Y--TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp C--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred c--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 4 8999999999999999999999999999999864
No 138
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.84 E-value=3.1e-10 Score=147.76 Aligned_cols=116 Identities=23% Similarity=0.517 Sum_probs=0.0
Q ss_pred EEEE-eeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCcccccccccccccC
Q 000173 1386 VKNV-TSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLS 1464 (1935)
Q Consensus 1386 V~~v-~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~~~~~~~~ 1464 (1935)
|+.+ .+.|+||+++. +|.++++..++...+...+. + . ....
T Consensus 582 I~~I~~~~G~~IdI~~--dg~v~I~~~~~~~~~~a~~~--------------------i---------~-------~i~~ 623 (723)
T 3cdi_A 582 IRALTEETGTTIEIED--DGTVKIAATDGEKAKHAIRR--------------------I---------E-------EITA 623 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeehhhCceEEecC--CccEEEecCCHHHHHHHHHH--------------------H---------H-------HHhh
Confidence 4555 45799999984 78888876554322222110 0 0 0135
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
++++|++|.|+|+++.+||+||+|.+ +++||+|+|++++.+++++.+.|++||.|+|+|+++|+ ++||+||+|..
T Consensus 624 ~~~vG~i~~G~V~~i~~fGaFVel~~-g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~ 698 (723)
T 3cdi_A 624 EIEVGRVYTGKVTRIVDFGAFVAIGG-GKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEA 698 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred hhhcCcEEEEEEEEEecceEEEEeCC-CceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 78999999999999999999999986 79999999999999999999999999999999999997 99999999985
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=4e-08 Score=104.84 Aligned_cols=117 Identities=7% Similarity=-0.113 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1747 VKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1747 ~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
...|++++...|.. ..|+.++..+.+.|++++|...|++++...|.+..+|+.++..+... ++++|...|++++...|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34577888877765 77888888888888888888888888888888888888888888888 88888888888888888
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dl 1865 (1935)
.+. .+|..+|.++...|++++|...|++++...|.+.+.
T Consensus 87 ~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEP--RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 763 788888888888888888888888888888776544
No 140
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.82 E-value=3.1e-08 Score=101.43 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=70.7
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhccccchh--hH-HHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1680 RSSPNSSFVWIKYMAFMLSMADV------EKARSIAERALQTINIREEN--EK-LNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1680 ~~~P~s~~lW~~y~~~~l~~~e~------dkAr~v~erAl~~i~~~ee~--Ek-l~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
...|+|.+.|..|+......|+. ++.|++|+||+..+|+.... ++ ..+|+.|+.++ ..+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~----------- 74 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQ----------- 74 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHH-----------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-Hhc-----------
Confidence 45799999999999999888888 89999999999988875200 00 13444444442 112
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1751 QRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1751 erAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+.++|+++|+.|++..+...++|+.||+|+.++ +..+||+++.+|+..+|..
T Consensus 75 ------------------------D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 75 ------------------------EPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp ------------------------CGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred ------------------------CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 333344444444333333377777777777777 7777777777777776655
No 141
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.82 E-value=4.3e-07 Score=123.31 Aligned_cols=145 Identities=11% Similarity=0.046 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.|..++.+|.+.|++++|.+.+.++ .+...|...+..+... ++..|+..... +. .|++.+...+.+|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii-----v~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV-----VHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh-----cCHHHHHHHHHHHH
Confidence 3444444444444444444444444 2334444444444444 44444433332 11 12345557777888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHHHHHHc
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISLSLPP-----KKMKFLFKKYLEYEKSV 1913 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~--g~~e~ar~lferal~~~~~p-----k~~k~l~~~yl~~E~~~ 1913 (1935)
+.|.+++|..+||.+|...|.++.+|..++.++.+. ++..++..+|...++ .++ .++ .+|..+.-++.++
T Consensus 1292 ~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~-~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQA-HLWAELVFLYDKY 1368 (1630)
T ss_pred HcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHH-HHHHHHHHHHHhc
Confidence 999999999999999999999999998888888875 456667778887776 555 556 6899999999999
Q ss_pred CCHHHHH
Q 000173 1914 GEEERIE 1920 (1935)
Q Consensus 1914 G~~e~a~ 1920 (1935)
|+++.|.
T Consensus 1369 ~e~dnA~ 1375 (1630)
T 1xi4_A 1369 EEYDNAI 1375 (1630)
T ss_pred ccHHHHH
Confidence 9988776
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=1.7e-08 Score=106.55 Aligned_cols=118 Identities=10% Similarity=-0.084 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1748 KVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1748 ~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
..|++++...|.. ..|+.++..+.+.|++++|...|++++...|.+..+|+.++..+... ++++|...|++++...|.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567777776654 77778888888888888888888888888888888888888888888 888888888888888877
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+. .+|..+|.+++..|++++|...|++++...|.+.+.+.
T Consensus 85 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EP--RFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred Cc--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 63 77888888888888888888888888888777655443
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=9.8e-08 Score=97.28 Aligned_cols=117 Identities=14% Similarity=0.014 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|.+.|++++...+....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHHHHH
Confidence 67888888999999999999999999999888999999999999888 9999999999999988876 58899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDV 1879 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~ 1879 (1935)
+..|++++|...|++++...|.+..+|..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888887764
No 144
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.81 E-value=5.6e-08 Score=117.11 Aligned_cols=193 Identities=9% Similarity=0.005 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------
Q 000173 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIRE-ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP------- 1759 (1935)
Q Consensus 1688 lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~e-e~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~------- 1759 (1935)
.+.+.+..+...+++++|...|++|+...+... .......|..+..++...|++ +.|...|++|++....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~--~~A~~~~~~Al~l~~~~g~~~~~ 115 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM--PEAVQYIEKASVMYVENGTPDTA 115 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGGHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHcCCHHHH
Confidence 344456677889999999999999997543211 112346777788888888955 9999999999987421
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH---- 1828 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~---- 1828 (1935)
...|..++.+|.. +++++|.+.|++++..++.. ..+|.+++.++... ++++|...|++++...|....
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 2788999999998 99999999999999988533 67899999999999 999999999999998665431
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHHH
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD-----LWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d-----lw~~ya~~e~k~g~~e~ar~l 1885 (1935)
...|...+.+++..|++++|+..|++++ .+|...+ ++..++.. ...|+.+.++.+
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~-~~~~d~~~~~~~ 254 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQA-YDEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence 3478888889999999999999999999 9886432 23333333 356777766553
No 145
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=2.1e-07 Score=112.37 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=184.8
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc-C-CCCHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY-G-NPPEE 1744 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~-e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~-g-~~~~e 1744 (1935)
.+++...++++|..+|++..+|..-.......+ .++++...+++++...|. . ..+|.....+...+ + .+ +
T Consensus 70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-n----y~aW~hR~wlL~~l~~~~~--~ 142 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-S----YQVWHHRLLLLDRISPQDP--V 142 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-C----HHHHHHHHHHHHHHCCSCC--H
T ss_pred CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-c----HHHHHHHHHHHHHhcCCCh--H
Confidence 667888999999999999999999999998888 599999999999976553 2 46999888777766 6 55 7
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C------
Q 000173 1745 AVVKVFQRALQYCDP-KKVHLALLGLYERTEQNK--------LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q------ 1808 (1935)
Q Consensus 1745 ~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~--------~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~------ 1808 (1935)
.+.+.++++++..|. ...|....-++.+.+.++ ++.+.+.+++...+.+..+|...+..+... .
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 889999999999886 499999888888887777 999999999999999999999998877665 5
Q ss_pred -HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHhC------CC
Q 000173 1809 -QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVA--------------------DRGRSMFEGILSEY------PK 1861 (1935)
Q Consensus 1809 -~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~--------------------e~Ar~ife~al~~~------Pk 1861 (1935)
++++.+.+.+++...|.+. .+|.....++.+.|.. +........++... +.
T Consensus 223 ~~~eELe~~~~aI~~~P~n~--SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNV--SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7899999999999999984 8998888888777654 22222222222222 46
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 000173 1862 RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYL 1907 (1935)
Q Consensus 1862 ~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl 1907 (1935)
+..+|.-+++++...|+.++|..+|+.+.. +..|-+. ..|.-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~-~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRA-GYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGH-HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHH-HHHHHHH
Confidence 788999999999999999999999999875 5777776 5776544
No 146
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.80 E-value=1.7e-09 Score=141.64 Aligned_cols=79 Identities=35% Similarity=0.605 Sum_probs=74.8
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
.+.++++|++|.|+|++|++||+||+|+. +++||||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|.+
T Consensus 648 ~~~~l~vG~iv~G~V~~V~~fGaFV~l~~-~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~ 726 (785)
T 3bzc_A 648 SLKDLKPGMVLEGVVTNVTNFGAFVDIGV-HQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMS 726 (785)
T ss_dssp SSTTCCTTCBCCCEEEEEETTEEEEECSS-SSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSC
T ss_pred chhhcCCCCEEEEEEEEEecCCeEEEeCC-CcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecC
Confidence 46789999999999999999999999965 79999999999999999999999999999999999999999999999864
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=6e-08 Score=99.59 Aligned_cols=116 Identities=10% Similarity=-0.050 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++.+.+++++|.+.|++++...+.+..+|+.++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHHHHH
Confidence 77888888888999999999999999988888889999999888888 9999999999999988775 58889999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGD 1878 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~ 1878 (1935)
+..|++++|...|++++...|.+..+|..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999888888888888877653
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=4.4e-08 Score=116.51 Aligned_cols=191 Identities=11% Similarity=-0.070 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-H
Q 000173 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-K 1761 (1935)
Q Consensus 1683 P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~ 1761 (1935)
|+++..|...+..+...|++++|...|++|++..|.. ..+|..+...+...| ..+.|...|++|++..|.. .
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~ 73 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALCYLKMQ--QPEQALADCRRALELDGQSVK 73 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHHHHHTT--CHHHHHHHHHHHTTSCTTCHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCCHH
Confidence 6788999999999999999999999999999876632 468999999999999 4599999999999998875 9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~-----~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
.|+.++.+|...|++++|...|+++++..|++ ..+|..+. ..++...........|... .++..++
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~i~~~l~ 144 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-------IAKKKRWNSIEERRIHQES--ELHSYLT 144 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-------HHHHHHHHHHHHTCCCCCC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 99999999999999999999999999987644 34444332 2222233333333455553 5666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-g~~e~ar~lferal~ 1891 (1935)
.+. .|++++|...|+++++..|.+..++..+..++.+. +.+++|+.+|+++..
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 654 68999999999999999999888888888777776 678899999998875
No 149
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.78 E-value=1e-08 Score=113.70 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=69.6
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccccc-----------CcccccCCCCEEEEEEEEEecCCC
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
....+|+++.|+|+++++||+||+|.+ ++||+|+|+++++++. +....|++||.|+++|+++|.+++
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~~--~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLGP--LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS--SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC-
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEcC--ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccC
Confidence 356889999999999999999999964 9999999999988765 677899999999999999998765
Q ss_pred -----eeEEeccccccC
Q 000173 1533 -----RISLGMKSSYFK 1544 (1935)
Q Consensus 1533 -----ri~lslK~~~~~ 1544 (1935)
+|.||+|..+.+
T Consensus 155 ~p~~~~I~lS~k~~~LG 171 (187)
T 1go3_E 155 RKRGSKIALTMRQPYLG 171 (187)
T ss_dssp ----CEEEEECCSTTCE
T ss_pred CCCccEEEEEEcCCCCC
Confidence 999999986653
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.78 E-value=4.6e-08 Score=107.07 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=66.7
Q ss_pred cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH-HHHcCCH--HHH
Q 000173 1773 TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL-EFKNGVA--DRG 1848 (1935)
Q Consensus 1773 ~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l-e~~~g~~--e~A 1848 (1935)
.+++++|.+.|++++...|.+..+|+.++..+... ++++|...|+++++..|.+ ..+|..+|.+ ++..|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhcCCcchHHH
Confidence 44555555555555555555556666666655555 6666666666666555544 3555555555 4455555 666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
...|++++..+|.+..+|..++.++...|+++.|...|++++.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666555666666666666666666666666655
No 151
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=5.3e-08 Score=100.81 Aligned_cols=113 Identities=10% Similarity=-0.050 Sum_probs=103.1
Q ss_pred hcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1789 KFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1789 ~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
..|.....|...|..+++. ++++|.+.|++|++..|.+ ..+|..+|..++..|++++|...|+++++.+|++...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN--AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4466778899999999999 9999999999999999987 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 000173 1868 IYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKY 1906 (1935)
Q Consensus 1868 ~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~y 1906 (1935)
.++..+...|++++|...|++++. +.|... ..+..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~-~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQ--VDPSNE-EAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCcCCH-HHHHHH
Confidence 999999999999999999999999 777776 344433
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.78 E-value=1.4e-08 Score=124.19 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=134.6
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILE 1839 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------~~~~~~~a~le 1839 (1935)
.++++|.+.|++++...+.....|..++..++.. ++++|...|++|+...|.... ..+|..+|.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777766677888999999999999 999999999999999988731 48999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERI 1919 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a 1919 (1935)
++.|++++|...|+++++.+|.+..+|+.++..+...|++++|+..|++++. +.|... ..|..+.......|+.+.+
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK-AAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 777776 5777778888888888777
Q ss_pred -HHHHHHHHHHHH
Q 000173 1920 -EYVKQKAMEYVE 1931 (1935)
Q Consensus 1920 -~~v~~rAle~v~ 1931 (1935)
+.+|++++..+.
T Consensus 284 ~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 284 EKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 567887776654
No 153
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.77 E-value=3.6e-09 Score=122.58 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred ccCCCCEEEEEEEEEecCeEEEEEC--CCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeeccccc
Q 000173 758 HIHPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1935)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G~fV~f~--~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~~~~ 835 (1935)
.+++|+.+.|.|++|+++|+||++. +++.||+|.|++++.++.++.+.|++||.|.|+|+++|++++++.||++....
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~ 87 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTD 87 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecch
Confidence 4578999999999999999999997 89999999999999999999999999999999999999999999999998753
No 154
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.75 E-value=9.3e-10 Score=147.43 Aligned_cols=81 Identities=11% Similarity=0.189 Sum_probs=0.4
Q ss_pred ccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCccc-ccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH-VDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1462 ~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~-~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
...++++|++|.|+|++|++||+||+|++ +++||||+|++++.+ +.++.+.|++||.|+|+|++||.+++||+||||.
T Consensus 899 t~~~l~~G~iv~G~V~~V~~fGaFV~L~~-gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 899 SEKTFFKGSIIPVRVERFWHNDIICTTNS-EVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cHHHhcCCCEEEEEEEEEccCeEEEEeCC-CcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 45899999999999999999999999975 899999999999998 8899999999999999999999999999999998
Q ss_pred ccc
Q 000173 1541 SYF 1543 (1935)
Q Consensus 1541 ~~~ 1543 (1935)
+.+
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 654
No 155
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.75 E-value=1.5e-07 Score=106.00 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~ 1807 (1935)
+..........| ..+.|...|++++ .+...+|..++.+|...+++++|.+.|++++...|....+|+.++..+...
T Consensus 9 ~~~~g~~~~~~~--~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKK--DWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344555555666 3367777777764 334467777777777777777777777777777777777777777777776
Q ss_pred -CHHHHHHHHHHHHHhCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1808 -QQEGVQAVVQRALLSLPRHK--------------HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~--------------~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++++|...|+++++..|... ...+|..+|.+++..|++++|...|++++...|..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77777777777777666543 34667777777777777777777777777777664
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.6e-07 Score=96.42 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++..+.+.+++++|.+.|+++++..|.+..+|..++..+... ++++|...|+++++..|.. ..+|..+|.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHH
Confidence 45677777777888888888888888888787888888888888777 8888888888888887766 57788888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEY------PKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~------Pk~~dlw~~ya~~e~ 1874 (1935)
+..|++++|...|+++++.. |.+..+|..+.....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88888888888888888877 777777776665543
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.75 E-value=2.5e-07 Score=93.32 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|.+.|+++++..+....+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888888888 8888888888888887766 57888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
+..|++++|...|++++...|.+..+|..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888777766543
No 158
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1e-08 Score=139.50 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=77.5
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1371 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~-~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
+++.++++|++|.|+|++|+++|+||+|+.+++|+||+++|+|.| +.+|.+.|++||.|+|+|++||.++++|.||+|.
T Consensus 895 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 974 (1219)
T 3psi_A 895 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 974 (1219)
T ss_dssp CCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCH
T ss_pred CcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecH
Confidence 345789999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred Ccc
Q 000173 1450 SDS 1452 (1935)
Q Consensus 1450 ~~~ 1452 (1935)
+..
T Consensus 975 ~dl 977 (1219)
T 3psi_A 975 HDV 977 (1219)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.8e-07 Score=93.42 Aligned_cols=111 Identities=13% Similarity=-0.080 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|...|++++...|.+..+|..++..+... ++++|...|++++...|.. ..+|..+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHHHHH
Confidence 56777777888888888888888888888888888888888888777 8888888888888887765 57788888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
...|++++|+..|++++...|.+..+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8888888888888888888888877777776654
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=2.6e-07 Score=99.00 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
....|..++..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++..+|.+..+|..++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 356788999999999 9999999999999999877 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 000173 1872 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK--KYLEYEKSVGEEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~--~yl~~E~~~G~~e~a~~v~~rAle~v~~ 1932 (1935)
.+...|+++.|...|++++. ..|... ..|. ..+......|+.+.|...++++.+...+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVK--VKPHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999998 555555 3443 3333355678999999999998887654
No 161
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.73 E-value=6.1e-07 Score=121.85 Aligned_cols=219 Identities=14% Similarity=0.069 Sum_probs=135.7
Q ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000173 1674 EFERLVRS--SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1935)
Q Consensus 1674 ~ferll~~--~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vfe 1751 (1935)
.|++++.. ..++..+|.+|+..+++.|++++|...|.+|= + ...|+..+....+.|. .++|.+.|.
T Consensus 1091 nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAd-------D---~say~eVa~~~~~lGk--yEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-------D---PSSYMEVVQAANTSGN--WEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcC-------C---hHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence 44555432 35788889999999999999999998888761 1 2467778888888884 488888888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH
Q 000173 1752 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK 1830 (1935)
Q Consensus 1752 rAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~ 1830 (1935)
.|.+..+...+...++..|.+.+++++ .+.|- ...+..-|..+|..+... ++++|..+|.+| .
T Consensus 1159 mArk~~~e~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ 1222 (1630)
T 1xi4_A 1159 MARKKARESYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 1222 (1630)
T ss_pred HHHhhcccccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------h
Confidence 888776444344445555555555553 22221 122334555666666666 666666666664 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------------------------HHHHHHHHcCCHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS------------------------------IYLDQEIRLGDVD 1880 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~------------------------------~ya~~e~k~g~~e 1880 (1935)
.|...|..+.+.|+++.|...++++ .+...|. ..+.++.+.|.++
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHH
Confidence 5666666666666666666666665 2223333 4445566677777
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE--EERIEYVKQKAME 1928 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~--~e~a~~v~~rAle 1928 (1935)
+|..+||.++. +.+..+ .+|..+..++.++.. ..+..+.|...+.
T Consensus 1298 EAI~LlE~aL~--LeraH~-gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1298 ELITMLEAALG--LERAHM-GMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHhc--cChhHh-HHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 77777777776 556666 567666666555532 3333444444443
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=3e-08 Score=116.10 Aligned_cols=206 Identities=12% Similarity=0.028 Sum_probs=162.5
Q ss_pred ccCCCCcHHHHHHHHHcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhccc----cch------------
Q 000173 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKY-------MAFMLSMADVEKARSIAERALQTINI----REE------------ 1721 (1935)
Q Consensus 1665 ~~~~~~a~~~ferll~~~P~s~~lW~~y-------~~~~l~~~e~dkAr~v~erAl~~i~~----~ee------------ 1721 (1935)
..+...+...|.+++..+|...+.|+.+ ...+........+...+.|++..-|- +-.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v 98 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPV 98 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEEC
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccccc
Confidence 4557778889999999999999999999 56677777777777888888862111 000
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHH
Q 000173 1722 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL 1798 (1935)
Q Consensus 1722 ~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~ 1798 (1935)
..+-.+|++|..+.+..|+ .+.|.+.|++++...|....++.++.++.+.+++++|...|+.+... ++. ..+|+
T Consensus 99 ~~r~dl~LayA~~L~~~g~--y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~a~~ 175 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGN--YADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGAAGV 175 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTC--HHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHHHHH
Confidence 1233688999999999994 49999999999887776558888888999999999999999866542 222 45888
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~--p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k 1875 (1935)
.++..+... ++++|...|++++... |.. ...+++..|..+.++|+.++|+.+|++++..+|. ..+|..+.+..++
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCC
Confidence 999988888 9999999999998543 322 3578999999999999999999999999999999 8888887766554
No 163
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.73 E-value=1.3e-09 Score=141.06 Aligned_cols=77 Identities=31% Similarity=0.528 Sum_probs=0.0
Q ss_pred cCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1463 ~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++++|++|.|+|++|.+||+||+|.+ +++||||+|+++++++.++.+.|++||.|+|+|+++|+ ++||.||+|..
T Consensus 632 ~~~~~vG~v~~G~V~~I~~fGaFVel~~-g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~ 708 (726)
T 4aid_A 632 TDEAEVGKIYDGKVVKVVDFGAFVNFFG-AKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVV 708 (726)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred hhhhcCCcEEEEEEEEEeccEEEEEECC-CcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeec
Confidence 4688999999999999999999999987 79999999999999999999999999999999999997 89999999985
No 164
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.71 E-value=2e-08 Score=112.11 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=71.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEec-------CceeEEeeccccCccccc--CcccccCCCCEEEEEEEEEecCCCeeE
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIEN-------TNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~-------~~v~Gl~h~sels~~~~~--~~~~~~~~Gd~V~~~Il~id~~~~ri~ 1535 (1935)
.+++||+|.|+|+++.++|+||+|.. .++.|++|+||+++.+++ ++.+.|++||.|+|+|++++.+.+++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 67999999999999999999999852 267999999999999888 899999999999999999997778999
Q ss_pred Eecccccc
Q 000173 1536 LGMKSSYF 1543 (1935)
Q Consensus 1536 lslK~~~~ 1543 (1935)
||+|....
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99998544
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.71 E-value=7.5e-08 Score=105.31 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHc-CH--HHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQR-LLKQ-QQ--EGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~-l~~~-~~--e~A~~ll~r 1818 (1935)
+.|...|+++++..|.. ..|..++.+|...+++++|...|+++++..|.+..+|..++.. +... ++ ++|...|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 77899999999998865 9999999999999999999999999999999999999999999 6666 77 999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal 1890 (1935)
++...|.+ ..+|..+|.+++..|++++|...|++++...|.+.+.+.... .+.+++.++....
T Consensus 107 al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------~i~~~~~~~~~~~ 169 (177)
T 2e2e_A 107 ALALDSNE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE-------SINMAKLLQRRSD 169 (177)
T ss_dssp HHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHhCCCc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH-------HHHHHHHhcCCCC
Confidence 99999887 589999999999999999999999999999999866554332 2345555555443
No 166
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.70 E-value=2.4e-08 Score=109.87 Aligned_cols=79 Identities=27% Similarity=0.616 Sum_probs=67.8
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-----------cCcccccCCCCEEEEEEEEEecC--
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKE-- 1530 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~V~~~Il~id~~-- 1530 (1935)
.+..+|+++.|+|+++++||+||++. .++||+|+|++.+++. ++....|++||.|+++|+++|++
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~--~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLG--PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVT 154 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECS--SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC---
T ss_pred eeccCCCEEEEEEeeeccceEEEEEC--CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCC
Confidence 46789999999999999999999996 4899999999999876 45677899999999999999864
Q ss_pred --CCeeEEeccccccC
Q 000173 1531 --KRRISLGMKSSYFK 1544 (1935)
Q Consensus 1531 --~~ri~lslK~~~~~ 1544 (1935)
..||.||||+.+.+
T Consensus 155 ~~~~rI~ls~k~~gLG 170 (180)
T 4ayb_E 155 GRLPRIALTMRQPYLG 170 (180)
T ss_dssp ----CEEEECCSTTCE
T ss_pred cccCcEEEEcCCCCCC
Confidence 45999999987653
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.6e-07 Score=101.41 Aligned_cols=109 Identities=10% Similarity=-0.085 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|.+.+++++|.+.|++++...|.+..+|+.++..++.. ++++|...|++++...|.+ ..+|..+|.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999 9999999999999998877 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1840 FKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
+..|++++|...|+++++.+|.+.+.|.....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999998776655443
No 168
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.70 E-value=5.9e-09 Score=136.52 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=77.5
Q ss_pred hhhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1370 ~~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
+..+.++++|+++.|+|++|+++|+||+|+.+++|+||+++|+|.|+.+|.+.|++||.|+|+|+++|.++++|.||+|.
T Consensus 646 ve~~~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~ 725 (785)
T 3bzc_A 646 VESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRM 725 (785)
T ss_dssp CCSSTTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSS
T ss_pred ccchhhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEECCCCEEEEEEec
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred Cc
Q 000173 1450 SD 1451 (1935)
Q Consensus 1450 ~~ 1451 (1935)
+.
T Consensus 726 ~~ 727 (785)
T 3bzc_A 726 SD 727 (785)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=5.2e-07 Score=102.29 Aligned_cols=174 Identities=10% Similarity=-0.098 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----ChHHH
Q 000173 1704 KARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTE----QNKLA 1779 (1935)
Q Consensus 1704 kAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~----~~~~A 1779 (1935)
+|...|+++.+.-+ ...|..+..++...+ +.++|...|++|++.. ....+..++.+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g~-------~~a~~~lg~~~~~~~--~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAGD-------RRAQYYLADTWVSSG--DYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTTC-------HHHHHHHHHHHHHHT--CHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCCC-------HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 45666777775422 235666666666667 4588888888888764 34677778888776 6 78888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHH
Q 000173 1780 DELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRGRS 1850 (1935)
Q Consensus 1780 ~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ 1850 (1935)
.+.|++++. +..+..++.++.++.. . ++++|...|++|+...+...++..+..+|.++.. .+++++|..
T Consensus 73 ~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 73 RQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 888888865 3678888888888876 5 8888888888888765432236788888888887 778888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHh
Q 000173 1851 MFEGILSEYPKRTDLWSIYLDQEIRL-G-----DVDLIRGLFERAIS 1891 (1935)
Q Consensus 1851 ife~al~~~Pk~~dlw~~ya~~e~k~-g-----~~e~ar~lferal~ 1891 (1935)
.|++++.. |.+...+..++.++..- | +.++|...|++++.
T Consensus 151 ~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 151 YFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 88888877 55666777777777653 3 78888888888887
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=6.4e-08 Score=115.06 Aligned_cols=188 Identities=11% Similarity=-0.103 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
..|..+.+.....| ..+.|...|++|++..|. ..+|..++.+|...+++++|...|+++++..|.+..+|+.++..+
T Consensus 5 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGR--KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46777777777888 448888888888888775 478888888888888888888888888888888888888888888
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKH---IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e 1880 (1935)
... ++++|...|+++++..|.+.. ..+|..+. ..++...........|....++..+..+. .|+++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--------IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHH
Confidence 888 888888888888887765421 02222221 12223333333345666667777666654 68889
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSV-GEEERIEYVKQKAME 1928 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~-G~~e~a~~v~~rAle 1928 (1935)
+|...|++++. +.|... .+......+..+. +..+.+..+|++|.+
T Consensus 153 ~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDG-HIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHH-HHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999998 666655 4555555555544 567778888887653
No 171
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=7.9e-08 Score=102.49 Aligned_cols=110 Identities=7% Similarity=-0.106 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1780 DELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1780 ~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
...|++++...|.+...|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++..
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3457788888888899999999999999 9999999999999999987 599999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1859 YPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1859 ~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.|.+..+|+.++..+...|++++|+..|++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998
No 172
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=4.6e-07 Score=102.77 Aligned_cols=176 Identities=7% Similarity=-0.041 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRA 1819 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ra 1819 (1935)
.+|...|++|++. .....++.++.+|...+++++|.+.|++++.. .++..|+.++.++... ++++|...|++|
T Consensus 3 ~eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIRNPQQADYPQARQLAEKA 79 (212)
T ss_dssp -CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4578889999987 45688899999999999999999999999875 6899999999998876 799999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 000173 1820 LLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSEYPK--RTDLWSIYLDQEIR----LGDVDLIRGLFERA 1889 (1935)
Q Consensus 1820 lk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~~Pk--~~dlw~~ya~~e~k----~g~~e~ar~lfera 1889 (1935)
+.. . ++..+..+|.+++. .+++++|..+|++++...|. ....+..++.++.. .++.++|..+|+++
T Consensus 80 ~~~--g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA--G--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT--T--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC--C--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 764 2 46899999999987 88999999999999998884 47899999999998 88999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Q 000173 1890 ISLSLPPKKMKFLFKKYLEYEKSVG-----EEERIEYVKQKAMEY 1929 (1935)
Q Consensus 1890 l~~~~~pk~~k~l~~~yl~~E~~~G-----~~e~a~~v~~rAle~ 1929 (1935)
+.. +.... ..+..-.-++...| |.+.|...|++|.+.
T Consensus 156 ~~~--~~~~~-a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 156 SSL--SRTGY-AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHT--SCTTH-HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHc--CCCHH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 993 21111 23333333444445 899999999999864
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.67 E-value=2.5e-06 Score=102.64 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=169.9
Q ss_pred HHcCCH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCC---C-----CHHHHHHHHHHHHhcCCC-HHHHHHH
Q 000173 1697 LSMADV-EKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN---P-----PEEAVVKVFQRALQYCDP-KKVHLAL 1766 (1935)
Q Consensus 1697 l~~~e~-dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~---~-----~~e~a~~vferAl~~~~~-~~v~~~l 1766 (1935)
.+.+++ ++|..+++++|...| .. ..+|.....+....+. + ..+.+...++.+++.+|. ..+|...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~----ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DF----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TC----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hh----HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 345555 479999999996544 22 4688765555444431 0 036788899999998886 4999999
Q ss_pred HHHHHHcCC--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q 000173 1767 LGLYERTEQ--NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q-QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN 1842 (1935)
Q Consensus 1767 ~~i~~~~~~--~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~-~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~ 1842 (1935)
.-++...++ ++++.+.+.+++...|.+..+|....-.+... . ++++.+.+.+++..+|.+ ..+|...+.++...
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHh
Confidence 999999884 89999999999999999999999998777766 5 699999999999999988 48999999888766
Q ss_pred --------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCch
Q 000173 1843 --------------GVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL-----------GDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1843 --------------g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~-----------g~~e~ar~lferal~~~~~pk 1897 (1935)
+.++++...+.+++..+|.+..+|+.+--+..+. +-++++...++.++. +.|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd 270 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPE 270 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCcc
Confidence 4588999999999999999999998766665544 346788999999998 6666
Q ss_pred hHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Q 000173 1898 KMKFLFKKYLEYEK---SVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1898 ~~k~l~~~yl~~E~---~~G~~e~a~~v~~rAle 1928 (1935)
.. -.+...+.+.. ..|..++++..+.+.++
T Consensus 271 ~~-w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 271 NK-WCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CH-HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cc-hHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 53 33333333332 24666666666666543
No 174
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=5.1e-08 Score=102.84 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1781 ELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1781 el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
..|++++...|.....|+.++..++.. ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++..+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456677777778889999999999999 9999999999999999987 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1860 PKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1860 Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|.+..+|..++..+...|+++.|...|++++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998
No 175
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.65 E-value=6.8e-07 Score=113.85 Aligned_cols=186 Identities=6% Similarity=-0.064 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHhcCCCH
Q 000173 1688 VWIKYMAFMLSMA---DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY----GNPPEEAVVKVFQRALQYCDPK 1760 (1935)
Q Consensus 1688 lW~~y~~~~l~~~---e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~----g~~~~e~a~~vferAl~~~~~~ 1760 (1935)
.|..++..+...+ ++++|...|++|...-+... ..|..+..++..- . +.++|...|++|+ ....
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-----~~~~~Lg~~y~~g~~~~~--d~~~A~~~~~~aa--~g~~ 248 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-----QRVDSVARVLGDATLGTP--DEKTAQALLEKIA--PGYP 248 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-----HHHHHHHHHHTCGGGSSC--CHHHHHHHHHHHG--GGST
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHc--CCCH
Confidence 4555555555555 55555555555554333211 1222233322111 2 2355555555554 1122
Q ss_pred HHHHHHHHH-H--HHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHhCCCCChHHHH
Q 000173 1761 KVHLALLGL-Y--ERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGVQAVVQRALLSLPRHKHIKFI 1832 (1935)
Q Consensus 1761 ~v~~~l~~i-~--~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----~~e~A~~ll~ralk~~p~~~~~~~~ 1832 (1935)
..++.++.+ | ...+++++|.+.|+++... .++..++.++.++... ++++|...|++|. +.+ +..+
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa---~g~--~~A~ 321 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV---GRE--VAAD 321 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT---TTC--HHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh---CCC--HHHH
Confidence 444555554 2 2345555555555555532 3455555555555532 5555555555554 222 3455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 000173 1833 SQTAILEFK----NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1833 ~~~a~le~~----~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~ 1891 (1935)
..+|.++.. ..++++|..+|+++... .+.+.+..++.++.. ..+.++|...|++|..
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 555544443 22555555555555432 233344444444442 2345555555555554
No 176
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.65 E-value=7.6e-07 Score=100.07 Aligned_cols=125 Identities=8% Similarity=-0.090 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
.|+.++..+...+++++|.+.|++++ +.+..+|+.++..+... ++++|...|++++...|.. ..+|..+|.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHH
Confidence 35677889999999999999999986 44889999999999999 9999999999999999877 689999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1841 KNGVADRGRSMFEGILSEYPKRT----------------DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1841 ~~g~~e~Ar~ife~al~~~Pk~~----------------dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..|++++|...|+++++..|.+. .+|..++..+.+.|+++.|...|++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999888766 8999999999999999999999999998
No 177
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=9.7e-07 Score=105.29 Aligned_cols=165 Identities=6% Similarity=-0.060 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---- 1793 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---- 1793 (1935)
...|...+......++ .+.|.+.|+++++..+.. ..+..++.+|...+++++|.+.|++++......
T Consensus 75 ~~~l~~~~~~~~~~~~--y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKR--YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHhhh--HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 4456677777788884 599999999999876542 445567778888899999999999999765432
Q ss_pred --HHHHHHHHHHHHHc-CHHHHHHHHHHHH---HhCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 000173 1794 --CKVWLRRVQRLLKQ-QQEGVQAVVQRAL---LSLPRHKH--IKFISQTAILEFKNGVADRGRSMFEGILSEYPK---- 1861 (1935)
Q Consensus 1794 --~~vw~~~~~~l~~~-~~e~A~~ll~ral---k~~p~~~~--~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk---- 1861 (1935)
..+|..++..+... ++++|..+|++|+ +..|.... +.++..+|.+++..|++++|...|++++...++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 56889999999999 9999999999999 55655432 258999999999999999999999999987543
Q ss_pred --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 000173 1862 --RTDLWSIYLDQEIRLGDVDLI-RGLFERAIS 1891 (1935)
Q Consensus 1862 --~~dlw~~ya~~e~k~g~~e~a-r~lferal~ 1891 (1935)
...+|...+..+.+.|++++| ...|++|+.
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 266899999999999999999 888999886
No 178
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.4e-07 Score=93.90 Aligned_cols=112 Identities=7% Similarity=-0.051 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
....|...+..++.. ++++|...|++++...|.. ..+|..+|..++..|++++|...|+++++.+|.+...|..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456899999999999 9999999999999999987 5999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------chhHHHHHHHHHHH
Q 000173 1872 QEIRLGDVDLIRGLFERAISLSLP------PKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~~~~~------pk~~k~l~~~yl~~ 1909 (1935)
.+...|++++|...|++++. +. |... .++..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~p~~~-~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART--KDAEVNNGSSAR-EIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HHHHHHTTTTHH-HHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH--hCcccCCchhHH-HHHHHHHHH
Confidence 99999999999999999998 55 5544 345444433
No 179
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=1.6e-07 Score=109.87 Aligned_cols=198 Identities=7% Similarity=-0.125 Sum_probs=158.0
Q ss_pred HcCCHHHHHHHHHHHHHhccccchhhHHHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHhcCCC-----------
Q 000173 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAY-------FNLENEYGNPPEEAVVKVFQRALQYCDP----------- 1759 (1935)
Q Consensus 1698 ~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ay-------l~le~~~g~~~~e~a~~vferAl~~~~~----------- 1759 (1935)
+.++.+.|+..|.+|+...|.. ...|+.+ .......+.. ..+...+.+++...|.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~-----~Daw~g~~a~g~~~~~~L~~~~r~--~~a~~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESA-----CDAWIGRIRCGDTDRVTLFRAWYS--RRNFGQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHTTCCCHHHHHHHHHT--GGGTTHHHHTTTCCGGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhChhh-----hHHHHhHHHccCCcHHHHHHHHHH--HHHHHHHHHHhcCChhhhhhhhccCCc
Confidence 4689999999999999766532 4699988 4444444422 5566778888884431
Q ss_pred -----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC
Q 000173 1760 -----------KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK 1827 (1935)
Q Consensus 1760 -----------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~ 1827 (1935)
..+++.|+.++...|+|++|.++|..+....|... .++.++..+++. ++++|...|+.++...+...
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 47889999999999999999999999987777667 888888888888 99999999997765321111
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 000173 1828 HIKFISQTAILEFKNGVADRGRSMFEGILSEY--PK-RTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFK 1904 (1935)
Q Consensus 1828 ~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~--Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~ 1904 (1935)
...+++..+..+...|++++|...|++++... |. ..+.|+.++..+.++|+.++|+.+|++++. ..|. . ..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~-~-~~~~ 245 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE-P-KVAA 245 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC-H-HHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-H-HHHH
Confidence 13589999999999999999999999998654 66 678999999999999999999999999999 6665 4 4555
Q ss_pred HHH
Q 000173 1905 KYL 1907 (1935)
Q Consensus 1905 ~yl 1907 (1935)
...
T Consensus 246 aL~ 248 (282)
T 4f3v_A 246 ALK 248 (282)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 180
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=3e-07 Score=94.28 Aligned_cols=119 Identities=10% Similarity=-0.030 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIY 1869 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~y 1869 (1935)
+.....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD--AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC--HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45678899999999999 9999999999999998876 68999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcC
Q 000173 1870 LDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVG 1914 (1935)
Q Consensus 1870 a~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G 1914 (1935)
+..+...|+++.|+..|++++. ..|... ..|..+.......|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD--LDSSCK-EAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCGGGT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH--hCCCch-HHHHHHHHHHHHhc
Confidence 9999999999999999999998 666665 46666666555544
No 181
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.63 E-value=1.3e-06 Score=111.11 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---Hc-CHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPK-KVHLALLGLYERT----EQNKLADELLYKMIKKFKHSCKVWLRRVQRLL---KQ-QQEGVQA 1814 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~-~v~~~l~~i~~~~----~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~---~~-~~e~A~~ 1814 (1935)
++|...|++|++..+.. ..|+.++.+|... .++++|.+.|+++. +.++..|+.++.+++ .. ++++|..
T Consensus 196 ~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 196 AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 66777777777776654 5566777777554 57777777777776 567777777777644 22 7778888
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 000173 1815 VVQRALLSLPRHKHIKFISQTAILEFKNG-----VADRGRSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGL 1885 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~~~~~~~a~le~~~g-----~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~l 1885 (1935)
.|++|+... +...+..+|.+++ .| ++++|...|+++. |.+...++.++.++.. ..++++|...
T Consensus 273 ~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 887777542 3577777777776 45 7788888888777 7777777777777665 3477788888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLEYEKSVG---EEERIEYVKQKAME 1928 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~~E~~~G---~~e~a~~v~~rAle 1928 (1935)
|+++.....+. + .+..-.-++...| |...|...|++|.+
T Consensus 345 ~~~Aa~~g~~~--A--~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 345 LLTAARNGQNS--A--DFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHTTTCTT--H--HHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHhhChHH--H--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 88877733322 2 2222222232222 67777777777754
No 182
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.63 E-value=1.5e-09 Score=141.89 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=38.6
Q ss_pred cccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCcc----CcccccCcccCccCCCEEEEEEEEeeCCCCeEEEeecc
Q 000173 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA----VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1935)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~l----s~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSlk~ 832 (1935)
.++++|+++.|+|++|++||+||++.+|+.||+|+|++ +++++.++++.|++||.|+|+|+++|+ ++|+.||+|+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~ 741 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RGKLSLIPVI 741 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SCC-------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CCCEEEEEec
Confidence 45778999999999999999999999999999999999 999999999999999999999999998 9999999997
Q ss_pred ccc
Q 000173 833 SCC 835 (1935)
Q Consensus 833 ~~~ 835 (1935)
...
T Consensus 742 ~~~ 744 (757)
T 1e3p_A 742 EGE 744 (757)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 183
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.62 E-value=2.8e-07 Score=102.95 Aligned_cols=128 Identities=11% Similarity=-0.014 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHc-CHHHHHHHHHHHHHhC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC----------------KVWLRRVQRLLKQ-QQEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~----------------~vw~~~~~~l~~~-~~e~A~~ll~ralk~~ 1823 (1935)
..|..++..+...+++++|.+.|.+++...+..+ .+|..++..++.. ++++|...|+++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4566666677777777777777777777666554 8899999999988 9999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 000173 1824 PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAI 1890 (1935)
Q Consensus 1824 p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar-~lferal 1890 (1935)
|.. ..+|..+|.+++..|++++|...|+++++..|.+..+|..++.++...++.+++. ..|.++.
T Consensus 119 p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 KNN--VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred ccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876 5899999999999999999999999999999999999999998888777666554 4444433
No 184
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=1.7e-06 Score=104.51 Aligned_cols=232 Identities=10% Similarity=-0.012 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLA 1765 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~ 1765 (1935)
.+|-.+-+........++|.++++++|...|- . ..+|.....+...++. ..+++.+.++++++.+|.. .+|..
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~----ytaWn~R~~iL~~l~~-~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPA-H----YTVWQYRFSLLTSLNK-SLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-C----HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-h----HHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34443333333444557899999999976552 2 4699988888777884 2689999999999999875 99999
Q ss_pred HHHHHHHc-C-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHH--------HHHHHHHHHHHhCCCCChHHHHHH
Q 000173 1766 LLGLYERT-E-QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQE--------GVQAVVQRALLSLPRHKHIKFISQ 1834 (1935)
Q Consensus 1766 l~~i~~~~-~-~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e--------~A~~ll~ralk~~p~~~~~~~~~~ 1834 (1935)
...++.+. + +++++.+.+.+++...+.+..+|....-.+... .++ ++.+.+.+++..+|.+ ..+|..
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N--~SAW~~ 206 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN--NSAWGW 206 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence 99999887 7 899999999999999999999999887766665 444 8999999999999988 489999
Q ss_pred HHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----------------HHHHHHHHH
Q 000173 1835 TAILEFKNGV-------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDL-----------------IRGLFERAI 1890 (1935)
Q Consensus 1835 ~a~le~~~g~-------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~-----------------ar~lferal 1890 (1935)
.+.++...+. ++++...+.+++..+|.+..+|+.+.-++.+.|.... .-.+-+-++
T Consensus 207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (349)
T 3q7a_A 207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF 286 (349)
T ss_dssp HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH
Confidence 9999988886 7899999999999999999999988888877665410 112223332
Q ss_pred hc---C----CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1891 SL---S----LPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1891 ~~---~----~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.. . ..++.. ..+.-.++.+.+.|+.++|..+|+...
T Consensus 287 ~~~~~~~~~~~~~~s~-~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 287 PMPSDPLPEDTPLPVP-LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCCC-CCCSSCCSCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccccCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 21 1 012222 455555566667899988888888765
No 185
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.61 E-value=3.4e-08 Score=121.84 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000173 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1935)
Q Consensus 1667 ~~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a 1746 (1935)
+..+|...+++. +.+.+|..++..+++.+++++|.+.|.++-.. ..|...+.-...+|.+ +.|
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~----------~~y~~V~~~ae~~g~~--EeA 80 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP----------SSYMEVVQAANTSGNW--EEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCH----------HHHHHHHHHHHhCCCH--HHH
Confidence 366777777777 33469999999999999999999999886421 2466666666667854 888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC
Q 000173 1747 VKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR 1825 (1935)
Q Consensus 1747 ~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~ 1825 (1935)
...++.+.+..+...+...++.+|.+.|++.++.++|+. .+...|...+..+... ++++|+.+|.++
T Consensus 81 i~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 81 VKYLQMARKKARESYVETELIFALAKTNRLAELEEFING------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ----------------------------CHHHHTTTTTC------C----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 888888887654456677777777777777777766642 2335777777777777 777777777765
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKK 1905 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~ 1905 (1935)
.-|..+|..+.+.|+++.|...|+++ .++..|......+...|+++.|...... +. ..|... . .
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~--~~ad~l---~-~ 212 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV--VHADEL---E-E 212 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT--TCHHHH---H-H
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH--hCHhhH---H-H
Confidence 24677777777777777777777777 3566666666666666555555443332 11 232221 1 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 000173 1906 YLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1906 yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
.+.++.+.|..+++..+++.|+
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 3444455555555555555553
No 186
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=1.5e-06 Score=103.71 Aligned_cols=176 Identities=11% Similarity=-0.009 Sum_probs=138.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC
Q 000173 1681 SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP 1759 (1935)
Q Consensus 1681 ~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl-~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~ 1759 (1935)
.+|.....|...+..+...+++++|.+.++++++..+...+.... ..+..+..++...| ..+.|...|++|++....
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHTTCCC
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhc
Confidence 345666778888889999999999999999999765542222112 22333445556667 459999999999976432
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---cCCCH----HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1760 -------KKVHLALLGLYERTEQNKLADELLYKMIKK---FKHSC----KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1760 -------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~---~~~~~----~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
..+|..++.+|...+++++|.+.|+++++. .+... .+|++++..+... ++++|...|++|+...+
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999999954 44432 6899999999999 99999999999998754
Q ss_pred CC----ChHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 000173 1825 RH----KHIKFISQTAILEFKNGVADRG-RSMFEGILSE 1858 (1935)
Q Consensus 1825 ~~----~~~~~~~~~a~le~~~g~~e~A-r~ife~al~~ 1858 (1935)
.. ....+|...|.+++..|++++| ...|++++..
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 31 1257899999999999999999 8889999864
No 187
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.60 E-value=3.7e-07 Score=94.71 Aligned_cols=99 Identities=14% Similarity=-0.051 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++..+...+++++|...|++++...|.+..+|+.++.++... ++++|...|++++...|.. ..+|..+|.++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555544 5555555555555554443 34555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 000173 1840 FKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1840 ~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+..|++++|...|++++...|.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555554444
No 188
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=2.2e-07 Score=95.28 Aligned_cols=98 Identities=10% Similarity=-0.005 Sum_probs=49.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|+.++..+.+.|++++|...|+++++..|.+..+|+.++..+... ++++|...|++++...|.+ ..+|..+|.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD--IAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555555 5555555555555555544 3455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCC
Q 000173 1842 NGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
.|++++|...|+++++.+|..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 555555555555555555543
No 189
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3.5e-07 Score=95.84 Aligned_cols=112 Identities=11% Similarity=-0.074 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTA 1836 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a 1836 (1935)
..|..++..+...+++++|.+.|++++...+.+ ..+|+.++..+... ++++|...|+++++..|.. ..+|..+|
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a 106 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHHH
Confidence 666677777777777777777777777666655 67777777777777 7777777777777776655 46777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1837 ILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1837 ~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
.+++..|++++|...|++++..+|.+.++|..+..+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777777777777777777777777777766666543
No 190
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=8.7e-07 Score=88.41 Aligned_cols=113 Identities=11% Similarity=0.004 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLD 1871 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~ 1871 (1935)
....|+.++..+... ++++|...|++++...|.+ ..+|..+|.+++..|++++|...|++++...|.+..+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 456889999999999 9999999999999999876 6899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1872 QEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1872 ~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
.+...|+++.|+..|++++. ..|... ..|..+..++
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLK--HEANNP-QLKEGLQNME 116 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--TCTTCH-HHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH--cCCCCH-HHHHHHHHhh
Confidence 99999999999999999998 666666 4666655543
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.58 E-value=1e-07 Score=121.63 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---------------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---------------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
..|..++..|.+.+++++|...|++++...+.. ..+|++++.++++. ++++|...|++|+...|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 567777788888888888888888888887776 78999999999999 99999999999999998
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 000173 1825 RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR-GLFERAI 1890 (1935)
Q Consensus 1825 ~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar-~lferal 1890 (1935)
.+ +.+|..+|.+++..|++++|+..|+++++.+|.+..+|..++.++.+.++.+++. .+|.+++
T Consensus 349 ~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 AN--EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 6999999999999999999999999999999999999999999999988887654 4455444
No 192
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.58 E-value=8.3e-08 Score=104.89 Aligned_cols=72 Identities=21% Similarity=0.384 Sum_probs=66.1
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecC---------ceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEE
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENT---------NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~---------~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~l 1536 (1935)
.+ |++|.|+|++|.++|+||+|..- ++.|++|+|++++.+++++.+.|++||.|+|+|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 99999999999999999999751 68999999999999999999999999999999997 89999
Q ss_pred ecccccc
Q 000173 1537 GMKSSYF 1543 (1935)
Q Consensus 1537 slK~~~~ 1543 (1935)
|+|....
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9988544
No 193
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.58 E-value=6.2e-09 Score=139.57 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=0.8
Q ss_pred hhhccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc-cCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1371 EKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY-VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1371 ~~~~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~-~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
+.+.++++|++|.|+|++|+++|+||+|+.+++|+||+++|+|.| +.+|.+.|++||.|+|+|++||.++++|.||+|.
T Consensus 898 et~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~ 977 (1030)
T 3psf_A 898 ESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLD 977 (1030)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEech
Confidence 345789999999999999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred Ccc
Q 000173 1450 SDS 1452 (1935)
Q Consensus 1450 ~~~ 1452 (1935)
+..
T Consensus 978 ~dl 980 (1030)
T 3psf_A 978 HDV 980 (1030)
T ss_dssp ---
T ss_pred HHh
Confidence 654
No 194
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.57 E-value=9.4e-08 Score=94.02 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=67.4
Q ss_pred CCCCCEEEEEEEEE---eeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCc
Q 000173 1376 LSPNMIVQGYVKNV---TSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v---~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~ 1451 (1935)
...++.++|+|+.. ..+| ||.... +.++|||+++|.+...
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~----------------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA----------------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC-----------------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc-----------------------------------
Confidence 34677899999988 4478 887654 5999999999987521
Q ss_pred ccccccccccccCCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc
Q 000173 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV 1507 (1935)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~ 1507 (1935)
....+++|++|++.|+++.+||+||+|.+ +++||||+|+|+|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~-~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDG-GIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTS-CEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCC-CceEEEEHHHCccCcC
Confidence 02367899999999999999999999976 7999999999998865
No 195
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.57 E-value=1.3e-06 Score=88.74 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000173 1792 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1870 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya 1870 (1935)
.....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+..+|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 4567899999999999 9999999999999999876 689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCC
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGE 1915 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~ 1915 (1935)
.++...|+++.|...|++++. ..|... ..|..+.......|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~--~~p~~~-~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE--LDPDNE-TYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCccch-HHHHHHHHHHHHHhc
Confidence 999999999999999999999 666665 567777666665554
No 196
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.57 E-value=7.2e-07 Score=92.52 Aligned_cols=104 Identities=14% Similarity=0.076 Sum_probs=97.4
Q ss_pred cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1790 FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1790 ~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
.+.....|+.++..++.. ++++|...|++++...|.. ..+|..+|.+++..|++++|...|+++++.+|.+..+|..
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 356789999999999999 9999999999999999887 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCch
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~~~~pk 1897 (1935)
++..+...|+++.|...|++++. +.|.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~--~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS--LAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--HChh
Confidence 99999999999999999999998 5444
No 197
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.57 E-value=1e-07 Score=103.82 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=62.0
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCCEEEEEEEEEecCCC--
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1532 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~----------~~~~~~Gd~V~~~Il~id~~~~-- 1532 (1935)
...+|+++.|+|+++++||+||+|.+ .+||+|+|++++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~~~~Gev~~G~V~~v~~fG~FV~l~~--~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (171)
T 1y14_B 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (171)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETT--EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEE
T ss_pred cCCCCCEEEEEEEEEecCEEEEEecC--eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCc
Confidence 45699999999999999999999964 999999999986543111 2679999999999999998874
Q ss_pred -eeEEecccccc
Q 000173 1533 -RISLGMKSSYF 1543 (1935)
Q Consensus 1533 -ri~lslK~~~~ 1543 (1935)
+|. ||+..+.
T Consensus 158 ~~ig-sm~~~~L 168 (171)
T 1y14_B 158 HAIG-SIKEDYL 168 (171)
T ss_dssp EEEE-ECCSTTC
T ss_pred EEEE-EcCCCCC
Confidence 555 7766543
No 198
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.1e-07 Score=106.17 Aligned_cols=150 Identities=11% Similarity=-0.020 Sum_probs=116.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh--------------HHHH
Q 000173 1768 GLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH--------------IKFI 1832 (1935)
Q Consensus 1768 ~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~--------------~~~~ 1832 (1935)
......+.+++|.+.|.............|...+..++.. ++++|...|++++...|.... ..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344456666666666655544445677899999999999 999999999999999887641 3799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
..+|.+++..|++++|...|+++++..|.+..+|..++..+...|+++.|...|++++. +.|... .+|..+......
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 168 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL-DIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 666665 567666666655
Q ss_pred cCCHHHHH
Q 000173 1913 VGEEERIE 1920 (1935)
Q Consensus 1913 ~G~~e~a~ 1920 (1935)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 55544433
No 199
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=9.1e-08 Score=122.70 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=131.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK 1841 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~ 1841 (1935)
|..++..|.+.+++++|.+.|+++++..|....+|..++..+.+. ++++|.+.|++|++..|.. ..+|..+|.+++.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY--IKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Confidence 444556777889999999999999999999999999999999999 9999999999999998876 6899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCC------Cch--hHH
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQ--EIRLGDVDLIRGLFE-----------RAISLSL------PPK--KMK 1900 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~--e~k~g~~e~ar~lfe-----------ral~~~~------~pk--~~k 1900 (1935)
.|++++|...|+++++..|.+.++|..++.. +.+.|++++|..+|+ +++.... .+. -..
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl 166 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTI 166 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccH
Confidence 9999999999999999999998898888887 778899999999999 6665210 011 011
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHh
Q 000173 1901 FLFKKYLEYEKSVG--EEERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1901 ~l~~~yl~~E~~~G--~~e~a~~v~~rAle~v~~ 1932 (1935)
..+..++......+ ..+.+..++.+|.+.+..
T Consensus 167 ~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 167 SFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp HHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 34455555444433 467788899999888764
No 200
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=6.4e-07 Score=96.70 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000173 1792 HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYL 1870 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya 1870 (1935)
.....|+.++..++.. ++++|...|+++++..|.+ ..+|..+|.+++..|++++|...|++++..+|.+..+|..++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN--PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3567899999999999 9999999999999999887 689999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+...|++++|...|++++. +.|...
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~--~~p~~~ 113 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE--AEGNGG 113 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HHSSSC
T ss_pred HHHHHccCHHHHHHHHHHHHH--hCCCch
Confidence 999999999999999999998 555443
No 201
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=3e-06 Score=100.41 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=146.9
Q ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1671 a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
+...|++++...+.+...+...+..+...|++++|+.++.+++...+. ...+..+...+.++...| ..+.|++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~~~lea~~l~vqi~L~~~--r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA---EGTTELLLLAIEVALLNN--NVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS---TTHHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---cCcHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 678888888766666777788888888899999999999998754331 234567888888888999 569999999
Q ss_pred HHHHhcCC-----CHHHHHHHHHH--HHH--cCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHH
Q 000173 1751 QRALQYCD-----PKKVHLALLGL--YER--TEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRAL 1820 (1935)
Q Consensus 1751 erAl~~~~-----~~~v~~~l~~i--~~~--~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ral 1820 (1935)
+++.+..| ...+...++.. ... .+++.+|..+|+++...+|+.......|. .++.+ ++++|++.++.++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 99988887 34555555443 333 34899999999999988876223222233 56666 9999999999777
Q ss_pred HhCCC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1821 LSLPR--------HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1821 k~~p~--------~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..|. ..++.++.+.+.+....|+ .|..+++++.+..|++.-+- + +......|++++.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~----d-------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK----H-------HQEIDAKFDELVR 304 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH----H-------HHHHHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH----H-------HHHHHHHHHHHHH
Confidence 66432 2346888888888888887 88899999999999985442 2 2334456777765
No 202
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.54 E-value=1.8e-07 Score=103.65 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=69.7
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccC-----------CccccCCCCcEEEEEEEEEeCCCC--
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK-- 1441 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~-----------~~~~~f~~G~~V~~kVl~vd~~~~-- 1441 (1935)
...+|+++.|+|++++++|+||+|++ ++|++|++++++.++. ++.+.|++||.|+++|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p 156 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERK 156 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC---
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 35689999999999999999999985 9999999999988765 788899999999999999998755
Q ss_pred ---EEEEEEecCcccc
Q 000173 1442 ---RVEVTLKTSDSRT 1454 (1935)
Q Consensus 1442 ---ri~lSlk~~~~~~ 1454 (1935)
+|.||++.....+
T Consensus 157 ~~~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 157 RGSKIALTMRQPYLGK 172 (187)
T ss_dssp --CEEEEECCSTTCEE
T ss_pred CccEEEEEEcCCCCCc
Confidence 9999999865543
No 203
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=1.4e-06 Score=89.23 Aligned_cols=112 Identities=7% Similarity=0.091 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSC---KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAI 1837 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~---~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~ 1837 (1935)
++.++..+...+++++|.+.|+++++.+|.+. .+|+.++..+... ++++|...|+++++..|.+.. ..++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 55667777888888888888888888887776 7888888888888 888888888888888876632 367788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000173 1838 LEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEI 1874 (1935)
Q Consensus 1838 le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~ 1874 (1935)
+++..|++++|...|++++..+|.+...+.....+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 8888888888888888888888887776665555443
No 204
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.54 E-value=9.6e-08 Score=106.74 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=64.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCCEEEEEEEEEecCCC--
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEKR-- 1532 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~----------~~~~~~Gd~V~~~Il~id~~~~-- 1532 (1935)
..++|+++.|+|+++++||+||+|.+ ++||+|+|+|++.+.-+. .+.|++||.|+++|+++|.+.+
T Consensus 80 ~p~vGev~~G~V~~vt~fG~FVelg~--~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i 157 (215)
T 2b8k_G 80 KPFKGEVVDGTVVSCSQHGFEVQVGP--MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSI 157 (215)
T ss_dssp CCCTTEEEEEEEEEEETTEEEEECTT--SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEE
T ss_pred ccCCCCEEEEEEEEEecceEEEEecC--cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCcc
Confidence 45899999999999999999999964 899999999987644222 2679999999999999998875
Q ss_pred -eeEEeccccccC
Q 000173 1533 -RISLGMKSSYFK 1544 (1935)
Q Consensus 1533 -ri~lslK~~~~~ 1544 (1935)
+|. |||..+.+
T Consensus 158 ~~Ig-Smk~~~LG 169 (215)
T 2b8k_G 158 HAIG-SIKEDYLG 169 (215)
T ss_dssp EEEE-ECCSTTCE
T ss_pred EEEE-EcCCCCCC
Confidence 777 88876553
No 205
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=1.9e-06 Score=86.72 Aligned_cols=112 Identities=17% Similarity=0.212 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
...|+.++..+... ++++|.+.|++++...|.. ..+|..+|..++..|++++|..+|++++...|.+..+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 67899999999999 9999999999999998876 58999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+...|++++|..+|++++. ..|... ..+..+....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALE--LDPNNA-EAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHH--hCCCcH-HHHHHHHHHH
Confidence 9999999999999999998 556555 3444444433
No 206
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=1.9e-06 Score=102.72 Aligned_cols=155 Identities=7% Similarity=-0.064 Sum_probs=72.2
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHH
Q 000173 1735 ENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRV 1801 (1935)
Q Consensus 1735 e~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~ 1801 (1935)
....+ ..+.|...|+++++..+.. ..+..++.+|...+++++|.+.|++++...... ..+|..++
T Consensus 85 ~~~~~--~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 85 LCKQK--RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHTT--CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHh--hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34445 2355555555555543321 112224444444455555555555555532111 22445555
Q ss_pred HHHHHc-CHHHHHHHHHHHHHhCC---CC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 000173 1802 QRLLKQ-QQEGVQAVVQRALLSLP---RH--KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLWSIY 1869 (1935)
Q Consensus 1802 ~~l~~~-~~e~A~~ll~ralk~~p---~~--~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw~~y 1869 (1935)
.++... ++++|...|++|++... .. ....++..+|.+++..|++++|...|++++...+.. ..+|...
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 555555 55555555555553211 11 112345555555555555555555555555443221 3445555
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHh
Q 000173 1870 LDQEIRLGD-VDLIRGLFERAIS 1891 (1935)
Q Consensus 1870 a~~e~k~g~-~e~ar~lferal~ 1891 (1935)
+..+.+.|+ +++|...|++|+.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHH
Confidence 555555552 3555555555544
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.52 E-value=2.2e-06 Score=98.99 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN-----GVADRGRSMFEGILSEYPKR-TDLWSIYLDQEIRL-GDVD 1880 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~-----g~~e~Ar~ife~al~~~Pk~-~dlw~~ya~~e~k~-g~~e 1880 (1935)
....|+..++||++..|...+-.+|..+|.+|... |+.++|+++|+++|+.+|.. .+.+..|+++++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 47889999999999999965568999999999984 99999999999999999974 99999999999885 9999
Q ss_pred HHHHHHHHHHhcCCCch
Q 000173 1881 LIRGLFERAISLSLPPK 1897 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk 1897 (1935)
.++.+|++|+. .+|.
T Consensus 258 ~a~~~L~kAL~--a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALA--IDPE 272 (301)
T ss_dssp HHHHHHHHHHH--CCGG
T ss_pred HHHHHHHHHHc--CCCC
Confidence 99999999999 6655
No 208
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=1.2e-06 Score=90.59 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-----HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-----IKFISQ 1834 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-----~~~~~~ 1834 (1935)
..|..+++.|.+.+++++|.+.|++++...|....+|.+++..++.. ++++|.+.|++|++..|.... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667777888888888888888888888888888888888888888 888888888888877655321 246777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
.|.++...|++++|...|+++|...|+ .++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 777777888888888888888877765 344433
No 209
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.51 E-value=1.1e-07 Score=121.36 Aligned_cols=148 Identities=9% Similarity=-0.001 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-------------HHHHHHHHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-------------IKFISQTAILEFK 1841 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-------------~~~~~~~a~le~~ 1841 (1935)
+++|.+.|+.++...+.....|..++..+++. ++++|...|++|++..|.... ..+|..+|.++++
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555545556778899999999999 999999999999999988731 5899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH-
Q 000173 1842 NGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIE- 1920 (1935)
Q Consensus 1842 ~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~- 1920 (1935)
.|++++|...|++++..+|++..+|+.++..+...|++++|+..|++|+. +.|... ..|..+.......|+.+.+.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~-~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK-AARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 777776 56777777777777665543
Q ss_pred HHHHHH
Q 000173 1921 YVKQKA 1926 (1935)
Q Consensus 1921 ~v~~rA 1926 (1935)
.+|.++
T Consensus 407 ~~~~~~ 412 (457)
T 1kt0_A 407 RIYANM 412 (457)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 210
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=8.4e-07 Score=92.90 Aligned_cols=119 Identities=15% Similarity=0.072 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSI 1868 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ 1868 (1935)
+.....|+..+..++.. ++++|...|++++...|... ...+|..+|..++..|++++|...|++++..+|.+..+|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 56789999999999999 99999999999999988641 15899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
++..+...|++++|...|++++. +.|... .+|..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~-~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS--LEPKNK-VFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSCH-HHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--cCCCcH-HHHHHHHHHHhh
Confidence 99999999999999999999999 666666 577766666543
No 211
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1.5e-06 Score=103.65 Aligned_cols=167 Identities=11% Similarity=0.030 Sum_probs=130.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHH
Q 000173 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVA-YFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKV 1762 (1935)
Q Consensus 1691 ~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~a-yl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v 1762 (1935)
..+..+...+++++|...++++++..+...+......|.. +..++...+ ..+.|...|++|++.... ..+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--DYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3466778999999999999999975544333222233443 455555556 459999999999986432 157
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC----hHH
Q 000173 1763 HLALLGLYERTEQNKLADELLYKMIKKFK-------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIK 1830 (1935)
Q Consensus 1763 ~~~l~~i~~~~~~~~~A~el~~~~~k~~~-------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~----~~~ 1830 (1935)
|..++.+|...|++++|.+.|+++++.+. ....+|++++..+... ++++|...|++|+...+... ...
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999996442 2356889999999999 99999999999998764431 257
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 000173 1831 FISQTAILEFKNGV-ADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~-~e~Ar~ife~al~~~ 1859 (1935)
+|...|..++..|+ +++|...|++++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999994 699999999998653
No 212
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=6.7e-07 Score=91.68 Aligned_cols=100 Identities=7% Similarity=-0.034 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e 1873 (1935)
..|+..+..+++. ++++|...|+++++..|.+ ..+|..+|.++...|++++|...|+++++.+|.+...|..++..+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3578889999999 9999999999999999987 699999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1874 IRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
...|++++|+..|++++. ..|..
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL--SQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-------
T ss_pred HHcCCHHHHHHHHHHHHH--hCcCC
Confidence 999999999999999998 65543
No 213
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.50 E-value=1.3e-08 Score=131.63 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|+|++|.++|+||+|.++++|+||+++++|.++.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~ 711 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLSMKVVDQE 711 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECC-CCcEEEEEeecccC
Confidence 57899999999999999999999999999999999999999999999999999999999999997 89999999998766
Q ss_pred cc
Q 000173 1454 TA 1455 (1935)
Q Consensus 1454 ~~ 1455 (1935)
++
T Consensus 712 ~G 713 (726)
T 4aid_A 712 TG 713 (726)
T ss_dssp --
T ss_pred cc
Confidence 54
No 214
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.50 E-value=8e-07 Score=95.73 Aligned_cols=113 Identities=10% Similarity=-0.044 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKK------------------FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~------------------~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
..|...++.+.+.+++++|...|.+++.. .+....+|++++.+++.. ++++|...|++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 55677777888888888888888888877 455667888888888888 88888888888888
Q ss_pred hCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000173 1822 SLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1875 (1935)
Q Consensus 1822 ~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k 1875 (1935)
..|.+ +.+|...|..++..|++++|...|++++..+|.+. .++..+..+..+
T Consensus 92 ~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 92 REETN--EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred cCCcc--hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 88776 58888888888888888888888888888888887 556555555443
No 215
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=1.1e-06 Score=89.43 Aligned_cols=114 Identities=10% Similarity=-0.015 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-h----HHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-H----IKFISQ 1834 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-~----~~~~~~ 1834 (1935)
..|..++.++...+++++|...|++++...+.+..+|+.++..+... ++++|...|++++...|... . ..+|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 46777777888888888888888888888777888888888888777 88888888888887765431 1 467778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIR 1875 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k 1875 (1935)
+|..++..|++++|...|++++...| +.++|..+..+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 88888888888888888888888777 46666666665543
No 216
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.49 E-value=1.8e-07 Score=102.05 Aligned_cols=76 Identities=16% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccC------------cccccCCCCEEEEEEEEEecCCC
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN------------IETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~------------~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
...+|+++.|+|+++++||+||+|. .++||+|+|++++.+.-+ ....|++||.|+++|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~fG~fV~l~--~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (172)
T 2c35_B 78 RPFKGEVVDAVVTQVNKVGLFTEIG--PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKN 155 (172)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEET--TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETT
T ss_pred eCCCCCEEEEEEEEEeCCEEEEEEC--CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCC
Confidence 3469999999999999999999995 477999999998653311 14579999999999999998866
Q ss_pred ---eeEEecccccc
Q 000173 1533 ---RISLGMKSSYF 1543 (1935)
Q Consensus 1533 ---ri~lslK~~~~ 1543 (1935)
+|. |||..+.
T Consensus 156 ~~~~ig-sm~~~~L 168 (172)
T 2c35_B 156 DIFAIG-SLMDDYL 168 (172)
T ss_dssp EEEEEE-ECCSTTC
T ss_pred CcEEEE-EecCCCC
Confidence 666 8877544
No 217
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=1.4e-07 Score=115.29 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
...|..+.+.+...+++ +.|...|++|++..|....|.. .+++.++...+ ...+|++++.++
T Consensus 179 a~~~~~~g~~~~~~g~~--~~A~~~y~~Al~~~p~~~~~~~-------~~~~~~~~~~l---------~~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKL--EEAMQQYEMAIAYMGDDFMFQL-------YGKYQDMALAV---------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCC--HHHHHHHHHHHHHSCHHHHHTC-------CHHHHHHHHHH---------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhccchhhhh-------cccHHHHHHHH---------HHHHHHHHHHHH
Confidence 46788888888888866 9999999999999886543221 22223332222 124889999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQE-IRLGDVDLI 1882 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e-~k~g~~e~a 1882 (1935)
+.. ++++|...|+++++..|.+ ..+|..+|..++..|++++|+..|+++++..|.+..+|..+..+. ...+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKN--PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 988 9999999999999998876 689999999999999999999999999999999999998888874 455677888
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
+.+|.+++.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 899999887
No 218
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.47 E-value=2.1e-07 Score=103.99 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=71.2
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeC--------CCcEEEEECccCCCcccC--CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLS--------RKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~--------~~v~g~V~~s~lsd~~~~--~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
.+++|++|.|+|++++++|+||+|+ .+.+|+||++++++.+.. ++.+.|++||.|.++|++++..++++.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 4789999999999999999999974 578999999999999888 899999999999999999997778999
Q ss_pred EEEecCcc
Q 000173 1445 VTLKTSDS 1452 (1935)
Q Consensus 1445 lSlk~~~~ 1452 (1935)
||+|....
T Consensus 158 LS~k~~~l 165 (209)
T 2nn6_I 158 LTTAENEL 165 (209)
T ss_dssp EECCSSSC
T ss_pred EEEecCCC
Confidence 99988654
No 219
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.47 E-value=1.5e-07 Score=107.45 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=68.5
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc----cccCcccccCCCCEEEEEEEEEecCCCeeEEeccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~----~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~ 1540 (1935)
..++||+|.|+|+++.++|+||.|.. ..+|++|+|++++. +..++.+.|++||.|.|+|++++. .+++.||+|.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~-~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINS-PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEec
Confidence 57999999999999999999999975 79999999999863 456788999999999999999994 5699999987
Q ss_pred ccc
Q 000173 1541 SYF 1543 (1935)
Q Consensus 1541 ~~~ 1543 (1935)
..+
T Consensus 141 ~~l 143 (235)
T 2z0s_A 141 EGL 143 (235)
T ss_dssp SSC
T ss_pred ccC
Confidence 655
No 220
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.45 E-value=2.2e-08 Score=130.50 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecCccc
Q 000173 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1374 ~~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~~~~ 1453 (1935)
.++++|+++.|+|+++.++|+||+|.++++|+||+++++|.|+.++.+.|++||.|+++|+++|+ ++||.||+|.....
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~ 701 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQ 701 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCC
Confidence 46889999999999999999999999999999999999999999999999999999999999997 99999999988766
Q ss_pred cccc
Q 000173 1454 TASQ 1457 (1935)
Q Consensus 1454 ~~~~ 1457 (1935)
++.+
T Consensus 702 ~g~~ 705 (723)
T 3cdi_A 702 SQPA 705 (723)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 221
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.44 E-value=1e-06 Score=108.94 Aligned_cols=138 Identities=14% Similarity=-0.020 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRL 1804 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l 1804 (1935)
...|..+.+.+...++ .+.|...|++|+++.+... +...++.+.+..+....+|++++..+
T Consensus 223 a~~~~~~g~~~~~~g~--~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQN--WEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888884 4888888888886543211 01112223334455678899999999
Q ss_pred HHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1805 LKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1805 ~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
++. ++++|...|++|++..|.+ ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++.++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSN--TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 988 9999999999999988876 6899999999999999999999999999999999999999988888877766654
No 222
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.41 E-value=5.9e-07 Score=98.81 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc-----------CCccccCCCCcEEEEEEEEEeCC----
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-----------ESPEKEFPIGKLVAGRVLSVEPL---- 1439 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~-----------~~~~~~f~~G~~V~~kVl~vd~~---- 1439 (1935)
...+|+++.|.|++++++|+||+++ .++|++|+++++++|. ++....|++||.|+++|+++|.+
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~ 156 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGR 156 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-----
T ss_pred eccCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcc
Confidence 3568999999999999999999998 5899999999999876 46778899999999999999864
Q ss_pred CCEEEEEEecCccc
Q 000173 1440 SKRVEVTLKTSDSR 1453 (1935)
Q Consensus 1440 ~~ri~lSlk~~~~~ 1453 (1935)
..||.||+|+.-..
T Consensus 157 ~~rI~ls~k~~gLG 170 (180)
T 4ayb_E 157 LPRIALTMRQPYLG 170 (180)
T ss_dssp --CEEEECCSTTCE
T ss_pred cCcEEEEcCCCCCC
Confidence 45899999986543
No 223
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.39 E-value=1.1e-06 Score=86.97 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--RTDLWS 1867 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~~dlw~ 1867 (1935)
|....+|+.++..+... ++++|...|+++++..|.. ..+|..+|.+++..|++++|...|+++++..|. +..+|.
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 34445556666666655 6666666666666666554 356666666666666666666666666666666 666666
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHh
Q 000173 1868 IYLDQEIRL-GDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1868 ~ya~~e~k~-g~~e~ar~lferal~ 1891 (1935)
.++..+... |++++|...|++++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666666666 666666666666665
No 224
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=4.3e-06 Score=109.15 Aligned_cols=163 Identities=11% Similarity=0.025 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C
Q 000173 1743 EEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQ----------NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---Q 1808 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~----------~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~---~ 1808 (1935)
.++|.+.+++|++.+|.. ++|.....++...++ +++|.+.|.++++.+|.+..+|...+-.+.+. +
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 478999999999999985 999999999998888 99999999999999999999999999877776 5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG-VADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL----------- 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g-~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~----------- 1876 (1935)
+++|.+.+.+|++..|.+ ..+|...+.+....| .++++.+.++++++.+|.+..+|.....+..+.
T Consensus 125 ~~~el~~~~k~l~~d~~N--~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADERN--FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhcccc--ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 699999999999999988 479999999999999 899999999999999999999999988887774
Q ss_pred ---CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1877 ---GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1877 ---g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+.++++..++.+|+. ..|... ..|.-+.-+.
T Consensus 203 ~~~~~~~eel~~~~~ai~--~~P~~~-saW~y~~~ll 236 (567)
T 1dce_A 203 LPENVLLKELELVQNAFF--TDPNDQ-SAWFYHRWLL 236 (567)
T ss_dssp SCHHHHHHHHHHHHHHHH--HCSSCS-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--hCCCCc-cHHHHHHHHH
Confidence 456889999999998 666655 4555443333
No 225
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.36 E-value=4.3e-07 Score=104.24 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=70.2
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc---cCcccccCCCCEEEEEEEEEecCCCeeEEecccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV---DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~---~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~ 1541 (1935)
..++||+|.|+|+++.++|+||.|.. ...|++|+|++++.+. .++.+.|++||.|.|+|++++. .+++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~-~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKA-PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCC-CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 46899999999999999999999975 7999999999998777 7788999999999999999995 57999999886
Q ss_pred ccC
Q 000173 1542 YFK 1544 (1935)
Q Consensus 1542 ~~~ 1544 (1935)
.++
T Consensus 149 ~lG 151 (251)
T 2je6_I 149 DLG 151 (251)
T ss_dssp TCE
T ss_pred cCC
Confidence 553
No 226
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.36 E-value=6.3e-07 Score=109.51 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
.+|+.++.+|.+.+++++|...|++++...|.+..+|++++..++.. ++++|+..|+++++..|.+ ..++..++.+.
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999 9999999999999999887 47888888884
Q ss_pred -HHcCCHHHHHHHHHHHHHhCCCCH
Q 000173 1840 -FKNGVADRGRSMFEGILSEYPKRT 1863 (1935)
Q Consensus 1840 -~~~g~~e~Ar~ife~al~~~Pk~~ 1863 (1935)
...+..++++.+|.+++...|.+.
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 456788999999999999988754
No 227
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=1.8e-06 Score=85.25 Aligned_cols=102 Identities=12% Similarity=-0.051 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.++...+++++|...|+++++..+....+|+.++..+... ++++|...|+++++..|...+..+|..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 99999999999999998822368999999999
Q ss_pred HHc-CCHHHHHHHHHHHHHhCCCC
Q 000173 1840 FKN-GVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1840 ~~~-g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
+.. |++++|...|++++...|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 99999999999999999874
No 228
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.35 E-value=5e-06 Score=108.53 Aligned_cols=173 Identities=12% Similarity=0.046 Sum_probs=142.1
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENE 1737 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e----------~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~ 1737 (1935)
.++|...|++++..+|++..+|..-.......++ +++|.+.+++|++..|-. ..+|.....+...
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~-----y~aW~hR~w~l~~ 119 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-----YGTWHHRCWLLSR 119 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Confidence 6778899999999999999999998888877776 899999999999765532 4689888888788
Q ss_pred cCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------
Q 000173 1738 YGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTE-QNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-------- 1807 (1935)
Q Consensus 1738 ~g~~~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~-~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-------- 1807 (1935)
++.+..+++.+.+++|++..+. ...|....-++...+ .++++.+.+.++++..+.+..+|...+..+...
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 8832338888999999998876 488888888888888 888999999999988889999998888877662
Q ss_pred -------CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH
Q 000173 1808 -------QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR 1847 (1935)
Q Consensus 1808 -------~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~ 1847 (1935)
.+++|.+++.+|+...|.+. .+|..+..++.+.+.+++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHHHhcCCCccc
Confidence 46888888889998888885 788888887777776554
No 229
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.35 E-value=6.7e-07 Score=99.96 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=64.8
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCcc----------ccCCCCcEEEEEEEEEeCCCC---E
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK---R 1442 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~----------~~f~~G~~V~~kVl~vd~~~~---r 1442 (1935)
.++|+++.|.|++|+++|+||+|++ .+|+||+++|++.|.-++. +.|++||.|+++|+++|.+.+ +
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 4689999999999999999999998 9999999999987765543 569999999999999998765 6
Q ss_pred EEEEEecCcccc
Q 000173 1443 VEVTLKTSDSRT 1454 (1935)
Q Consensus 1443 i~lSlk~~~~~~ 1454 (1935)
+. |+++.-..+
T Consensus 160 Ig-Smk~~~LG~ 170 (215)
T 2b8k_G 160 IG-SIKEDYLGA 170 (215)
T ss_dssp EE-ECCSTTCEE
T ss_pred EE-EcCCCCCCC
Confidence 66 776654433
No 230
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.35 E-value=2e-07 Score=101.43 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCc----------ccccCCCCEEEEEEEEEecCC--
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI----------ETIYRAGEKVKVKILKVDKEK-- 1531 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~----------~~~~~~Gd~V~~~Il~id~~~-- 1531 (1935)
....+|+++.|+|+++++||+||+|+ .++||+|+|++++.+.-|. ...|++||.|+++|+++|.+.
T Consensus 80 f~p~~Gev~~G~V~~v~~fG~FV~l~--~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANIG--PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCBT--TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSC
T ss_pred eccCCCCEEEEEEEEEEcceEEEEeC--CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCC
Confidence 35678999999999999999999996 4789999999987644332 468999999999999999887
Q ss_pred -CeeEEecccccc
Q 000173 1532 -RRISLGMKSSYF 1543 (1935)
Q Consensus 1532 -~ri~lslK~~~~ 1543 (1935)
.+|. |||..|.
T Consensus 158 ~~~Ig-tm~~~~L 169 (172)
T 3h0g_G 158 IFAIA-TMKEDYL 169 (172)
T ss_dssp EEEEE-ECCSTTC
T ss_pred ceEEE-EcCCCCC
Confidence 4666 7776554
No 231
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=6.2e-06 Score=91.47 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHH
Q 000173 1742 PEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQ 1813 (1935)
Q Consensus 1742 ~~e~a~~vferAl~~~~~-~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~ 1813 (1935)
..+.|++.++........ ..+|..++.+|...+++++|.+.|++++..+. ....+|..++..+... ++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 347777755554442222 38888889999999999999999999888542 3456788888888888 999999
Q ss_pred HHHHHHHHh---CCCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHH
Q 000173 1814 AVVQRALLS---LPRH--KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK--R----TDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1814 ~ll~ralk~---~p~~--~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk--~----~dlw~~ya~~e~k~g~~e~a 1882 (1935)
..|++++.. .+.. ....++..+|.+++..|++++|...|++++...+. + ..++..++..+...|++++|
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999998887 4322 22467888888888899999999999998865432 1 22457778888888999999
Q ss_pred HHHHHHHHh
Q 000173 1883 RGLFERAIS 1891 (1935)
Q Consensus 1883 r~lferal~ 1891 (1935)
+..|++++.
T Consensus 167 ~~~~~~al~ 175 (203)
T 3gw4_A 167 QQHWLRARD 175 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888887
No 232
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.34 E-value=6.4e-07 Score=110.58 Aligned_cols=219 Identities=9% Similarity=0.003 Sum_probs=117.4
Q ss_pred CCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000173 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1935)
Q Consensus 1668 ~~~a~~~ferll~~~P~s~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~ 1747 (1935)
..+++..|+.+....|+ +.+...++..+.+.|+++++.+++.. |. ...|...+......|.+ ++|+
T Consensus 77 ~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn------~~a~~~IGd~~~~~g~y--eeA~ 142 (449)
T 1b89_A 77 WEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PN------NAHIQQVGDRCYDEKMY--DAAK 142 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-----C----------------------CT--TTHH
T ss_pred HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----Cc------HHHHHHHHHHHHHcCCH--HHHH
Confidence 33444544544443333 55566666666677777776666532 11 12677777777777755 7777
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1748 ~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
..|.++ .-|..++.++.+.|++++|.+.|.++ .++.+|...+..+... +++.|...... +..
T Consensus 143 ~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---- 205 (449)
T 1b89_A 143 LLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVV---- 205 (449)
T ss_dssp HHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTT----
T ss_pred HHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHh----
Confidence 777776 46778888888888888888888877 3778888887777777 88887554443 112
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCc-----hhH
Q 000173 1827 KHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRL--GDVDLIRGLFERAISLSLPP-----KKM 1899 (1935)
Q Consensus 1827 ~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~--g~~e~ar~lferal~~~~~p-----k~~ 1899 (1935)
|+.-....+.++.+.|.+++|..+|+.+|...+....+|..++.++.+. +...+...+|...++ .++ .++
T Consensus 206 -~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~~~~~ 282 (449)
T 1b89_A 206 -HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQA 282 (449)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHHHHTT
T ss_pred -CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 2333445667777888888888888888888888888888887777765 344445555555444 444 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEY 1921 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~ 1921 (1935)
.+|..+.-+...+++++.|..
T Consensus 283 -~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 283 -HLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp -TCHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHhhchHHHHHH
Confidence 578888877777777776543
No 233
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=5.9e-06 Score=91.63 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=111.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC----ChHHHHHHHHHHHHHcCCHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH----KHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~----~~~~~~~~~a~le~~~g~~e 1846 (1935)
..|++++|.+.++.+.........+|..++..+... ++++|...|++++...... ....++...|.++...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 467888888855444433335677888888888888 8888888888888754322 12467888888888888888
Q ss_pred HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CchhHHHHHHHHHHHHHHcCCH
Q 000173 1847 RGRSMFEGILSE---YPKR----TDLWSIYLDQEIRLGDVDLIRGLFERAISLS--L-PPKKMKFLFKKYLEYEKSVGEE 1916 (1935)
Q Consensus 1847 ~Ar~ife~al~~---~Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~~~--~-~pk~~k~l~~~yl~~E~~~G~~ 1916 (1935)
+|...|++++.. .|.+ ..++..++..+...|++++|+..|++++... . .+...-..+..........|+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888888888877 4432 3457778888888888888888888888521 1 1111112345556667778888
Q ss_pred HHHHHHHHHHHHHHHh
Q 000173 1917 ERIEYVKQKAMEYVES 1932 (1935)
Q Consensus 1917 e~a~~v~~rAle~v~~ 1932 (1935)
+.|...+++|++..+.
T Consensus 164 ~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 164 LEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887664
No 234
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.34 E-value=5.5e-07 Score=98.39 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC----------CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR----------KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~----------~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.+ |++|.|+|++|.++|+||+|.. +.+|++|++++++.++.++.+.|++||.|.++|++ +++.|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 46 9999999999999999999987 89999999999999999999999999999999997 78999
Q ss_pred EEecCcc
Q 000173 1446 TLKTSDS 1452 (1935)
Q Consensus 1446 Slk~~~~ 1452 (1935)
|+|....
T Consensus 130 S~k~~~l 136 (179)
T 3m7n_A 130 STKEEEM 136 (179)
T ss_dssp ECCSTTC
T ss_pred EEecCCC
Confidence 9987543
No 235
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.34 E-value=8.1e-07 Score=96.68 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=56.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCcc----------ccCCCCcEEEEEEEEEeCCCC
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPE----------KEFPIGKLVAGRVLSVEPLSK 1441 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~----------~~f~~G~~V~~kVl~vd~~~~ 1441 (1935)
..+|+++.|.|++++++|+||+|++ .+|+||+++|++.|.-++. +.|++||.|+++|+++|.+.+
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~ 155 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVS 155 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETT
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCC
Confidence 4589999999999999999999998 9999999999887653332 669999999999999997664
No 236
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=8.6e-06 Score=83.25 Aligned_cols=102 Identities=10% Similarity=0.011 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 000173 1796 VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH-IKFISQTAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYL 1870 (1935)
Q Consensus 1796 vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~-~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya 1870 (1935)
.|+..+..++.. ++++|...|+++++..|.+.. ..+|..+|..++..|++++|...|++++..+|++ .++|..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467888888888 999999999999999987631 2699999999999999999999999999999999 88899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1871 DQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1871 ~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
..+...|+++.|+..|++++. ..|...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~--~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT--QYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCCh
Confidence 999999999999999999998 555544
No 237
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.33 E-value=5.5e-07 Score=102.85 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=67.9
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCC----cccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEecC
Q 000173 1375 DLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1935)
Q Consensus 1375 ~lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd----~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~~ 1450 (1935)
..++||+|.|+|+++.++|+||+|+...+|++|++++++ .+..++.+.|++||.|.|+|++++. ++++.||+|..
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~~~i~LS~k~~ 141 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-TRSPLLTVQGE 141 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-TSCEEEECCSS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-CCcEEEEEecc
Confidence 368999999999999999999999999999999999987 3678899999999999999999995 56899998753
No 238
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=5.3e-06 Score=85.69 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-------TD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-------~d 1864 (1935)
....|..+|..++++ ++++|.+.|++|+...|.. +.+|...|.+++..|++++|...|++++...|+. ..
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 455788899999999 9999999999999999987 6899999999999999999999999999987764 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~~ 1892 (1935)
+|...+..+...|+++.|...|++++..
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777888888999999999999999983
No 239
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=6.3e-06 Score=88.59 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC--------CC--------CChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--------PR--------HKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~--------p~--------~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
....|...+..++.. ++++|...|.+|+..+ |. .....+|...|..++..|++++|...|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 356788889999999 9999999999999982 21 123589999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1856 LSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1856 l~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
+..+|.+...|+.++..+...|+++.|...|++++. +.|.....++..+....
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 77776634444444433
No 240
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=3.8e-06 Score=88.61 Aligned_cols=131 Identities=9% Similarity=-0.124 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----H
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHS------CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----I 1829 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~------~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~ 1829 (1935)
.+|..++.+|...+++++|.+.|++++..++.. ..+|..++..+... ++++|...|++++...+.... .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 345555555556666666666666555543211 12455555555555 555555555555554332211 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEYPK------RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk------~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
.++..+|.+++..|++++|...|++++...+. ...++..++..+...|++++|...|++++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45556666666666666666666666654321 123455556666666666666666666654
No 241
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.29 E-value=4.4e-06 Score=84.92 Aligned_cols=111 Identities=10% Similarity=0.070 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-------TD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-------~d 1864 (1935)
....|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|++++...|.+ ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 356889999999999 9999999999999999876 6899999999999999999999999999998876 88
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1865 LWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1865 lw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+|..++..+...|+++.|...|++++. ..|. . ..+..+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~-~-~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA--EHRT-P-DVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCC-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC-H-HHHHHHHHH
Confidence 999999999999999999999999999 4443 2 344444433
No 242
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.29 E-value=1.3e-06 Score=99.06 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=69.1
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEecccccc
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~-~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lslK~~~~ 1543 (1935)
..++||+|.|+|+.+.++|+||.|+. ...|++|+|++++. ...+..+.|++||.|.|+|++++. .+++.||+|...+
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~-~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~~~l 131 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYS-PYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKDRIC 131 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSS-SSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCSSSC
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCC-CeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEccccC
Confidence 46999999999999999999999964 68999999999964 667899999999999999999995 5899999988655
No 243
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=1.4e-06 Score=88.41 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000173 1774 EQNKLADELLYKMIKK---FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~---~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1849 (1935)
|++++|...|+++++. .|....+|+.++..+... ++++|...|+++++..|.+ ..+|..+|..++..|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHcCCHHHHH
Confidence 4455555555555554 344555555555555555 5555555556655555554 355555566666666666666
Q ss_pred HHHHHHHHhCCCCHHHH
Q 000173 1850 SMFEGILSEYPKRTDLW 1866 (1935)
Q Consensus 1850 ~ife~al~~~Pk~~dlw 1866 (1935)
..|++++...|.+.+++
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 66666666555555543
No 244
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.25 E-value=1.6e-06 Score=94.55 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=59.7
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCc------------ccCccCCCEEEEEEEEeeCCCC---
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL------------SKTYYVGQSVRSNILDVNSETG--- 824 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~------------~~~f~~Gq~V~~~V~~vd~e~~--- 824 (1935)
.+|+++.|.|++++++|+||++ +.+.||+|.|++++.+.-++ ...|++||.|+++|+++|.+.+
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~ 158 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIF 158 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCcE
Confidence 4899999999999999999999 57889999999986544322 4469999999999999998766
Q ss_pred eEEEeeccc
Q 000173 825 RITLSLKQS 833 (1935)
Q Consensus 825 rl~LSlk~~ 833 (1935)
++. ||++.
T Consensus 159 ~ig-sm~~~ 166 (172)
T 2c35_B 159 AIG-SLMDD 166 (172)
T ss_dssp EEE-ECCST
T ss_pred EEE-EecCC
Confidence 444 77654
No 245
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.22 E-value=7.1e-06 Score=87.34 Aligned_cols=101 Identities=10% Similarity=-0.039 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHc-CHHHHHHHHHHHHHh------
Q 000173 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKH-------SCK-----VWLRRVQRLLKQ-QQEGVQAVVQRALLS------ 1822 (1935)
Q Consensus 1762 v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~-------~~~-----vw~~~~~~l~~~-~~e~A~~ll~ralk~------ 1822 (1935)
.|...++.+...|++++|.+.|.+++...|. ... +|.+.+..+... ++++|...|.+||..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4445555555555555555555555555544 222 555555555555 555555555555555
Q ss_pred -CCCCChHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1823 -LPRHKHIKFI----SQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1823 -~p~~~~~~~~----~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
.|.. ..+| ...|..+...|++++|...|++++...|.+..
T Consensus 93 ~~pd~--~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 93 LNQDE--GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp TTSTH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred CCCch--HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 5433 3455 55555555555555555555555555554433
No 246
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.21 E-value=5e-05 Score=97.51 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhc-CCCH
Q 000173 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVHLALLGLYERTEQ---------NKLADELLYKMIKKF-KHSC 1794 (1935)
Q Consensus 1727 lW~ayl~le~~~g~~~~e~a~~vferAl~~--~~~~~v~~~l~~i~~~~~~---------~~~A~el~~~~~k~~-~~~~ 1794 (1935)
++...++..-+.| ..++|.++|+++.+. .|+...|..++..+.+.+. .++|.++|++|...- ..+.
T Consensus 28 ~l~~~id~c~k~G--~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKG--DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSC--CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 3444555555556 446666666666654 2344566666666554433 456666666665542 3455
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEY-PKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-Pk~~dlw~~ya~~ 1872 (1935)
..|..++..+.+. ++++|.++|+++.+.--. .....|..+...+.+.|+.++|..+|+.....- .-+...|..++..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 6666666666666 666666666666554211 123556666666666666666666666665542 2234556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1873 EIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1873 e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+.+.|+.++|..+|++.-+....|... .|...+.+
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~--T~~~l~~~ 219 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKS--TFDMIEEW 219 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHH--HHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHH--HHHHHHHH
Confidence 666666666666666666544555433 34444443
No 247
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.9e-05 Score=99.24 Aligned_cols=199 Identities=9% Similarity=-0.015 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 000173 1691 KYMAFMLSMADVEKARSIAERALQTINIREEN------------EKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD 1758 (1935)
Q Consensus 1691 ~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~------------Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~ 1758 (1935)
.-+.-..+.|++++|.+.|.++++..+...+. +.-..+..++.++...|+ .++|.+.|+++++..+
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 33455567789999999999999754432210 011234455566666663 3667777776665533
Q ss_pred C--H-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC
Q 000173 1759 P--K-----KVHLALLGLYERTEQNKLADELLYKMIKKFK------HSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP 1824 (1935)
Q Consensus 1759 ~--~-----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p 1824 (1935)
. . .++..+..++...++++.|.++++.++...+ ....++..++..+... ++++|..++++++....
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 2 1 3344444455556666777777666665432 2245666666666666 67777766666665432
Q ss_pred C----CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1825 R----HKHIKFISQTAILEFKNGVADRGRSMFEGILSEY---PKR----TDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1825 ~----~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~---Pk~----~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
. ...+.++...++++...|++++|+.+|++++... +.. ..+|..++.++...++++.|...|..++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 1224566666666666677777777776666543 221 12345555555566666666666666654
No 248
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=6.2e-06 Score=101.91 Aligned_cols=138 Identities=10% Similarity=0.048 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL 1838 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l 1838 (1935)
...|..++..|.+.+++++|.+.|+++++..+... .. .. +.+.+..|. ...+|..+|.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~-------~~~~~~~~~--~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAED-------ADGAKLQPV--ALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCH-------HHHGGGHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccCh-------HHHHHHHHH--HHHHHHHHHHH
Confidence 47788999999999999999999999987542111 01 21 222222222 25899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000173 1839 EFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEER 1918 (1935)
Q Consensus 1839 e~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~ 1918 (1935)
+++.|++++|...|+++++.+|.+..+|+.++..+...|++++|...|++|+. +.|... .+|..+.......++.+.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~-~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDK-AIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 666666 577777777766666555
Q ss_pred HH
Q 000173 1919 IE 1920 (1935)
Q Consensus 1919 a~ 1920 (1935)
++
T Consensus 360 a~ 361 (370)
T 1ihg_A 360 KE 361 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 249
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.19 E-value=1.2e-05 Score=84.71 Aligned_cols=135 Identities=12% Similarity=-0.087 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC----
Q 000173 1725 LNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-------KVHLALLGLYERTEQNKLADELLYKMIKKFKHS---- 1793 (1935)
Q Consensus 1725 l~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-------~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---- 1793 (1935)
..+|..+..++...| ..+.|...|++|++..+.. .+|..++.+|...+++++|.+.|++++..++..
T Consensus 9 ~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLG--NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 457788888888899 4599999999999876432 589999999999999999999999999876432
Q ss_pred --HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1794 --CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK----HIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1794 --~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
..+|..++..+... ++++|...|++++...+... ...++..+|.+++..|++++|...|+++++....
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 66788999999999 99999999999998754321 2467888999999999999999999999987654
No 250
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.18 E-value=5.4e-05 Score=89.73 Aligned_cols=181 Identities=9% Similarity=0.056 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCChHHHHH
Q 000173 1705 ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---PKKVHLALLGLYERTEQNKLADE 1781 (1935)
Q Consensus 1705 Ar~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~---~~~v~~~l~~i~~~~~~~~~A~e 1781 (1935)
|...+++.+..-+. . -..+..++..+...| +.++|.+++.+++...+ ....+..++.+|.+.++.+.|..
T Consensus 85 a~~~l~~l~~~~~~-~----~~~~~~la~i~~~~g--~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 85 NIEELENLLKDKQN-S----PYELYLLATAQAILG--DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp CCHHHHHTTTTSCC-C----HHHHHHHHHHHHHHT--CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCC-C----cHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 77778777754221 1 123456666677789 55999999999999886 34999999999999999999999
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHH--HH--Hc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1782 LLYKMIKKFKH----SCKVWLRRVQR--LL--KQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1782 l~~~~~k~~~~----~~~vw~~~~~~--l~--~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
.++++.+..++ .-.+++.++.. .+ .. +++.|..+|+++...+|......++. . .+.+.|++++|..++
T Consensus 158 ~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl--n-~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL--N-LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH--H-HHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH--H-HHHHcCCHHHHHHHH
Confidence 99999887662 24455555544 22 23 89999999999998887632122333 3 788999999999999
Q ss_pred HHHHHhC----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1853 EGILSEY----------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1853 e~al~~~----------Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
+.+++.+ |++.+.....+.+....|+ .|..+++++.. ..|..+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 9888764 8899999888888888887 88999999998 777776
No 251
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.17 E-value=2.2e-06 Score=98.28 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc---CCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV---ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~---~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.++||+|.|+|+++.++|+||+|+...+|++|++++++.+. .++.+.|++||.|.|+|++++. ++++.||+|.
T Consensus 72 p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~~~i~LS~r~ 147 (251)
T 2je6_I 72 PKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-SIDPVLSVKG 147 (251)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-TEEEEEECCS
T ss_pred CCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 57999999999999999999999989999999999998887 8889999999999999999995 5799999875
No 252
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=7.1e-06 Score=87.16 Aligned_cols=94 Identities=16% Similarity=0.028 Sum_probs=68.8
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C----------HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-Q----------QEGVQAVVQRALLSLPRHKHIKFISQTAILEF 1840 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~----------~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~ 1840 (1935)
+.+++++|.+.|++++...|.....|++++..+... + +++|...|++||+..|.. ..+|..+|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~--~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK--DEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHH
Confidence 445567777788888877788888888888777766 4 457778888888887776 477777777777
Q ss_pred HcC-----------CHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1841 KNG-----------VADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1841 ~~g-----------~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
..| ++++|...|++++..+|++...|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664 777888888888888887654433
No 253
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.15 E-value=1.1e-06 Score=104.17 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCCCCCEEEEEEEEEe-CCeEEEEEecccccchhhH-----HhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecC
Q 000173 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKLAI-----LSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v~-~~~i~ltlK~~l~~~~~~~-----~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~ 615 (1935)
.|.+|+.+.+.|...+ .+....|.|+.+....... +.+|. .+.|+++.|+|.++.++|+||++ |++.|++|.
T Consensus 86 ~~~vGd~ie~~I~~~dfgR~aa~~aKqvi~qkireaere~i~~e~~-~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp~ 163 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFGRIAAQTAKQVLIQRIRELEKEKQFEKYS-ELKGTVTTAEVIRVMGEWADIRI-GKLETRLPK 163 (344)
T ss_dssp TCCTTCEEEEECCCCCSSSCSGGGHHHHHHHHHHHHTTCCSSCCTT-CCTTCEEEEEEEEECSSEEEEEE-TTEEEEEEG
T ss_pred cccCCCEEEEEEccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCEEEEEEEEEecCcEEEEe-CCeEEEEeH
Confidence 5899999999987664 3445555566554432221 33342 24799999999999999999999 599999999
Q ss_pred cccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCC--EEEEEEe
Q 000173 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1935)
Q Consensus 616 se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~--ri~lS~k 655 (1935)
+++. |.+.|++|+.|+|.|++++.+++ ++.||..
T Consensus 164 sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 164 KEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 9996 55789999999999999998766 5666654
No 254
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=1.4e-05 Score=85.00 Aligned_cols=104 Identities=15% Similarity=0.036 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC------Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH------KH----IKFISQTAILEFKNGVADRGRSMFEGILSE--- 1858 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~------~~----~~~~~~~a~le~~~g~~e~Ar~ife~al~~--- 1858 (1935)
....|...+..++.. ++++|...|.+||...|.+ .+ ..+|...|..+...|++++|...|+++|..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 345788888889988 9999999999999999983 22 239999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh
Q 000173 1859 ----YPKRTDLW----SIYLDQEIRLGDVDLIRGLFERAISLSLPPKK 1898 (1935)
Q Consensus 1859 ----~Pk~~dlw----~~ya~~e~k~g~~e~ar~lferal~~~~~pk~ 1898 (1935)
.|++...| +..+..+...|++++|...|++++. +.|.+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle--l~p~d 135 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE--MIEER 135 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh--cCCCc
Confidence 99999999 9999999999999999999999998 54443
No 255
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.12 E-value=5.5e-06 Score=93.91 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEec
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk~ 1449 (1935)
.++||+|.|+|+++.++|+||+|+...+|++|++++++. +..+..+.|++||.|.|+|++++. ++++.||+|.
T Consensus 55 p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~ 128 (229)
T 2ba0_A 55 PSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKD 128 (229)
T ss_dssp CCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 589999999999999999999999889999999999974 788899999999999999999995 5799999875
No 256
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=5e-05 Score=95.29 Aligned_cols=192 Identities=13% Similarity=0.119 Sum_probs=145.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhh-HHHH
Q 000173 1666 KDAPRTPDEFERLVRSSPNSS-----------------FVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-KLNI 1727 (1935)
Q Consensus 1666 ~~~~~a~~~ferll~~~P~s~-----------------~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~E-kl~l 1727 (1935)
++..+|...|.+++...|+.. .++..++..+...|++++|.+.+.+++...+.-.... ...+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 445667778888887766543 3477889999999999999999999997544221111 0123
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC------CCH
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-------KKVHLALLGLYERTEQNKLADELLYKMIKKFK------HSC 1794 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~-------~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~------~~~ 1794 (1935)
...+..+....+ ..+.|..++++++..... ..++..++.+|...|++.+|..++++++.... ...
T Consensus 98 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 98 KTLIEKFEQVPD--SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHCSCCS--CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 333333444456 469999999999875421 38999999999999999999999999987653 236
Q ss_pred HHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCC-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1795 KVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHK-----HIKFISQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1795 ~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~-----~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
.+|+..+..+... ++++|+.+|++++...+... ...++...+.++...++++.|...|..++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 7899999999999 99999999999988643321 13577788888889999999999999998764
No 257
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.09 E-value=0.00018 Score=92.35 Aligned_cols=181 Identities=7% Similarity=-0.002 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhc--C
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-------PEEAVVKVFQRALQY--C 1757 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~-------~~e~a~~vferAl~~--~ 1757 (1935)
..+...+..+.+.|++++|.++|+++.+. ....+ ...|..++......+.. ..+.|.++|+++... .
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 35677778888999999999999999864 21111 34677777776544421 147789999988765 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 000173 1758 DPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQT 1835 (1935)
Q Consensus 1758 ~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~-~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~ 1835 (1935)
|+...|..++..|.+.|+.++|.++|++|.+. ...+...|..++..+.+. +.++|.++|+++...--. .....|..+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~~ty~~L 181 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEEPELAAL 181 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence 56789999999999999999999999999875 456888899999999999 999999999999876422 235788999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEGILSE--YPKRTDLWSIYLDQE 1873 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~--~Pk~~dlw~~ya~~e 1873 (1935)
...+.+.|+.++|..+|++.-.. .|. ...|.......
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 99999999999999999998654 344 34555555543
No 258
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.08 E-value=8.7e-06 Score=96.54 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=88.1
Q ss_pred ccccCCCeEe-eEEEeecCCCeEEEeccchhcchhcc--CCccccccC--CCCEEEEEEEEEecCeEEEEECCCeEEEee
Q 000173 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1935)
Q Consensus 716 ~~~k~G~~l~-~vl~~d~~~~~i~ls~K~~l~~~~~~--~~~~~~~~~--~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~ 790 (1935)
..+.+|+.++ .+...| -++....+.|+.+...... -..-|++++ .|++++|+|.+++++|+||.+ |++.|++|
T Consensus 85 ~~~~vGd~ie~~I~~~d-fgR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDl-Gk~EgiLp 162 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKN-FGRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRI-GKLETRLP 162 (344)
T ss_dssp TTCCTTCEEEEECCCCC-SSSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred ccccCCCEEEEEEcccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEe-CCeEEEEe
Confidence 4578999999 443333 2344667778887654332 112234444 899999999999999999999 59999999
Q ss_pred CCccCcccccCcccCccCCCEEEEEEEEeeCCCC--eEEEeecccccCCCCchhhHHHHHHH
Q 000173 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 791 ~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~--rl~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
+++++ |.+.|++||.|+|.|++++.+++ ++.||.. .+.++..+|..+
T Consensus 163 ~sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt-------~p~~lk~LfelE 211 (344)
T 1hh2_P 163 KKEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR-------VPEFVIGLMKLE 211 (344)
T ss_dssp GGGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS-------SHHHHHHHHHHH
T ss_pred HHHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee-------ccHHHHHHHHhh
Confidence 99996 56789999999999999998765 5666654 345566666643
No 259
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.3e-06 Score=112.00 Aligned_cols=130 Identities=15% Similarity=-0.025 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK 1806 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~ 1806 (1935)
|..+...+...| ..++|.+.|++|++..|.. ..|..++.+|.+.+++++|.+.|+++++..|....+|+.++..+..
T Consensus 9 ~~~lg~~~~~~g--~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAK--DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 444444455677 4599999999999999874 9999999999999999999999999999999999999999999999
Q ss_pred c-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCC
Q 000173 1807 Q-QQEGVQAVVQRALLSLPRHKHIKFISQTAIL--EFKNGVADRGRSMFE-----------GILSEYPK 1861 (1935)
Q Consensus 1807 ~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~l--e~~~g~~e~Ar~ife-----------~al~~~Pk 1861 (1935)
. ++++|.+.|++|++..|... .+|..++.+ +.+.|++++|..+|+ +++...|.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDK--DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCT--THHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 9 99999999999999999885 567777766 888899999999999 77776655
No 260
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.04 E-value=2.4e-06 Score=92.83 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=60.6
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCc----------cccCCCCcEEEEEEEEEeCCCC---E
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP----------EKEFPIGKLVAGRVLSVEPLSK---R 1442 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~----------~~~f~~G~~V~~kVl~vd~~~~---r 1442 (1935)
..+|+++.|.|++++++|+||+|++ ++|+||+++|++.|.-++ ...|++||.|+++|+++|.+.+ +
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred cCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 4589999999999999999999984 789999999988766555 4689999999999999998764 4
Q ss_pred EEEEEec
Q 000173 1443 VEVTLKT 1449 (1935)
Q Consensus 1443 i~lSlk~ 1449 (1935)
|. |+|+
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 44 5543
No 261
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.97 E-value=2e-05 Score=83.67 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV----------ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~----------~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
.+++|++.|+++++..|.+ ..+|..++..+...++ +++|...|+++|+.+|+..++|+.++..+..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~--aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 6899999999999999988 6999999999998876 469999999999999999999999999999875
Q ss_pred -----------CHHHHHHHHHHHHhcCCCchhH
Q 000173 1878 -----------DVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1878 -----------~~e~ar~lferal~~~~~pk~~ 1899 (1935)
++++|...|++|+. +.|...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD--EQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH--hCCCCH
Confidence 89999999999999 777664
No 262
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.95 E-value=1.6e-05 Score=80.37 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcC---CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYC---DPK-KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~---~~~-~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~r 1818 (1935)
++|...|++|++.. |.. .+|..++.+|...+++++|.+.|+++++.+|.+..+|+.++..+... ++++|...|++
T Consensus 7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77999999999985 433 99999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhCCCCC
Q 000173 1819 ALLSLPRHK 1827 (1935)
Q Consensus 1819 alk~~p~~~ 1827 (1935)
++...|.+.
T Consensus 87 al~~~p~~~ 95 (117)
T 3k9i_A 87 IIAETSDDE 95 (117)
T ss_dssp HHHHHCCCH
T ss_pred HHHhCCCcH
Confidence 999998874
No 263
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=5.9e-05 Score=75.73 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1812 VQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1812 A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
|...|+++++..|.. ..+|..+|.+++..|++++|...|++++..+|.+...|..++..+...|+++.|+..|++++.
T Consensus 4 a~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555544 355555555555556666666666666665565555565555555556666666666665555
No 264
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=97.90 E-value=1.8e-05 Score=77.71 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=64.2
Q ss_pred CCCCeEEEEEEEE---ecCcEEEEEEecCceeEEEeccccCCcccccccccccccCCCeEeeEEEeecCCCeEEEeccch
Q 000173 668 KLGSLVSGVVDVV---TPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYS 744 (1935)
Q Consensus 668 ~~G~iv~g~V~~v---~~~g~~V~l~~~~~v~g~i~~~hLsd~~~~~~~~~~~~k~G~~l~~vl~~d~~~~~i~ls~K~~ 744 (1935)
..++.++|+|+.. ..+| |+.- ..++.+++++.+.|++...
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~-~~gg~dvfvH~s~l~~~~~----------------------------------- 54 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITP-DDGSKDVFVHFSAGSSGAA----------------------------------- 54 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEE-SSSSCEEEEECCCSCSSSC-----------------------------------
T ss_pred cccccceeEEEEEECCCCCE-EEEe-CCCCcEEEEEEEEEecCCc-----------------------------------
Confidence 3567889999977 4568 5554 1346999999888875210
Q ss_pred hcchhccCCccccccCCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccc
Q 000173 745 LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR 799 (1935)
Q Consensus 745 l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~ 799 (1935)
....+++|+.+.|.|.+++++|+||++.+++.||+|+|+++|.++
T Consensus 55 ----------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 55 ----------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp ----------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred ----------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 013467899999999999999999999999999999999998754
No 265
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.88 E-value=7.9e-05 Score=70.68 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
...|+.++..+... ++++|...|++++...|.. ..+|..+|.+++..|++++|...|+++++.+|.+..+|..++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45566666666666 6666666666666666654 46666666666667777777777777777677666666666666
Q ss_pred HHHc
Q 000173 1873 EIRL 1876 (1935)
Q Consensus 1873 e~k~ 1876 (1935)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 266
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.88 E-value=4.1e-05 Score=76.93 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1778 LADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1778 ~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al 1856 (1935)
.|.+.|+++++..|.+..+|+.++..+... ++++|...|++++...|.. ..+|..+|.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556666666666666666666666666 6666666666666666554 3566666666666666666666666666
Q ss_pred HhCCC
Q 000173 1857 SEYPK 1861 (1935)
Q Consensus 1857 ~~~Pk 1861 (1935)
...|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 66553
No 267
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.80 E-value=2.5e-05 Score=102.21 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=63.8
Q ss_pred CCCCCCc--EEEeEEEEEeeceEEEEEecCceeEEeeccccCc--cc-c-c--------CcccccCCCCEEEEEEEEEec
Q 000173 1464 SNLHVGD--IVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--DH-V-D--------NIETIYRAGEKVKVKILKVDK 1529 (1935)
Q Consensus 1464 ~~~~~G~--~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~--~~-~-~--------~~~~~~~~Gd~V~~~Il~id~ 1529 (1935)
..-++|+ ++.|+|++|++||+||.|.+.+++||+|+|++++ ++ . . +....|++||.|+|+|+++|.
T Consensus 554 l~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 554 LKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRM 633 (644)
T ss_dssp HGGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEET
T ss_pred hhhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeC
Confidence 3457899 9999999999999999996558999999999973 22 1 0 235679999999999999999
Q ss_pred CCCeeEEec
Q 000173 1530 EKRRISLGM 1538 (1935)
Q Consensus 1530 ~~~ri~lsl 1538 (1935)
++++|.|++
T Consensus 634 ~~~~I~~~l 642 (644)
T 2id0_A 634 ETRSIIARP 642 (644)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999986
No 268
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=2.3e-05 Score=77.55 Aligned_cols=91 Identities=14% Similarity=0.004 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR------TDLW 1866 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~------~dlw 1866 (1935)
...|+.++..++.. ++++|...|++++...|.+ ..+|..+|..++..|++++|...|++++..+|.+ ..+|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44566666666666 6666666666666666655 4666666666666666666666666666666665 5555
Q ss_pred HHHHHHHHHcCCHHHHHHHH
Q 000173 1867 SIYLDQEIRLGDVDLIRGLF 1886 (1935)
Q Consensus 1867 ~~ya~~e~k~g~~e~ar~lf 1886 (1935)
..++..+...|+.+.|...|
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 55555555555544444333
No 269
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.70 E-value=6.8e-05 Score=83.59 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=55.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc-------------------cCcccccCCCCEEEEEEE
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-------------------DNIETIYRAGEKVKVKIL 1525 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~-------------------~~~~~~~~~Gd~V~~~Il 1525 (1935)
...+|+++.|+|+++++||+||+|+ .++|++|++++.+++. ++....|+.||.|+++|+
T Consensus 78 ~p~~GEv~~G~Vs~vt~~GifV~lg--~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCSEEGIRVTIS--FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIE 155 (203)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS--SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccEEEEEEe--CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEE
Confidence 4578999999999999999999994 5899999999977653 345568999999999999
Q ss_pred EEecCC
Q 000173 1526 KVDKEK 1531 (1935)
Q Consensus 1526 ~id~~~ 1531 (1935)
+++...
T Consensus 156 ~v~~~~ 161 (203)
T 3ayh_B 156 SEDFVD 161 (203)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 998643
No 270
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00031 Score=66.50 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
..|..++.+|...+++++|...|++++...|....+|+.++..+... ++++|...|++++...|.+ ..++..++.++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 67888888888899999999999999988888889999999988888 9999999999999988876 57888888877
Q ss_pred HHcC
Q 000173 1840 FKNG 1843 (1935)
Q Consensus 1840 ~~~g 1843 (1935)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
No 271
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=2e-05 Score=78.06 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCCh----HHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKH----IKFISQT 1835 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~----~~~~~~~ 1835 (1935)
..|..++.++...+++++|.+.|++++...|.+..+|+.++..+... ++++|...|++++...|.+.. ..++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999 999999999999999887622 3677777
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEG 1854 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~ 1854 (1935)
+..+...|+.+.|...|++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHhHhhhHhHHHH
Confidence 8888777776666555544
No 272
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.54 E-value=8.9e-05 Score=83.12 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccc--------------cCcccccCCCCEEEEEEEEEec
Q 000173 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--------------DNIETIYRAGEKVKVKILKVDK 1529 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~--------------~~~~~~~~~Gd~V~~~Il~id~ 1529 (1935)
-.-.+|+++.|+|++|++||+||+|.+ -++|++|++++.+++. ++-...|+.||.|+++|.++|.
T Consensus 77 f~p~vGEv~~G~Is~Vt~fGifVeL~g-~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~ 155 (218)
T 2ckz_B 77 FKPFLGEIVTGWISKCTAEGIKVSLLG-IFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVF 155 (218)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECTT-SCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEE
T ss_pred ecCCCCCEEEEEEEEEccCcEEEEccC-ccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEc
Confidence 356789999999999999999999964 5899999999976653 2335679999999999999996
Q ss_pred CCC
Q 000173 1530 EKR 1532 (1935)
Q Consensus 1530 ~~~ 1532 (1935)
..+
T Consensus 156 ~~~ 158 (218)
T 2ckz_B 156 VDV 158 (218)
T ss_dssp CCC
T ss_pred ccC
Confidence 554
No 273
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.51 E-value=0.00024 Score=69.57 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
..+|..+|..++..|++++|...|+++++.+|.+..+|..++..+...|++++|...|++++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777777777777777777777777777777777777777777777777777777777776
No 274
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.46 E-value=0.0018 Score=74.98 Aligned_cols=110 Identities=10% Similarity=0.092 Sum_probs=85.6
Q ss_pred HHHHHHhCC-CCChHHHHHHHHHHHH-H--cC------CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHc-----CC
Q 000173 1816 VQRALLSLP-RHKHIKFISQTAILEF-K--NG------VADRGRSMFEGILSEYPKR--TDLWSIYLDQEIRL-----GD 1878 (1935)
Q Consensus 1816 l~ralk~~p-~~~~~~~~~~~a~le~-~--~g------~~e~Ar~ife~al~~~Pk~--~dlw~~ya~~e~k~-----g~ 1878 (1935)
+..++..+. .+...-+|...+..-+ . .| ....|+.+++++++.+|+- ...|..++.++.+. |+
T Consensus 140 ~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 140 LHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 445555442 2222356666666443 2 23 3789999999999999995 44999999999995 99
Q ss_pred HHHHHHHHHHHHhcCCCchh-HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 000173 1879 VDLIRGLFERAISLSLPPKK-MKFLFKKYLEYEKS-VGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1879 ~e~ar~lferal~~~~~pk~-~k~l~~~yl~~E~~-~G~~e~a~~v~~rAle 1928 (1935)
.++|+.+|+||+. +.|.. + ..+.-|.+|... .|+.+.+.+.+++|+.
T Consensus 220 ~ekA~~~ferAL~--LnP~~~i-d~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 220 MEKAHTAFEHLTR--YCSAHDP-DHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHH--HCCTTCS-HHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 9999999999999 88764 6 688999999877 4999999999999986
No 275
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.43 E-value=0.0002 Score=93.81 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=61.7
Q ss_pred cCCCC--EEEEEEEEEecCeEEEEEC-CCeEEEeeCCccCc--cc-cc---------CcccCccCCCEEEEEEEEeeCCC
Q 000173 759 IHPNS--VVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVD--GQ-RA---------DLSKTYYVGQSVRSNILDVNSET 823 (1935)
Q Consensus 759 ~~~G~--~~~G~V~~i~~~G~fV~f~-~gl~Glv~~s~ls~--~~-~~---------~~~~~f~~Gq~V~~~V~~vd~e~ 823 (1935)
-++|+ .+.|+|++++++|+||++. +|+.||+|.|++++ ++ .- +....|++||.|+|+|.++|.++
T Consensus 556 ~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~ 635 (644)
T 2id0_A 556 DKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMET 635 (644)
T ss_dssp GGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTT
T ss_pred hccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCC
Confidence 35788 9999999999999999994 78999999999973 21 11 34567999999999999999999
Q ss_pred CeEEEee
Q 000173 824 GRITLSL 830 (1935)
Q Consensus 824 ~rl~LSl 830 (1935)
++|.+++
T Consensus 636 ~~I~~~l 642 (644)
T 2id0_A 636 RSIIARP 642 (644)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 276
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00025 Score=68.75 Aligned_cols=60 Identities=10% Similarity=-0.063 Sum_probs=28.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCC
Q 000173 1767 LGLYERTEQNKLADELLYKMIKKFKHSCK-VWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRH 1826 (1935)
Q Consensus 1767 ~~i~~~~~~~~~A~el~~~~~k~~~~~~~-vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~ 1826 (1935)
+..+...+++++|.+.|+++++..|.+.. +|+.++..+... ++++|...|+++++..|.+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 33444444444444444444444444444 444444444444 4444444444444444443
No 277
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.41 E-value=0.00013 Score=85.66 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=61.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCc-ccC---------CccccCCCCcEEEEEEEEEeCCCCEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG-YVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~-~~~---------~~~~~f~~G~~V~~kVl~vd~~~~ri~l 1445 (1935)
.++||+|.|+|+++..+|+||+|+...+|++|++++++. ++. +..+.|++||.|.|+|++++. ++.+.|
T Consensus 93 P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~-~~~i~L 171 (308)
T 2nn6_H 93 GEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS-DGAVSL 171 (308)
T ss_dssp CCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET-TTEEEE
T ss_pred CCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC-CCCEEE
Confidence 578999999999999999999999778999999999753 321 244789999999999999994 778999
Q ss_pred EEec
Q 000173 1446 TLKT 1449 (1935)
Q Consensus 1446 Slk~ 1449 (1935)
|.|.
T Consensus 172 Str~ 175 (308)
T 2nn6_H 172 HTRS 175 (308)
T ss_dssp ECCS
T ss_pred EecC
Confidence 8875
No 278
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.00032 Score=68.71 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
|.++.+|+.++..++.. ++++|...|++++...|... .+|..+|.++...|++++|...|+++++..|.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 55666666666666666 66666666666666666653 56666666666666666666666666666554
No 279
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.37 E-value=0.00014 Score=96.89 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=53.4
Q ss_pred cEEEeEEEEEeeceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCCEEEEEEEEEecC--
Q 000173 1470 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE-- 1530 (1935)
Q Consensus 1470 ~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels--~~~~-----------~~----~~~~~~~Gd~V~~~Il~id~~-- 1530 (1935)
+++.|+|.+|.+||+||.|.+.+++||+|+|+++ +++. .+ ....|++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 7999999999999999999765899999999996 4331 12 257899999999999999988
Q ss_pred -CCeeEEecc
Q 000173 1531 -KRRISLGMK 1539 (1935)
Q Consensus 1531 -~~ri~lslK 1539 (1935)
++||.||||
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999986
No 280
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.37 E-value=0.00029 Score=88.06 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=63.9
Q ss_pred CCCCCCcEEEeEEEEEeec--eEEEEEecCceeEEeeccccCcccc---------cCcccccCCCCEEEEEEEEEecCCC
Q 000173 1464 SNLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHV---------DNIETIYRAGEKVKVKILKVDKEKR 1532 (1935)
Q Consensus 1464 ~~~~~G~~v~G~V~~v~~~--G~FV~l~~~~v~Gl~h~sels~~~~---------~~~~~~~~~Gd~V~~~Il~id~~~~ 1532 (1935)
....+|++|.|+|++|.++ |+||+|.+ +..||+|+|++++.+. .++.+.+++||.|.|.|++.....+
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~-gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~K 119 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 119 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSS-SSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTC
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCC-CcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccC
Confidence 4567999999999999999 99999976 8899999999987763 3466789999999999999887777
Q ss_pred eeEEecc
Q 000173 1533 RISLGMK 1539 (1935)
Q Consensus 1533 ri~lslK 1539 (1935)
...|+..
T Consensus 120 Ga~lTt~ 126 (517)
T 2bx2_L 120 GAALTTF 126 (517)
T ss_dssp CCEEESS
T ss_pred CceEEee
Confidence 7666543
No 281
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.00035 Score=67.67 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIK-FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~-~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+..+..++.. ++++|...|+++++..|.+ .. +|..+|.+++..|++++|...|++++..+|.+..+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3455566666 7888888888888877765 46 7777888888888888888888888888887777663
No 282
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.34 E-value=0.0015 Score=83.24 Aligned_cols=121 Identities=11% Similarity=0.100 Sum_probs=77.2
Q ss_pred HHHcCChHHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCChH---HHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFK-----H---SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHKHI---KFIS 1833 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~-----~---~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~~~---~~~~ 1833 (1935)
+...|+|++|..+|++++.+.. + ...++.+++..|..+ ++++|..+|+++|.. ++.. |+ ..+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-Hp~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-NAQLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-CHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 3455666666666666665432 2 234455666666666 666666666666653 2222 22 5677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEY-----PKRT---DLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~---dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++|.++..+|++++|..+|++++... |++. ++...+.+.+..++.+++|..+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888888887642 4443 3455566666677778888888877765
No 283
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00017 Score=97.84 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=60.9
Q ss_pred CcEEEeEEEEEeeceEEEEEecCceeEEeeccccC--cccc-----------cC----cccccCCCCEEEEEEEEEecC-
Q 000173 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS--EDHV-----------DN----IETIYRAGEKVKVKILKVDKE- 1530 (1935)
Q Consensus 1469 G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels--~~~~-----------~~----~~~~~~~Gd~V~~~Il~id~~- 1530 (1935)
|+++.|+|.+|++||+||.|.+.+++|++|+|+++ +++. ++ ....|++||.|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 99999999999999999999766899999999997 4431 11 347899999999999999864
Q ss_pred --CCeeEEecc
Q 000173 1531 --KRRISLGMK 1539 (1935)
Q Consensus 1531 --~~ri~lslK 1539 (1935)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999987
No 284
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.32 E-value=0.00017 Score=84.56 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=64.0
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcc----cc------cCcccccCCCCEEEEEEEEEecCCCee
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED----HV------DNIETIYRAGEKVKVKILKVDKEKRRI 1534 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~----~~------~~~~~~~~~Gd~V~~~Il~id~~~~ri 1534 (1935)
-.++||+|.|+|+++.++|+||.|.. ...|++|+|+++.. +. .+..+.|++||.|.|+|++++ +.+.+
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s-~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i 169 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNS-RLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAV 169 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSS-SSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECC-CcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCE
Confidence 46899999999999999999999963 57899999999753 12 134578999999999999999 57889
Q ss_pred EEeccccccC
Q 000173 1535 SLGMKSSYFK 1544 (1935)
Q Consensus 1535 ~lslK~~~~~ 1544 (1935)
.||+|...++
T Consensus 170 ~LStr~~~LG 179 (308)
T 2nn6_H 170 SLHTRSLKYG 179 (308)
T ss_dssp EEECCSSTTC
T ss_pred EEEecCcCCc
Confidence 9999876553
No 285
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.31 E-value=0.0022 Score=66.86 Aligned_cols=106 Identities=8% Similarity=-0.089 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK----Q-QQEGVQAVVQR 1818 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~----~-~~e~A~~ll~r 1818 (1935)
++|...|++|++..+..-. ++.+|......++|.+.|+++... .++..++.++.++.. . ++++|...|++
T Consensus 12 ~~A~~~~~~aa~~g~~~a~---lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 86 (138)
T 1klx_A 12 KKAIQYYVKACELNEMFGC---LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSK 86 (138)
T ss_dssp HHHHHHHHHHHHTTCTTHH---HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHhhh---HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 5566666666666544333 555665555666666666666654 456666666666665 3 66666666666
Q ss_pred HHHhCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 000173 1819 ALLSLPRHKHIKFISQTAILEFK----NGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1819 alk~~p~~~~~~~~~~~a~le~~----~g~~e~Ar~ife~al~~ 1858 (1935)
|... .++..+..++.++.. .+++++|...|+++...
T Consensus 87 Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 87 ACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 6553 124555666666655 55666666666665544
No 286
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.31 E-value=0.00035 Score=77.85 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=53.5
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccc-------------------cCcccCccCCCEEEEEEEEee
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQR-------------------ADLSKTYYVGQSVRSNILDVN 820 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~-------------------~~~~~~f~~Gq~V~~~V~~vd 820 (1935)
..|+++.|.|++++++|+||++ |.+.|++|.+++.+++. ++....|++||.|++||.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 4799999999999999999999 78899999999976543 344556999999999999998
Q ss_pred CC
Q 000173 821 SE 822 (1935)
Q Consensus 821 ~e 822 (1935)
..
T Consensus 159 ~~ 160 (203)
T 3ayh_B 159 FV 160 (203)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 287
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.22 E-value=0.0005 Score=85.94 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCCCCEEEEEEEEEeec--eEEEEeCCCcEEEEECccCCCcccC---------CccccCCCCcEEEEEEEEEeCCCCEEE
Q 000173 1376 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGYVE---------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~--G~fV~l~~~v~g~V~~s~lsd~~~~---------~~~~~f~~G~~V~~kVl~vd~~~~ri~ 1444 (1935)
..+|+++.|+|++|.++ |+||++|.+..||+|++++++.|.. +..+.+++||.|.+.|+.....++...
T Consensus 43 ~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~ 122 (517)
T 2bx2_L 43 QKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAA 122 (517)
T ss_dssp CCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCE
T ss_pred CCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCce
Confidence 56899999999999999 9999999999999999999987743 355779999999999999877677777
Q ss_pred EEEecCc
Q 000173 1445 VTLKTSD 1451 (1935)
Q Consensus 1445 lSlk~~~ 1451 (1935)
||..-+.
T Consensus 123 lTt~isl 129 (517)
T 2bx2_L 123 LTTFISL 129 (517)
T ss_dssp EESSCCE
T ss_pred EEeeEEe
Confidence 6665443
No 288
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0011 Score=64.09 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHc-C---HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1791 KHSCKVWLRRVQRLLKQ-Q---QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~---~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
|.++.+|..|+..++.. + .++|+.+|++||+..|.+ +..++.+|..+++.|++++|...|++++...|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34555555555555433 2 455555555555555554 355555555555555555555555555555554
No 289
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.20 E-value=0.00066 Score=80.61 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=70.8
Q ss_pred EEeccchhcchhcc--CCcccccc--CCCCEEEEEEEE----EecCeEEEEECC---CeEEEeeCCccCcccccCcccCc
Q 000173 738 LLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTY 806 (1935)
Q Consensus 738 ~ls~K~~l~~~~~~--~~~~~~~~--~~G~~~~G~V~~----i~~~G~fV~f~~---gl~Glv~~s~ls~~~~~~~~~~f 806 (1935)
..++|+.+...... --.-|+++ +.|++++|+|.+ +.+.++||.+.+ ++.|++|++++. |.+.|
T Consensus 103 aqtaKQvI~QkiREaEr~~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~ 176 (366)
T 1k0r_A 103 ATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESY 176 (366)
T ss_dssp TTTTTHHHHHHHHCCC--------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccC
Confidence 34555555443221 01123444 489999999999 999999999976 599999999986 45889
Q ss_pred cCCCEEEEEEEEeeCCCCe--EEEeecccccCCCCchhhHHHHHHH
Q 000173 807 YVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 807 ~~Gq~V~~~V~~vd~e~~r--l~LSlk~~~~~~~d~~~i~~~l~~~ 850 (1935)
++||.|+|.|++|+.+.+. +.||. +.+.++..+|..+
T Consensus 177 ~~GDrVkvyV~~V~~~~kgpqI~LSR-------T~p~lv~~Lfe~E 215 (366)
T 1k0r_A 177 EHGNRLRCYVVGVTRGAREPLITLSR-------THPNLVRKLFSLE 215 (366)
T ss_dssp CTTCEEEEEEEEEECCSSSCEEEEES-------SCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEecCCCccEEEEEe-------CChHHHHHHHHhc
Confidence 9999999999999988655 55554 3446677777654
No 290
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.20 E-value=0.013 Score=70.70 Aligned_cols=171 Identities=6% Similarity=0.014 Sum_probs=91.3
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHHHHHHH--HHcC---CHHHHHHHHHHHHHhccccchhhHHHH--
Q 000173 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM--LSMA---DVEKARSIAERALQTINIREENEKLNI-- 1727 (1935)
Q Consensus 1655 ~~~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~y~~~~--l~~~---e~dkAr~v~erAl~~i~~~ee~Ekl~l-- 1727 (1935)
++...-...+..+. .....+++....|.+..+|-.|++.. +..+ .+.+|+.+|++|++.-|. +-....
T Consensus 165 ei~~~I~~aL~~~l--~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~---~a~A~A~l 239 (372)
T 3ly7_A 165 DLLESLSKALNQPW--PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE---FTYARAEK 239 (372)
T ss_dssp HHHHHHHHHTTCCC--CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHhCchh--hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 34444444444443 35566777788899888888887654 2222 356777777777765442 111112
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 000173 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ 1807 (1935)
Q Consensus 1728 W~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~ 1807 (1935)
+++|+.+ ..++... ........+ |.+.. .++...+..+.+|..++..++..
T Consensus 240 a~a~~~~-~~~~~~~-~~~~~~l~~--------------------------a~~a~-~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 240 ALVDIVR-HSQHPLD-EKQLAALNT--------------------------EIDNI-VTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHH-HHHSCCC-HHHHHHHHH--------------------------HHHHH-HTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hccCCCc-hhhHHHHHH--------------------------HHHHH-HhcccCCcCHHHHHHHHHHHHhC
Confidence 2222211 1111100 110000111 11100 11122355666666666655555
Q ss_pred -CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 000173 1808 -QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR 1862 (1935)
Q Consensus 1808 -~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~ 1862 (1935)
++++|...++||+...|. ...|..+|.++.-.|++++|...|++|+..+|..
T Consensus 291 gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 777777777777777642 3566666777777777777777777777777764
No 291
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.17 E-value=0.0031 Score=80.34 Aligned_cols=126 Identities=10% Similarity=0.064 Sum_probs=97.0
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSI 1868 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~---~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d---lw~~ 1868 (1935)
+..+ ++++|..+|+++|..... ..| ..++..+|.++..+|++++|..+|+++|..+ |.+.+ .++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4455 899999999999986422 233 3678889999999999999999999999763 44555 5889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CC---CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAISL---SL---PPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~~---~~---~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v 1930 (1935)
++.++..+|++++|+.+|++|+.. .+ .|.-+ .+.......+.+.+.++.++.+|.+|.+-.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~-~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITK-DLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999962 12 23333 344444455666788899999999998744
No 292
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.14 E-value=0.0045 Score=64.56 Aligned_cols=109 Identities=10% Similarity=-0.098 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH----cCCHHHH
Q 000173 1774 EQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFK----NGVADRG 1848 (1935)
Q Consensus 1774 ~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~----~g~~e~A 1848 (1935)
.++++|.+.|+++...- ++... ++.++... ..++|.+.|++|... .++..+..+|.+++. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35788999999999875 33333 77777777 888899999999986 246899999999998 8899999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 000173 1849 RSMFEGILSEYPKRTDLWSIYLDQEIR----LGDVDLIRGLFERAISL 1892 (1935)
Q Consensus 1849 r~ife~al~~~Pk~~dlw~~ya~~e~k----~g~~e~ar~lferal~~ 1892 (1935)
..+|+++... .+.+.+..++.++.. .++.++|...|++|...
T Consensus 81 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999999876 677889999999998 89999999999999983
No 293
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.0086 Score=72.17 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CHHHHHHHHHHHH--HhCCCCChHHHHHHHHHHHHHcCC
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ---------QQEGVQAVVQRAL--LSLPRHKHIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~---------~~e~A~~ll~ral--k~~p~~~~~~~~~~~a~le~~~g~ 1844 (1935)
+.+|+++|+++++..|+...+|-.++..+... .....+..++++. ...|.. ..+|..+|..++-.|+
T Consensus 215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~--a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL--SIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC--HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC--HHHHHHHHHHHHhCCC
Confidence 46777777777777777766666444433321 1122222333221 222333 5788888888887899
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEY 1909 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~ 1909 (1935)
+++|...+++++..+|. ...|..++.++.-.|+.++|...|++|+. +.|...-..|..=+-|
T Consensus 293 ~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHHhCcee
Confidence 99999999999999975 66778888889999999999999999999 5554443455544433
No 294
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.014 Score=63.63 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHH----cCC--hHHHH-HHHHHHHHhcCCC---------HHHHHHHHH
Q 000173 1744 EAVVKVFQRALQY-----CDPKKVHLALLGLYER----TEQ--NKLAD-ELLYKMIKKFKHS---------CKVWLRRVQ 1802 (1935)
Q Consensus 1744 e~a~~vferAl~~-----~~~~~v~~~l~~i~~~----~~~--~~~A~-el~~~~~k~~~~~---------~~vw~~~~~ 1802 (1935)
+..++.|++.++. .++..+|..|+.-... .+. -..-. .+++++++.|.+. .++|+.|+.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 4556777777765 2445888888773332 222 12234 6788888776432 678888888
Q ss_pred HHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000173 1803 RLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1875 (1935)
Q Consensus 1803 ~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k 1875 (1935)
++.......++++|.-+...-=...+..+|..||.++...|++.+|..+|+.+++..-.=. .|...|..|..+
T Consensus 89 ~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 89 LFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 6621146688888888877766667778888999988888999999999998888764433 366667777654
No 295
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00074 Score=75.72 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCccc--------------CCccccCCCCcEEEEEEEEEeCCC
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV--------------ESPEKEFPIGKLVAGRVLSVEPLS 1440 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~--------------~~~~~~f~~G~~V~~kVl~vd~~~ 1440 (1935)
.+|+++.|.|++|+++|+||+|...++|++|++++.++|. ++-...|++|+.|+++|.+++...
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~ 157 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVD 157 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEccc
Confidence 4799999999999999999999547899999999977542 222456999999999999998644
No 296
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0043 Score=65.13 Aligned_cols=81 Identities=10% Similarity=-0.019 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNG---VADRGRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g---~~e~Ar~ife~al~~~-P-k~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
...+++.|.++++..+.. .++.++||..+.+.. +.++|..+|+.+++.. | .+.+.|+.++-.+.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~~~--~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 455666677766655433 467777777777666 4457777777777776 5 45667777777777777777777
Q ss_pred HHHHHHHh
Q 000173 1884 GLFERAIS 1891 (1935)
Q Consensus 1884 ~lferal~ 1891 (1935)
.+|+++++
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777777
No 297
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.02 E-value=0.0012 Score=74.05 Aligned_cols=70 Identities=31% Similarity=0.469 Sum_probs=60.9
Q ss_pred CCCEEEEEEEE----EEcCcCeEEEEeCC---ceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEe
Q 000173 1259 EGDIVGGRISK----ILSGVGGLVVQIGP---HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEIS 1331 (1935)
Q Consensus 1259 ~G~iv~g~V~~----v~~~~~g~~V~l~~---~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~vd 1331 (1935)
.|++|+|+|.+ +.+. .++|+||. +.+|++|..|+. |.+.|++|+.|+|+|++++
T Consensus 7 ~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~Eqi-----------------p~E~~~~GDrIkayV~~V~ 67 (251)
T 2asb_A 7 EGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAEQV-----------------PGESYEHGNRLRCYVVGVT 67 (251)
T ss_dssp TTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGGGSC-----------------TTCCCCTTCEEEEEEEEEE
T ss_pred CCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHHHcC-----------------CCccCCCCCEEEEEEEEEE
Confidence 89999999999 7777 99999997 699999999873 6688999999999999999
Q ss_pred cCCCCceEEEEeecccc
Q 000173 1332 RTVRGTFHVELSLRSSL 1348 (1935)
Q Consensus 1332 ~~~~g~~~i~lSlr~s~ 1348 (1935)
...+| ..+.||+..+.
T Consensus 68 ~~~~g-pqIiLSRt~p~ 83 (251)
T 2asb_A 68 RGARE-PLITLSRTHPN 83 (251)
T ss_dssp CCSSS-CEEEEESSCHH
T ss_pred cCCCC-CEEEEEeccHH
Confidence 86543 68999987664
No 298
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.98 E-value=0.0013 Score=78.17 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=60.6
Q ss_pred hccCC--CCCEEEEEEEE----EeeceEEEEeCC---CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEE
Q 000173 1373 IEDLS--PNMIVQGYVKN----VTSKGCFIMLSR---KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1935)
Q Consensus 1373 ~~~lk--~G~~v~G~V~~----v~~~G~fV~l~~---~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri 1443 (1935)
+.+|+ +|++|.|.|.+ +.+.++||+||. +++|++|.+++. |.+.|++||.|++.|++|+.+++..
T Consensus 123 ~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~~~~GDrVkvyV~~V~~~~kgp 196 (366)
T 1k0r_A 123 YGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREP 196 (366)
T ss_dssp ----CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSC
T ss_pred HHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCccCCCCCEEEEEEEEEecCCCcc
Confidence 34454 99999999999 999999999996 599999999987 5689999999999999999887666
Q ss_pred EEEEecCcc
Q 000173 1444 EVTLKTSDS 1452 (1935)
Q Consensus 1444 ~lSlk~~~~ 1452 (1935)
.+.|....+
T Consensus 197 qI~LSRT~p 205 (366)
T 1k0r_A 197 LITLSRTHP 205 (366)
T ss_dssp EEEEESSCH
T ss_pred EEEEEeCCh
Confidence 666655444
No 299
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.97 E-value=0.0014 Score=70.59 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=60.4
Q ss_pred CCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEe
Q 000173 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~ls 1537 (1935)
.++||+|-|.|+.+..++++|.|.+....|++|++.+. ...++....|++||.|.|+|..++. ...+.|+
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Lt 74 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIE 74 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEE
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEE
Confidence 57899999999999999999999631589999999885 3346678899999999999999984 5688998
No 300
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.96 E-value=0.0051 Score=64.30 Aligned_cols=128 Identities=13% Similarity=0.231 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHc---CHHHHHHHHHHHHHhCCCCC-------hHHHHHHHHHHHHHcCC
Q 000173 1777 KLADELLYKMIKKF--KHSCKVWLRRVQRLLKQ---QQEGVQAVVQRALLSLPRHK-------HIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~--~~~~~vw~~~~~~l~~~---~~e~A~~ll~ralk~~p~~~-------~~~~~~~~a~le~~~g~ 1844 (1935)
..++..|+..+..+ .+...+|+.|+.+..+. .-..-..+++||++.+.... .+++|+.||.+.
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~----- 81 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN----- 81 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB-----
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc-----
Confidence 34455566666555 34567777777777776 32335567777777664422 257777777652
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1845 ADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
+.++.+|.-+...- -+...+|..||.++...|++.+|..+|+.++.. .......+-.+|-.|+.+
T Consensus 82 -~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~--~A~P~~rL~~~~~~F~~R 148 (152)
T 4a1g_A 82 -SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN--QAEPREFLQQQYRLFQTR 148 (152)
T ss_dssp -SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBSHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHH
Confidence 23677777766542 345667888888888888888888888888873 333344566666666543
No 301
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.95 E-value=0.0016 Score=70.12 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=61.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEE
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSl 1447 (1935)
.++||+|-|.|+.+..++.+|+|+. ..+|++|++++. ...++.+..|++||.|.|+|.+++. ++.+.||.
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc 75 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIEC 75 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEES
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEEEEecC-CCceEEEe
Confidence 4689999999999999999999998 899999999886 4457788889999999999999985 56788883
No 302
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.02 Score=62.51 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=103.1
Q ss_pred ChHHHHHHHHHHHHh--c--CCCHHHHHHHHHHHHHc----CH--H-HHH-HHHHHHHHhCCCCC-------hHHHHHHH
Q 000173 1775 QNKLADELLYKMIKK--F--KHSCKVWLRRVQRLLKQ----QQ--E-GVQ-AVVQRALLSLPRHK-------HIKFISQT 1835 (1935)
Q Consensus 1775 ~~~~A~el~~~~~k~--~--~~~~~vw~~~~~~l~~~----~~--e-~A~-~ll~ralk~~p~~~-------~~~~~~~~ 1835 (1935)
+....+..|++.+.. + .+...+|+.|+.+.... .. + .-. .+++||++.+-... .+++|+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 345677788887776 4 46689999999999877 22 1 133 78999999765532 26899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al~~~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
|.+. ..++...++.+|.-+...- -+...+|..||.++...|++.+|..+|+.++.... .....+-.+|-.|+.+
T Consensus 87 a~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A--~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 87 INLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC--RPYNRLLRSLSNYEDR 162 (202)
T ss_dssp HHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BSHHHHHHHHHHHHHH
T ss_pred HHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHHH
Confidence 9976 3345779999999988763 45678899999999999999999999999999443 3344678888887765
No 303
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.94 E-value=0.0023 Score=71.88 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=65.9
Q ss_pred CCCCEEEEEEEE----EecCeEEEEECC---CeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCC--CeEEEee
Q 000173 760 HPNSVVHGYVCN----IIETGCFVRFLG---RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSL 830 (1935)
Q Consensus 760 ~~G~~~~G~V~~----i~~~G~fV~f~~---gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~--~rl~LSl 830 (1935)
+.|++++|+|.+ +.+..+||.+.. +..|++|++++. |.+.|++||.|+|.|++++.+. .++.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 479999999999 888999999965 599999999985 5688999999999999999875 6788886
Q ss_pred cccccCCCCchhhHHHHHHH
Q 000173 831 KQSCCSSTDASFMQEHFLLE 850 (1935)
Q Consensus 831 k~~~~~~~d~~~i~~~l~~~ 850 (1935)
. .+.++..+|..+
T Consensus 80 t-------~p~lvk~Lfe~E 92 (251)
T 2asb_A 80 T-------HPNLVRKLFSLE 92 (251)
T ss_dssp S-------CHHHHHHHHHHH
T ss_pred c-------cHHHHHHHHHhc
Confidence 4 446677777654
No 304
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0068 Score=63.64 Aligned_cols=91 Identities=8% Similarity=0.012 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1776 NKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVADRGRS 1850 (1935)
Q Consensus 1776 ~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~-p~~~~~~~~~~~a~le~~~g~~e~Ar~ 1850 (1935)
...+++.|++.+...+.+.++.++|+-.+.+. +++++..+|+..++.. |. .+.+.++.+|..+++.|++++|+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-chHHHHHHHHHHHHHccCHHHHHH
Confidence 45677788888877778899999999999886 5668999999999987 42 235899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHH
Q 000173 1851 MFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1851 ife~al~~~Pk~~dlw~ 1867 (1935)
.|+++|+..|.+.....
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999999877544
No 305
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.82 E-value=0.0055 Score=59.25 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGV---ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+.+|..+|+.++-.++ .++|+.+|+++|+.+|++...++.++..+++.|++++|...|++++.
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6999999999975554 79999999999999999999999999999999999999999999998
No 306
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0011 Score=90.04 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=60.0
Q ss_pred CCEEEEEEEEEecCeEEEEECC-CeEEEeeCCccC--ccc---c--------cC----cccCccCCCEEEEEEEEeeCC-
Q 000173 762 NSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE- 822 (1935)
Q Consensus 762 G~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls--~~~---~--------~~----~~~~f~~Gq~V~~~V~~vd~e- 822 (1935)
|..+.|+|++++++|+||.+.+ |+.||+|.++++ +++ . .+ ....|++||.|+|+|.++|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999997 999999999997 332 1 11 346799999999999999974
Q ss_pred --CCeEEEeec
Q 000173 823 --TGRITLSLK 831 (1935)
Q Consensus 823 --~~rl~LSlk 831 (1935)
++||.||||
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 389999986
No 307
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.78 E-value=0.0011 Score=88.49 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=52.5
Q ss_pred CEEEEEEEEEecCeEEEEECC-CeEEEeeCCccC--ccc---c--------cC----cccCccCCCEEEEEEEEeeCC--
Q 000173 763 SVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAV--DGQ---R--------AD----LSKTYYVGQSVRSNILDVNSE-- 822 (1935)
Q Consensus 763 ~~~~G~V~~i~~~G~fV~f~~-gl~Glv~~s~ls--~~~---~--------~~----~~~~f~~Gq~V~~~V~~vd~e-- 822 (1935)
..+.|+|++++++|+||.+.+ |+.||+|.++++ +++ . .+ ....|++||.|+|+|+++|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 789999999999999999998 999999999995 332 1 12 257799999999999999988
Q ss_pred -CCeEEEeec
Q 000173 823 -TGRITLSLK 831 (1935)
Q Consensus 823 -~~rl~LSlk 831 (1935)
++||.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 699999986
No 308
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.55 E-value=0.022 Score=63.17 Aligned_cols=112 Identities=13% Similarity=0.257 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHc--C----HHHHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1792 HSCKVWLRRVQRLLKQ--Q----QEGVQAVVQRALLSLPRHKH-------IKFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1792 ~~~~vw~~~~~~l~~~--~----~e~A~~ll~ralk~~p~~~~-------~~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
+...+|+.|+.+.... . -..-..+++||++.+..... +++|+.||.+ .+.++.+|.-+...
T Consensus 70 DPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~ 143 (223)
T 4aez_C 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH 143 (223)
T ss_dssp CTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC
Confidence 4455566666555554 1 01134556666655543211 4566666653 13444555555443
Q ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 000173 1859 Y--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEK 1911 (1935)
Q Consensus 1859 ~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~ 1911 (1935)
- -+...+|..||.++...|++.+|..+|+.++....-| ...+-.+|-.|+.
T Consensus 144 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P--~~rL~~~~~~F~~ 196 (223)
T 4aez_C 144 HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP--FLRFQQKYQQFTH 196 (223)
T ss_dssp TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS--HHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc--HHHHHHHHHHHHH
Confidence 2 2345556666666666666666666666666522222 2234455555443
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.48 E-value=0.017 Score=60.30 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHc
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKN---GVADRGRSMFEGILSEYPK---------RTDLWSIYLDQEIRL 1876 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~---g~~e~Ar~ife~al~~~Pk---------~~dlw~~ya~~e~k~ 1876 (1935)
...++..|+..|.....+..+.+|..|..+...+ |. ..-..++|++++.+.+ -..+|..|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 3557788999999887777789999999988743 44 3366889999877543 245899999983
Q ss_pred CCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1877 g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
+.++.+|..+...+.-.+.+ .+|..|..+.+..|+.+.|..||+++++
T Consensus 82 ---~dp~~if~~L~~~~IG~~~A-lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSS-PLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHCCCcHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33899999999888887888 7999999999999999999999999876
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.47 E-value=0.038 Score=61.28 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhc----CCCHHHHHHHHHHHHHc---CC--hHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQY----CDPKKVHLALLGLYERT---EQ--NKLADELLYKMIKKFKHS---------CKVWLRRVQRLL 1805 (1935)
Q Consensus 1744 e~a~~vferAl~~----~~~~~v~~~l~~i~~~~---~~--~~~A~el~~~~~k~~~~~---------~~vw~~~~~~l~ 1805 (1935)
+..+..|+++++. .++..+|..|+.-...+ |. -..-..+++++++.|.+. .++|+.|+.+
T Consensus 52 ~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~-- 129 (223)
T 4aez_C 52 QKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY-- 129 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc--
Confidence 3345555555543 34557777776644332 11 123456777777776432 6778888873
Q ss_pred HcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 000173 1806 KQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRT-DLWSIYLDQEIR 1875 (1935)
Q Consensus 1806 ~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~-dlw~~ya~~e~k 1875 (1935)
.+.++++|.-+...-=...+..+|..||.++...|++.+|..+|+.+++..-.=. .|...|..|..+
T Consensus 130 ---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 130 ---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp ---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 2456677877777665666778999999999999999999999999988764433 356666666544
No 311
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.40 E-value=0.025 Score=55.70 Aligned_cols=77 Identities=9% Similarity=0.068 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 000173 1794 CKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP-----RHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1794 ~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p-----~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+.-.+.+|..++.. +++.|..-|+.|++..+ ......++..+|..+++.|+++.|...++++++..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34445566666666 66666666666666541 2234567777777777777777777777777777777766655
Q ss_pred HHH
Q 000173 1868 IYL 1870 (1935)
Q Consensus 1868 ~ya 1870 (1935)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 544
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.36 E-value=0.025 Score=60.02 Aligned_cols=122 Identities=12% Similarity=0.208 Sum_probs=79.6
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHc--C--HH-HHHHHHHHHHHhCCCCCh-------HHHHHHHHHHHHHcCCHHHH
Q 000173 1783 LYKMIKKF--KHSCKVWLRRVQRLLKQ--Q--QE-GVQAVVQRALLSLPRHKH-------IKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1783 ~~~~~k~~--~~~~~vw~~~~~~l~~~--~--~e-~A~~ll~ralk~~p~~~~-------~~~~~~~a~le~~~g~~e~A 1848 (1935)
|+..+..+ .+...+|+.|+.+.... . .+ .-..+++||++.+..... +.+|+.||.+. + .+
T Consensus 6 fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~---~p 79 (164)
T 2wvi_A 6 FEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N---EP 79 (164)
T ss_dssp HHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S---CH
T ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C---CH
Confidence 44444333 35677888888887775 1 11 235678888887654322 57888888763 3 36
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 000173 1849 RSMFEGILSEY--PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKS 1912 (1935)
Q Consensus 1849 r~ife~al~~~--Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~ 1912 (1935)
+.+|..+...- -+...+|..||.++...|++.+|..+|..++... ......+-.+|-.|+.+
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~--A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK--AEPLERLQSQHRQFQAR 143 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHH
Confidence 66777776542 3456778888888888888888888888888833 33344567777776654
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.03 E-value=0.025 Score=59.92 Aligned_cols=108 Identities=6% Similarity=0.051 Sum_probs=83.9
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHH---cCCHH-HHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHH
Q 000173 1814 AVVQRALLSLPRHKHIKFISQTAILEFK---NGVAD-RGRSMFEGILSEYPKR---------TDLWSIYLDQEIRLGDVD 1880 (1935)
Q Consensus 1814 ~ll~ralk~~p~~~~~~~~~~~a~le~~---~g~~e-~Ar~ife~al~~~Pk~---------~dlw~~ya~~e~k~g~~e 1880 (1935)
..|+..|.....+..+.+|..|..+... .|..+ .-..++|++++.+-++ ..+|..|+++. +
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~ 77 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------N 77 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------S
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------C
Confidence 4577777665556668999999998764 23322 2367899999886442 44899999984 3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000173 1881 LIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1881 ~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle 1928 (1935)
.++.+|..+.....-.+-+ .||..|..+.+..|+...|..||+++++
T Consensus 78 ~p~~if~~L~~~~IG~~~A-lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLA-QFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788999998877887778 7999999999999999999999999876
No 314
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.90 E-value=0.025 Score=70.74 Aligned_cols=84 Identities=8% Similarity=0.072 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhCCC---CChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPR---HKHI---KFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSIYLDQE 1873 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~---~~~~---~~~~~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d---lw~~ya~~e 1873 (1935)
++++|..+|+++|..... ..|+ ..+..+|.++..+|++++|..+|+++|..+ |.+.+ .++.++.++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 788999999999885321 2233 567788888889999999999999998652 44444 478888888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 000173 1874 IRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~ 1891 (1935)
..+|++++|..+|++|+.
T Consensus 393 ~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 999999999999999887
No 315
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.81 E-value=0.029 Score=70.24 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=69.1
Q ss_pred HcCChHHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCChH---HHHHHH
Q 000173 1772 RTEQNKLADELLYKMIKKFK-----HS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHKHI---KFISQT 1835 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~-----~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~~~---~~~~~~ 1835 (1935)
..|+|++|..+|++++.+.. ++ ...+.+++..|..+ ++++|..+|+++|.. ++. .|+ ..+.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHH
Confidence 35789999999999998652 33 45677899999999 999999999999875 332 233 578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 000173 1836 AILEFKNGVADRGRSMFEGIL 1856 (1935)
Q Consensus 1836 a~le~~~g~~e~Ar~ife~al 1856 (1935)
|.++..+|++++|..+|++|+
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 999999999999999999985
No 316
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.60 E-value=0.054 Score=53.19 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSEY-------PKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKM 1899 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~~-------Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~ 1899 (1935)
.-...+|..++..|++++|...|+.|++.. +.+.+++..++..+.+.|+++.|..++++++. +.|...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 456788999999999999999999999874 34688999999999999999999999999998 666655
No 317
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.32 E-value=0.13 Score=64.43 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=70.4
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCC---CCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPR---HKH---IKFISQTAILEFKNGVADRGRSMFEGILSEY-----PKRTD---LWSI 1868 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~---~~~---~~~~~~~a~le~~~g~~e~Ar~ife~al~~~-----Pk~~d---lw~~ 1868 (1935)
+..+ ++++|..+|+++|..... ..| ..++..+|.++..+|++++|..+++++|..+ |.+.+ .++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3344 889999999999975322 233 3678888888999999999999999998653 44444 5888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1869 YLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1869 ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
++.++..+|++++|..+|++|+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999997
No 318
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.94 E-value=0.04 Score=64.07 Aligned_cols=71 Identities=8% Similarity=0.030 Sum_probs=60.9
Q ss_pred CCCCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1465 ~~~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
-.++||+|-|+|+++....+.|.|.. ...|++|.+++. ...++....|++||.|.|+|++++ ....+.|++
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s-~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~-~~~~~eLsc 194 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGG-SEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVAN-KDMEPEMVC 194 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSS-SSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECC-TTSCCEEEC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECC-CceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcC-CCCceEEEe
Confidence 35899999999999999999999975 688999999875 334567889999999999999998 456788887
No 319
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.76 E-value=0.12 Score=64.67 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=68.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHHc-CHHHHHHHHHHHHHh----CCCCChH---HHH
Q 000173 1769 LYERTEQNKLADELLYKMIKKFK-----HS---CKVWLRRVQRLLKQ-QQEGVQAVVQRALLS----LPRHKHI---KFI 1832 (1935)
Q Consensus 1769 i~~~~~~~~~A~el~~~~~k~~~-----~~---~~vw~~~~~~l~~~-~~e~A~~ll~ralk~----~p~~~~~---~~~ 1832 (1935)
-+.+.+++++|.++|++++.+.. .+ ..++.+++..|..+ ++++|..+++++|.. +|.. |+ ..+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-HPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-CHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-ChHHHHHH
Confidence 34567888999999999887642 22 55677788888888 999999999988864 3332 33 567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 000173 1833 SQTAILEFKNGVADRGRSMFEGILSEY 1859 (1935)
Q Consensus 1833 ~~~a~le~~~g~~e~Ar~ife~al~~~ 1859 (1935)
.++|.++..+|++++|..+|++++...
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 788888889999999999999988764
No 320
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.68 E-value=0.046 Score=63.56 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcccCCccccCCCCcEEEEEEEEEeCCCCEEEEEEe
Q 000173 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1935)
Q Consensus 1376 lk~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~vd~~~~ri~lSlk 1448 (1935)
.++||+|-|+|+++....+.|+|+....|.++++++. ...++.+..|++||.|.|+|++++. .+.++||.-
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 4789999999999999999999999999999999876 3457788899999999999999984 567888773
No 321
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.62 E-value=0.14 Score=51.71 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADR---GRSMFEGILSEY-P-KRTDLWSIYLDQEIRLGDVDLIR 1883 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~---Ar~ife~al~~~-P-k~~dlw~~ya~~e~k~g~~e~ar 1883 (1935)
...+++.|.+++...+.. ..+.+.||..+.+..++.. |..+++.++... | .+-+..+.++-.+.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~~~~s--~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444433222 3444455554444443322 555555555444 3 23344444444555555555555
Q ss_pred HHHHHHHh
Q 000173 1884 GLFERAIS 1891 (1935)
Q Consensus 1884 ~lferal~ 1891 (1935)
.+++.+|.
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 322
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.19 E-value=3.5 Score=50.30 Aligned_cols=171 Identities=10% Similarity=0.077 Sum_probs=106.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCH-HHH-----
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK-KVH----- 1763 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~-~v~----- 1763 (1935)
+.++..+.+.++.++.+++......-.+.-.-..-..+-..++++.....+ +.+.-.++...+++-.... ..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA-GTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777776665443221110000001223334443333322 3444455555555433221 333
Q ss_pred -HHHHHHHHHcCChHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCC---C--CChHH
Q 000173 1764 -LALLGLYERTEQNKLADELLYKMIKKFKH------SCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLP---R--HKHIK 1830 (1935)
Q Consensus 1764 -~~l~~i~~~~~~~~~A~el~~~~~k~~~~------~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p---~--~~~~~ 1830 (1935)
.+++.+|...++|.+|.+++.++.+.... ..+++..-++++... ++.+++.+|.+|.+... . .-...
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 37899999999999999999999876532 245566677777777 99999999998876431 1 11235
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Q 000173 1831 FISQTAILEF-KNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1831 ~~~~~a~le~-~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
+...-|.+++ ..+++..|...|-.++..+..
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 6666677888 799999999999999877644
No 323
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.18 E-value=0.37 Score=48.79 Aligned_cols=95 Identities=8% Similarity=0.026 Sum_probs=78.6
Q ss_pred HcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHcCCHH
Q 000173 1772 RTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSL-PRHKHIKFISQTAILEFKNGVAD 1846 (1935)
Q Consensus 1772 ~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~-p~~~~~~~~~~~a~le~~~g~~e 1846 (1935)
.......+++.|++....-+.+...-++||-.+.+. +..++..+|+..++.. |. ..-...+.+|..+++.|+++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHH
Confidence 344567889999999887778999999999999988 4455888899888775 31 22488999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHH
Q 000173 1847 RGRSMFEGILSEYPKRTDLWS 1867 (1935)
Q Consensus 1847 ~Ar~ife~al~~~Pk~~dlw~ 1867 (1935)
+|+..++.+|+..|.+..+..
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999877643
No 324
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.59 E-value=1.5 Score=53.49 Aligned_cols=92 Identities=10% Similarity=-0.061 Sum_probs=42.0
Q ss_pred HHHHHHHHc-CHHHHHHHHHHHHHhCCC---C-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C-C--CHHHH
Q 000173 1799 RRVQRLLKQ-QQEGVQAVVQRALLSLPR---H-KHIKFISQTAILEFKNGVADRGRSMFEGILSEY----P-K--RTDLW 1866 (1935)
Q Consensus 1799 ~~~~~l~~~-~~e~A~~ll~ralk~~p~---~-~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~----P-k--~~dlw 1866 (1935)
+++.+++.. ++.+|.+++.+.++.+.. . ..++++..-.++++..++..+++.+|.++.+.. | . ...+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 345555555 555555555555554432 1 112444444555555555555555555554321 1 1 11133
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHH
Q 000173 1867 SIYLDQEI-RLGDVDLIRGLFERAI 1890 (1935)
Q Consensus 1867 ~~ya~~e~-k~g~~e~ar~lferal 1890 (1935)
..-+.+++ ..+++..|...|-.+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 33444444 4555555555554443
No 325
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.77 E-value=2.1 Score=57.61 Aligned_cols=166 Identities=14% Similarity=-0.049 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000173 1690 IKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGL 1769 (1935)
Q Consensus 1690 ~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i 1769 (1935)
...+.++...+..+.|..+.+... .-+.+....| ..+.|.++ .+..+....|..++.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~----------------~~f~~~l~~~--~~~~A~~~----~~~~~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD----------------QKFELALKVG--QLTLARDL----LTDESAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH----------------HHHHHHHHHT--CHHHHHHH----HTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc----------------hheehhhhcC--CHHHHHHH----HHhhCcHhHHHHHHHH
Confidence 566677777888777766553221 1123445667 34666554 3445667888888888
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGR 1849 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar 1849 (1935)
+.+.++++.|.++|.++- +++.+..+|.. ... .+.+..++......|+++.|.
T Consensus 691 al~~~~~~~A~~~y~~~~--------------------d~~~l~~l~~~-----~~~--~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAH--------------------DLESLFLLHSS-----FNN--KEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHTTCHHHHHHHHHHHT--------------------CHHHHHHHHHH-----TTC--HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHcc--------------------ChhhhHHHHHH-----cCC--HHHHHHHHHHHHHcCchHHHH
Confidence 888888888888888763 12333222222 011 233444445445555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHHHHHcCCHH
Q 000173 1850 SMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKK--MKFLFKKYLEYEKSVGEEE 1917 (1935)
Q Consensus 1850 ~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~--~k~l~~~yl~~E~~~G~~e 1917 (1935)
.+|.++ .-+...++++.+.++.++|..+-++ ..|.. +..+...|.+.....|..+
T Consensus 744 ~~~~~~--------g~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 744 NAYWIA--------GDIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp HHHHHH--------TCHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHc--------CCHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchh
Confidence 554432 1122334555556666666665554 33333 4455555555555556543
No 326
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.45 E-value=2.4 Score=57.17 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-
Q 000173 1729 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ- 1807 (1935)
Q Consensus 1729 ~ayl~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~- 1807 (1935)
...+.+....+ ..+.|.++.+ ... ....++.+.++++.|.++.+. .++...|..+|+.++++
T Consensus 633 ~~~~~~l~~~~--~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 633 TKIARFLEGQE--YYEEALNISP-------DQD---QKFELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHTT--CHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC--ChHHheecCC-------Ccc---hheehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcC
Confidence 44455556667 3355544332 221 113455678999999888533 36889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFE 1887 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfe 1887 (1935)
+++.|.++|.++ .+ |.....++...|+.+....+-+.+... .. +.....++++.|++++|..+|.
T Consensus 696 ~~~~A~~~y~~~-----~d-----~~~l~~l~~~~~~~~~~~~~~~~a~~~-~~----~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 696 NFKLAIEAFTNA-----HD-----LESLFLLHSSFNNKEGLVTLAKDAETT-GK----FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp CHHHHHHHHHHH-----TC-----HHHHHHHHHHTTCHHHHHHHHHHHHHT-TC----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----cC-----hhhhHHHHHHcCCHHHHHHHHHHHHHc-Cc----hHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999987 12 334455555688888777665555442 22 2333445667899999999987
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHcCCHH----HHHHHHHHHH
Q 000173 1888 RAISLSLPPKKMKFLFKKYLEYEKSVGEEE----RIEYVKQKAM 1927 (1935)
Q Consensus 1888 ral~~~~~pk~~k~l~~~yl~~E~~~G~~e----~a~~v~~rAl 1927 (1935)
.+- -|...+.+-+.++..+ .+.+.+...+
T Consensus 761 ~~~-----------~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L 793 (814)
T 3mkq_A 761 KSQ-----------RFSEAAFLGSTYGLGDNEVNDIVTKWKENL 793 (814)
T ss_dssp HTT-----------CHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HcC-----------ChHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 622 2566667777888655 4444444444
No 327
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.16 E-value=1.6 Score=57.65 Aligned_cols=58 Identities=5% Similarity=-0.020 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1831 FISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1831 ~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
+...-|.|+...|+++-|..+-.+++...|.....|..++..|+..|+++.|.-.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4455566777788888888888888888888888888888888888888887766654
No 328
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.70 E-value=1.1 Score=45.44 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1829 IKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+..-+.||..+.+..+ ..+|..+++.+++..|. +-+.|+.++--+.+.|++++|+.+.++++.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555554443 33555666666655552 345555555556666666666666666665
No 329
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.48 E-value=2.7 Score=56.64 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 000173 1791 KHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSL--PRHKHIKFISQTAILEFKNGVADRGRSMFEGILSE-YPKRTDLW 1866 (1935)
Q Consensus 1791 ~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~--p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~-~Pk~~dlw 1866 (1935)
......+..++..|.+. +.++|.++|.++-... .-...+..|..+..-+.+.|+.++|+.+|+..... ..-+.-.+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34456788899999999 9999999998765321 01122588999999999999999999999998765 23356678
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 000173 1867 SIYLDQEIRLGD-VDLIRGLFERAISLSLPPKKMKFLFKKYLE 1908 (1935)
Q Consensus 1867 ~~ya~~e~k~g~-~e~ar~lferal~~~~~pk~~k~l~~~yl~ 1908 (1935)
+.+++-+.+.|. .+.|..+|+......+.|+.. ++...+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~v--tY~~ll~ 244 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL--FTAVLLS 244 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHH--HHHSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChh--hcccccC
Confidence 888888899887 478999999999988888764 5554554
No 330
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.44 E-value=22 Score=44.18 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCchhH
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSE-Y---PK--RTDLWSIYLDQEIRLGDVDLIRGLFERAIS----LSLPPKKM 1899 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~-~---Pk--~~dlw~~ya~~e~k~g~~e~ar~lferal~----~~~~pk~~ 1899 (1935)
.+...+|.+++..|++.+|..++..+... + ++ ..++|..-++++...+|+.+|+.++.++.. ...+|.-.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 45566667777777777777777666532 1 11 133555556666666777777776666532 11222211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000173 1900 KFLFKKYLEYEKSVGEEERIEYVKQKAM 1927 (1935)
Q Consensus 1900 k~l~~~yl~~E~~~G~~e~a~~v~~rAl 1927 (1935)
-.++..++.+....+++.+|-..|..+.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1233333344444455555554444443
No 331
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.24 E-value=4.2 Score=41.84 Aligned_cols=71 Identities=7% Similarity=0.055 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 000173 1793 SCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTD 1864 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~d 1864 (1935)
+...-++|+-.+.+. +..++..+++..+...|... -+..+.+|.-+++.|++++||...+.+|+..|.+..
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~-RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 444445555444444 33444455555555444321 244555555555555555555555555555555533
No 332
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=88.06 E-value=3.1 Score=56.04 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCHHHHHH
Q 000173 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQ-----YCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-FKHSCKVWLR 1799 (1935)
Q Consensus 1726 ~lW~ayl~le~~~g~~~~e~a~~vferAl~-----~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~-~~~~~~vw~~ 1799 (1935)
..+.++++.+-+.| ..+.|.++|+++-+ ..|+-..|..+++-|.+.|+.++|.++|++|... +..+.-.|..
T Consensus 128 ~TynaLIdglcK~G--~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 128 QRLLAFFKCCLLTD--QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHT--CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45778888888888 56888988876543 3566688889999999999999999999888765 3567778888
Q ss_pred HHHHHHHc-C-HHHHHHHHHHHHHhC
Q 000173 1800 RVQRLLKQ-Q-QEGVQAVVQRALLSL 1823 (1935)
Q Consensus 1800 ~~~~l~~~-~-~e~A~~ll~ralk~~ 1823 (1935)
++..+-+. + .++|.++|+.|...-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88887777 4 578888888888764
No 333
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.90 E-value=8.4 Score=48.08 Aligned_cols=172 Identities=11% Similarity=0.020 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCC-
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ----YCDP- 1759 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~-i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~----~~~~- 1759 (1935)
..++..++..+++.|++.+|..+....... ...-+..+++.+|+.-+.++...++ ..+|+.+++++.. ..++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d--~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD--YSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhcccCCcH
Confidence 467789999999999999999999887653 3333456778999999999999995 4999999998753 2222
Q ss_pred H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC--CCHHHHHHH---HH-HHHHc--CHHHHHHHHHHHHHhCCCCCh
Q 000173 1760 K---KVHLALLGLYERTEQNKLADELLYKMIKKFK--HSCKVWLRR---VQ-RLLKQ--QQEGVQAVVQRALLSLPRHKH 1828 (1935)
Q Consensus 1760 ~---~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~--~~~~vw~~~---~~-~l~~~--~~e~A~~ll~ralk~~p~~~~ 1828 (1935)
. .++..++.++...++|.+|...|..+...+. .+..-|... +- +.+-. ..+. ..++.+..+ .+....
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~-~~ll~~~~~-~~~~~~ 292 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQ-NDLIHKIQN-DNNLKK 292 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTT-HHHHHSHHH-HSSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHhh-cccccc
Confidence 2 7778888899999999999999999987662 344444321 11 11111 1111 112222222 223334
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCC
Q 000173 1829 IKFISQTAILEFKN--GVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1829 ~~~~~~~a~le~~~--g~~e~Ar~ife~al~~~Pk 1861 (1935)
++.+..++..+... .+++.....|+..+..+|.
T Consensus 293 l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 293 LESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp HHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred cHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 56666666666543 3677777777777766553
No 334
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.12 E-value=11 Score=40.45 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHc-CHHHHHHHHHHH
Q 000173 1793 SCKVWLRRVQRLLKQ-QQEGVQAVVQRA 1819 (1935)
Q Consensus 1793 ~~~vw~~~~~~l~~~-~~e~A~~ll~ra 1819 (1935)
+...|..++...+.+ +++-|.+.|+++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 444455555544444 454444444443
No 335
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.06 E-value=3.2 Score=42.18 Aligned_cols=88 Identities=6% Similarity=0.004 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 000173 1777 KLADELLYKMIKKFKHSCKVWLRRVQRLLKQ----QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMF 1852 (1935)
Q Consensus 1777 ~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~----~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~if 1852 (1935)
...++.|++=+ .-..++..-++||-.+.+. +..++..+++..++..|... -+.++.+|.-+++.|++++|+...
T Consensus 24 ~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-Rd~LYyLAvg~yklgdY~~Ar~y~ 101 (134)
T 3o48_A 24 EILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYV 101 (134)
T ss_dssp HHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34455554422 3345889999999989887 56688899999999887442 489999999999999999999999
Q ss_pred HHHHHhCCCCHHHH
Q 000173 1853 EGILSEYPKRTDLW 1866 (1935)
Q Consensus 1853 e~al~~~Pk~~dlw 1866 (1935)
+.+|+..|.+..+-
T Consensus 102 d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 102 DTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHTTCTTCHHHH
T ss_pred HHHHhhCCCCHHHH
Confidence 99999999997653
No 336
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.64 E-value=5.6 Score=40.92 Aligned_cols=85 Identities=13% Similarity=0.023 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV---ADRGRSMFEGILSEYPK-RTDLWSIYLDQEIRLGDVDLIRG 1884 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~---~e~Ar~ife~al~~~Pk-~~dlw~~ya~~e~k~g~~e~ar~ 1884 (1935)
....++-|.+-+. .....+..+.||..+.+..+ ..+|..+++.++...|. +-+..+.++--+.+.|++++||.
T Consensus 22 L~~lr~qY~~E~~---~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~ 98 (144)
T 1y8m_A 22 LEILRQQVVSEGG---PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKR 98 (144)
T ss_dssp HHHHHHHHHHTTS---TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHhcc---CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHH
Confidence 4455555555422 13446899999999998775 56899999999999994 56777888888999999999999
Q ss_pred HHHHHHhcCCCchh
Q 000173 1885 LFERAISLSLPPKK 1898 (1935)
Q Consensus 1885 lferal~~~~~pk~ 1898 (1935)
+.+++|+ ..|.+
T Consensus 99 y~d~lL~--~eP~n 110 (144)
T 1y8m_A 99 YVDTLFE--HERNN 110 (144)
T ss_dssp HHHHHHH--TCCCC
T ss_pred HHHHHHh--cCCCc
Confidence 9999999 54443
No 337
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.38 E-value=4 Score=43.10 Aligned_cols=25 Identities=4% Similarity=-0.104 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
++-+..+..+++.++.+.|..+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3444444444455555555554443
No 338
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=83.38 E-value=1.4 Score=55.14 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=47.0
Q ss_pred CCCcEEEeEEEEEeeceEEEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1467 ~~G~~v~G~V~~v~~~G~FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
++|+.+.|.| |++. +..|++|++++..+ -.....|+.||.|+++|.++|+.+++|.+..
T Consensus 402 ~~g~~f~g~v---------v~l~--~~~glV~v~~l~~d--~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVV---------VDRR--GAQATLLIPDLAFD--VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEE---------EEEE--TTEEEEEEGGGTEE--EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEE---------EEEe--CcEEEEEECCCCeE--EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 6788888865 4454 35899999999765 2334679999999999999999999998754
No 339
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.39 E-value=8.9 Score=46.91 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHcCChHHHHHHHHHHHHhcCCC--H----HHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCC
Q 000173 1771 ERTEQNKLADELLYKMIKKFKHS--C----KVWLRRVQRLLKQQQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGV 1844 (1935)
Q Consensus 1771 ~~~~~~~~A~el~~~~~k~~~~~--~----~vw~~~~~~l~~~~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~ 1844 (1935)
...++.+.|.+.+.+++..|... . .-|..- .+..|+... ..+...++..+...|+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~-----------~r~~l~~~~--------~~a~~~~~~~~l~~g~ 186 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP-----------FATALVEDK--------VLAHTAKAEAEIACGR 186 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHH-----------HHHHHHHHH--------HHHHHHHHHHHHHTTC
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHH-----------HHHHHHHHH--------HHHHHHHHHHHHHCCC
Confidence 34688999999999999887422 1 113221 122222221 2445667888889999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000173 1845 ADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1845 ~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lferal~ 1891 (1935)
+++|...+++++..+|-+..+|..++..+...|+...|...|+++-.
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
No 340
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.30 E-value=5.9 Score=49.25 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----CH-
Q 000173 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----PK- 1760 (1935)
Q Consensus 1686 ~~lW~~y~~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~~----~~- 1760 (1935)
..++..++.++++.|++++|.++|.++...... ...++++|+..+.++..++++ ..+...+++|-.... +.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~--~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQ--LYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHhhhcCCCHHH
Confidence 346788999999999999999999999875443 346789999999999999954 999999999976542 21
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 000173 1761 --KVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1935)
Q Consensus 1761 --~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~ 1791 (1935)
.+....+.++...++|..|...|-.++..|.
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 3444445556678999999999999988774
No 341
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.51 E-value=10 Score=40.00 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 000173 1830 KFISQTAILEFKNGVADRGRSMFEGILSE 1858 (1935)
Q Consensus 1830 ~~~~~~a~le~~~g~~e~Ar~ife~al~~ 1858 (1935)
.++..||+.+|..+++-+|...|+++|+.
T Consensus 64 ~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 64 QLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666543
No 342
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=79.71 E-value=3.2 Score=46.20 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred cCCCCCEEEEEEEEEecCceEEEeCCCeEEeecCCCCccc-cccCCC-----------CCCCCCCEEEEEEEEEe
Q 000173 495 DVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPG-----------KKFKVGAELVFRVLGVK 557 (1935)
Q Consensus 495 ~l~~G~~v~g~V~~v~~~G~~V~l~~~v~g~vp~~hls~~-~~~~p~-----------~~fkvG~~v~~rVL~v~ 557 (1935)
.-.+|+++.|+|+.+++.|+.+-+.+-++.+||..+|.+- .....+ ..-++|++|++||..+.
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~ 200 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVH 200 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEE
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEE
Confidence 3567999999999999998888777789999999988421 111110 11237999999999993
No 343
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.34 E-value=9.4 Score=50.48 Aligned_cols=110 Identities=6% Similarity=-0.024 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH--HHc-CChHHHHHHHHHHHHhc------------------CCCHHHHHHHHH
Q 000173 1744 EAVVKVFQRALQYCDPKKVHLALLGLY--ERT-EQNKLADELLYKMIKKF------------------KHSCKVWLRRVQ 1802 (1935)
Q Consensus 1744 e~a~~vferAl~~~~~~~v~~~l~~i~--~~~-~~~~~A~el~~~~~k~~------------------~~~~~vw~~~~~ 1802 (1935)
+.|...|++..+..|...++++.+.+. .+. .+--+|..+..++++.. +....+...-+.
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 556666777666666544444333322 111 22334555555554321 011223444566
Q ss_pred HHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1803 RLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGI 1855 (1935)
Q Consensus 1803 ~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~a 1855 (1935)
|++.. +++-|.++-++|..+.|.. ...|..+|..|...|++|.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPse--F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDS--FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchh--hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 77777 8888888888888888877 588888888888888888887665444
No 344
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=76.91 E-value=6.2 Score=43.91 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=50.1
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcc------------cCccCCCEEEEEEEEeeCCCCe
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLS------------KTYYVGQSVRSNILDVNSETGR 825 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~------------~~f~~Gq~V~~~V~~vd~e~~r 825 (1935)
.+|+++.|+|.++++.|+.+-..|-+..++|...+..+..-++. +.-++|+.|+.||.+++..++-
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~~ 205 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRV 205 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCCE
Confidence 36999999999999988887778888899999998643221111 1224799999999999875543
No 345
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.55 E-value=43 Score=35.86 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=83.8
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c-CH
Q 000173 1732 FNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLK-Q-QQ 1809 (1935)
Q Consensus 1732 l~le~~~g~~~~e~a~~vferAl~~~~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~-~-~~ 1809 (1935)
+.+..+.| +.+.|.++.+.. +....|..++......|+++-|.++|+++-. ... ..|++. . +.
T Consensus 12 F~LAL~lg--~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~-----L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYG--NLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDK-----LSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTT--CHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHH-----HHHHHHHHTCH
T ss_pred HHHHHhcC--CHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHH-----HHHHHHHhCCH
Confidence 45667788 458888876654 6789999999999999999999999988742 122 122222 2 66
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1810 EGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1810 e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
+...++-+.|.... . +...-+.++-.|+++++..+|.+. .+ |---+.+...+|-.+.|..+.+.+
T Consensus 77 e~L~kla~iA~~~g--~-----~n~af~~~l~lGdv~~~i~lL~~~-----~r---~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE--D-----FGSMLLNTFYNNSTKERSSIFAEG-----GS---LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT--C-----HHHHHHHHHHHTCHHHHHHHHHHT-----TC---HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc--c-----HHHHHHHHHHcCCHHHHHHHHHHC-----CC---hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 66665555554432 1 122223345579999999998764 22 333334445578888888887764
No 346
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.32 E-value=1.1e+02 Score=39.75 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHhCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 000173 1808 QQEGVQAVVQRALLSLPRHK--HIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1808 ~~e~A~~ll~ralk~~p~~~--~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~l 1885 (1935)
+.+.|..+|.+.-...+-.. ...++..+|.-.+..+...++...+.+.....+ +..+..-++.+.++.|+.+.|...
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888887765433321 123333334333444535566677777655443 344444455667788999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 000173 1886 FERAISLSLPPKKMKFLFKKYLE-YEKSVGEEERIEYVKQKAME 1928 (1935)
Q Consensus 1886 feral~~~~~pk~~k~l~~~yl~-~E~~~G~~e~a~~v~~rAle 1928 (1935)
|+++-. -.... .-|.-|+. .....|+.+.++.+|+++..
T Consensus 308 ~~~l~~--~~~~~--~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPM--EAKEK--DEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCT--TGGGS--HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccc--ccccc--HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 987443 11112 23444443 23557999999998888764
No 347
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.76 E-value=7.3 Score=48.39 Aligned_cols=119 Identities=11% Similarity=0.053 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc-CHHHHHH
Q 000173 1743 EEAVVKVFQRALQYCD----PKKVHLALLGLYERTEQNKLADELLYKMIKKF---KHSCKVWLRRVQRLLKQ-QQEGVQA 1814 (1935)
Q Consensus 1743 ~e~a~~vferAl~~~~----~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~---~~~~~vw~~~~~~l~~~-~~e~A~~ 1814 (1935)
.+...+..+.+.+.+- ....+..++.+|.+.|++++|.++|.++.... ....++|+..++..+.. ++..|..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~ 189 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE 189 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444455555554332 13788999999999999999999999988765 35578888888888888 9999999
Q ss_pred HHHHHHHhCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 000173 1815 VVQRALLSLPRHKHI----KFISQTAILEFKNGVADRGRSMFEGILSEYPK 1861 (1935)
Q Consensus 1815 ll~ralk~~p~~~~~----~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk 1861 (1935)
.+.+|-.......++ .+....|..+...+++..|...|-.++..+..
T Consensus 190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 999986654333222 33344455566788999999999888877654
No 348
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.73 E-value=13 Score=42.51 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=80.9
Q ss_pred HHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 000173 1804 LLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLI 1882 (1935)
Q Consensus 1804 l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~a 1882 (1935)
+++. .+++|.+.++..++..|.+ ......|.++++-.|+.+||.+-++-+.+.+|...-.-..|.++-. -++.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~d--a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~----aE~~ 80 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK----AAQA 80 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH----HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH----HHHH
Confidence 4555 8999999999999999998 5899999999999999999999999999999997665444433321 1122
Q ss_pred HH-HHHHHHhcCCCchhHHHHHHHHH-HH--HHHcCCHHHHHHHHHHHHHHHH
Q 000173 1883 RG-LFERAISLSLPPKKMKFLFKKYL-EY--EKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1883 r~-lferal~~~~~pk~~k~l~~~yl-~~--E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
|. +|..--.-.+.-... . |...+ .. ....|+.+.|..+.++|.+...
T Consensus 81 R~~vfaG~~~P~~~g~~~-~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENE-E-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHTTSCCCEECCCSCH-H-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCCCCCCCCH-H-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 21 111100001111112 2 33333 22 3346999999999999988654
No 349
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.62 E-value=23 Score=44.31 Aligned_cols=138 Identities=11% Similarity=0.170 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--Hhcc---cc-chhhHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHH
Q 000173 1687 FVWIKYMAFMLSMADVEKARSIAERAL--QTIN---IR-EENEKLNIWVAYFNLENEYGNPPE--------EAVVKVFQR 1752 (1935)
Q Consensus 1687 ~lW~~y~~~~l~~~e~dkAr~v~erAl--~~i~---~~-ee~Ekl~lW~ayl~le~~~g~~~~--------e~a~~vfer 1752 (1935)
.+|+-..-|.+..+.+++|.++....+ ..+. -| -|.-...+|.-|..++...|.... ...+..+-.
T Consensus 137 y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~ 216 (523)
T 4b4t_S 137 FMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMK 216 (523)
T ss_dssp ------------------------------------------------------------------CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHH
Confidence 333334445566677777766665443 1111 11 111112577766666655553100 123444444
Q ss_pred HHhcC----CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC---HHHHH----HHHHHHHHc-CHHHHHHHHH
Q 000173 1753 ALQYC----DP---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVWL----RRVQRLLKQ-QQEGVQAVVQ 1817 (1935)
Q Consensus 1753 Al~~~----~~---~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~---~~vw~----~~~~~l~~~-~~e~A~~ll~ 1817 (1935)
+++.. +. ..+|..++..|...+.++.|..+..++. ||.+ ..-|. .+|....-+ ++.+|.+.|.
T Consensus 217 ~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~ 294 (523)
T 4b4t_S 217 FLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYII 294 (523)
T ss_dssp HHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 55432 22 2999999999999999999999999885 6532 22233 335555555 9999999999
Q ss_pred HHHHhCCCC
Q 000173 1818 RALLSLPRH 1826 (1935)
Q Consensus 1818 ralk~~p~~ 1826 (1935)
.|+..+|..
T Consensus 295 ~A~rkap~~ 303 (523)
T 4b4t_S 295 AAIRKAPHN 303 (523)
T ss_dssp HHTSSCSCS
T ss_pred HHHHhCCcc
Confidence 999988865
No 350
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=69.42 E-value=20 Score=31.47 Aligned_cols=52 Identities=29% Similarity=0.533 Sum_probs=42.7
Q ss_pred CCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEec--ceEEEEEcCCeEEEecC
Q 000173 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK--HGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 538 ~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~--~G~~V~~~~~v~g~vp~ 615 (1935)
.+..+|++|+.|.||= ..|..+.|+|++|.. .-|+|+|+.+..-++..
T Consensus 9 ~~~~~f~vGddVLA~w------------------------------tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~ 58 (66)
T 2eqj_A 9 KPACKFEEGQDVLARW------------------------------SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLW 58 (66)
T ss_dssp CCCCCSCTTCEEEEEC------------------------------TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred cccccccCCCEEEEEE------------------------------ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEe
Confidence 4556899999998851 249999999999985 57999999999999987
Q ss_pred cccC
Q 000173 616 SELG 619 (1935)
Q Consensus 616 se~~ 619 (1935)
.+|.
T Consensus 59 kdi~ 62 (66)
T 2eqj_A 59 KDIQ 62 (66)
T ss_dssp TTEE
T ss_pred eccc
Confidence 7763
No 351
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=68.87 E-value=35 Score=41.51 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 000173 1864 DLWSIYLDQEIRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVESTL 1934 (1935)
Q Consensus 1864 dlw~~ya~~e~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~~~~ 1934 (1935)
.+...+++.+...|+++.+...+++++. ..|-+- .+|..++......|+...|.++|+++.+.+..-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E-~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYRE-PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4566778888899999999999999998 555444 5899999888999999999999999998876544
No 352
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=68.65 E-value=8.1 Score=37.81 Aligned_cols=55 Identities=9% Similarity=-0.051 Sum_probs=46.7
Q ss_pred CCcEEEEEEEEEecceEEEEEcCCeEEEecCcccCCCCC-----CC-CCCCCCCCCEEEEE
Q 000173 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPG-----CE-PSSMYHVGQVVKCR 639 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se~~~~~~-----~~-~~~~~~vGq~v~~r 639 (1935)
.|....|.|+++.+.++-|.+.+|-.+.||...|.|.+. .. +++.+++|++|.++
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 488899999999999999999888888899999987631 23 45679999999998
No 353
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=67.60 E-value=6.6 Score=39.65 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCcEEEEEEEEEecceEEEEEcCCeE--EEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCCc
Q 000173 585 DRLITHGWITKIEKHGCFVRFYNGVQ--GFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~~G~~V~~~~~v~--g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~~ 662 (1935)
.|....|+|+.+.+.+++|.|.|... --+|.+++..-+-......|.+||.|.|.--.=|.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~----------------- 76 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQ----------------- 76 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC--------------------
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCC-----------------
Confidence 49999999999999999999987644 47888888543322333579999999984321110
Q ss_pred cccccCCCCeEEEEEEEEecCcEEEEEEecC---ceeEEEeccccC
Q 000173 663 EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKG---YSKGTIPTEHLA 705 (1935)
Q Consensus 663 ~~~~~~~G~iv~g~V~~v~~~g~~V~l~~~~---~v~g~i~~~hLs 705 (1935)
.+-.=-.|+|+.+..+-..|+. .+ ...-+++..+|.
T Consensus 77 -----ep~gWw~a~I~~~kg~f~~V~y--~~~~~~~~EiV~~~rlR 115 (128)
T 3h8z_A 77 -----EPCGWWLARVRMMKGDFYVIEY--AACDATYNEIVTLERLR 115 (128)
T ss_dssp -----CCCEEEEEEEEEEETTEEEEEE--TTC----CEEECGGGEE
T ss_pred -----CcCccEEEEEEEeeCCEEEEEE--cCCCCCcceEEehhheE
Confidence 1112245788888877777775 22 344455555543
No 354
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=66.67 E-value=12 Score=36.65 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=47.8
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCCcEEEEECccCCCcc--c---CC-ccccCCCCcEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--V---ES-PEKEFPIGKLVAGR 1432 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~v~g~V~~s~lsd~~--~---~~-~~~~f~~G~~V~~k 1432 (1935)
..|+.+.+.|.++.+.++-|.+..+-.+.|+..++.|.. . +. +.+.+++|+.|.++
T Consensus 32 ~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 32 NSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 358899999999999999999988888899999999963 3 33 55679999999987
No 355
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=65.51 E-value=8.2 Score=48.29 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=45.8
Q ss_pred CCCCEEEEEEEEEecCeEEEEECCCeEEEeeCCccCcccccCcccCccCCCEEEEEEEEeeCCCCeEEEee
Q 000173 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1935)
Q Consensus 760 ~~G~~~~G~V~~i~~~G~fV~f~~gl~Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V~~vd~e~~rl~LSl 830 (1935)
..|..+.|.|+.+. +..|+++.+.+..+. .....|++||.|+|+|.++|..++++.+.+
T Consensus 402 ~~g~~f~g~vv~l~----------~~~glV~v~~l~~d~--~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDRR----------GAQATLLIPDLAFDV--QVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEEE----------TTEEEEEEGGGTEEE--EEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEEe----------CcEEEEEECCCCeEE--ecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 46888998875543 336888888887542 223579999999999999999999997765
No 356
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.20 E-value=52 Score=46.22 Aligned_cols=92 Identities=10% Similarity=-0.084 Sum_probs=49.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccc-------hhh-----------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000173 1693 MAFMLSMADVEKARSIAERALQTINIRE-------ENE-----------KLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1754 (1935)
Q Consensus 1693 ~~~~l~~~e~dkAr~v~erAl~~i~~~e-------e~E-----------kl~lW~ayl~le~~~g~~~~e~a~~vferAl 1754 (1935)
+..++..|++++|...|++|-..+.... +.. ....+...+.+..+.+.+ +-+.+..+.|+
T Consensus 849 g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~--~~vi~fa~lAi 926 (1139)
T 4fhn_B 849 ALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY--IDALEFSLLAD 926 (1139)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCC--HHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 3445677777777777777653222110 000 012344445555555543 66666666666
Q ss_pred hcCCCH------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 000173 1755 QYCDPK------KVHLALLGLYERTEQNKLADELLYKM 1786 (1935)
Q Consensus 1755 ~~~~~~------~v~~~l~~i~~~~~~~~~A~el~~~~ 1786 (1935)
+..+.. .+|..+.+.+...++|++|...+..+
T Consensus 927 ~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 927 ASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 554321 35666666666666666666555444
No 357
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=62.18 E-value=9.5 Score=38.52 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=38.4
Q ss_pred CCCEEEEEEEEEecCeEEEEECCCeE--EEeeCCccCcccccCcccCccCCCEEEEEE
Q 000173 761 PNSVVHGYVCNIIETGCFVRFLGRLT--GFAPRSKAVDGQRADLSKTYYVGQSVRSNI 816 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G~fV~f~~gl~--Glv~~s~ls~~~~~~~~~~f~~Gq~V~~~V 816 (1935)
.|..+.|+|..+.+.+++|.|.|... --+|.+++-..+-......|.+||.|.|..
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~ 71 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYS 71 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEe
Confidence 48999999999999999999988543 345555543221112225699999999953
No 358
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.88 E-value=3e+02 Score=37.17 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=99.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchhhHH--------HHHHHHHHHHHHc-CC-----CCHHHHHHHHHHHHhcCCC
Q 000173 1694 AFMLSMADVEKARSIAERALQTINIREENEKL--------NIWVAYFNLENEY-GN-----PPEEAVVKVFQRALQYCDP 1759 (1935)
Q Consensus 1694 ~~~l~~~e~dkAr~v~erAl~~i~~~ee~Ekl--------~lW~ayl~le~~~-g~-----~~~e~a~~vferAl~~~~~ 1759 (1935)
..|+.+|++++|...+-.|=..++..+..|-. .-|+.+..-...- +. ...+++..+++|.+.++-.
T Consensus 78 kvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~iv~~cl~ 157 (963)
T 4ady_A 78 KVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFERMIEKCLK 157 (963)
T ss_dssp HHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHh
Confidence 34566799999998887775555554432221 2333322211110 10 0236777788888777666
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CHHHH-HHHHHHHHHhCCCCChHHHHH
Q 000173 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-----QQEGV-QAVVQRALLSLPRHKHIKFIS 1833 (1935)
Q Consensus 1760 ~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-----~~e~A-~~ll~ralk~~p~~~~~~~~~ 1833 (1935)
.+-|...+.+.....+.+...+...++.+ .....-+.+.+.+++.. ..+.- .++|+-++..+.+.++ .-|.
T Consensus 158 hnae~~AvdLalE~erLD~Le~~vd~~~~--~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~-~dy~ 234 (963)
T 4ady_A 158 ASELKLALGIALEGYRLDIIESALKSKLD--QDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPN-CDYL 234 (963)
T ss_dssp HTCHHHHHHHHHHTTCHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSS-CCHH
T ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhhcc--ccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCc-hhHH
Confidence 66677777788888887766665554321 11122333333333322 33332 2344444433322110 2367
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 000173 1834 QTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1834 ~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g 1877 (1935)
...++..+.++.+.++.+|.+++. .++..+-++.+-.+.+.+
T Consensus 235 ~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~ 276 (963)
T 4ady_A 235 TLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSA 276 (963)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhccc
Confidence 777888889999999999999984 345555555555555443
No 359
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=56.20 E-value=18 Score=33.56 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=42.6
Q ss_pred hcCCCcEEEEEEEEEecceEEEEEc--CCeEEEecCcc-cCCCCCCCCCCCCCCCCEEEEEEEEEeCC
Q 000173 582 EATDRLITHGWITKIEKHGCFVRFY--NGVQGFAPRSE-LGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1935)
Q Consensus 582 ~~~~G~~~~g~V~~i~~~G~~V~~~--~~v~g~vp~se-~~~~~~~~~~~~~~vGq~v~~rVl~~d~~ 646 (1935)
++.+|+++.|.|. +.++-++|.+. +|.+|++--.- +..+...+.++.+ +|.+++++|+.+|.-
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 5678999999886 44555667775 47888874321 2222233334444 899999999999864
No 360
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.25 E-value=19 Score=45.05 Aligned_cols=109 Identities=13% Similarity=0.118 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHhccccchhhH-HHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000173 1682 SPNSSFVWIKYMAFMLSMADVEK----------ARSIAERALQTINIREENEK-LNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1935)
Q Consensus 1682 ~P~s~~lW~~y~~~~l~~~e~dk----------Ar~v~erAl~~i~~~ee~Ek-l~lW~ayl~le~~~g~~~~e~a~~vf 1750 (1935)
++-++.+|..|..++...+.+.. -|..+-.++++...+.+.+. ..+|..++..+..++.+ ++|..+.
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y--~qA~~lv 254 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEV--DSASDFI 254 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCS--TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcH--HHHHHHH
Confidence 34578899999999988887654 47677778877766655543 47999999999999955 9999999
Q ss_pred HHHHhcCC--CH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 000173 1751 QRALQYCD--PK----KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1935)
Q Consensus 1751 erAl~~~~--~~----~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~ 1792 (1935)
.++.--.. ++ ..++.++.++.-.++|.+|.+.|..|+.+.|.
T Consensus 255 sk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 255 SKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred hcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99841111 12 55556688999999999999999999988764
No 361
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=54.91 E-value=34 Score=29.12 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCcEEEEEEEEEecc--eEEEEEcCCeEEEecCcccC
Q 000173 585 DRLITHGWITKIEKH--GCFVRFYNGVQGFAPRSELG 619 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~~--G~~V~~~~~v~g~vp~se~~ 619 (1935)
.|..+.|+|.+|... -|+|+|+.+..-++...+|.
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 489999999999866 59999999999999888874
No 362
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=53.58 E-value=16 Score=33.64 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=45.2
Q ss_pred EEEeEEEEEeeceE-EEEEecCceeEEeeccccCcc-cccCcccccCCCCEEEEEEEEEecCCCeeEEec
Q 000173 1471 IVIGQIKRVESYGL-FITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1935)
Q Consensus 1471 ~v~G~V~~v~~~G~-FV~l~~~~v~Gl~h~sels~~-~~~~~~~~~~~Gd~V~~~Il~id~~~~ri~lsl 1538 (1935)
.+.|.|.+..+.|. .|.+++ +..=+||++---.. ++ ..-+||.|.+.+...|..+++|....
T Consensus 15 e~~G~Vik~l~n~~f~V~l~n-G~~~~c~i~GK~Rk~~I-----~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELEN-GHKVLAHISGKMRQHYI-----RILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETT-SCEEEEEECHHHHHTTC-----CCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEcCCCEEEEEeCC-CCEEEEEeCcceecCCc-----cCCCCCEEEEEECccCCCcEEEEEEc
Confidence 47899999987665 477765 55668998743222 21 26799999999888888888887643
No 363
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.95 E-value=3.7e+02 Score=31.41 Aligned_cols=20 Identities=10% Similarity=-0.095 Sum_probs=12.0
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 000173 1911 KSVGEEERIEYVKQKAMEYV 1930 (1935)
Q Consensus 1911 ~~~G~~e~a~~v~~rAle~v 1930 (1935)
-..|+...|..+|..-.+..
T Consensus 199 L~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 199 LFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHTTBHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHH
Confidence 34567777777766555444
No 364
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=49.41 E-value=48 Score=30.08 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=35.5
Q ss_pred EEeEEEEEee-ceE-EEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEE
Q 000173 1472 VIGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526 (1935)
Q Consensus 1472 v~G~V~~v~~-~G~-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~ 1526 (1935)
.+|+|+...+ .|. ||.-++++-. ++|+|.|...- .+.+||+|...+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------CCCCCCEEEEEEEe
Confidence 5799988753 444 7776654566 99999997542 58999999998764
No 365
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=47.84 E-value=54 Score=37.44 Aligned_cols=116 Identities=16% Similarity=0.007 Sum_probs=64.9
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHH
Q 000173 1770 YERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRG 1848 (1935)
Q Consensus 1770 ~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~A 1848 (1935)
..+.++.++|.+.....++..|.+.+.-..|.++|--. ++++|..-++-+.+..|... ..-..|.+ .=+.|+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~--~~a~~yr~----lI~aE~~ 80 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL--PGASQLRH----LVKAAQA 80 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH--HHHHHHHH----HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh--HHHHHHHH----HHHHHHH
Confidence 34567777777777777777777777777777776666 77777777777777776652 11112211 1122333
Q ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHh
Q 000173 1849 RSMFEGILS--EYPKRTDLWSIYLDQE---IRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1849 r~ife~al~--~~Pk~~dlw~~ya~~e---~k~g~~e~ar~lferal~ 1891 (1935)
|+-+-..-+ ..+....-|...+... ...|+.+.|..+-++|.+
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 332211100 1122233354433322 245777777777777765
No 366
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=46.47 E-value=70 Score=32.40 Aligned_cols=117 Identities=23% Similarity=0.263 Sum_probs=60.3
Q ss_pred cEEEEEEEEEecc----cEEEEcCCCcEEEEeccccCchhhcccccccccCCCCCcccCCCEEEEEEEEeecCcccccee
Q 000173 135 MKLWGVVAEVNEK----DLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIGKR 210 (1935)
Q Consensus 135 ~~~lG~V~~i~~~----~l~vslp~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~V~~~~~~~~~~~~~ 210 (1935)
-++-|.|.++.+. .+.+.++++..=...+|.-|-. . --+.+|+.+++.|.. .
T Consensus 10 N~l~g~V~~~~~~~~~~~v~l~~~~~~~l~~~it~~s~~---~-----------~~l~~g~~v~~~irp----------~ 65 (145)
T 1h9m_A 10 NVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESAR---S-----------LQLAAGKEVVAVVKA----------P 65 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEESSSCEEEEEEEHHHHH---H-----------TTCCTTCEEEEEECG----------G
T ss_pred eEEEEEEEEEEcCCceEEEEEEECCCCEEEEEeCHHHHH---h-----------cCCCCCCEEEEEEcc----------c
Confidence 4678899988776 5667776543323333322111 0 013457666665521 1
Q ss_pred EEEEeechhhhhcCCCcccccCCcEEEEEEEeeecce----EEEEe-cCCcceecccCCCCCCCCCCcCCCCcEEEEEEE
Q 000173 211 KIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHG----YILHF-GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1935)
Q Consensus 211 ~i~LS~~p~~vn~~l~~~~l~~g~~l~~~V~svedhG----~ild~-Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~v~ 285 (1935)
.|.|+..|. +........+.|.|.+++..| |.+++ |-..+...++...+. . ..+.+|+.+.+.+.
T Consensus 66 ~v~l~~~~~-------~~~~s~~N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~-~--l~l~~G~~V~~~~k 135 (145)
T 1h9m_A 66 WVLLMTDSS-------GYRLSARNILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA-E--LGLKPGASASAVIK 135 (145)
T ss_dssp GCEEESCCT-------TCCCSCSEEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-H--TTCCTTCEEEEEEC
T ss_pred eEEEeccCC-------CCCccceEEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh-h--cCCCCCCEEEEEEc
Confidence 233433220 000111246999999999887 44555 212244455443221 1 15778888887763
No 367
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=44.92 E-value=63 Score=30.42 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=42.2
Q ss_pred CCCCcEEEeEEEEEeeceE-EEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEEE
Q 000173 1466 LHVGDIVIGQIKRVESYGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527 (1935)
Q Consensus 1466 ~~~G~~v~G~V~~v~~~G~-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~i 1527 (1935)
........|+|+... .|. ||.-++++-+=++|+|.|... ...+.+||+|...+..-
T Consensus 13 ~s~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 13 TSAALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp SSCCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEEC
T ss_pred CCcccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEEC
Confidence 344467899999985 665 887766457899999998754 24678999999987654
No 368
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=40.07 E-value=85 Score=29.16 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=45.1
Q ss_pred ccccccCCcceEEEEEEEEeeeeEEEeecCCcceEEEeeeecCC--CCCCC-cccccCCCeEEEEEeccC
Q 000173 963 EASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN--TQKFP-QKQFLNGQSVIATVMALP 1029 (1935)
Q Consensus 963 ~~~~~l~~G~~v~g~V~~i~~~~v~vs~~~~~~~~g~~~~~~~~--~~~~~-~~~f~~Gq~v~a~V~~~~ 1029 (1935)
.+..+|.+|++..|+|- ++++-+.|.++++.++.+++- ..+| .++.. -++=-+|.+|.++|..+|
T Consensus 25 ~~~~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~-dYvnv~~dr~~klkkkLVGKtIkVqVIRvD 92 (102)
T 1jjg_A 25 TSAMDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILL-DYLNYRQDTLDRLKERLVGRVIKTRVVRAD 92 (102)
T ss_dssp SCCCCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEEC-TTCCSSCCCCCHHHHHHTTCEEEEEEEEEC
T ss_pred eeccccCCCceEeeEEE-EeCCEEEEEecCCCCceeeee-hhhhhhHHHHHHHHHHhcCceEEEEEEEec
Confidence 35568999999999974 566777888987778888752 2223 21111 122348999999999876
No 369
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=39.16 E-value=83 Score=28.85 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=39.0
Q ss_pred cEEEeEEEEEee-ceE-EEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEEE
Q 000173 1470 DIVIGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526 (1935)
Q Consensus 1470 ~~v~G~V~~v~~-~G~-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il~ 1526 (1935)
....|+|+...+ .|. ||.-++++-+=++|+|.|.......--..+.+||.|...+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 347899998853 444 677665467889999999654111112457899999988754
No 370
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=37.77 E-value=60 Score=29.42 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=35.5
Q ss_pred EEEEEEEEe---cceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 589 THGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1935)
Q Consensus 589 ~~g~V~~i~---~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1935)
..|+|+... .||.+..-.++-. |+|.|.+... . .+..||.|.+.+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~-----g-~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANP-----D-LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSG-----G-GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccC-----C-CCCCCCEEEEEEEe
Confidence 579999886 4677665545566 9999999632 1 68899999998874
No 371
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=35.58 E-value=1.2e+02 Score=27.85 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=39.2
Q ss_pred cEEEEEEEEEe---cceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 587 LITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1935)
Q Consensus 587 ~~~~g~V~~i~---~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1935)
....|+|+... .||.+..-.++-.-|+|.|.+.......--..+..||.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 34679999986 467776555578999999999532000011357899999998865
No 372
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=35.11 E-value=45 Score=31.35 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=38.9
Q ss_pred CCcEEEEEEEEEec-ceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEE
Q 000173 585 DRLITHGWITKIEK-HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIM 641 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~-~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl 641 (1935)
.++...|+|+...+ ||.+-.-.++-.-|+|.|.+... -..+..||.|.+.+.
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEEEE
Confidence 57888999999874 45554433468999999999532 246889999998775
No 373
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=34.58 E-value=3e+02 Score=30.39 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=84.3
Q ss_pred ccCCCEEEEEEEEEEecCCeEEEEechh---hcc-----------ccccccccCCCCCE-----------EEEEEEEEec
Q 000173 457 YKEGSCVRVRILGFRHLEGLATGILKAS---AFE-----------GLVFTHSDVKPGMV-----------VKGKVIAVDS 511 (1935)
Q Consensus 457 ~~vG~~~~~rV~~~~~~d~~~~~s~k~~---~~~-----------~~~~~~~~l~~G~~-----------v~g~V~~v~~ 511 (1935)
+.+|+.+.+.|..+......++--.... .++ ........+.+|++ ..|.|.++.+
T Consensus 13 l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~~~ 92 (226)
T 4b9x_A 13 FTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEILP 92 (226)
T ss_dssp CCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEECS
T ss_pred cCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEECC
Confidence 7899999999999987766554322211 111 11112234556765 4667888876
Q ss_pred Cc-eEEEeCC-CeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchh-hHHhhhhhcCCCcE
Q 000173 512 FG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRLI 588 (1935)
Q Consensus 512 ~G-~~V~l~~-~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~-~~~~~~~~~~~G~~ 588 (1935)
.| +.|.+-+ |-...||..++-. -.++-.--+.+-++|++-.+... -..|. .....|.++..|..
T Consensus 93 ~~~~~V~~vDyGn~~~v~~~~l~~---l~~~f~~lP~qA~~c~L~~v~p~----------~~~w~~ea~~~f~~l~~~k~ 159 (226)
T 4b9x_A 93 SGNVKVHFVDYGNVEEVTTDQLQA---ILPQFLLLPFQGMQCWLVDIQPP----------NKHWTKEATARFQACVVGLK 159 (226)
T ss_dssp SSEEEEECTTTCCEEEEEGGGEEC---CCGGGSSSCBCCEEEEESSEECS----------SSSCCHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEEecCCEEEEEHHHhcc---ChHHHcccccceEEEEEecEECC----------CCCCCHHHHHHHHHHHCCCe
Confidence 65 5666654 6777888665532 11221123788899987655211 11222 23445667777889
Q ss_pred EEEEEEEEecceEEEEEc
Q 000173 589 THGWITKIEKHGCFVRFY 606 (1935)
Q Consensus 589 ~~g~V~~i~~~G~~V~~~ 606 (1935)
+.+.|..+.+.|+.|+++
T Consensus 160 l~~~V~~~~~~~~~V~L~ 177 (226)
T 4b9x_A 160 LQARVVEITANGVGVELT 177 (226)
T ss_dssp EEEEEEEECSSCEEEEEE
T ss_pred EEEEEEEEeCCeEEEEEE
Confidence 999999999999999887
No 374
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=32.94 E-value=41 Score=32.27 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=39.7
Q ss_pred CCcEEEeEEEEEeeceE-EEEEecCceeEEeeccccCcccccCcccccCCCCEEEEEEE
Q 000173 1468 VGDIVIGQIKRVESYGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1525 (1935)
Q Consensus 1468 ~G~~v~G~V~~v~~~G~-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~V~~~Il 1525 (1935)
......|+|+.. ..|. ||.-++++-+=++|+|.|... ...+.+||+|...+.
T Consensus 15 ~~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEEEC
T ss_pred CCcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEEEE
Confidence 356689999988 6565 777665457889999999754 245789999998873
No 375
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=32.57 E-value=3e+02 Score=38.56 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000173 1809 QEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQEIRLGDVDLIRGLFER 1888 (1935)
Q Consensus 1809 ~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~e~k~g~~e~ar~lfer 1888 (1935)
.+...+.|...++-..... .++......-.+.++++-+|.+++.++++..|++ ++|...+++...+| .+....++++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d-~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~~-~~~~~~~~~~~~l~-w~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDAND-SKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRTR-DHFVELAAINGALG-HEHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTS-TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCC-ceeehhHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHcC-CHHHHHHHHh
Confidence 3444455555555433221 1222222222336788888888888888877755 67777777766665 5566666666
Q ss_pred HHhcCCC
Q 000173 1889 AISLSLP 1895 (1935)
Q Consensus 1889 al~~~~~ 1895 (1935)
.+...+|
T Consensus 1342 ~~~~~~p 1348 (1354)
T 3lxu_X 1342 MMITAFP 1348 (1354)
T ss_dssp HHHHHSC
T ss_pred hhhhhCc
Confidence 6543344
No 376
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.54 E-value=1.6e+02 Score=25.82 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=30.5
Q ss_pred CCcEEEEEEEEEec--ceEEEEEcCCeEEEecCcccC
Q 000173 585 DRLITHGWITKIEK--HGCFVRFYNGVQGFAPRSELG 619 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~--~G~~V~~~~~v~g~vp~se~~ 619 (1935)
.|..+.|+|++|.. .-|+|.|+.+..-++...+|.
T Consensus 22 DGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 58 (68)
T 2e5p_A 22 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 58 (68)
T ss_dssp TSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred CCcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccc
Confidence 48999999999984 459999999999999888874
No 377
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=30.30 E-value=1.3e+02 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=35.9
Q ss_pred ccCCcCcCcEE--EEEEEEEecccEEEEcCCCcEEEEeccccCchhhcccccccccCCCCCcccCCCEEEEE
Q 000173 127 TLKNISAGMKL--WGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCI 196 (1935)
Q Consensus 127 ~~k~l~~G~~~--lG~V~~i~~~~l~vslp~~l~G~v~~~~is~~~~~~~~~~~~~~~l~~~f~~Gq~v~~~ 196 (1935)
....+.+|++| ||||.+-+.--|++. ..+.+..|.++-+=+. | ..++|.||.+.
T Consensus 14 ~lp~~~~G~KVRFLGCV~sY~tg~L~Le-~~~~~v~VDV~lvL~~-------------l--~~~vGeWvNVv 69 (105)
T 3kf6_B 14 QINDCKDGQKLRFLGCVQSYKNGILRLI-DGSSSVTCDVTVVLPD-------------V--SIQKHEWLNIV 69 (105)
T ss_dssp GGGGSCTTCEEEEEEEEEEEETTEEEEE-ETTEEEEEECTTSCCS-------------S--CCCTTCEEEEE
T ss_pred hccCCCCCCEEEEEEEeeeeccEEEEEc-cCCcEEEEEHHHhhch-------------h--eeecccEEEEE
Confidence 34566788764 999999995556666 4455555555443333 3 57899999875
No 378
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=30.24 E-value=3.8e+02 Score=37.43 Aligned_cols=121 Identities=9% Similarity=-0.075 Sum_probs=82.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCC------------------
Q 000173 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPR------------------ 1825 (1935)
Q Consensus 1765 ~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~------------------ 1825 (1935)
.++..+...+.++.|+++. .-.+.++-.-+..|..++.. ++++|..+|++|-.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~----~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHH----HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHh----hhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 3444555666776665532 23345555556677777777 888888888876322211
Q ss_pred ---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000173 1826 ---HKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKR-----TDLWSIYLDQEIRLGDVDLIRGLFERA 1889 (1935)
Q Consensus 1826 ---~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~-----~dlw~~ya~~e~k~g~~e~ar~lfera 1889 (1935)
......|...+.+..+.+.++.+...-..|++..+.+ .++|..........|+++.|-..+-+.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 1123567777778888999999999999999876542 338999999999999999887666543
No 379
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=30.19 E-value=1.7e+02 Score=25.93 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=42.2
Q ss_pred CCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEecceEEEEEcCCeEEEecCcc
Q 000173 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSE 617 (1935)
Q Consensus 538 ~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~~G~~V~~~~~v~g~vp~se 617 (1935)
.|...|.+|+-|-||- ..|..+.|+|+.....-|+|+|..+-.-++...+
T Consensus 11 ~pa~~~~~geDVL~rw------------------------------~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kd 60 (69)
T 2xk0_A 11 SPAVTYALQEDVFIKC------------------------------NDGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDK 60 (69)
T ss_dssp CCCCCCCTTCEEEEEC------------------------------TTSCEEEEEEEEECSSCEEEEETTCCEEEECTTT
T ss_pred CcccccccCCeEEEEe------------------------------cCCCEEEEEEEecCCceEEEEecCCcceeeeHHH
Confidence 4567899999887752 2488899999888888999999999888888777
Q ss_pred cC
Q 000173 618 LG 619 (1935)
Q Consensus 618 ~~ 619 (1935)
|.
T Consensus 61 i~ 62 (69)
T 2xk0_A 61 LR 62 (69)
T ss_dssp EE
T ss_pred HH
Confidence 63
No 380
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=29.78 E-value=5e+02 Score=27.95 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=84.8
Q ss_pred cccCCCEEEEEEEEEEecCCeEEEEec-hh--hcc-----------ccccccccCCCCCE-----------EEEEEEEEe
Q 000173 456 KYKEGSCVRVRILGFRHLEGLATGILK-AS--AFE-----------GLVFTHSDVKPGMV-----------VKGKVIAVD 510 (1935)
Q Consensus 456 ~~~vG~~~~~rV~~~~~~d~~~~~s~k-~~--~~~-----------~~~~~~~~l~~G~~-----------v~g~V~~v~ 510 (1935)
.+.+|+.+.+.|+.+......+.--.. +. .++ ........+++|++ ..|+|+++.
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~~ 91 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 378999999999999887665543222 11 111 11112234556664 467788887
Q ss_pred cCc-eEEEeCC-CeEEeecCCCCccccccCCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchh-hHHhhhhhcCCCc
Q 000173 511 SFG-AIVQFPG-GVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKL-AILSSYAEATDRL 587 (1935)
Q Consensus 511 ~~G-~~V~l~~-~v~g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~-~~~~~~~~~~~G~ 587 (1935)
+.+ +.|.+-+ |-...||..++-. -.++-.--+.+-++|++-.+... -..|. .....|.++..|.
T Consensus 92 ~~~~~~V~~vDyG~~~~v~~~~l~~---l~~~f~~lP~qA~~c~L~~v~p~----------~~~w~~ea~~~f~~l~~~k 158 (201)
T 4b9w_A 92 PSGNVKVHFVDYGNVEEVTTDQLQA---ILPQFLLLPFQGMQCWLVDIQPP----------NKHWTKEATARFQACVVGL 158 (201)
T ss_dssp TTSCEEEEETTTCCEEEECGGGEEE---CCGGGGSSCBCCEEEEESSEECS----------SSSCCHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEEccCCEEEEEHHHhcc---ChHhHcccchhhEEEEEcCEEcC----------CCCCCHHHHHHHHHHHCCC
Confidence 665 6676654 6777888665532 11211123678899987655211 11122 2334566666788
Q ss_pred EEEEEEEEEecceEEEEEc
Q 000173 588 ITHGWITKIEKHGCFVRFY 606 (1935)
Q Consensus 588 ~~~g~V~~i~~~G~~V~~~ 606 (1935)
.+.+.|..+.+.++.|.++
T Consensus 159 ~l~~~V~~~~~~~~~V~L~ 177 (201)
T 4b9w_A 159 KLQARVVEITANGVGVELT 177 (201)
T ss_dssp CEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEEEeCCEEEEEEE
Confidence 8999999999999888886
No 381
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=28.95 E-value=3.1e+02 Score=27.31 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=30.1
Q ss_pred ceEEEEEEEEeeee----EEEeecCCcceEEEeeeecCCCCCCCcccccCCCeEEEEEec
Q 000173 972 QTVNAIVEIVKENY----LVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMA 1027 (1935)
Q Consensus 972 ~~v~g~V~~i~~~~----v~vs~~~~~~~~g~~~~~~~~~~~~~~~~f~~Gq~v~a~V~~ 1027 (1935)
..+.|+|..+...+ +.|.++++..+...++...+. ...+.+|+.|.+.+..
T Consensus 82 N~l~g~V~~i~~~G~~~~v~v~~~~g~~l~a~it~~~~~-----~l~l~~G~~V~~~~k~ 136 (145)
T 1h9m_A 82 NILTGTVKTIETGAVNAEVTLALQGGTEITSMVTKEAVA-----ELGLKPGASASAVIKA 136 (145)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHHH-----HTTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEEcHHHHh-----hcCCCCCCEEEEEEcc
Confidence 46899999986543 455554333444444432211 1247889999987654
No 382
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=28.20 E-value=1.2e+02 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=23.8
Q ss_pred HHHHHHHhccCCCCcHHHHHHHHHcCCCCHHHHHH
Q 000173 1657 RAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIK 1691 (1935)
Q Consensus 1657 ~~~e~~~~~~~~~~a~~~ferll~~~P~s~~lW~~ 1691 (1935)
..+.+..+++...+..+..++....+|-+...|.-
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ssni~E~NW~I 46 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFI 46 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCCccccceee
Confidence 33444466777777777888887777776777753
No 383
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.97 E-value=2.9e+02 Score=28.22 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHcCCHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-------------------
Q 000173 1697 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC------------------- 1757 (1935)
Q Consensus 1697 l~~~e~dkAr~v~erAl~~i~~~ee~Ekl~lW~ayl~le~~~g~~~~e~a~~vferAl~~~------------------- 1757 (1935)
+..|.+++..++..+..+.-+..+ .=|+-. |+--... =+..-++++..=++.
T Consensus 18 ildG~v~qGveii~k~~~ssni~E-----~NW~IC-NiiD~a~---C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n 88 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSE-----YNWFIC-NLLESID---CRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN 88 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHH-----HTHHHH-HHHHHCC---HHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT
T ss_pred HHhhhHHHHHHHHHHHcCCCCccc-----cceeee-ecchhhc---hhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc
Confidence 566889999999988887665433 235421 1101111 112222222222221
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHH
Q 000173 1758 DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALL 1821 (1935)
Q Consensus 1758 ~~~~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk 1821 (1935)
-..+..-..++++...++.+...+++...++..+.++.+.+.++..|.+. +..+|.+++.+|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 11122222234445556666666666555544444566666666666666 66666666666654
No 384
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=27.32 E-value=2.9e+02 Score=24.10 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=38.2
Q ss_pred EEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329 (1935)
Q Consensus 1263 v~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~ 1329 (1935)
.+|+|....+.++.=|+.-..+-.-++|++.+... ....+..|+.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~---------------g~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGE---------------GFKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSS---------------SCCCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHcccc---------------CCCCCCCCCEEEEEEEE
Confidence 36889888876555677776678899999998432 22346789999998764
No 385
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.30 E-value=2.3e+02 Score=26.49 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCCC-cEEEEECccCCCcccCCccccCCCCcEEEEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~~-v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kVl~ 1435 (1935)
...+...|+|+...+.-=||.-..+ -+.|||++.|... ...+.+||.|...+..
T Consensus 14 s~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~-----~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 14 SAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN-----LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp SCCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC-----TTTCCTTCCEEEEEEE
T ss_pred CcccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc-----cCCCCCCCEEEEEEEE
Confidence 3446789999999632246665544 8999999998864 2456799999998754
No 386
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=27.28 E-value=2e+02 Score=28.43 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=10.1
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000173 1875 RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~ 1891 (1935)
..|++++|..+|..++.
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34666666666666554
No 387
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.83 E-value=1.6e+02 Score=30.80 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=44.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHh
Q 000173 1835 TAILEFKNGVADRGRSMFEGILSEYPKR---TDLWSIYLD-Q-----EIRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1835 ~a~le~~~g~~e~Ar~ife~al~~~Pk~---~dlw~~ya~-~-----e~k~g~~e~ar~lferal~ 1891 (1935)
.+..+|..|++=+|..+||.+....+.. .++|.-+++ + ..+.|+..-|+.+|.+++.
T Consensus 38 ~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 38 HGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445566699999999999998876543 457777777 3 3467999999999999986
No 388
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=26.71 E-value=2.5e+02 Score=25.01 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=37.5
Q ss_pred EEEEEEEEEEcCcCeEEEEeCC-ceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 1262 IVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329 (1935)
Q Consensus 1262 iv~g~V~~v~~~~~g~~V~l~~-~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~ 1329 (1935)
...|+|....+.++.=|+.-.. +-.-++|++.+... ....+..|+.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~---------------g~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN---------------GFKTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS---------------SCCCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc---------------cCcCCCCCCEEEEEEEE
Confidence 4679999887654444566544 47899999998431 23346799999998865
No 389
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=26.58 E-value=1.6e+02 Score=27.24 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYEKSVGEEERIEYVKQKAMEYVE 1931 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E~~~G~~e~a~~v~~rAle~v~ 1931 (1935)
-+.|++++|..+|..++. .|..++.+|.. ...-..+..++.+|+.
T Consensus 30 D~~g~y~eAl~lY~~aie----------~l~~alk~e~d---~~~k~~ir~K~~eY~~ 74 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE----------VLAQLVSLYRD---GSTAAIYEQMINEYKR 74 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH----------HHHHHHHHSTT---SSTHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH----------HHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 356778888888877775 56666666521 1122234555555554
No 390
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.57 E-value=1.3e+02 Score=28.23 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCCCEEEEEEEEEeeceEEEEeCC-CcEEEEECccCCCcccCCccccCCCCcEEEEEE
Q 000173 1377 SPNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRV 1433 (1935)
Q Consensus 1377 k~G~~v~G~V~~v~~~G~fV~l~~-~v~g~V~~s~lsd~~~~~~~~~f~~G~~V~~kV 1433 (1935)
..++...|+|+...+.-=||.-.. +-+.|+|++.|...+ ..+..||.|...+
T Consensus 14 ~~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~~-----~~L~~G~~V~F~~ 66 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDV-----DSLELGDMVEYSL 66 (88)
T ss_dssp SSCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSCT-----TTCCTTCEEEECC
T ss_pred CCCCceeEEEEEEECCccEEecCCCCceEEEEEhhhcccc-----CcCCCCCEEEEEE
Confidence 357889999999975324666544 589999999998652 4567999999865
No 391
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=25.87 E-value=1.1e+02 Score=31.70 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=41.0
Q ss_pred CCCcEEEEEEEEEe---cceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEE
Q 000173 584 TDRLITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSS 643 (1935)
Q Consensus 584 ~~G~~~~g~V~~i~---~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~ 643 (1935)
..|....|+|+... .||++..-.++-.-|+|++.+.-. ..+..||.|.+.|...
T Consensus 58 ~~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fev~~~ 114 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE------YVPVEGDEVTYKMCSI 114 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEEEEEC
T ss_pred ccCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC------CcCCCCCEEEEEEEec
Confidence 35888899999986 467665544558899999999521 2688999999988753
No 392
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.25 E-value=1.5e+02 Score=26.44 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=37.0
Q ss_pred EEEEEEEEEe---cceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 588 ITHGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1935)
Q Consensus 588 ~~~g~V~~i~---~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1935)
...|+|+... .||.+..-.++-.-|+|.+.+... .-..+..||.|.+.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCS----SCCCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccc----cCcCCCCCCEEEEEEEE
Confidence 3579999886 467665544557899999999532 11357899999998875
No 393
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.65 E-value=1.8e+02 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 000173 1874 IRLGDVDLIRGLFERAISLSLPPKKMKFLFKKYLEYE 1910 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~~~~~pk~~k~l~~~yl~~E 1910 (1935)
-+.|++++|..+|..++. .|..++.+|
T Consensus 22 D~~g~y~eAl~lY~~aie----------~l~~~lk~e 48 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE----------VLSQIIVLY 48 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH----------HHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHH----------HHHHHHHHC
Confidence 356777777777777665 555666555
No 394
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=24.49 E-value=3.4e+02 Score=24.96 Aligned_cols=17 Identities=0% Similarity=-0.021 Sum_probs=11.0
Q ss_pred HcCCHHHHHHHHHHHHh
Q 000173 1875 RLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1875 k~g~~e~ar~lferal~ 1891 (1935)
..|+++.|..+|..++.
T Consensus 25 ~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 45666666666666665
No 395
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=24.31 E-value=2.3e+02 Score=29.87 Aligned_cols=73 Identities=18% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhC----------------CCCHHHHHHHHHHHHHcC
Q 000173 1816 VQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGIL--SEY----------------PKRTDLWSIYLDQEIRLG 1877 (1935)
Q Consensus 1816 l~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al--~~~----------------Pk~~dlw~~ya~~e~k~g 1877 (1935)
|.|+|-.+.....+....--+..+.+..++..|...++.++ ... .+..-.++.|+++..+.|
T Consensus 49 Y~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g 128 (242)
T 3kae_A 49 YTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSG 128 (242)
T ss_dssp HHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhc
Q ss_pred CHHHHHHHHHH
Q 000173 1878 DVDLIRGLFER 1888 (1935)
Q Consensus 1878 ~~e~ar~lfer 1888 (1935)
+.++|...|.+
T Consensus 129 ~r~EaI~y~~~ 139 (242)
T 3kae_A 129 YREEGIGHYVR 139 (242)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHhhhHhhh
No 396
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=24.04 E-value=1.3e+02 Score=26.67 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=35.9
Q ss_pred EEEEEEEe---cceEEEEEcCCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 590 HGWITKIE---KHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1935)
Q Consensus 590 ~g~V~~i~---~~G~~V~~~~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~ 642 (1935)
.|+|+... .||.+..-.++-.-|+|.|.+... .-..+..||.|.+.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~----g~~~l~~G~~V~f~~~~ 54 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINME----GFKTLKEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGG----GGSSCCTTCEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHcccc----CCCCCCCCCEEEEEEEE
Confidence 68998886 467665544568899999999521 11357899999998865
No 397
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=23.89 E-value=4.7e+02 Score=31.09 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHcCChHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHc---CHHH-HHHHHHHHHHhCCCCChHHHHHH--HHHHHHHcC
Q 000173 1771 ERTEQNKLADELLYKMIKKF-KHSCKVWLRRVQRLLKQ---QQEG-VQAVVQRALLSLPRHKHIKFISQ--TAILEFKNG 1843 (1935)
Q Consensus 1771 ~~~~~~~~A~el~~~~~k~~-~~~~~vw~~~~~~l~~~---~~e~-A~~ll~ralk~~p~~~~~~~~~~--~a~le~~~g 1843 (1935)
...+..++|.++|++..-.. ....-++.-|+....+. .|.. |..+..+++-- +.+++. -++-....|
T Consensus 114 i~~~dl~~a~~~YHklsyeikk~avll~RVYG~stRe~il~~fk~pA~~l~~~~~y~------Itv~~~~~~~~~a~~~g 187 (412)
T 2ra1_A 114 VDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTRELLRSTFKADAQALRDRLIYD------ITVAMKAREAQDAVKAG 187 (412)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTHHH------HHHHHHHHHHHHHHHTT
T ss_pred hhhccHHHHHHHhhhhhHhhhhcEEEEecccChhHHHHHHHHhhchHHHHHHHhhhH------HHHHHHHHHHHHHhccC
Confidence 57788888888888875221 12232222333332222 2222 44444444311 333333 344456889
Q ss_pred CHHHHHHHHHHHHHhCCCCHHH
Q 000173 1844 VADRGRSMFEGILSEYPKRTDL 1865 (1935)
Q Consensus 1844 ~~e~Ar~ife~al~~~Pk~~dl 1865 (1935)
++++|...+..+-+..|+-.|.
T Consensus 188 ~l~~a~~~l~~v~~~l~kv~d~ 209 (412)
T 2ra1_A 188 NLDKAKAALDQVNQYVSKVTDA 209 (412)
T ss_dssp CHHHHHHHHHHHHHHGGGCCST
T ss_pred cHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999998887775443
No 398
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.62 E-value=2.7e+02 Score=25.83 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=11.2
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 000173 1874 IRLGDVDLIRGLFERAIS 1891 (1935)
Q Consensus 1874 ~k~g~~e~ar~lferal~ 1891 (1935)
-+.|++++|..+|..++.
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 355666666666666664
No 399
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=23.27 E-value=2.5e+02 Score=25.16 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=38.1
Q ss_pred EEEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 1263 VGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329 (1935)
Q Consensus 1263 v~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~ 1329 (1935)
.+|+|....+.++.=|+.-..+-.-++|++.+... ....+..|+.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~---------------g~~~l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAK---------------GFRTLNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSS---------------SCSSCCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhcccc---------------CCCCCCCCCEEEEEEEE
Confidence 36889888876556677766678899999998432 12346789999998754
No 400
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=22.75 E-value=1.3e+02 Score=25.79 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=29.6
Q ss_pred CCCEEEEEEEEEecCe--EEEEECCCeEEEeeCCccC
Q 000173 761 PNSVVHGYVCNIIETG--CFVRFLGRLTGFAPRSKAV 795 (1935)
Q Consensus 761 ~G~~~~G~V~~i~~~G--~fV~f~~gl~Glv~~s~ls 795 (1935)
-|.-+.|+|..|...+ |+|+|+++-.-.++-.+|.
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 4889999999997775 9999999988888777664
No 401
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=22.58 E-value=3.2e+02 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=37.2
Q ss_pred EEEEEEEEEeCCCCEEEEEEecCccccccc-------ccccccCCCCCCcEEEeEEEEEe
Q 000173 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQ-------SEINNLSNLHVGDIVIGQIKRVE 1480 (1935)
Q Consensus 1428 ~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~-------~~~~~~~~~~~G~~v~G~V~~v~ 1480 (1935)
.+.+.|.+||.+.++|.|+.-+...-.|+. .....+..+++|+.|+-.+.+..
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEeC
Confidence 588999999999999888865543222211 11223788999999998887554
No 402
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=22.52 E-value=4.7e+02 Score=28.74 Aligned_cols=145 Identities=17% Similarity=0.120 Sum_probs=84.4
Q ss_pred EeecCCCCccccccCCCCCCCCCCEEEEEEEEE-eCCeEEEEEecccccchh----hHHhh-hh-------hcCC-----
Q 000173 524 ALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKL----AILSS-YA-------EATD----- 585 (1935)
Q Consensus 524 g~vp~~hls~~~~~~p~~~fkvG~~v~~rVL~v-~~~~i~ltlK~~l~~~~~----~~~~~-~~-------~~~~----- 585 (1935)
|.++...+++ -.+.+|+.+.+.|..+ ......+-+...-....+ ..+.. |. ..++
T Consensus 1 g~~~~l~~~~-------~~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~ 73 (226)
T 4b9x_A 1 GPAEALEWTW-------VEFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCC 73 (226)
T ss_dssp -----CCCCB-------CCCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEE
T ss_pred CCccceeeEE-------EEcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEE
Confidence 4455555555 2478999999999999 678888765321000001 01111 11 1122
Q ss_pred ------CcEEEEEEEEEecce-EEEEEc-CCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeC
Q 000173 586 ------RLITHGWITKIEKHG-CFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMK 657 (1935)
Q Consensus 586 ------G~~~~g~V~~i~~~G-~~V~~~-~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~ 657 (1935)
|....|.|.++.+.| +-|.|- =|-...+|.+++..-+ +.-.--+.|-++|++-++-|.+.
T Consensus 74 a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~---~~f~~lP~qA~~c~L~~v~p~~~--------- 141 (226)
T 4b9x_A 74 AFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAIL---PQFLLLPFQGMQCWLVDIQPPNK--------- 141 (226)
T ss_dssp EEETTTTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCC---GGGSSSCBCCEEEEESSEECSSS---------
T ss_pred EEECCCCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccCh---HHHcccccceEEEEEecEECCCC---------
Confidence 456678888887665 445442 2456788888885221 11011367889999877765321
Q ss_pred CCCCccc-----cccCCCCeEEEEEEEEecCcEEEEE
Q 000173 658 PTRVSED-----DLVKLGSLVSGVVDVVTPNAVVVYV 689 (1935)
Q Consensus 658 ~~~~~~~-----~~~~~G~iv~g~V~~v~~~g~~V~l 689 (1935)
.|... ..+..|..+.++|..+.++++.|.|
T Consensus 142 --~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~V~L 176 (226)
T 4b9x_A 142 --HWTKEATARFQACVVGLKLQARVVEITANGVGVEL 176 (226)
T ss_dssp --SCCHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE
T ss_pred --CCCHHHHHHHHHHHCCCeEEEEEEEEeCCeEEEEE
Confidence 23221 3445788899999999999988888
No 403
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=22.50 E-value=9.5e+02 Score=27.85 Aligned_cols=66 Identities=5% Similarity=-0.072 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------HH----hCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 000173 1826 HKHIKFISQTAILEFKNGVADRGRSMFEGI---------------LS----EYPKRTDLW-SIYLDQEIRLGDVDLIRGL 1885 (1935)
Q Consensus 1826 ~~~~~~~~~~a~le~~~g~~e~Ar~ife~a---------------l~----~~Pk~~dlw-~~ya~~e~k~g~~e~ar~l 1885 (1935)
.-|+.++..+|..+++.|++.+|+..|-.. .+ .+|...+++ ...+-.+.-.++...|+.+
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHES 210 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 356788999999998888888888876421 11 123333443 3333345567888888888
Q ss_pred HHHHHh
Q 000173 1886 FERAIS 1891 (1935)
Q Consensus 1886 feral~ 1891 (1935)
|+..+.
T Consensus 211 ~~~f~~ 216 (312)
T 2wpv_A 211 KDIFLE 216 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 404
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=22.44 E-value=3.4e+02 Score=24.79 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=37.1
Q ss_pred EEEEEEEEEeCCCCEEEEEEecCccccccc-------ccccccCCCCCCcEEEeEEEEEe
Q 000173 1428 LVAGRVLSVEPLSKRVEVTLKTSDSRTASQ-------SEINNLSNLHVGDIVIGQIKRVE 1480 (1935)
Q Consensus 1428 ~V~~kVl~vd~~~~ri~lSlk~~~~~~~~~-------~~~~~~~~~~~G~~v~G~V~~v~ 1480 (1935)
.+.+.|.+||.+.++|.|+.-+...-.|+. .....+..+++||.|+-.+.+..
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEeC
Confidence 588999999999999988875543222211 11223788999999998876553
No 405
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=22.43 E-value=3e+02 Score=25.71 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=36.7
Q ss_pred EEEEEEEEeeCCCCeEEEeecccccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEee
Q 000173 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886 (1935)
Q Consensus 811 ~V~~~V~~vd~e~~rl~LSlk~~~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~ 886 (1935)
.+.+.|.+||++.++++|+--+.....= +++-..| . .. ....+..+++|+.|...+....
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~w-paMTM~F-~---------v~-----~~~~l~~lk~Gd~V~F~~~~~~ 76 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNW-PEMTMRF-T---------IT-----PQTKMSEIKTGDKVAFNFVQQG 76 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTB-CSEEEEE-E---------CC-----TTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCC-CceEEEE-E---------cC-----ChhhhhcCCCCCEEEEEEEEeC
Confidence 5788999999999999998655422100 0000000 0 00 1123688999999999987543
No 406
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.28 E-value=2.2e+02 Score=25.64 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=41.4
Q ss_pred CCCCCCCCCCEEEEEEEEEeCCeEEEEEecccccchhhHHhhhhhcCCCcEEEEEEEEEec--ceEEEEEcCCeEEEecC
Q 000173 538 KPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEK--HGCFVRFYNGVQGFAPR 615 (1935)
Q Consensus 538 ~p~~~fkvG~~v~~rVL~v~~~~i~ltlK~~l~~~~~~~~~~~~~~~~G~~~~g~V~~i~~--~G~~V~~~~~v~g~vp~ 615 (1935)
-|...|.+|+-|-||= ..|..+.|+|++|.. .-|+|.|+.+-.-+++.
T Consensus 22 ~p~~~f~eGeDVLarw------------------------------sDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~ 71 (79)
T 2m0o_A 22 GPRPRLWEGQDVLARW------------------------------TDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLW 71 (79)
T ss_dssp SCCCCCCTTCEEEBCC------------------------------TTSCCCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCcceeccCCEEEEEe------------------------------cCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEe
Confidence 4667888888876631 348889999999974 45999999999999988
Q ss_pred cccC
Q 000173 616 SELG 619 (1935)
Q Consensus 616 se~~ 619 (1935)
.+|.
T Consensus 72 kdi~ 75 (79)
T 2m0o_A 72 KDIS 75 (79)
T ss_dssp TTBC
T ss_pred eccc
Confidence 8774
No 407
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=21.86 E-value=7.1e+02 Score=26.13 Aligned_cols=73 Identities=11% Similarity=0.271 Sum_probs=50.9
Q ss_pred cccccCccEEEEEEEEeecceeEEEeccCCceeEEEeeeecCC-ccccCCCeEEEEEEEeeccccEEEEeehhhhhhhhh
Q 000173 869 VEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAG-ATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFR 947 (1935)
Q Consensus 869 ~~~~~vG~~v~g~V~~~~~~g~~v~~~~~~~v~g~i~~~~ls~-~~~~~G~~v~~~vl~~~~~~~~v~ls~k~~l~~~~~ 947 (1935)
+...++|+..+.+|---..||-. +++..-.+|..++.+ ..+++|+.+..-
T Consensus 72 L~gm~~Ge~~~v~Ipp~~AYG~~-----~~~lv~~vp~~~f~~~~~~~~G~~~~~~------------------------ 122 (169)
T 4dt4_A 72 LLGLKVGDKTTFSLEPDAAFGVP-----SPDLIQYFSRREFMDAGEPEIGAIMLFT------------------------ 122 (169)
T ss_dssp HTTCCTTCEEEEEECGGGTTCCC-----CGGGEEEEEGGGGTTTCCCCTTCEEEEE------------------------
T ss_pred HcCCCCCCEEEEEEChHHhcCCC-----ChHHEEEeCHHHCCCcCCCCCCcEEEEE------------------------
Confidence 56778999888888766666642 224445667777754 357777666420
Q ss_pred hcchhhHHhHhhhhhccccccCCcceEEEEEEEEeeeeEEEee
Q 000173 948 EANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSL 990 (1935)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~~v~vs~ 990 (1935)
-..|+.+.|+|..|+++.|.|+|
T Consensus 123 --------------------~~~G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 123 --------------------AMDGSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp --------------------CTTSCEEEEEEEEEETTEEEEEC
T ss_pred --------------------CCCCCEEEEEEEEEcCCEEEEeC
Confidence 12377889999999999999998
No 408
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=21.85 E-value=3.3e+02 Score=24.92 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=36.6
Q ss_pred EEEEEEEEeeCCCCeEEEeecccccCCCCchhhHHHHHHHHHHHHhhccCCCcccccccccccCccEEEEEEEEee
Q 000173 811 SVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESN 886 (1935)
Q Consensus 811 ~V~~~V~~vd~e~~rl~LSlk~~~~~~~d~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~v~g~V~~~~ 886 (1935)
.+.+.|.+||++.++++|+--+.....= +++-..| . .. ....+..+++|+.|...+....
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~w-paMTM~F-~---------v~-----~~~~l~~lk~Gd~V~F~~~~~~ 68 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNW-PEMTMRF-T---------IT-----PQTKMSEIKTGDKVAFNFVQQG 68 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTB-CSEEEEE-E---------CC-----TTCEECCCCTTCEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCC-CceEEEE-E---------cc-----ChhhhhcCCCCCEEEEEEEEeC
Confidence 4788999999999999998655422100 0000000 0 00 1123688999999999987543
No 409
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.79 E-value=3.6e+02 Score=33.70 Aligned_cols=77 Identities=5% Similarity=-0.118 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 000173 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVWLRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILE 1839 (1935)
Q Consensus 1761 ~v~~~l~~i~~~~~~~~~A~el~~~~~k~~~~~~~vw~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le 1839 (1935)
...+.++++......+..|...|.+|....|.+...|..+|-....+ +.-.|.-.|-|++..... +..++.++..+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P--f~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP--FPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC--CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC--ChhHHHHHHHHH
Confidence 45566777888788889999999999999999999999999888877 888888888999866433 345555555543
No 410
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.67 E-value=3.3e+02 Score=25.61 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 000173 1877 GDVDLIRGLFERAI 1890 (1935)
Q Consensus 1877 g~~e~ar~lferal 1890 (1935)
|++++|..+|..++
T Consensus 29 g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 29 SRYQQALVCYQEGI 42 (93)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444444
No 411
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=21.18 E-value=5e+02 Score=27.92 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=80.7
Q ss_pred CCCCCCEEEEEEEEE-eCCeEEEEEecccccchh----hHHhh-hh-------hcCC-----------CcEEEEEEEEEe
Q 000173 542 KFKVGAELVFRVLGV-KSKRITVTHKKTLVKSKL----AILSS-YA-------EATD-----------RLITHGWITKIE 597 (1935)
Q Consensus 542 ~fkvG~~v~~rVL~v-~~~~i~ltlK~~l~~~~~----~~~~~-~~-------~~~~-----------G~~~~g~V~~i~ 597 (1935)
.+.+|+.+.+.|..+ ...+..+-+...-....+ ..+.. +. ..++ |....|.|.++.
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~~ 91 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 578999999999999 678888765321000001 11111 11 1122 456678888887
Q ss_pred cce-EEEEEc-CCeEEEecCcccCCCCCCCCCCCCCCCCEEEEEEEEEeCCCCEEEEEEeeCCCCCccc-----cccCCC
Q 000173 598 KHG-CFVRFY-NGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSED-----DLVKLG 670 (1935)
Q Consensus 598 ~~G-~~V~~~-~~v~g~vp~se~~~~~~~~~~~~~~vGq~v~~rVl~~d~~~~ri~lS~k~~~~~~~~~-----~~~~~G 670 (1935)
+.| +-|.|- =|-...+|.+++..-+ +.-.--+.|-++|++-++.|.+. .|... ..+..|
T Consensus 92 ~~~~~~V~~vDyG~~~~v~~~~l~~l~---~~f~~lP~qA~~c~L~~v~p~~~-----------~w~~ea~~~f~~l~~~ 157 (201)
T 4b9w_A 92 PSGNVKVHFVDYGNVEEVTTDQLQAIL---PQFLLLPFQGMQCWLVDIQPPNK-----------HWTKEATARFQACVVG 157 (201)
T ss_dssp TTSCEEEEETTTCCEEEECGGGEEECC---GGGGSSCBCCEEEEESSEECSSS-----------SCCHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEccCCEEEEEHHHhccCh---HhHcccchhhEEEEEcCEEcCCC-----------CCCHHHHHHHHHHHCC
Confidence 655 445442 2456788888884211 11011267889999877765321 23221 334578
Q ss_pred CeEEEEEEEEecCcEEEEE
Q 000173 671 SLVSGVVDVVTPNAVVVYV 689 (1935)
Q Consensus 671 ~iv~g~V~~v~~~g~~V~l 689 (1935)
..+.++|....++++.|.+
T Consensus 158 k~l~~~V~~~~~~~~~V~L 176 (201)
T 4b9w_A 158 LKLQARVVEITANGVGVEL 176 (201)
T ss_dssp CCEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEEeCCEEEEEE
Confidence 8899999999998888877
No 412
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.17 E-value=2.1e+02 Score=35.83 Aligned_cols=73 Identities=11% Similarity=-0.056 Sum_probs=47.5
Q ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000173 1798 LRRVQRLLKQ-QQEGVQAVVQRALLSLPRHKHIKFISQTAILEFKNGVADRGRSMFEGILSEYPKRTDLWSIYLDQ 1872 (1935)
Q Consensus 1798 ~~~~~~l~~~-~~e~A~~ll~ralk~~p~~~~~~~~~~~a~le~~~g~~e~Ar~ife~al~~~Pk~~dlw~~ya~~ 1872 (1935)
+.+|+..... ....|+..|.+|+...|..- ..|.++|-+....|+.-+|.-.|-|++.........+..+..+
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 3445544444 67777777777777777765 5777777777777777777777777776654455555554443
No 413
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.55 E-value=1.6e+02 Score=25.42 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=30.0
Q ss_pred CCcEEEEEEEEEec--ceEEEEEcCCeEEEecCcccC
Q 000173 585 DRLITHGWITKIEK--HGCFVRFYNGVQGFAPRSELG 619 (1935)
Q Consensus 585 ~G~~~~g~V~~i~~--~G~~V~~~~~v~g~vp~se~~ 619 (1935)
.|..+.|+|++|.. .-|+|.|+.+-+-++...+|.
T Consensus 20 DGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 56 (63)
T 2e5q_A 20 DGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQ 56 (63)
T ss_dssp TSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEEEEEEEEEecCCCEEEEEEccCceeEEEeeccc
Confidence 48899999999973 459999999999999888874
No 414
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.17 E-value=1.3e+02 Score=26.41 Aligned_cols=51 Identities=20% Similarity=0.164 Sum_probs=35.6
Q ss_pred EEEEEEEEcCcCeEEEEeCCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE
Q 000173 1264 GGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLE 1329 (1935)
Q Consensus 1264 ~g~V~~v~~~~~g~~V~l~~~~~G~v~~tel~d~~~~~~~~~~~~~~~~p~~~~~~G~~v~~~Vl~ 1329 (1935)
+|+|....+.++.=|+.-..+..-++|++.+... ....+..|+.|.+.+..
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~---------------g~~~l~~G~~V~f~~~~ 52 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEME---------------GFKTLKEGQVVEFEIQE 52 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCS---------------SCCCCCSSSEEEEEEEC
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHcccc---------------CCCCCCCCCEEEEEEEE
Confidence 5788888765545566666677888899888431 22456789999998753
Done!