Your job contains 1 sequence.
>000174
MEGETRVSDIVGGGESNQSSYWLDACEDILIDEFVNFDTSVVQDSVDNTSNQDSLSNDFF
GGIDHILDSIKNGSGLPNSNGNLLKNGSEDSTGGENHQAEGLILLSNNGSDKDGVDRKRK
LENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSKRARVS
VCKNESQYSSRGQYCSSDKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSSRKDVRDKD
FRDREPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMP
EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK
VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS
IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV
DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAV
EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG
QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDS
ENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE
DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR
VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHA
TFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGL
IHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLA
QQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVAD
ILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAELAS
LKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTDA
WTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVK
ASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTA
ESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEE
QEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINY
PVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQM
VSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDK
LGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMK
WIGIQVESDPEEVGCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPS
SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLH
VHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG
RDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYID
GVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLND
ICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAV
LLLELLNKWYS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000174
(1931 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 3475 0. 4
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 567 3.7e-169 5
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 494 2.4e-162 9
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 704 1.3e-152 4
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 426 7.2e-129 8
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 698 3.4e-124 4
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 689 9.9e-124 4
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 690 2.0e-123 4
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 689 2.0e-123 4
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 684 2.1e-123 4
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 679 2.8e-123 4
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 680 3.9e-122 4
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 686 7.1e-122 4
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 677 2.7e-121 5
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 697 6.8e-120 4
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 696 1.3e-118 4
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 388 2.4e-107 7
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 445 2.8e-92 5
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 335 2.0e-85 7
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 340 6.6e-85 4
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 391 3.8e-83 7
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 316 1.6e-82 6
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 322 2.6e-70 5
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 378 4.1e-44 3
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 455 1.6e-41 1
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 375 6.8e-37 2
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 372 1.1e-32 1
UNIPROTKB|E2RMV6 - symbol:DDX58 "Uncharacterized protein"... 262 3.5e-32 2
UNIPROTKB|F1MKU1 - symbol:DDX58 "Uncharacterized protein"... 255 1.0e-31 2
MGI|MGI:2442858 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) bo... 258 1.5e-31 2
DICTYBASE|DDB_G0294407 - symbol:helF "DEAD/DEAH box helic... 242 1.5e-31 2
UNIPROTKB|D4A8D9 - symbol:Ddx58 "Protein Ddx58" species:1... 266 1.8e-31 2
RGD|1309460 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box po... 266 2.9e-31 2
UNIPROTKB|K7GMB7 - symbol:DHX58 "Uncharacterized protein"... 232 3.2e-31 2
UNIPROTKB|F1S0P6 - symbol:DHX58 "Uncharacterized protein"... 232 5.7e-31 2
MGI|MGI:1931560 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box ... 237 2.9e-30 2
RGD|1310093 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box poly... 233 3.8e-30 2
UNIPROTKB|E1BJZ0 - symbol:IFIH1 "Uncharacterized protein"... 235 5.4e-30 2
UNIPROTKB|E2RNK0 - symbol:IFIH1 "Uncharacterized protein"... 221 2.0e-29 2
UNIPROTKB|D4AC08 - symbol:Ifih1 "Protein Ifih1" species:1... 221 3.1e-28 2
RGD|1560496 - symbol:Ifih1 "interferon induced with helic... 221 3.6e-28 2
MGI|MGI:1918836 - symbol:Ifih1 "interferon induced with h... 221 5.7e-28 2
UNIPROTKB|A2A376 - symbol:DDX58 "Probable ATP-dependent R... 235 7.4e-28 2
UNIPROTKB|B3KWW1 - symbol:DDX58 "cDNA FLJ44001 fis, clone... 235 1.3e-27 2
UNIPROTKB|O95786 - symbol:DDX58 "Probable ATP-dependent R... 235 1.7e-27 2
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 219 2.0e-27 5
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 218 2.5e-27 5
UNIPROTKB|Q9BYX4 - symbol:IFIH1 "Interferon-induced helic... 232 3.5e-27 3
ZFIN|ZDB-GENE-081104-438 - symbol:ifih1 "interferon induc... 212 6.2e-27 2
UNIPROTKB|Q96C10 - symbol:DHX58 "Probable ATP-dependent R... 217 3.3e-26 2
UNIPROTKB|F1NDV4 - symbol:IFIH1 "Uncharacterized protein"... 227 4.1e-26 2
ZFIN|ZDB-GENE-120612-3 - symbol:dhx58 "DEXH (Asp-Glu-X-Hi... 212 1.1e-25 2
ASPGD|ASPL0000054215 - symbol:dclA species:162425 "Emeric... 306 1.2e-25 1
UNIPROTKB|F5H5W6 - symbol:DDX58 "Probable ATP-dependent R... 235 2.4e-25 2
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 291 1.1e-24 2
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 201 3.1e-23 3
POMBASE|SPAC20H4.04 - symbol:fml2 "ATP-dependent 3' to 5'... 195 6.6e-23 2
WB|WBGene00008400 - symbol:drh-3 species:6239 "Caenorhabd... 204 2.2e-22 3
POMBASE|SPAC9.05 - symbol:fml1 "ATP-dependent 3' to 5' DN... 184 5.8e-22 2
UNIPROTKB|A4RN08 - symbol:MPH1 "ATP-dependent DNA helicas... 185 4.0e-21 3
WB|WBGene00001090 - symbol:drh-1 species:6239 "Caenorhabd... 179 8.6e-21 3
UNIPROTKB|I3LJY5 - symbol:LOC100737466 "Uncharacterized p... 257 1.9e-20 1
UNIPROTKB|D4ADT5 - symbol:Ddx58 "Protein Ddx58" species:1... 266 5.0e-19 1
UNIPROTKB|I3LGW3 - symbol:DDX58 "Probable ATP-dependent R... 257 1.2e-17 1
UNIPROTKB|Q9GLV6 - symbol:DDX58 "Probable ATP-dependent R... 248 1.1e-16 1
UNIPROTKB|F1SI11 - symbol:FANCM "Uncharacterized protein"... 191 1.1e-16 3
UNIPROTKB|Q8IYD8 - symbol:FANCM "Fanconi anemia group M p... 188 1.4e-16 3
UNIPROTKB|E2RNF7 - symbol:FANCM "Uncharacterized protein"... 185 1.7e-16 3
UNIPROTKB|J9P777 - symbol:FANCM "Uncharacterized protein"... 185 1.7e-16 3
CGD|CAL0005976 - symbol:MPH1 species:5476 "Candida albica... 170 6.7e-16 2
MGI|MGI:2442306 - symbol:Fancm "Fanconi anemia, complemen... 182 1.4e-15 3
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 163 1.1e-14 2
SGD|S000001441 - symbol:MPH1 "3'-5' DNA helicase involved... 246 1.6e-14 2
UNIPROTKB|Q5E9G8 - symbol:LGP2 "Putative uncharacterized ... 225 1.8e-14 1
UNIPROTKB|E2QXT4 - symbol:DHX58 "Uncharacterized protein"... 218 1.0e-13 1
UNIPROTKB|I3LAY7 - symbol:FANCM "Uncharacterized protein"... 158 2.8e-13 3
UNIPROTKB|J9NY43 - symbol:FANCM "Uncharacterized protein"... 149 9.2e-13 3
UNIPROTKB|B2RTQ9 - symbol:FANCM "FANCM protein" species:9... 147 2.4e-12 3
UNIPROTKB|G3MWK8 - symbol:DHX58 "Uncharacterized protein"... 201 3.6e-12 1
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 164 4.1e-12 5
ASPGD|ASPL0000062874 - symbol:AN10063 species:162425 "Eme... 151 5.1e-12 3
FB|FBgn0038889 - symbol:CG7922 species:7227 "Drosophila m... 153 5.5e-12 3
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 144 1.8e-11 2
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 131 4.4e-11 2
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 141 1.2e-10 2
UNIPROTKB|C9JG98 - symbol:DHX58 "Probable ATP-dependent R... 174 8.5e-10 1
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 114 1.8e-09 3
ZFIN|ZDB-GENE-090929-1 - symbol:fancm "Fanconi anemia, co... 129 1.8e-09 6
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 109 2.1e-08 3
DICTYBASE|DDB_G0274841 - symbol:fncM "ATP-dependent DNA h... 150 2.7e-08 5
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 140 4.6e-08 3
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 132 5.2e-08 2
UNIPROTKB|F6QFS2 - symbol:F6QFS2 "Uncharacterized protein... 160 6.2e-08 1
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 148 7.5e-08 3
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 147 9.6e-08 5
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 147 9.6e-08 5
ZFIN|ZDB-GENE-061013-64 - symbol:ddx28 "DEAD (Asp-Glu-Ala... 115 1.1e-07 2
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 112 1.7e-07 2
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 112 1.7e-07 2
UNIPROTKB|C9JE76 - symbol:DHX58 "Probable ATP-dependent R... 133 3.0e-07 1
WARNING: Descriptions of 118 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 3475 (1228.3 bits), Expect = 0., Sum P(4) = 0.
Identities = 669/872 (76%), Positives = 745/872 (85%)
Query: 1061 TQVSDFAVLFSSELD---AELASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVS 1117
T ++ +++F ++ ++L LK+FHVRLMSIVLDVDV+P TTPWDPAKAYLFVPV +
Sbjct: 1009 TMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGA 1068
Query: 1118 DKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGM 1177
+K DP+ E+DW LV I TDAW NPLQRARPDVYLGTNERTLGGDRREYGFGKLRHG
Sbjct: 1069 EKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGT 1128
Query: 1178 AFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIHNADMPT-GKLMMADSCANAGDLE 1236
AFGQK+HPTYGIRGAIA+FD+VKASGLVP R+ + H +D GKL MADSC NA DL
Sbjct: 1129 AFGQKAHPTYGIRGAIAEFDIVKASGLVPARD--RGHFSDYQNQGKLFMADSCWNAKDLA 1186
Query: 1237 GRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQ 1296
G +VTAAHSGKRFYV+ I Y M AE+SFPRKEGYLGPLEYSSYADYYKQKYGVELI++KQ
Sbjct: 1187 GMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQ 1246
Query: 1297 PLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFLPPELCFIHPLPGSLVRGAQ 1356
PLIR RGVSYCKNLLSPRFEHS LDKTYYV+LPPELC +HPLPGSLVRGAQ
Sbjct: 1247 PLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQ 1306
Query: 1357 RLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWV 1416
RLPSIMRRVESMLLA+QLKD I+YPVPA+KILEALTAASCQET CYERAELLGDAYLKWV
Sbjct: 1307 RLPSIMRRVESMLLAVQLKDIIDYPVPATKILEALTAASCQETLCYERAELLGDAYLKWV 1366
Query: 1417 VSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLP 1476
VSRFLFLKYPQKHEGQLTRMRQQMVSN+VLYQYAL+K LQSYIQADRFAPSRWAAPGVLP
Sbjct: 1367 VSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLP 1426
Query: 1477 VFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKTLA 1536
VFDE++++ + S+FD+E + E + ++Y+ SS YRVLSSKTLA
Sbjct: 1427 VFDEESREYEPSIFDEESTGCELQ---KESYDDYADNMQEDGEIEGDSSCYRVLSSKTLA 1483
Query: 1537 DVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFHALE 1596
DVVEALIGVYYV GGK AANHLMKWIGI E DPEE+ P +P +PES++RS++F L+
Sbjct: 1484 DVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEEIP-PPKPYDIPESIMRSINFDTLK 1542
Query: 1597 DALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGR 1656
L I+F+++GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLIT+HLFF+YT+LPPGR
Sbjct: 1543 GVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGR 1602
Query: 1657 LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLG 1716
LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL+ QIR+FVK+V EELLKPGFNSFGLG
Sbjct: 1603 LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLG 1662
Query: 1717 DCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQ 1776
DCKAPKVLGDIVESIAGAIFLDSG DTSVVW+VFQPLL PMVTPETLPMHPVRELQERCQ
Sbjct: 1663 DCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQ 1722
Query: 1777 QQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNXXXXXXXXXXXXXX 1836
QQAEGLEYKASR+GN+ATVEV++DGVQ+GVAQNPQKKMAQKLAARN
Sbjct: 1723 QQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKK 1782
Query: 1837 XXGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD 1896
DE ++KNG Q FTRQTLNDICLRR WPMP YRCV EGGPAHAKRF Y+VRVNT+D
Sbjct: 1783 E--DERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSD 1840
Query: 1897 KGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
+GWTDEC+GEPMPSVKKAKDSAAVLLLELLN+
Sbjct: 1841 RGWTDECIGEPMPSVKKAKDSAAVLLLELLNR 1872
Score = 2906 (1028.0 bits), Expect = 0., Sum P(4) = 0.
Identities = 579/735 (78%), Positives = 639/735 (86%)
Query: 404 QVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSV 463
QVLVMTAQILLNILRHSIIKM+AI+LLILDECHHAVKKHPYSLVMSEFYHTT KEKRP+V
Sbjct: 329 QVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAV 388
Query: 464 FGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA 523
FGMTASPVNLKGV+SQ DCAIKI NLESKLDSVVCTIKDRKELEKHVPMP EVVV+YDKA
Sbjct: 389 FGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKA 448
Query: 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAA 583
A+LWSLHEQ+KQME VEEAA SSS+R+KWQFMGARDAG+++ELR VYGVSERTESDGAA
Sbjct: 449 ATLWSLHEQIKQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAA 508
Query: 584 NLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQC 643
NLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQ+DVKFQESYL KVV LL C
Sbjct: 509 NLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVVDLLHC 568
Query: 644 ELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVT 703
+L EGA K + V+ +N + TN++EEGEL DSH GEHVD +IGAAVADGKVT
Sbjct: 569 QLTEGAAMKSETSDVEMQNT-EKHNTNDLEEGELPDSH----GEHVDEVIGAAVADGKVT 623
Query: 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763
P+VQ+LIKILLKYQHTEDFRAIIFVERVV ALVLPKV AELPSLSF++ ASLIGHNN+QE
Sbjct: 624 PRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQE 683
Query: 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823
MR QMQ+TI+KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK
Sbjct: 684 MRACQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 743
Query: 824 PGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVY 883
PGSDYILM+ERGN+SH TFLRNARNSEETLRKEA+ERTDLSHL TS L VD PG++Y
Sbjct: 744 PGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMY 803
Query: 884 QVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCN 943
QVESTGAVVSLNSAVGLIHFYCSQLPSDRYSIL PEFIM+++EKPGG EYSCKLQLPCN
Sbjct: 804 QVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCN 863
Query: 944 APFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEP 1003
APFEKLEGP+CSS+RLAQQAVCLAACKKLHEMGAFTD LLPD+GSGE EK +QNDEGEP
Sbjct: 864 APFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEG-EKTEQNDEGEP 922
Query: 1004 LPGTARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQV 1063
LPGTARHREFYPEGVADIL+GEWILSGRDG S+ L+MY+V CVN G SKDPF+TQ+
Sbjct: 923 LPGTARHREFYPEGVADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQL 982
Query: 1064 SDFAVLFSSELDAELAS--LKNFHVRLM----SIVLDVDVEPYTTPWDPAKAY--LFVPV 1115
S+FA++F +ELDAE+ S + F R M S+V +E + K++ + +
Sbjct: 983 SNFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSI 1042
Query: 1116 VSDKSVDPMNELDWD 1130
V D VDP + WD
Sbjct: 1043 VLDVDVDP-STTPWD 1056
Score = 361 (132.1 bits), Expect = 0., Sum P(4) = 0.
Identities = 80/130 (61%), Positives = 98/130 (75%)
Query: 245 EPRGYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEA-------KE 297
E RG+WERDR G MVFR G+WE + +R K A Q+ G + KK+EA +E
Sbjct: 205 EARGFWERDRGGK--MVFRSGTWEQESDREAKRAR--TQD-GGSMEKKAEADRMGAAQRE 259
Query: 298 K-MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVF 356
K + EE+AR YQL+VLEQAK +NTIAFLETGAGKTLIAVLLI+S+C+ + ++NKKMLAVF
Sbjct: 260 KPVAEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVF 319
Query: 357 LVPKVPLVYQ 366
LVPKVPLVYQ
Sbjct: 320 LVPKVPLVYQ 329
Score = 70 (29.7 bits), Expect = 0., Sum P(4) = 0.
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 12 GGGESNQSSYWLDACED---ILIDEFVNFDTSVVQDSVDNTSNQDSLSNDFFGGIDHILD 68
G GE ++YW DACED +L ++F S D + + F ID IL+
Sbjct: 10 GAGEHAAAAYWYDACEDGASLLCG--IDFAASADFDPGLIPAMDTGADDGFVAEIDRILE 67
Query: 69 SI 70
SI
Sbjct: 68 SI 69
Score = 39 (18.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 391 WDAQRWQREFD 401
WD +R +R+FD
Sbjct: 184 WDDRRGRRDFD 194
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 567 (204.7 bits), Expect = 3.7e-169, Sum P(5) = 3.7e-169
Identities = 134/298 (44%), Positives = 185/298 (62%)
Query: 1525 SSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPE 1584
+S R L K++ADVVE+LIG Y EGG+ AA M W+GI+V+ ++ R + +
Sbjct: 1087 ASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKI---QRDSPIQA 1143
Query: 1585 SVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITK 1643
L +V + +E L F+D+ LLVEA+TH S + CYQRLEF+GD+VLD+LITK
Sbjct: 1144 EKLVNVGY--MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITK 1201
Query: 1644 HLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLE 1703
HL+ Y L PG LTD+R+A+VNNE +A VAVK LH H+ + S L + I V E +
Sbjct: 1202 HLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQ 1261
Query: 1704 ELLKPGFNSFGL-GDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPET 1762
L+ ++FG D PKVLGD++ES+AGAIF+DSG + VV+ +PLL M+TPET
Sbjct: 1262 SSLQ---STFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPET 1318
Query: 1763 LPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVG-VAQNPQKKMAQKLA 1819
+ +HPVREL E CQ+ E ++ + TVEV + A+ KKMA+KLA
Sbjct: 1319 VKLHPVRELTELCQKWQ--FELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLA 1374
Score = 498 (180.4 bits), Expect = 3.7e-169, Sum P(5) = 3.7e-169
Identities = 125/315 (39%), Positives = 192/315 (60%)
Query: 692 IIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAE-LPSLSFV 750
I G A A G +T K LI+ LL Y E+ R IIFV+RV+ A+VL + AE LP+ +
Sbjct: 359 INGNAEA-GLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNW 417
Query: 751 KSASLIGHNNSQEMRTFQMQ-ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
K+ + G+N+ + +T + Q E + FR G V ++VATS+ EEGLD++ CN+VIRFD A
Sbjct: 418 KTKYVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPAS 477
Query: 810 TVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDT 869
+ ++IQSRGRAR SDY++M+E G+L + L + + +R+E+++ + L
Sbjct: 478 NICSFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHS----LVPC 533
Query: 870 SRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPG 929
L P +++VESTGA V+L+S+V LI+ YCS+LPSD Y P F + + +
Sbjct: 534 PPLPDDSDEP--LFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQ--- 588
Query: 930 GPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG 989
G SC L LP + P ++++ ++ ++ +QAVCL AC +LH++GA +D L+PD
Sbjct: 589 G----SCTLYLPKSCPVKEVKAE--ANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVA 642
Query: 990 E---QQ-EKVDQNDE 1000
E Q+ EK+ N E
Sbjct: 643 ETVSQKLEKIQYNTE 657
Score = 481 (174.4 bits), Expect = 3.7e-169, Sum P(5) = 3.7e-169
Identities = 113/247 (45%), Positives = 152/247 (61%)
Query: 300 PEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359
P AR YQ++ LE+A K+NTI FLETG+GKTLIA++L+RS L R+ VFLVP
Sbjct: 20 PLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYAY-LFRKPSPCFCVFLVP 78
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
+V LV QQAE ++ T VG Y G+MG DFWD+ W++E D +VLVMT ILL+ LRH
Sbjct: 79 QVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKYEVLVMTPAILLDALRH 138
Query: 420 SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH---TTSKEKRPSVFGMTASPVNLKGV 476
S + + I +LI+DECHHA KHPY+ +M EFYH + P +FGMTAS V KG
Sbjct: 139 SFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNVPRIFGMTASLVKTKG- 197
Query: 477 SSQVDCAIK-ICNLESKLDSVVCTIKDRKELEKHVPM--PSEVVVEYDKAAS--LWSLHE 531
+D K I LE+ ++S V T ++ L VP PS ++ K S SL E
Sbjct: 198 -ENLDSYWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYYQHIKIPSPKRASLVE 256
Query: 532 QLKQMEV 538
+L+++ +
Sbjct: 257 KLERLTI 263
Score = 320 (117.7 bits), Expect = 3.7e-169, Sum P(5) = 3.7e-169
Identities = 85/308 (27%), Positives = 149/308 (48%)
Query: 1173 LRHGMAFGQKSHP-TYGIRGAIAQFDVVKASGLVPDREAMQIHNADMPTGK---LMMADS 1228
LR G+A P T+ ++ ++V+++ L E ++ H G L D
Sbjct: 772 LRDGVALDYLLVPSTHSHETSLIDWEVIRSVNLT-SHEVLEKHENCSTNGASRILHTKDG 830
Query: 1229 CANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYG 1288
++ +V H+G + + + + S ++ G +Y +YY++++G
Sbjct: 831 LFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNS--GD---QTYIEYYEERHG 885
Query: 1289 VELIFKKQPLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFLPPELCFI--HP 1346
++L F +PL+ GR + + L H D+ + V LPPELC + P
Sbjct: 886 IQLNFVDEPLLNGRHIFTLHSYL-----HMAKKKKEKEH--DREF-VELPPELCHVILSP 937
Query: 1347 LPGSLVRGAQRLPSIMRRVESMLLAIQLKDKI-NYPVPASKILEALTAASCQETFCYERA 1405
+ ++ +PS+M+R+ES+L+A LK I +P K+LEA+T C++ F E
Sbjct: 938 ISVDMIYSYTFIPSVMQRIESLLIAYNLKKSIPKVNIPTIKVLEAITTKKCEDQFHLESL 997
Query: 1406 ELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFA 1465
E LGD++LK+ V + LF HEG L+ + M+SN++L Q+ + LQ +I+ + F
Sbjct: 998 ETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFE 1057
Query: 1466 PSRWAAPG 1473
P W PG
Sbjct: 1058 PKGWMVPG 1065
Score = 112 (44.5 bits), Expect = 1.2e-92, Sum P(4) = 1.2e-92
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 1364 RVESMLLAIQLKDKINYPVPASKIL-EALTAASC---QETFCYERAELLGDAYLKWVVSR 1419
+ E ++ ++ +NY +L EALT S + CY+R E LGD+ L +++++
Sbjct: 1142 QAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITK 1201
Query: 1420 FLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
L+ KYP G LT MR V+N A+ L +I
Sbjct: 1202 HLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHI 1241
Score = 57 (25.1 bits), Expect = 5.9e-123, Sum P(5) = 5.9e-123
Identities = 36/132 (27%), Positives = 61/132 (46%)
Query: 585 LIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCE 644
L++ + Y L +LG A K AQS L+A QND +L++ F + + K S E
Sbjct: 286 LLRISSTLTYCLDDLGILLAQKAAQS-LSASQNDSFLWGELNM-FSVALVKKFCSDASQE 343
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV-VSGGEHVDVIIGAAVADGKVT 703
+ + V + NG E G ++ L+++ + S E++ II D +T
Sbjct: 344 FLAEIPQGLNWSVANI-NGNAEAGLLTLKTVCLIETLLGYSSLENIRCII---FVDRVIT 399
Query: 704 PKV-QSLIKILL 714
V +SL+ +L
Sbjct: 400 AIVLESLLAEIL 411
Score = 48 (22.0 bits), Expect = 6.2e-86, Sum P(4) = 6.2e-86
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 1609 LVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNE 1668
++EAIT ++ + LE +GD+ L + + + LF G L+ + ++N
Sbjct: 979 VLEAIT--TKKCEDQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNV 1036
Query: 1669 NFARVAVKHKLHVHLR 1684
+ + KL +R
Sbjct: 1037 MLCQFGCQQKLQGFIR 1052
Score = 40 (19.1 bits), Expect = 3.7e-169, Sum P(5) = 3.7e-169
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 1062 QVSDFAVLFSSELDAELASLKNFHVRLMSIVLDVDVEPYT 1101
Q++ F VL ++ + +L H+R + LD + P T
Sbjct: 748 QITLFRVLLDHSVENLMEALNGLHLR-DGVALDYLLVPST 786
Score = 40 (19.1 bits), Expect = 9.9e-141, Sum P(4) = 9.9e-141
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 1527 YRVLSSKTLADVVEALIGVYYVEG 1550
+RVL ++ +++EAL G++ +G
Sbjct: 752 FRVLLDHSVENLMEALNGLHLRDG 775
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 494 (179.0 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 116/320 (36%), Positives = 166/320 (51%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG-HNNSQE 763
K LI +L +Y E+ + I+FV+R+ A + + L L F K L+G H+ S+
Sbjct: 401 KFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNLKCLEFWKCEFLVGCHSGSKN 460
Query: 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823
M +M + +F G V LLVATSV EEGLDI+ C +V+RFDL +TV ++IQSRGRAR
Sbjct: 461 MSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRARM 520
Query: 824 PGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVY 883
S Y++++ER N SH L E + +E RT D D + +Y
Sbjct: 521 TKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTS----NDM-----FDCLEENIY 571
Query: 884 QVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCN 943
QV++TGA +S +V L+H YC LP D + P F G C+L LP N
Sbjct: 572 QVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYI-----DGIEGIICRLILPPN 626
Query: 944 APFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEP 1003
A F + +G C S A++ CL AC KLH++GA TD LLP GS + + V N
Sbjct: 627 AAFRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRKNKVSVTNNSSNNK 686
Query: 1004 LPGTARHREFYPEGVADILQ 1023
+ + E + + +L+
Sbjct: 687 VEDDSLREELHEMLIPAVLK 706
Score = 468 (169.8 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 117/300 (39%), Positives = 168/300 (56%)
Query: 1526 SYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPES 1585
S+ L K +ADVVE+LIG + VEGG AA + WIGI V+ + + + + S
Sbjct: 1148 SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNNPALYRVLDSSSINLS 1207
Query: 1586 VLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHL 1645
++ D LE+ + KFK +GLL++A H S CYQRLEF+GDAVL+++IT +L
Sbjct: 1208 LMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYL 1267
Query: 1646 FFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEEL 1705
+ +Y ++ PG++TDLR+ AV N++ A AV+ +H HL S+ L I F E+ +L
Sbjct: 1268 YSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF--EMYVKL 1325
Query: 1706 LKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPM 1765
+ C PK LGDIVES GA+ LDSG + + VW+V LL P++T +
Sbjct: 1326 SNSEKDLLEEPAC--PKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT 1383
Query: 1766 HPVRELQERCQQQA-E-GLEYKASRSGNL-ATVEVYIDG-VQVGVAQNPQKKMAQKLAAR 1821
+P+REL+E CQ E GL G VEV I + + A N K A+K AA+
Sbjct: 1384 NPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQ 1443
Score = 419 (152.6 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 95/192 (49%), Positives = 122/192 (63%)
Query: 287 GKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQ 346
G + E K+ P AR YQLD+ ++A ++N I +L TG GKT IAVLLI + L
Sbjct: 15 GPSSTRGEPKD--PRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYEL-GHLI 71
Query: 347 RQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVL 406
R+ + + +FL P +PLV QQA VI T + V Y G G++ D Q W+ + +VL
Sbjct: 72 RKPSREVCIFLAPTIPLVRQQAVVIASSTDFKVQCYYGN-GKNSRDHQEWENDMREFEVL 130
Query: 407 VMTAQILLNILRHSIIKMEAINLLILDECHHAV--KKHPYSLVMSEFYHTTSKEKRPSVF 464
VMT QILL LRH IKM +I LLILDECHHA K+HPY+ +M EFY++ S EK P VF
Sbjct: 131 VMTPQILLQSLRHCFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYNSNSVEKFPRVF 190
Query: 465 GMTASPVNLKGV 476
GMTASP+ KGV
Sbjct: 191 GMTASPIIGKGV 202
Score = 372 (136.0 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 96/281 (34%), Positives = 158/281 (56%)
Query: 1201 ASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTA 1260
+S + D + +H + L + D + D+ G +V + H+ F+V+ I E+ A
Sbjct: 847 SSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIFFFVDGILDEINA 906
Query: 1261 ESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSXX 1320
S + G ++YA+++K+++ +EL +QPL++ + + +NLL R +
Sbjct: 907 WSE------HSG----ATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTE 956
Query: 1321 XXXXXXXILDKTYYVFLPPELCFIHPLPGSLVRGAQR--LPSIMRRVESMLLAIQLKDKI 1378
+L+ ++V LPPELC + + S G+ LPS+M R+E++L+AI+LKD +
Sbjct: 957 SEGRE--LLE--HFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVM 1012
Query: 1379 --NYP----VPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1432
++P + AS ILEALT C E ER E+LGDA+LK+VV R F+ Y EGQ
Sbjct: 1013 LSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQ 1072
Query: 1433 LTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPG 1473
LTR R +V+N LY+ ++ K LQ YI+ +F P+++ APG
Sbjct: 1073 LTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPG 1113
Score = 120 (47.3 bits), Expect = 2.6e-92, Sum P(8) = 2.6e-92
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 1587 LRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLF 1646
L+ V + +A +I G+L EA+T + +S +R E +GDA L +++ +H F
Sbjct: 1008 LKDVMLSSFPEASQISAS--GIL-EALT-TEKCLERISL-ERFEVLGDAFLKYVVGRHKF 1062
Query: 1647 FSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLR 1684
+Y L G+LT R+ VNN + ++++ KL V++R
Sbjct: 1063 ITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
Score = 117 (46.2 bits), Expect = 5.4e-92, Sum P(8) = 5.4e-92
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 1401 CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
CY+R E LGDA L++V++ +L+ YP GQ+T +R V N L A+ K + ++
Sbjct: 1247 CYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLI 1306
Query: 1461 AD 1462
D
Sbjct: 1307 KD 1308
Score = 91 (37.1 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 1840 DENGKKRKNGTQTF--TRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDK 1897
+++ KK +G R L ++C W P ++ +E GP+H ++FTY V V
Sbjct: 1554 EKSNKKVYHGDMVHKTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGA 1613
Query: 1898 GWTD-ECVGEPMPSVKKAKDSAA 1919
T EC + K A++ AA
Sbjct: 1614 SATLLECHSDGKLQKKAAQEHAA 1636
Score = 57 (25.1 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 474 KGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEY 520
KG S++++ I +LE L + VC++ D +ELE V P V Y
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSV-DNEELESVVASPDMEVYFY 271
Score = 53 (23.7 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVK-----FQESYLSKVVSLLQCELV 646
I + L ELG + A + A++FL+ D+ ++D+ F YL+ S+L
Sbjct: 322 IIFCLQELGSFGALQAARTFLS-FDGDKLDRREVDLNGSTSSFAHHYLNGATSILSRNKT 380
Query: 647 EGA 649
+G+
Sbjct: 381 DGS 383
Score = 46 (21.3 bits), Expect = 5.6e-38, Sum P(6) = 5.6e-38
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 750 VKSASLI---GHNNSQEMRTFQMQETIAKFRD 778
+KS +I + NS+ R F QET++K ++
Sbjct: 1420 IKSKIIICTAANRNSKAARKFAAQETLSKLKN 1451
Score = 44 (20.5 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 1110 YLFVPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNE--RTLGG 1163
YL +P+ K +DW VE+ + + +P+ + Y +NE R L G
Sbjct: 821 YLLLPI-KQKCYGDRFMIDWPAVERCLSSPIFKDPIDVSVHASY-SSNESLRLLDG 874
Score = 40 (19.1 bits), Expect = 2.4e-162, Sum P(9) = 2.4e-162
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 522 KAASLWSLHEQL 533
K SLW LHE +
Sbjct: 311 KLKSLWRLHENI 322
Score = 38 (18.4 bits), Expect = 9.9e-162, Sum P(9) = 9.9e-162
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1027 ILSGRDGCTGSKLFHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSE 1073
+L + C G + + +C+++ I KDP VS A S+E
Sbjct: 823 LLPIKQKCYGDRFMIDWPAVERCLSSPIFKDPI--DVSVHASYSSNE 867
Score = 38 (18.4 bits), Expect = 3.6e-37, Sum P(6) = 3.6e-37
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 984 PDKGSGEQQEKVDQNDEGEPLPGTARHR 1011
P K GE KV+ N + + + TA +R
Sbjct: 1405 PMKADGEYHVKVEVNIKSKIIICTAANR 1432
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 704 (252.9 bits), Expect = 1.3e-152, Sum P(4) = 1.3e-152
Identities = 200/557 (35%), Positives = 287/557 (51%)
Query: 1278 SYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFL 1337
S+ + + YGVEL QPL+R + + + +NLL R + + LD+ Y++ +
Sbjct: 992 SHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQE-----LDE-YFIEI 1045
Query: 1338 PPELCF--IHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVP------ASKILE 1389
PPEL I L + LPSIM R+E++L+AI+LK ++ +P ++LE
Sbjct: 1046 PPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLE 1105
Query: 1390 ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQY 1449
ALT C E ER E+LGDA+LK+ VSR LFL + EG+LTR R +V+N L +
Sbjct: 1106 ALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRL 1165
Query: 1450 ALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNX 1509
A+ K LQ YI+ P+++ A G P T D +S K V + N
Sbjct: 1166 AIKKNLQVYIRDQALDPTQFFAFGH-PC--RVTCDEVAS-----KEV--------HSLNR 1209
Query: 1510 XXXXXXXXXXXXXXSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESD 1569
S + L KT+ADVVEAL+G + V+ G A +KWIG+ V+ +
Sbjct: 1210 DLGILESNTGEIRCSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFE 1269
Query: 1570 PEEV--GCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQ 1627
+V C + +P + +++ LE+ L KF +GLLV+A H S G CYQ
Sbjct: 1270 SLQVQDACIASRRYLPLTTRNNLE--TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQ 1327
Query: 1628 RLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGS 1687
RLEF+GDAVLD+L+T + F + L PG+LTDLR+ +VNNE A VAV L L S
Sbjct: 1328 RLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCES 1387
Query: 1688 SALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVW 1747
L I D+ + L G S G + PKVLGD+VES GA+FLD G + + VW
Sbjct: 1388 IYLHEVIEDYTNFLASSPLASG-QSEGP---RCPKVLGDLVESCLGALFLDCGFNLNHVW 1443
Query: 1748 QVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYI--DGVQVG 1805
+ LDP+ L + P++EL E CQ E A++ TVE+ + +G +
Sbjct: 1444 TMMLSFLDPVKNLSNLQISPIKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLT 1503
Query: 1806 V-AQNPQKKMAQKLAAR 1821
V A K+ K AA+
Sbjct: 1504 VSATGRNKREGTKKAAQ 1520
Score = 464 (168.4 bits), Expect = 1.3e-152, Sum P(4) = 1.3e-152
Identities = 116/353 (32%), Positives = 185/353 (52%)
Query: 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAAL 735
E L S V D++ AA+ + + K+ LIKIL ++ + IIFV R+V A
Sbjct: 443 EALSSGVAKDENASDLLSLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTAR 502
Query: 736 VLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK-FRDGRVTLLVATSVAEEGL 794
L + L L KS L+G ++ + + + ETI K F+ + LLVAT V EEGL
Sbjct: 503 TLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGL 562
Query: 795 DIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLR 854
DI+ C +VIR+DL +TV ++IQSRGRAR P S+Y +++ GN + N + +E+ +
Sbjct: 563 DIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMN 622
Query: 855 KEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYS 914
E R+ ++T + + +Y+V TGA +S S++ L++ YCS+LP D +
Sbjct: 623 LEITYRSS----EETCPRLDEE-----LYKVHETGACISGGSSISLLYKYCSRLPHDEFF 673
Query: 915 ILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHE 974
+PEF + ++ GG C++ LP NAP ++E + S A++ CL A +LH
Sbjct: 674 QPKPEFQFKPVDEFGGTI---CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHN 730
Query: 975 MGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHR-EFYPEGVADILQGEW 1026
+G D LLPD + E D + + + G R + Y V + + +W
Sbjct: 731 LGVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKW 783
Score = 424 (154.3 bits), Expect = 1.3e-152, Sum P(4) = 1.3e-152
Identities = 124/354 (35%), Positives = 179/354 (50%)
Query: 293 SEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
S EK P + AR YQ+++ ++A ++N I +L TG GKT IAV+LI + L KK
Sbjct: 113 SPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYEL-GHLVLSPKKS 171
Query: 353 LAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ-RWQREFDTKQVLVMTAQ 411
+ +FL P V LV QQA+VI + + V +CG G+ + W+RE +VLVMT Q
Sbjct: 172 VCIFLAPTVALVEQQAKVIADSVNFKVAIHCG--GKRIVKSHSEWEREIAANEVLVMTPQ 229
Query: 412 ILLNILRHSIIKMEAINLLILDECHHAVKK--HPYSLVMSEFYHTTSKEKRPSVFGMTAS 469
ILL+ L+H IKME I+LLI DECHHA ++ HPY+ +M FY + S + RP +FGMTAS
Sbjct: 230 ILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFYKSESLQ-RPRIFGMTAS 288
Query: 470 PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSL 529
PV KG + + I +LE+ L++ V +++ +L+ V P V Y A S
Sbjct: 289 PVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYRSALS---- 344
Query: 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKL 589
Q + E + +R D + L + + +R+ NLI
Sbjct: 345 --DASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHD----NLI--- 395
Query: 590 RAINYALGELGQWCAYKVAQSFLTALQN--DERANYQLDVKFQESYLSKVVSLL 641
Y L LG W A + A+ L + N DE K ++YLS L
Sbjct: 396 ----YTLLNLGLWGAIQAAKIQLNSDHNVQDEPVGKNPKSKICDTYLSMAAEAL 445
Score = 328 (120.5 bits), Expect = 5.7e-112, Sum P(4) = 5.7e-112
Identities = 91/264 (34%), Positives = 140/264 (53%)
Query: 1219 PTGK-LMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYS 1277
P+G L +A+ C N D++ +V +S + ++V I + S P KE
Sbjct: 939 PSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADICHGRNGFS--PVKES-----STK 991
Query: 1278 SYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFL 1337
S+ + + YGVEL QPL+R + + + +NLL R + + LD+ Y++ +
Sbjct: 992 SHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHNRMQTNLEPQE-----LDE-YFIEI 1045
Query: 1338 PPELCF--IHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVP------ASKILE 1389
PPEL I L + LPSIM R+E++L+AI+LK ++ +P ++LE
Sbjct: 1046 PPELSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLE 1105
Query: 1390 ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQY 1449
ALT C E ER E+LGDA+LK+ VSR LFL + EG+LTR R +V+N L +
Sbjct: 1106 ALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRL 1165
Query: 1450 ALSKGLQSYIQADRFAPSRWAAPG 1473
A+ K LQ YI+ P+++ A G
Sbjct: 1166 AIKKNLQVYIRDQALDPTQFFAFG 1189
Score = 107 (42.7 bits), Expect = 1.3e-152, Sum P(4) = 1.3e-152
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDK-GWTDECVGEPMPSVKK 1913
+ L++ C+ W P + C E GP H K F Y V + D T EC GE + K
Sbjct: 1623 KSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARATKKG 1682
Query: 1914 AKDSAA 1919
A + AA
Sbjct: 1683 AAEHAA 1688
Score = 44 (20.5 bits), Expect = 1.6e-108, Sum P(4) = 1.6e-108
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 848 NSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSL 894
NS+ ++ E + + S + DT ++ +A+ V + E+ ++SL
Sbjct: 415 NSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENASDLLSL 461
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 426 (155.0 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 110/322 (34%), Positives = 180/322 (55%)
Query: 725 IIFVERVVAALVLPKVFAEL----PSLSFVKSASLIGH--------NNSQEMRTFQMQET 772
IIFVER A+VL ++ E P L+++ S + GH N E+ + +E
Sbjct: 431 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFRKQEEV 490
Query: 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832
+ KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GRAR P S+YI++
Sbjct: 491 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSNYIMLA 550
Query: 833 ERGNLSHATF---LRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTG 889
+ TF L+ + E+ LR + + + + + + +P V + E G
Sbjct: 551 DSERTK--TFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSEDGG 608
Query: 890 AVVSLNSAVGLIHFYCSQLPSDRYSILRPEF-IMERHEKPGGPTEYSCKLQLPCNAPFE- 947
V++N+A+G ++ YC++LPSD ++ L P+ +E + GG Y L LP N+P
Sbjct: 609 PRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNT--GG---YRSTLFLPINSPLRV 663
Query: 948 KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQNDEGE---P 1003
+ GPV + RLA++AV L C+KLH++G D L+P K + + +E++D +DE E P
Sbjct: 664 PVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVP 723
Query: 1004 -LPGTARHREFYPEGVADILQG 1024
PG+ + R+ P+ + + L+G
Sbjct: 724 GRPGSTKRRQCSPKAIPECLRG 745
Score = 373 (136.4 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 96/243 (39%), Positives = 137/243 (56%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITKHLFFSYT 1650
F E + FK++ L++A THAS + ++ CYQRLEF+GDA+LD+LITKHL+
Sbjct: 1609 FLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1668
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
PG LTDLR+A VNN FA +AVK+ H + + S L I DFV+ LE+ G
Sbjct: 1669 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1728
Query: 1711 NSF---------GLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP- 1760
+S D + PK +GDI ES+AGAI++DSG VWQV+ P++ P++
Sbjct: 1729 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1788
Query: 1761 -ETLPMHPVRELQERCQQQAEGLEYKASRSGNL-ATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+P PVREL E + A+ + + G + TVEV G GV ++ ++A+
Sbjct: 1789 SANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS--YRIAKSA 1846
Query: 1819 AAR 1821
AAR
Sbjct: 1847 AAR 1849
Score = 350 (128.3 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 87/229 (37%), Positives = 121/229 (52%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQ+++LE A + NTI L TG+GKT IAVLLI+ + + ++ +N K VFLV V
Sbjct: 35 RKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKR-TVFLVNAASSV 93
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQA +R + VG Y E W + W RE QVLVMT I L++L++ ++ +
Sbjct: 94 AQQASTVRTHSDLQVGDYMSE-DMTSWPEEMWNREMIENQVLVMTCHIFLHVLKNGVLPL 152
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAI 484
INLL+ DECH A+ HPY +M S P + G+TAS +N G D
Sbjct: 153 SKINLLVFDECHLAITGHPYREIMKICEGCPSC---PRILGLTASILN--GKCDPCDLEE 207
Query: 485 KICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL 533
KI NLE L S T D L+++ P E V++ + L E+L
Sbjct: 208 KIQNLEKILQSNAETATDLVVLDRYASQPREEVLDCGQYQDQSGLSERL 256
Score = 205 (77.2 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 46/121 (38%), Positives = 67/121 (55%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1279 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1338
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDK 1505
Y+ KGL S + F P W PG V ++D D D+ K +A K D+
Sbjct: 1339 YRLGKKKGLPSRMVVSIFDPPVNWLPPGY--VVNQDKSSTDKWDSDENKDLANGKASDDE 1396
Query: 1506 N 1506
+
Sbjct: 1397 D 1397
Score = 167 (63.8 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 49/137 (35%), Positives = 67/137 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 930 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLSNVNQPLLDVDHTSSR 982
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 983 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1042
Query: 1361 IMRRVESMLLAIQLKDK 1377
I+ R+ +L A +L+ +
Sbjct: 1043 ILYRLHCLLTAEELRSQ 1059
Score = 123 (48.4 bits), Expect = 4.1e-84, Sum P(6) = 4.1e-84
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 1359 PSIMRRVESMLLA-IQLKDKINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYL 1413
P R + ++ + + KINY + +L+A T AS T CY+R E LGDA L
Sbjct: 1596 PDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1655
Query: 1414 KWVVSRFLFLKYPQKHE-GQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
+++++ L+ + P++H G LT +R +V+N + A+ Y +A
Sbjct: 1656 DYLITKHLY-EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA 1703
Score = 121 (47.7 bits), Expect = 6.5e-84, Sum P(6) = 6.5e-84
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 1597 DALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGR 1656
D+ K + GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GR
Sbjct: 1267 DSPKTLGPNPGLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGR 1324
Query: 1657 LTDLRAAAVNNENFARVAVKHKL 1679
L+ +R+ V+N N R+ K L
Sbjct: 1325 LSYMRSKKVSNCNLYRLGKKKGL 1347
Score = 69 (29.3 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 1530 LSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEE 1572
++ K++AD VEAL+G Y G+ AA + +G++V PE+
Sbjct: 1530 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV-LPPEK 1571
Score = 50 (22.7 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 587 QKLRAINYALGELGQWCAYKVAQSFLTALQND-ERANYQLDVKF---QESYLSKVVSLLQ 642
Q L L LG WCA K A + LQ + +L+ KF ++ L K+ +L
Sbjct: 287 QVLNDCRAVLTVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKIHAL-- 344
Query: 643 CE 644
CE
Sbjct: 345 CE 346
Score = 43 (20.2 bits), Expect = 7.2e-129, Sum P(8) = 7.2e-129
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 702 VTPKVQSLIKILLKYQHTE 720
VTPKV L++IL +Y+ E
Sbjct: 359 VTPKVIRLLEILHEYKPFE 377
Score = 43 (20.2 bits), Expect = 6.4e-60, Sum P(6) = 6.4e-60
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 978 FTDMLLPDKGSGEQQEKVDQNDEGEP--LPGTARHREFYPEGVAD 1020
F D +L G+ ++ + D G P A + F P+G AD
Sbjct: 1431 FIDSMLIGSGAFGKKISLQPTDPGYEWKAPKKAHNSHFSPDGGAD 1475
Score = 39 (18.8 bits), Expect = 6.2e-45, Sum P(4) = 6.2e-45
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 270 DHNRAGKEANGIN---QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAK 316
DH + G ++ + + C+ +V + E P+E+ L V + K
Sbjct: 1106 DHCKLGTSSDSNHTAPESCSMEVSQPPEGAPNTPDEKLETLTLPVTDLNK 1155
Score = 38 (18.4 bits), Expect = 2.1e-59, Sum P(6) = 2.1e-59
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 985 DKGSGEQQEKVDQNDEGEP 1003
D +G+ + D++D+ EP
Sbjct: 1386 DLANGKASDDEDEDDDDEP 1404
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 698 (250.8 bits), Expect = 3.4e-124, Sum P(4) = 3.4e-124
Identities = 231/753 (30%), Positives = 363/753 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W +RW +EF QVL+MT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWNQEFTKHQVLIMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 QEMRTFQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q F+ QE + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVP 879
AR P S+YI++ + + S L+ + E+ LR + + D + D P
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFP 612
Query: 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQ 939
V + + G V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 613 PYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-LY 668
Query: 940 LPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQ 997
LP N+P + GP S +RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 669 LPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDL 728
Query: 998 NDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 729 HDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
Score = 378 (138.1 bits), Expect = 3.4e-124, Sum P(4) = 3.4e-124
Identities = 96/243 (39%), Positives = 138/243 (56%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITKHLFFSYT 1650
F E + +FK++ L++A THAS + ++ CYQRLEF+GDA+LD+LITKHL+
Sbjct: 1666 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1725
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
PG LTDLR+A VNN FA +AVK+ H + + S L I DFV+ LE+ G
Sbjct: 1726 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1785
Query: 1711 NSF---------GLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP- 1760
+S D + PK +GDI ES+AGAI++DSG VWQV+ P++ P++
Sbjct: 1786 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 1845
Query: 1761 -ETLPMHPVRELQERCQQQAEGLEYKASRSGNL-ATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+P PVREL E + A+ + + G + TVEV G GV ++ ++A+
Sbjct: 1846 SANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS--YRIAKSA 1903
Query: 1819 AAR 1821
AAR
Sbjct: 1904 AAR 1906
Score = 190 (71.9 bits), Expect = 3.4e-124, Sum P(4) = 3.4e-124
Identities = 44/120 (36%), Positives = 65/120 (54%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLGTD 1504
Y+ KGL S + F P W PG + D+ D + ++ +A KL D
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDED 1416
Score = 167 (63.8 bits), Expect = 3.4e-124, Sum P(4) = 3.4e-124
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 1.4e-82, Sum P(3) = 1.4e-82
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1295 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1353 NCNLYRLGKKKGL 1365
Score = 118 (46.6 bits), Expect = 2.2e-82, Sum P(3) = 2.2e-82
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1672 KINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1730
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1731 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1760
Score = 89 (36.4 bits), Expect = 1.3e-113, Sum P(4) = 1.3e-113
Identities = 43/170 (25%), Positives = 74/170 (43%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDED 1481
FL+Y Q+H + M M S + + +LS + A + + ++ G +P F D
Sbjct: 1442 FLEYDQEHIRFIDNML--MGSGAFVKKISLSP-FSTTDSAYEWKMPKKSSLGSMP-FSSD 1497
Query: 1482 TKDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSK 1533
+D D S +D K+V ED +G + + ++ K
Sbjct: 1498 FEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADK 1557
Query: 1534 TLADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSR 1578
++AD VEAL+G Y G+ AA + +G++V +D E+ CP+R
Sbjct: 1558 SIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTR 1607
Score = 40 (19.1 bits), Expect = 7.1e-111, Sum P(4) = 7.1e-111
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1020 DILQGEWILSGRDGCTGSKL 1039
++ G + L+ RD C G++L
Sbjct: 1183 NLANGSYDLANRDFCQGNQL 1202
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 689 (247.6 bits), Expect = 9.9e-124, Sum P(4) = 9.9e-124
Identities = 229/754 (30%), Positives = 369/754 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKK-MLAVFLVPKVP 362
R YQ+++LE A NTI L TG+GKT IAVLL + + ++ NK VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
V QQ +R + VG Y + W ++W +EF QVLVMT + L +LR+ +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMS--EFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ INLL+ DECH A++ HPY +M E Y + P + G+TAS +N G
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC-----PRILGLTASILN--GKCDPA 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++++ A
Sbjct: 218 ELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 Q-EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q E+ + +E + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D S +T ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSET-ETEPIVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + V++N+A+G I+ YC++LPSD ++ L P+ + E P T YS L
Sbjct: 612 PPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPK--CKTRELPDH-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 668 YLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 727
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
Score = 376 (137.4 bits), Expect = 9.9e-124, Sum P(4) = 9.9e-124
Identities = 103/271 (38%), Positives = 148/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + FK++ L++A THAS + +
Sbjct: 1637 EYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTI 1696
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1697 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1756
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ +E+ G +S D + PK +GDI ES+AG
Sbjct: 1757 FKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1816
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG +VWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1817 AIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1876
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1877 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1905
Score = 197 (74.4 bits), Expect = 9.9e-124, Sum P(4) = 9.9e-124
Identities = 44/120 (36%), Positives = 69/120 (57%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDK 1505
Y+ KGL S + F P W PG + ++D + D +++E++ E+ L K
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPGY--IVNQDKSNTDK--WEKEETTKENLLANGK 1413
Score = 167 (63.8 bits), Expect = 9.9e-124, Sum P(4) = 9.9e-124
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1296 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1354 NCNLYRLGKKKGL 1366
Score = 119 (46.9 bits), Expect = 1.7e-81, Sum P(3) = 1.7e-81
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1671 KINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1729
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1730 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1759
Score = 79 (32.9 bits), Expect = 2.4e-111, Sum P(4) = 2.4e-111
Identities = 43/175 (24%), Positives = 75/175 (42%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPV---F 1478
FL+Y Q+H + M M S + + +LS + + AP + ++ G +P F
Sbjct: 1441 FLEYDQEHIKFIDSML--MGSGAFVKKISLSHFSTTDSNYEWKAPKK-SSLGNVPFSSDF 1497
Query: 1479 DE-DTKDGDSSLF-DQEKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKT 1534
D+ D D+ + D K+V ED +G + + ++ K+
Sbjct: 1498 DDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKS 1557
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSRPACVPE 1584
+AD VEAL+G Y G+ AA + +G++V ++D E C + C E
Sbjct: 1558 IADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSE 1612
Score = 41 (19.5 bits), Expect = 2.0e-29, Sum P(4) = 2.0e-29
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD + +W++E TK+ L+ ++
Sbjct: 1388 VNQDKSNTDKWEKEETTKENLLANGKL 1414
Score = 40 (19.1 bits), Expect = 1.1e-42, Sum P(3) = 1.1e-42
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 14 GESNQSSYWLDACEDILIDEFVNFDTSVVQDSVDNTSNQDS 54
G +N+S+ D C + + + ++ +D VD+ N S
Sbjct: 1246 GNANRSTS--DGCPKMTVTTSTSTALNLSKDKVDSEKNTSS 1284
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 690 (248.0 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 232/754 (30%), Positives = 365/754 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W ++W +EF QVLVMT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLK-QMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYGRLLVELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 QEMRTFQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q F+ QE + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D D ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGET-DIEPVVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + G V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 612 PPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S +RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 668 YLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 727
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
Score = 379 (138.5 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 96/243 (39%), Positives = 139/243 (57%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITKHLFFSYT 1650
F E + +FK++ L++A THAS + ++ CYQRLEF+GDA+LD+LITKHL+
Sbjct: 1667 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1726
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
PG LTDLR+A VNN FA +AVK+ H + + S L I DFV+ LE+ G
Sbjct: 1727 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 1786
Query: 1711 NSF---------GLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP- 1760
+S D + PK +GDI ES+AGAI++DSG +VWQV+ P++ P++
Sbjct: 1787 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKF 1846
Query: 1761 -ETLPMHPVRELQERCQQQAEGLEYKASRSGNL-ATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+P PVREL E + A+ + + G + TVEV G GV ++ ++A+
Sbjct: 1847 SANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS--YRIAKSA 1904
Query: 1819 AAR 1821
AAR
Sbjct: 1905 AAR 1907
Score = 190 (71.9 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 44/120 (36%), Positives = 65/120 (54%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLGTD 1504
Y+ KGL S + F P W PG + D+ D + ++ +A KL D
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNADKWEKDEMTKDCMLANGKLDED 1417
Score = 167 (63.8 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 1.0e-81, Sum P(3) = 1.0e-81
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1296 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1354 NCNLYRLGKKKGL 1366
Score = 118 (46.6 bits), Expect = 1.6e-81, Sum P(3) = 1.6e-81
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1673 KINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1731
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1732 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1761
Score = 88 (36.0 bits), Expect = 1.0e-112, Sum P(4) = 1.0e-112
Identities = 43/170 (25%), Positives = 73/170 (42%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDED 1481
FL+Y Q+H + M M S + + +LS + A + + ++ G +P F D
Sbjct: 1443 FLEYDQEHIKFIDNML--MGSGAFVKKISLSP-FSTTDSAYEWKMPKKSSLGSMP-FSSD 1498
Query: 1482 TKDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSK 1533
+D D S +D K+V ED +G + + ++ K
Sbjct: 1499 FEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADK 1558
Query: 1534 TLADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSR 1578
++AD VEAL+G Y G+ AA + +G++V +D E+ CP R
Sbjct: 1559 SIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVMKRTDREKTMCPPR 1608
Score = 42 (19.8 bits), Expect = 2.3e-109, Sum P(5) = 2.3e-109
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1227 DSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESS 1263
D AN +G TAA G V +++ +M +E S
Sbjct: 1245 DGNANKSTSDGSPTTAAMPGTTEAVRALKDKMGSEQS 1281
Score = 40 (19.1 bits), Expect = 2.3e-109, Sum P(5) = 2.3e-109
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1020 DILQGEWILSGRDGCTGSKL 1039
++ G + L+ RD C G++L
Sbjct: 1184 NLANGSYDLANRDFCQGNQL 1203
Score = 38 (18.4 bits), Expect = 1.9e-31, Sum P(3) = 1.9e-31
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD +A +W+++ TK ++ ++
Sbjct: 1388 VNQDKSNADKWEKDEMTKDCMLANGKL 1414
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 689 (247.6 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 229/754 (30%), Positives = 369/754 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKK-MLAVFLVPKVP 362
R YQ+++LE A NTI L TG+GKT IAVLL + + ++ NK VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
V QQ +R + VG Y + W ++W +EF QVLVMT + L +LR+ +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMS--EFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ INLL+ DECH A++ HPY +M E Y + P + G+TAS +N G
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC-----PRILGLTASILN--GKCDPA 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++++ A
Sbjct: 218 ELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 Q-EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q E+ + +E + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D S +T ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSET-ETEPIVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + V++N+A+G I+ YC++LPSD ++ L P+ + E P T YS L
Sbjct: 612 PPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPK--CKTRELPDH-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 668 YLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 727
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
+DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 761
Score = 376 (137.4 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 103/271 (38%), Positives = 148/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + FK++ L++A THAS + +
Sbjct: 1637 EYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTI 1696
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1697 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1756
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ +E+ G +S D + PK +GDI ES+AG
Sbjct: 1757 FKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1816
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG +VWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1817 AIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1876
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1877 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1905
Score = 194 (73.4 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 43/120 (35%), Positives = 69/120 (57%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDK 1505
Y+ KGL S + F P W PG + ++D + D ++++++ E+ L K
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPGY--IVNQDKSNTDK--WEKDETTKENLLANGK 1413
Score = 167 (63.8 bits), Expect = 2.0e-123, Sum P(4) = 2.0e-123
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 1.3e-81, Sum P(3) = 1.3e-81
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1296 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1354 NCNLYRLGKKKGL 1366
Score = 119 (46.9 bits), Expect = 1.7e-81, Sum P(3) = 1.7e-81
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1671 KINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1729
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1730 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1759
Score = 79 (32.9 bits), Expect = 2.4e-111, Sum P(4) = 2.4e-111
Identities = 43/175 (24%), Positives = 75/175 (42%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPV---F 1478
FL+Y Q+H + M M S + + +LS + + AP + ++ G +P F
Sbjct: 1441 FLEYDQEHIKFIDSML--MGSGAFVKKISLSHFSTTDSNYEWKAPKK-SSLGNVPFSSDF 1497
Query: 1479 DE-DTKDGDSSLF-DQEKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKT 1534
D+ D D+ + D K+V ED +G + + ++ K+
Sbjct: 1498 DDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKS 1557
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSRPACVPE 1584
+AD VEAL+G Y G+ AA + +G++V ++D E C + C E
Sbjct: 1558 IADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSE 1612
Score = 39 (18.8 bits), Expect = 2.9e-42, Sum P(3) = 2.9e-42
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 14 GESNQSSYWLDACEDILIDEFVNFDTSVVQDSVDNTSNQDS 54
G +N+S+ D C + + + ++ +D VD+ N S
Sbjct: 1246 GNANRSTS--DGCPKMTLTTSTSTALNLSKDKVDSEKNTSS 1284
Score = 38 (18.4 bits), Expect = 5.1e-29, Sum P(4) = 5.1e-29
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD + +W+++ TK+ L+ ++
Sbjct: 1388 VNQDKSNTDKWEKDETTKENLLANGKL 1414
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 684 (245.8 bits), Expect = 2.1e-123, Sum P(4) = 2.1e-123
Identities = 227/750 (30%), Positives = 368/750 (49%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICN----DLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + + DL + K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRAKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W +RW +EF QVL+MT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKL---CESCPSCPRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYASQPCEIVVDCGPFTDRSGLYERLLMELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 INFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQ-WCAYK-VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL---------QCEL 645
EL + + + + AL + + LD+K+ + K++ +L Q E
Sbjct: 338 EELHRKFLLFTDTLLRKIHALCEEHFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFES 397
Query: 646 VEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPK 705
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 398 VEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTAV 455
Query: 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN--SQE 763
V + L+K +D P++ A + S +F+ IG N S++
Sbjct: 456 V---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRSKQ 493
Query: 764 MRT-FQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
M F+ QE + KFR LL+ATSV EEG+DI +CN+V+RFDL +Y+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
Query: 822 RKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV-P 879
R P S+Y+++ + + S L+ + E+ LR + + D + D ++ D V P
Sbjct: 554 RAPISNYVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEA-DVDAVVDDDDVFP 612
Query: 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQ 939
V + + G V++N+A+G ++ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 613 PYVLRPDDGGPRVTINTAIGHVNRYCARLPSDPFTHLAPK--CRTQELPDG-TFYST-LY 668
Query: 940 LPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQ 997
LP N+P + GP +RLA++ V L C+KLH++G + L+P K + + +E++D
Sbjct: 669 LPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDL 728
Query: 998 NDEGE---P-LPGTARHREFYPEGVADILQ 1023
+DE E P PG+ + R+ YP+ + + L+
Sbjct: 729 HDEEETSVPGRPGSTKRRQCYPKAIPECLR 758
Score = 383 (139.9 bits), Expect = 2.1e-123, Sum P(4) = 2.1e-123
Identities = 105/271 (38%), Positives = 149/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + +FK++ L++A THAS + +
Sbjct: 1633 EYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTI 1692
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1693 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1752
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ LE+ G +S D + PK +GDI ES+AG
Sbjct: 1753 FKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1812
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG VVWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1813 AIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1872
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1873 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1901
Score = 192 (72.6 bits), Expect = 2.1e-123, Sum P(4) = 2.1e-123
Identities = 44/120 (36%), Positives = 66/120 (55%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLGTD 1504
Y+ KGL S + F P W PG + D+ + + ++ +A KLG D
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNAEKWEKDEMTKDCLLANGKLGKD 1416
Score = 167 (63.8 bits), Expect = 2.1e-123, Sum P(4) = 2.1e-123
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 4.5e-81, Sum P(3) = 4.5e-81
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1295 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1353 NCNLYRLGKKKGL 1365
Score = 118 (46.6 bits), Expect = 7.2e-81, Sum P(3) = 7.2e-81
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1667 KINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1725
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1726 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1755
Score = 78 (32.5 bits), Expect = 1.9e-111, Sum P(4) = 1.9e-111
Identities = 39/153 (25%), Positives = 66/153 (43%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDED 1481
FL+Y Q+H + M M S + + +LS S + P + ++ G +P F D
Sbjct: 1438 FLEYDQEHIQFIDSML--MGSGAFVKKISLSPFSTSDSAYEWKMPKK-SSLGSMP-FSSD 1493
Query: 1482 TKDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSK 1533
+D D S +D K+V ED +G + + ++ K
Sbjct: 1494 LEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADK 1553
Query: 1534 TLADVVEALIGVYYVEGGKDAANHLMKWIGIQV 1566
++AD VEAL+G Y G+ AA + +G++V
Sbjct: 1554 SIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 60 (26.2 bits), Expect = 4.0e-33, Sum P(3) = 4.0e-33
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 270 DHNRAGK-EANGINQEC---NGKVGKKSEAKEKM----PEEQARPYQLDVLEQAKKKNTI 321
D + A K E + + ++C NGK+GK E +E + P+E+A Y+ D LE ++ I
Sbjct: 1390 DKSNAEKWEKDEMTKDCLLANGKLGKDCEEEEALTWRAPKEEAE-YEDDFLEYDQEH--I 1446
Query: 322 AFLET 326
F+++
Sbjct: 1447 QFIDS 1451
Score = 42 (19.8 bits), Expect = 2.9e-31, Sum P(3) = 2.9e-31
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD +A++W+++ TK L+ ++
Sbjct: 1387 VNQDKSNAEKWEKDEMTKDCLLANGKL 1413
Score = 37 (18.1 bits), Expect = 9.1e-110, Sum P(4) = 9.1e-110
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 1020 DILQGEWILSGRDGCTGSKL 1039
++ G + L RD C G++L
Sbjct: 1183 NLANGSYDLVNRDFCQGNQL 1202
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 679 (244.1 bits), Expect = 2.8e-123, Sum P(4) = 2.8e-123
Identities = 226/749 (30%), Positives = 367/749 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICN----DLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + + DL K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W +RW +EF QVL+MT + L +L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKL---CESCPSCPRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEAA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
++ + + SK + + R V V +D A + +++L+ I +
Sbjct: 278 LDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQ-WCAYK-VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL---------QCEL 645
EL + + + + AL + + LD+K+ + K++ +L Q E
Sbjct: 338 EELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFES 397
Query: 646 VEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPK 705
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 398 VEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTAV 455
Query: 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN--SQE 763
V + L+K +D P++ A + S +F+ IG N S++
Sbjct: 456 V---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRSKQ 493
Query: 764 MRT-FQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
M F+ QE + KFR LL+ATSV EEG+DI +CN+V+RFDL +Y+QS+GRA
Sbjct: 494 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
Query: 822 RKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPG 880
R P S+Y+++ + + S L+ + E+ LR + + D + + + DA P
Sbjct: 554 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPP 613
Query: 881 TVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQL 940
V + + G V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L L
Sbjct: 614 YVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-LYL 669
Query: 941 PCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQN 998
P N+P + GP S+RLA++ V L C+KLH++G + L+P K + + +E++D +
Sbjct: 670 PINSPLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLH 729
Query: 999 DEGE---P-LPGTARHREFYPEGVADILQ 1023
DE E P PG+ + R+ YP+ + + L+
Sbjct: 730 DEEETSVPGRPGSTKRRQCYPKAIPECLR 758
Score = 391 (142.7 bits), Expect = 2.8e-123, Sum P(4) = 2.8e-123
Identities = 106/271 (39%), Positives = 149/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + +FK++ L++A THAS + +
Sbjct: 1632 EYGCLKIPPRCMFDHPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTI 1691
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1692 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1751
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFVK LE+ G +S D + PK +GDI ES+AG
Sbjct: 1752 FKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1811
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG VVWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1812 AIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1871
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1872 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1900
Score = 188 (71.2 bits), Expect = 2.8e-123, Sum P(4) = 2.8e-123
Identities = 43/118 (36%), Positives = 65/118 (55%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLG 1502
Y+ KGL S + F P W PG + D+ + + ++ +A KLG
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNSEKWEKDEMTKDCLLANGKLG 1414
Score = 167 (63.8 bits), Expect = 2.8e-123, Sum P(4) = 2.8e-123
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 1.6e-80, Sum P(3) = 1.6e-80
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1295 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1353 NCNLYRLGKKKGL 1365
Score = 118 (46.6 bits), Expect = 2.5e-80, Sum P(3) = 2.5e-80
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1666 KINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1724
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1725 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1754
Score = 74 (31.1 bits), Expect = 2.6e-111, Sum P(4) = 2.6e-111
Identities = 38/152 (25%), Positives = 65/152 (42%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLP----V 1477
FL+Y Q+H + M M S + + +LS S + P + A+ G +P +
Sbjct: 1438 FLEYDQEHIQFIDSML--MGSGAFVRKISLSPFSASDSAYEWKMPKK-ASLGSMPFASGL 1494
Query: 1478 FDEDTKDGDSSLF-DQEKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKT 1534
D D D+ + D K+V ED +G + + ++ K+
Sbjct: 1495 EDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKS 1554
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQV 1566
+AD VEAL+G Y G+ AA + +G++V
Sbjct: 1555 IADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 45 (20.9 bits), Expect = 5.2e-32, Sum P(3) = 5.2e-32
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 270 DHNRAGK-EANGINQEC---NGKVGKKSEAKEKM----PEEQARPYQLDVLEQAKKKNTI 321
D + + K E + + ++C NGK+G+ E +E + P+E+A D LE ++ I
Sbjct: 1390 DKSNSEKWEKDEMTKDCLLANGKLGEACEEEEDLTWRAPKEEAEDED-DFLEYDQEH--I 1446
Query: 322 AFLET 326
F+++
Sbjct: 1447 QFIDS 1451
Score = 39 (18.8 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD ++++W+++ TK L+ ++
Sbjct: 1387 VNQDKSNSEKWEKDEMTKDCLLANGKL 1413
Score = 37 (18.1 bits), Expect = 1.2e-109, Sum P(4) = 1.2e-109
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 1020 DILQGEWILSGRDGCTGSKL 1039
++ G + L RD C G++L
Sbjct: 1183 NLANGSYDLVNRDFCQGNQL 1202
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 680 (244.4 bits), Expect = 3.9e-122, Sum P(4) = 3.9e-122
Identities = 228/750 (30%), Positives = 370/750 (49%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICN----DLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + + DL K+ VFLV
Sbjct: 35 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLSPHAKR--TVFLVNS 92
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W +RW +EF QVL+MT + LN+L++
Sbjct: 93 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKERWSQEFTKHQVLIMTCYVALNVLKNG 152
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M S P + G+TAS +N K ++
Sbjct: 153 YLSLSDINLLVFDECHLAILDHPYREIMKL---CDSCPSCPRILGLTASILNGKCDPDEL 209
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 210 E--EKIQKLEKILKSGAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEA 267
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
++ + S SK + + R V V +D A + +++L+ I +
Sbjct: 268 LDFINDCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 327
Query: 597 GELGQ-WCAYK-VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL---------QCEL 645
EL + + + + AL + + LD+K+ + K++ +L Q E
Sbjct: 328 EELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFES 387
Query: 646 VEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPK 705
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 388 VEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTAV 445
Query: 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN--SQE 763
V + L+K +D P++ A + S +F+ IG N S++
Sbjct: 446 V---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRSKQ 483
Query: 764 MRT-FQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821
M F+ QE + KFR LL+ATSV EEG+DI +CN+V+RFDL +Y+QS+GRA
Sbjct: 484 MEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 543
Query: 822 RKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV-P 879
R P S+Y+++ + + S L+ + E+ LR + + D + D ++ D V P
Sbjct: 544 RAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDGAEA-DVHAVVDDDDVFP 602
Query: 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQ 939
V + + G V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 603 PYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-LY 658
Query: 940 LPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQ 997
LP N+P + GP +RLA++ V L C+KLH++G + L+P K + + +E++D
Sbjct: 659 LPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDL 718
Query: 998 NDEGE---P-LPGTARHREFYPEGVADILQ 1023
+DE E P PG+ + R+ YP+ + + L+
Sbjct: 719 HDEEETSVPGRPGSTKRRQCYPKAIPECLR 748
Score = 378 (138.1 bits), Expect = 3.9e-122, Sum P(4) = 3.9e-122
Identities = 105/271 (38%), Positives = 148/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + FK++ L++A THAS + +
Sbjct: 1624 EYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTI 1683
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1684 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1743
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ LE+ G +S D + PK +GDI ES+AG
Sbjct: 1744 FKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1803
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG VVWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1804 AIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1863
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1864 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1892
Score = 189 (71.6 bits), Expect = 3.9e-122, Sum P(4) = 3.9e-122
Identities = 43/120 (35%), Positives = 66/120 (55%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1287 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1346
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLGTD 1504
Y+ +GL S + F P W PG + D+ + + ++ +A KLG D
Sbjct: 1347 YRLGKKQGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNSEKWEKDEMTKDCLLANGKLGED 1406
Score = 167 (63.8 bits), Expect = 3.9e-122, Sum P(4) = 3.9e-122
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 934 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 986
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 987 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1046
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1047 ILYRLHCLLTAEELR 1061
Score = 121 (47.7 bits), Expect = 9.3e-81, Sum P(3) = 9.3e-81
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1285 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1342
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1343 NCNLYRLGKKQGL 1355
Score = 117 (46.2 bits), Expect = 2.4e-80, Sum P(3) = 2.4e-80
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1658 KINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1716
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1717 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1746
Score = 72 (30.4 bits), Expect = 7.3e-110, Sum P(4) = 7.3e-110
Identities = 39/152 (25%), Positives = 64/152 (42%)
Query: 1423 LKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDT 1482
L+Y Q+H + M M S + + LS S + P + A+ G +P F D
Sbjct: 1431 LEYDQEHIQFIDSML--MGSGAFVKKIPLSPFSTSDSAYEWKMPKK-ASLGSVP-FSSDL 1486
Query: 1483 KDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKT 1534
+D D S +D K+V ED +G + + ++ K+
Sbjct: 1487 EDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKS 1546
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQV 1566
+AD VEAL+G Y G+ AA + +G++V
Sbjct: 1547 IADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1578
Score = 51 (23.0 bits), Expect = 4.7e-31, Sum P(3) = 4.7e-31
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 270 DHNRAGK-EANGINQEC---NGKVGKKSEAKE------KMPEEQARPYQLDVLEQAKKKN 319
D + + K E + + ++C NGK+G+ E +E + P+E+A Y+ D+LE ++
Sbjct: 1380 DKSNSEKWEKDEMTKDCLLANGKLGEDCEEEEEEELAWRAPKEEAE-YEDDLLEYDQEH- 1437
Query: 320 TIAFLET 326
I F+++
Sbjct: 1438 -IQFIDS 1443
Score = 39 (18.8 bits), Expect = 8.3e-30, Sum P(3) = 8.3e-30
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD ++++W+++ TK L+ ++
Sbjct: 1377 VNQDKSNSEKWEKDEMTKDCLLANGKL 1403
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 686 (246.5 bits), Expect = 7.1e-122, Sum P(4) = 7.1e-122
Identities = 230/761 (30%), Positives = 372/761 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L +G+GKT IAVLL + + D + K+ VFLV
Sbjct: 35 RKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNTKR--TVFLVNS 92
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R T VG Y + W +RW EF+T QVLVMT I LN+L+
Sbjct: 93 EKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCHIFLNVLKSG 152
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A++ HPY +M S + P + G+TAS +N G
Sbjct: 153 NVSLSNINLLVFDECHLAIQDHPYREIMKI---CESCQPCPRILGLTASILN--GKCDPR 207
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
D KI LE L S T D L+++ P E+V++ L+++L +++ A
Sbjct: 208 DLEEKIQKLEEILRSNAETATDLVVLDRYASQPCEIVLDCGPYIDKSGLYQRLLNELDEA 267
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + + V V +D A + +++L+ I +
Sbjct: 268 LNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVLGPWCADKVAGMMVRELQKYIKHEQ 327
Query: 597 GELGQ-WCAYK-VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL---------QCEL 645
EL + + + + AL + + LD+KF + K++ +L Q E
Sbjct: 328 EELHRKFLLFTDTILRKIHALCEEHFSPASLDMKFVTPKVIKLLEILRKYKPYERQQFES 387
Query: 646 VEGAVSKKDAKVV---DSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKV 702
VE ++ V DSE+ E EIEE E ++ S +++ G + +
Sbjct: 388 VEWYNNRNQDNYVSWSDSEDDDDED--EEIEEKEKTETSFPS--PFTNILCGIIFVERRY 443
Query: 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN--- 759
T V + L+K +D P++ A + S +F+ IG N
Sbjct: 444 TAVV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPR 481
Query: 760 NSQ-EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
N Q E+ + +E + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+
Sbjct: 482 NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSK 541
Query: 819 GRARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDA 877
GRAR P S+YI++ + + + L+ + E+ LR + + D + ++ ++ D
Sbjct: 542 GRARAPISNYIMLADSDKIKAFEEDLKTYKAIEKILRNKCSKSIDCGNT-ESEPIVDDDE 600
Query: 878 V-PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSC 936
+ P V + + V++N+A+G I+ YC++LPSD ++ L P+ + E P G Y
Sbjct: 601 IFPPYVLRQDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPK--CKTREFPDGL--YRS 656
Query: 937 KLQLPCNAPFEK-LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEK 994
L LP N+P + GP + RLA +AV L CKKLHE+G D L+P K + + +E+
Sbjct: 657 TLYLPINSPLRAPIVGPPMNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEE 716
Query: 995 VDQNDEGE---P-LPGTARHREFYPEGVADILQGEWILSGR 1031
+D +DE E P PG+ + R+ YP+ + + L+ + G+
Sbjct: 717 LDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRNSYPKPGQ 757
Score = 371 (135.7 bits), Expect = 7.1e-122, Sum P(4) = 7.1e-122
Identities = 95/243 (39%), Positives = 136/243 (55%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITKHLFFSYT 1650
F E + FK++ L++A THAS + ++ CYQRLEF+GDA+LD+LITKHL+
Sbjct: 1637 FENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 1696
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
PG LTDLR+A VNN FA +AVK+ H + + S L I DFV+ LE+ G
Sbjct: 1697 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGM 1756
Query: 1711 NSF---------GLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP- 1760
+S D + PK +GDI ES+AGAI++DSG VW V+ P++ P++
Sbjct: 1757 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKF 1816
Query: 1761 -ETLPMHPVRELQERCQQQAEGLEYKASRSGNL-ATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+P PVREL E + A+ + + G + TVEV G GV ++ ++A+
Sbjct: 1817 SANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS--YRIAKSA 1874
Query: 1819 AAR 1821
AAR
Sbjct: 1875 AAR 1877
Score = 188 (71.2 bits), Expect = 7.1e-122, Sum P(4) = 7.1e-122
Identities = 42/119 (35%), Positives = 65/119 (54%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1274 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1333
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTD 1504
Y+ KG S + F P W PG + D+++ +S+ E + K+ D
Sbjct: 1334 YRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKNSDKWESNETSGEDVMVNGKIDED 1392
Score = 166 (63.5 bits), Expect = 7.1e-122, Sum P(4) = 7.1e-122
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 938 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 990
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 991 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPVPASLWRKAVCLPS 1050
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1051 ILYRLHCLLTAEELR 1065
Score = 130 (50.8 bits), Expect = 1.5e-70, Sum P(2) = 1.5e-70
Identities = 40/133 (30%), Positives = 66/133 (49%)
Query: 1334 YVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVP-ASKILEALT 1392
Y+ +PP F HP + L ++ E+ + KINYP + +L+A T
Sbjct: 1612 YLKIPPRCMFEHP------DAEKTLDHLISGFENF------EKKINYPFKNKAYLLQAFT 1659
Query: 1393 AASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-GQLTRMRQQMVSNLVLYQ 1448
AS T CY+R E LGDA L +++++ L+ + P++H G LT +R +V+N +
Sbjct: 1660 HASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNNTIFAS 1718
Query: 1449 YALSKGLQSYIQA 1461
A+ Y +A
Sbjct: 1719 LAVKYDYHKYFKA 1731
Score = 119 (46.9 bits), Expect = 4.1e-81, Sum P(3) = 4.1e-81
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1272 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1329
Query: 1667 NENFARVAVK 1676
N N R+ K
Sbjct: 1330 NCNLYRLGKK 1339
Score = 73 (30.8 bits), Expect = 8.1e-110, Sum P(4) = 8.1e-110
Identities = 40/157 (25%), Positives = 65/157 (41%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPV---- 1477
FL+Y Q+H + M M S + + LS S+ D+ W AP P+
Sbjct: 1416 FLEYDQEHIKFIDSML--MGSGAFVKKIPLS----SFAPPDQ--NYEWRAPKKPPLESSQ 1467
Query: 1478 ----FDE-DTKDGDSSLF-DQEKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRV 1529
FD+ D D+ + D K+V ED +G + +
Sbjct: 1468 FPCDFDDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGADAGKQSISYDLHTEQC 1527
Query: 1530 LSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQV 1566
++ K++AD VEAL+G Y G+ AA + +G++V
Sbjct: 1528 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1564
Score = 48 (22.0 bits), Expect = 6.5e-54, Sum P(4) = 6.5e-54
Identities = 23/111 (20%), Positives = 45/111 (40%)
Query: 777 RDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGN 836
R G VT+ + + L++ Q ++ R L + + ++I R KP ++ + +
Sbjct: 812 RSGEVTISIELKKSGFTLNLEQLELITR--LHQYIFSHIL---RLEKPALEFKPTV--AD 864
Query: 837 LSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVES 887
++ N N TL D ++D + + +P T Y ES
Sbjct: 865 CAYCVLPLNVVNDSGTLD------IDFKFVEDIEKSEARTGIPNTQYSAES 909
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 677 (243.4 bits), Expect = 2.7e-121, Sum P(5) = 2.7e-121
Identities = 229/757 (30%), Positives = 369/757 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKK-MLAVFLVPKVP 362
R YQ+++LE A NTI L TG+GKT IAVLL + + ++ NK VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSAN 104
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
V QQ +R + VG Y + W ++W +EF QVLVMT + L +LR+ +
Sbjct: 105 QVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYL 164
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMS--EFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ INLL+ DECH A++ HPY +M E Y + P + G+TAS +N G
Sbjct: 165 SLSNINLLVFDECHLAIQDHPYREIMKICEDYPSC-----PRILGLTASILN--GKCDPA 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+ +L ++++ A
Sbjct: 218 ELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 Q-EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q E+ + +E + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+YI++ + + S L+ + E+ LR + + D S +T ++ D V
Sbjct: 553 ARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSET-ETEPIVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + + V++N+A+G I+ YC++LPSD ++ L P+ + E P T YS L
Sbjct: 612 PPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPK--CKTRELPDH-TFYST-L 667
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHE---MGAFTDMLLP-DKGSGEQQE 993
LP N+P + GP S RLA++ V L C+KLH+ +G D L+P K + + +E
Sbjct: 668 YLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIEYLGELDDHLMPVGKETVKYEE 727
Query: 994 KVDQNDEGE---P-LPGTARHREFYPEGVADILQGEW 1026
++D +DE E P PG+ + R+ YP+ + + L+ +
Sbjct: 728 ELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSY 764
Score = 376 (137.4 bits), Expect = 2.7e-121, Sum P(5) = 2.7e-121
Identities = 103/271 (38%), Positives = 148/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + FK++ L++A THAS + +
Sbjct: 1641 EYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTI 1700
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1701 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1760
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ +E+ G +S D + PK +GDI ES+AG
Sbjct: 1761 FKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1820
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG +VWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1821 AIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1880
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1881 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1909
Score = 194 (73.4 bits), Expect = 2.7e-121, Sum P(5) = 2.7e-121
Identities = 43/120 (35%), Positives = 69/120 (57%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1302 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1361
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDK 1505
Y+ KGL S + F P W PG + ++D + D ++++++ E+ L K
Sbjct: 1362 YRLGKKKGLPSRMVVSIFDPPVNWLPPGY--IVNQDKSNTDK--WEKDETTKENLLANGK 1417
Score = 167 (63.8 bits), Expect = 2.7e-121, Sum P(5) = 2.7e-121
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 948 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 1000
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 1001 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1060
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1061 ILYRLHCLLTAEELR 1075
Score = 120 (47.3 bits), Expect = 2.3e-79, Sum P(4) = 2.3e-79
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1300 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1357
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1358 NCNLYRLGKKKGL 1370
Score = 119 (46.9 bits), Expect = 2.9e-79, Sum P(4) = 2.9e-79
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 1377 KINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHE-G 1431
KINY + +L+A T AS T CY+R E LGDA L +++++ L+ + P++H G
Sbjct: 1675 KINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY-EDPRQHSPG 1733
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
LT +R +V+N + A+ Y +A
Sbjct: 1734 VLTDLRSALVNNTIFASLAVKYDYHKYFKA 1763
Score = 79 (32.9 bits), Expect = 2.8e-109, Sum P(5) = 2.8e-109
Identities = 43/175 (24%), Positives = 75/175 (42%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPV---F 1478
FL+Y Q+H + M M S + + +LS + + AP + ++ G +P F
Sbjct: 1445 FLEYDQEHIKFIDSML--MGSGAFVKKISLSHFSTTDSNYEWKAPKK-SSLGNVPFSSDF 1501
Query: 1479 DE-DTKDGDSSLF-DQEKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSKT 1534
D+ D D+ + D K+V ED +G + + ++ K+
Sbjct: 1502 DDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKS 1561
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSRPACVPE 1584
+AD VEAL+G Y G+ AA + +G++V ++D E C + C E
Sbjct: 1562 IADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSE 1616
Score = 42 (19.8 bits), Expect = 2.7e-121, Sum P(5) = 2.7e-121
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 1078 LASLKNFHVRLMSIVLDVDVEPYT-TPWDPAKAYLFVPVVSDKSVDPMNELDWDLVEKIT 1136
L + H + S +L ++ P + AY +P+ + ++D+ +E I
Sbjct: 846 LELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNIEVDDSSTLDIDFKFMEDIE 905
Query: 1137 KTDAWT 1142
K++A T
Sbjct: 906 KSEART 911
Score = 39 (18.8 bits), Expect = 3.0e-42, Sum P(3) = 3.0e-42
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 14 GESNQSSYWLDACEDILIDEFVNFDTSVVQDSVDNTSNQDS 54
G +N+S+ D C + + + ++ +D VD+ N S
Sbjct: 1250 GNANRSTS--DGCPKMTLTTSTSTALNLSKDKVDSEKNTSS 1288
Score = 38 (18.4 bits), Expect = 5.2e-29, Sum P(4) = 5.2e-29
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 386 MGQDFWDAQRWQREFDTKQVLVMTAQI 412
+ QD + +W+++ TK+ L+ ++
Sbjct: 1392 VNQDKSNTDKWEKDETTKENLLANGKL 1418
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 697 (250.4 bits), Expect = 6.8e-120, Sum P(4) = 6.8e-120
Identities = 234/759 (30%), Positives = 369/759 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W ++W +EF QVLVMT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLVMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 QEMRTFQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q F+ QE + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+Y+++ + + S L+ + E+ LR + + D DT ++ D V
Sbjct: 553 ARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEA-DTEPVVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + E G V++N+A+G ++ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 612 PPYVLRPED-GPRVTINTAIGHVNRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-L 666
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S +RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 667 YLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 726
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEWILSGR 1031
+DE E P PG+ + R+ YP+ + + L+ + G+
Sbjct: 727 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPRPGQ 765
Score = 382 (139.5 bits), Expect = 6.8e-120, Sum P(4) = 6.8e-120
Identities = 104/271 (38%), Positives = 150/271 (55%)
Query: 1572 EVGCPS-RPACV---PES--VLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P++ LR + F E + +FK++ L++A THAS + +
Sbjct: 1636 EYGCLKIPPRCMFDHPDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTI 1695
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1696 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1755
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ LE+ G +S D + PK +GDI ES+AG
Sbjct: 1756 FKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1815
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG VWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 1816 AIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1875
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1876 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1904
Score = 167 (63.8 bits), Expect = 6.8e-120, Sum P(4) = 6.8e-120
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 943 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 995
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 996 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1055
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1056 ILYRLHCLLTAEELR 1070
Score = 146 (56.5 bits), Expect = 6.8e-120, Sum P(4) = 6.8e-120
Identities = 40/120 (33%), Positives = 62/120 (51%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ HEG+L+ MR + VSN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTISSALI--LHEGRLSYMRSKKVSNCNL 1354
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDE-DTKDGDSSLFDQEKSVAEDKLGTD 1504
Y+ KGL S + F P W PG + D+ +T+ + ++ +A KL D
Sbjct: 1355 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDD 1414
Score = 120 (47.3 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 1359 PSIMRRVESMLLAIQ-LKDKINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYL 1413
P R + ++ + + KINY + +L+A T AS T CY+R E LGDA L
Sbjct: 1651 PDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1710
Query: 1414 KWVVSRFLFLKYPQKHE-GQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
+++++ L+ + P++H G LT +R +V+N + A+ Y +A
Sbjct: 1711 DYLITKHLY-EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA 1758
Score = 92 (37.4 bits), Expect = 3.2e-114, Sum P(4) = 3.2e-114
Identities = 44/170 (25%), Positives = 74/170 (43%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDED 1481
FL+Y Q+H + M M S + + +LS + A + + ++ G LP F D
Sbjct: 1440 FLEYDQEHIKFIDNML--MGSGAFVKKISLSP-FSATDSAYEWKMPKKSSLGSLP-FSSD 1495
Query: 1482 TKDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSK 1533
+D D S +D K+V ED +G + + ++ K
Sbjct: 1496 FEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADK 1555
Query: 1534 TLADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSR 1578
++AD VEAL+G Y G+ AA + +G++V +D E+ CP+R
Sbjct: 1556 SIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTR 1605
Score = 92 (37.4 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT S L GRL+ +R+ V+
Sbjct: 1295 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITT--ISSALILHEGRLSYMRSKKVS 1350
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1351 NCNLYRLGKKKGL 1363
Score = 41 (19.5 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 136 AGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRF 173
A G+L D F +E D H+ D D ED F
Sbjct: 1407 ANGKLDDDFEEEEEEEEDLMWRAHK----EDADDEDDF 1440
Score = 37 (18.1 bits), Expect = 2.9e-106, Sum P(4) = 2.9e-106
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1021 ILQGEWILSGRDGCTGSKL 1039
+ G + L+ RD C G+ L
Sbjct: 1184 LANGSYDLANRDFCQGNHL 1202
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 696 (250.1 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 233/759 (30%), Positives = 369/759 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W ++W +EF QVL+MT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL-KQMEVA 539
+ KI LE L S T D L+++ P E+VV+ L+E+L ++E A
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEA 277
Query: 540 VEEAAQSS-SRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL-IQKLRA-INYAL 596
+ + S SK + + R V V +D A + +++L+ I +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQ 337
Query: 597 GELGQWCAYKVAQSFLT---ALQNDERANYQLDVKFQESYLSKVVSLL---------QCE 644
EL + +FL AL + + LD+KF + K++ +L Q E
Sbjct: 338 EELHRKFLL-FTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFE 396
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704
VE ++ V + + EIEE E +++ S +++ G + + T
Sbjct: 397 SVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPS--PFTNILCGIIFVERRYTA 454
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN---NS 761
V + L+K +D P++ A + S +F+ IG N N
Sbjct: 455 VV---LNRLIKEAGKQD----------------PEL-AYISS-NFITGHG-IGKNQPRNK 492
Query: 762 QEMRTFQMQETIA-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q F+ QE + KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GR
Sbjct: 493 QMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
Query: 821 ARKPGSDYILMIERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV- 878
AR P S+Y+++ + + S L+ + E+ LR + + D DT ++ D V
Sbjct: 553 ARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEA-DTEPVVDDDDVF 611
Query: 879 PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKL 938
P V + E G V++N+A+G ++ YC++LPSD ++ L P+ E P G T YS L
Sbjct: 612 PPYVLRPED-GPRVTINTAIGHVNRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-L 666
Query: 939 QLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVD 996
LP N+P + GP S +RLA++ V L C+KLH++G D L+P K + + +E++D
Sbjct: 667 YLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELD 726
Query: 997 QNDEGE---P-LPGTARHREFYPEGVADILQGEWILSGR 1031
+DE E P PG+ + R+ YP+ + + L+ + G+
Sbjct: 727 LHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPRPGQ 765
Score = 379 (138.5 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 104/271 (38%), Positives = 149/271 (54%)
Query: 1572 EVGCPS-RPACV---PES--VLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ PE+ LR + F E + +FK++ L++A THAS + +
Sbjct: 1639 EYGCLKIPPRCMFDHPEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTI 1698
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 1699 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1758
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ LE+ G +S D + PK +GDI ES+AG
Sbjct: 1759 FKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1818
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG VWQV+ P++ P++ +P PVREL E + + + + G
Sbjct: 1819 AIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPEITKFSPAERTYDGK 1878
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVEV G GV ++ ++A+ AAR
Sbjct: 1879 VRVTVEVVGKGKFKGVGRS--YRIAKSAAAR 1907
Score = 167 (63.8 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 943 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 995
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 996 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1055
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1056 ILYRLHCLLTAEELR 1070
Score = 138 (53.6 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 40/121 (33%), Positives = 62/121 (51%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRF-LFLKYPQKHEGQLTRMRQQMVSNLV 1445
IL+ALT ++ + F ER E+LGD++LK ++ L HEG+L+ MR + VSN
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCN 1356
Query: 1446 LYQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDE-DTKDGDSSLFDQEKSVAEDKLGT 1503
LY+ KGL S + F P PG + D+ +T+ + ++ +A KL
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNGLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDD 1416
Query: 1504 D 1504
D
Sbjct: 1417 D 1417
Score = 120 (47.3 bits), Expect = 2.3e-82, Sum P(3) = 2.3e-82
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 1359 PSIMRRVESMLLAIQ-LKDKINYPVP-ASKILEALTAASCQE---TFCYERAELLGDAYL 1413
P R + ++ + + KINY + +L+A T AS T CY+R E LGDA L
Sbjct: 1654 PEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713
Query: 1414 KWVVSRFLFLKYPQKHE-GQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
+++++ L+ + P++H G LT +R +V+N + A+ Y +A
Sbjct: 1714 DYLITKHLY-EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA 1761
Score = 92 (37.4 bits), Expect = 8.5e-114, Sum P(4) = 8.5e-114
Identities = 44/170 (25%), Positives = 74/170 (43%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDED 1481
FL+Y Q+H + M M S + + +LS + A + + ++ G LP F D
Sbjct: 1443 FLEYDQEHIKFIDNML--MGSGAFVKKISLSP-FSATDSAYEWKMPKKSSLGSLP-FSSD 1498
Query: 1482 TKDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSK 1533
+D D S +D K+V ED +G + + ++ K
Sbjct: 1499 FEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADK 1558
Query: 1534 TLADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSR 1578
++AD VEAL+G Y G+ AA + +G++V +D E+ CP+R
Sbjct: 1559 SIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTR 1608
Score = 89 (36.4 bits), Expect = 4.1e-79, Sum P(3) = 4.1e-79
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITK-HLFFSYTNLPPGRLTDLRAAAV 1665
GL+++A+T S S G + +RLE +GD+ L H IT L + GRL+ +R+ V
Sbjct: 1295 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKV 1352
Query: 1666 NNENFARVAVKHKL 1679
+N N R+ K L
Sbjct: 1353 SNCNLYRLGKKKGL 1366
Score = 41 (19.5 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 136 AGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRF 173
A G+L D F +E D H+ D D ED F
Sbjct: 1410 ANGKLDDDFEEEEEEEEDLMWRAHK----EDADDEDDF 1443
Score = 37 (18.1 bits), Expect = 5.4e-105, Sum P(4) = 5.4e-105
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 1021 ILQGEWILSGRDGCTGSKL 1039
+ G + L+ RD C G+ L
Sbjct: 1184 LANGSYDLANRDFCQGNHL 1202
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 388 (141.6 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 105/273 (38%), Positives = 148/273 (54%)
Query: 1530 LSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESD-PEE----VGCPSRP 1579
+S K++AD VEALIGV+ + G + +M W+G++V +SD P + P+ P
Sbjct: 1568 ISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPTNP 1627
Query: 1580 -ACVP--ESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDA 1635
A + ++ + F LE+ + +FK+R LV+A THAS ++ V+ CYQRLEF+GDA
Sbjct: 1628 NASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDA 1687
Query: 1636 VLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIR 1695
VLD++IT++LF PG LTDLR+A VNN FA +AVK + H L I
Sbjct: 1688 VLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIE 1747
Query: 1696 DFVKEVLEELLKPGFNS----------FGLG---DCKAPKVLGDIVESIAGAIFLDSGRD 1742
FVK E FN+ G D + PK +GDI ES+AGAI+LDSGR+
Sbjct: 1748 KFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRN 1807
Query: 1743 TSVVWQVFQPLLDPMVTP--ETLPMHPVRELQE 1773
WQV ++ + P P+REL E
Sbjct: 1808 LDTTWQVIFHMMRGTIELCCANPPRSPIRELME 1840
Score = 371 (135.7 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 108/344 (31%), Positives = 185/344 (53%)
Query: 714 LKYQHTEDFRAIIFVE-RVVA---ALVLPKVFAELPSLSFVKSASLIG-------HNNSQ 762
+K + E AIIFV+ R +A L++ + + P FV ++G ++SQ
Sbjct: 377 MKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQ 436
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+ Q E + +F + L+ATSV EEG+D++QCN+VI+FD + +Y+QS+GRAR
Sbjct: 437 GLHKRQT-EVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRAR 495
Query: 823 KPGSDYILMIERGNLSHA-TFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGT 881
+ GS Y++ +E + + + L++ + E+ L RT + ++D S V
Sbjct: 496 RAGSRYVITVEEKDTAACDSDLKDFQQIEKILLSR--HRTVNNPIEDDSDRFEEFDVDSQ 553
Query: 882 V--YQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQ 939
+ Y VE TGA + +++A+ LI+ YCS+LPSD ++ L P + E+ G T+Y +L
Sbjct: 554 MEPYVVEKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEE-NGVTKYCAELL 612
Query: 940 LPCNAPFEK---LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGS---GEQQE 993
LP N+P + L+ P+ + + AQ AV L AC++LH G D LLP KG + E
Sbjct: 613 LPINSPIKHAIVLKNPM-PNKKTAQMAVALEACRQLHLEGELDDNLLP-KGRESIAKLLE 670
Query: 994 KVDQN-DEGEP----LPGTARHREFYPEGVADILQGEWILSGRD 1032
+D+ DE P G+++ ++ Y + +A L ++ + ++
Sbjct: 671 HIDEEPDEYAPGIAAKVGSSKRKQLYDKKIARALNESFVEADKE 714
Score = 354 (129.7 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 89/221 (40%), Positives = 131/221 (59%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRS----ICNDLQRQNKKMLAVFLVPK 360
R YQ+++L++A KKNTI L TG+GKT IAVLL++ + L + K+ A F+V K
Sbjct: 14 RDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGKR--AFFVVEK 71
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQ-VLVMTAQILLNILRH 419
V LV QQA I T + VG G+ WD++ +F + V+V+TAQ LL+++RH
Sbjct: 72 VNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQCLLDLIRH 131
Query: 420 SIIKMEAINLLILDECHHAV-KKHPYSLVMSEFYHTTSKEKR-PSVFGMTASPVNLKGVS 477
+ +K+E + +LI DECHHA+ +HPY +M + Y K+K P V G+TAS + K
Sbjct: 132 AYLKIEDMCVLIFDECHHALGSQHPYRSIMVD-YKLLKKDKPVPRVLGLTASLIKAKVAP 190
Query: 478 SQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVV 518
++ +K LES +DSV+ T D L K+ P EVV+
Sbjct: 191 EKLMEQLK--KLESAMDSVIETASDLVSLSKYGAKPYEVVI 229
Score = 140 (54.3 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
+L ALT ++ + ER E +GD++LK+ + +L+ +HEG+L+ R + VSN L
Sbjct: 1397 LLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNL 1456
Query: 1447 YQYALSKGLQSYIQADRF-APSRWAAPGVLPVFDEDTKDGDSS 1488
Y+ G+ I A++F A W P +P D + D +
Sbjct: 1457 YRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDFKAPNTDDA 1499
Score = 123 (48.4 bits), Expect = 4.1e-70, Sum P(6) = 4.1e-70
Identities = 32/93 (34%), Positives = 51/93 (54%)
Query: 1373 QLKDKINYPVPA-SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1428
QL++KI Y + +++A T AS + T CY+R E LGDA L ++++R+LF Q
Sbjct: 1645 QLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQY 1704
Query: 1429 HEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
G LT +R +V+N + A+ Q + A
Sbjct: 1705 SPGVLTDLRSALVNNTIFASLAVKFEFQKHFIA 1737
Score = 80 (33.2 bits), Expect = 1.1e-65, Sum P(6) = 1.1e-65
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 1608 LLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNN 1667
LL+ A+T S + G+S +R E +GD+ L T +L+ + + G+L+ R+ V+N
Sbjct: 1396 LLLTALT-TSNAADGMSL-ERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSN 1453
Query: 1668 ENFARVAVK 1676
N R+ K
Sbjct: 1454 CNLYRLGKK 1462
Score = 76 (31.8 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 1337 LPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKI 1378
L PEL IHP+ +L LPSI RV +LL +L++ I
Sbjct: 994 LVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRETI 1035
Score = 64 (27.6 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 1249 FYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCK 1308
+YV I E S FP + ++ +Y+ +KY +E+ + Q L+ S
Sbjct: 893 YYVAEILPEWRPSSKFP-------DTHFETFNEYFIKKYKLEIYDQNQSLLDVDFTSTRL 945
Query: 1309 NLLSPRFEH 1317
NLL PR ++
Sbjct: 946 NLLQPRIQN 954
Score = 47 (21.6 bits), Expect = 1.2e-75, Sum P(7) = 1.2e-75
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 502 DRKELEKHVPMPSEV--VVEYDKA-ASLWSLHEQLKQMEVAVEEAAQSSS 548
D K L+K P+P + KA + L EQLK++E A++ +++S
Sbjct: 163 DYKLLKKDKPVPRVLGLTASLIKAKVAPEKLMEQLKKLESAMDSVIETAS 212
Score = 44 (20.5 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 301 EEQARPYQLDVLEQAKKK 318
EEQ + Q D+L+QAK++
Sbjct: 1251 EEQFKKLQNDLLKQAKER 1268
Score = 44 (20.5 bits), Expect = 1.1e-37, Sum P(4) = 1.1e-37
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 251 ERDRLGSNGMVFRLGSWEADHN-RAGKEANGINQECNGK 288
E D++ +F +G W+ + R G E + + +G+
Sbjct: 1093 ENDKIDDGEELFNIGVWDPEEAVRIGVEISSRDDRMDGE 1131
Score = 40 (19.1 bits), Expect = 2.4e-107, Sum P(7) = 2.4e-107
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 589 LRAINYALGELGQWCAYKVAQ 609
L+ +LG W A++ AQ
Sbjct: 280 LKTTRAVFRQLGPWAAWRTAQ 300
Score = 39 (18.8 bits), Expect = 6.3e-38, Sum P(3) = 6.3e-38
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 391 WDAQRWQREFDTKQ-VLVMTAQILLNILRHSIIKME 425
W++ + E++ KQ ++V Q L ++ + SI E
Sbjct: 1053 WNSLAYATEYEEKQTIIVKKIQQLRDLNQKSIEDQE 1088
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 445 (161.7 bits), Expect = 2.8e-92, Sum P(5) = 2.8e-92
Identities = 114/322 (35%), Positives = 182/322 (56%)
Query: 725 IIFVERVVAALVLPKVFAEL----PSLSFVKSASLIGHN-------NSQEMRTFQMQETI 773
IIFVER A+VL ++ E P L+++ S + GH N Q F+ QE +
Sbjct: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEV 504
Query: 774 A-KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832
KFR LL+ATS+ EEG+DI +CN+V+RFDL +Y+QS+GRAR P S+Y+++
Sbjct: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLA 564
Query: 833 ERGNL-SHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV-PGTVYQVESTGA 890
+ + S L+ + E+ LR + + + S D ++ D + P V + + G
Sbjct: 565 DTDKIKSFEEDLKTYKAIEKILRNKCSKSVE-SGETDLEPVVDDDDIFPPYVLRPDDGGP 623
Query: 891 VVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE-KL 949
V++N+A+G I+ YC++LPSD ++ L P+ E P G T YS L LP N+P +
Sbjct: 624 RVTINTAIGHINRYCARLPSDPFTHLAPK--CRTRELPDG-TFYST-LYLPINSPLRASI 679
Query: 950 EGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGEQQEKVDQNDEGE---P-L 1004
GP S +RLA++ V L C+KLH++G D L+P K + + +E++D +DE E P
Sbjct: 680 VGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGR 739
Query: 1005 PGTARHREFYPEGVADILQGEW 1026
PG+ + R+ YP+ + + L+ +
Sbjct: 740 PGSTKRRQCYPKAIPECLRDSY 761
Score = 333 (122.3 bits), Expect = 2.8e-92, Sum P(5) = 2.8e-92
Identities = 89/243 (36%), Positives = 123/243 (50%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSIC----NDLQRQNKKMLAVFLVPK 360
R YQ+++LE A NTI L TG+GKT IAVLL + + D R K+ VFLV
Sbjct: 45 RKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKR--TVFLVNS 102
Query: 361 VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
V QQ +R + VG Y W ++W +EF QVLVMT + LN+L++
Sbjct: 103 ANQVAQQVSAVRTHSDLKVGEYSNLEVNASWTKEKWNQEFTKHQVLVMTCSVALNVLKNG 162
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480
+ + INLL+ DECH A+ HPY +M + S P + G+TAS +N G
Sbjct: 163 YLALSDINLLVFDECHLAILDHPYREIMKLCENCPSC---PRILGLTASILN--GKCDPE 217
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAV 540
+ KI LE L S T D L+++ P E+VV+ L+E+L ME+
Sbjct: 218 ELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLL-MEL-- 274
Query: 541 EEA 543
EEA
Sbjct: 275 EEA 277
Score = 187 (70.9 bits), Expect = 2.8e-92, Sum P(5) = 2.8e-92
Identities = 40/99 (40%), Positives = 57/99 (57%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 1294 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1353
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKD 1484
Y+ KGL S + F P W PG + D+ D
Sbjct: 1354 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTD 1392
Score = 167 (63.8 bits), Expect = 2.8e-92, Sum P(5) = 2.8e-92
Identities = 49/135 (36%), Positives = 66/135 (48%)
Query: 1248 RFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307
RFYV + ++T S FP P EY ++A+YYK KY ++L QPL+ S
Sbjct: 944 RFYVADVYTDLTPLSKFP------SP-EYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 1308 KNLLSPR-FEHSXXXXXXXXXILDKTYYV------FLPPELCFIHPLPGSLVRGAQRLPS 1360
NLL+PR K + L PELC IHP+P SL R A LPS
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPS 1056
Query: 1361 IMRRVESMLLAIQLK 1375
I+ R+ +L A +L+
Sbjct: 1057 ILYRLHCLLTAEELR 1071
Score = 120 (47.3 bits), Expect = 4.1e-85, Sum P(4) = 4.1e-85
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN 1666
GL+++A+T S S G + +RLE +GD+ L H IT +LF +Y + GRL+ +R+ V+
Sbjct: 1292 GLILQALT-LSNASDGFNL-ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1349
Query: 1667 NENFARVAVKHKL 1679
N N R+ K L
Sbjct: 1350 NCNLYRLGKKKGL 1362
Score = 82 (33.9 bits), Expect = 5.2e-54, Sum P(5) = 5.2e-54
Identities = 49/216 (22%), Positives = 94/216 (43%)
Query: 575 ERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQ----NDERANYQLDVKFQ 630
ER + + ++ RA+ L LG WCA KVA + LQ +++ ++ + F
Sbjct: 292 ERDSTLISKQILSDCRAV---LVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFT 348
Query: 631 ESYLSKVVSLLQCELVEGAVSKK--DAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688
+++L KV +L + A+ + KV+ + E ++ E ++ + +
Sbjct: 349 DTFLRKVHALCEGHFSPAALDLRFVTPKVIKLLEILRKYKPYERQQFESVEWY--NNRNQ 406
Query: 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQH--TEDFRAIIFVERVVAALVLPKVFAEL-- 744
+ + + D + +++ K + T IIFVER A+VL ++ E
Sbjct: 407 DNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGK 466
Query: 745 --PSLSFVKSASLIGHN-NSQEMRTFQMQETIAKFR 777
P L+++ S + GH + R QM+ A+FR
Sbjct: 467 QDPELAYISSNFITGHGIGKNQPRNKQME---AEFR 499
Score = 51 (23.0 bits), Expect = 2.8e-92, Sum P(5) = 2.8e-92
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 1530 LSSKTLADVVEALIGVY 1546
++ K++AD VEAL+G Y
Sbjct: 1549 IADKSIADCVEALLGCY 1565
Score = 42 (19.8 bits), Expect = 3.5e-20, Sum P(4) = 3.5e-20
Identities = 38/181 (20%), Positives = 66/181 (36%)
Query: 468 ASPVNLKGVSSQVDCAIKI--CNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525
A NL +S V+ + I CNL + D + + + + P V
Sbjct: 510 AHETNLLIATSIVEEGVDIPKCNLVVRFD-LPTEYRSYVQSKGRARAPISNYVMLADTDK 568
Query: 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL 585
+ S E LK + A+E+ ++ +S G D + ++ DG +
Sbjct: 569 IKSFEEDLKTYK-AIEKILRNKCSKSVES--GETDLEPVVDDDDIFPPYVLRPDDGGPRV 625
Query: 586 IQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCEL 645
IN A+G + ++CA + F T L R D F + + S L+ +
Sbjct: 626 -----TINTAIGHINRYCARLPSDPF-THLAPKCRTRELPDGTFYSTLYLPINSPLRASI 679
Query: 646 V 646
V
Sbjct: 680 V 680
Score = 41 (19.5 bits), Expect = 1.3e-26, Sum P(3) = 1.3e-26
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1904 VGEPMPSVKKAKDSAAVLLLELLNK 1928
VG PM ++ A+ A++ E L+K
Sbjct: 680 VGPPMSCIRLAERVVALICCEKLHK 704
Score = 38 (18.4 bits), Expect = 7.3e-79, Sum P(5) = 7.3e-79
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 1020 DILQGEWILSGRDGCTGSKL 1039
++ G + L+ RD C G+ L
Sbjct: 1183 NLANGSYDLANRDFCQGNHL 1202
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 335 (123.0 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 83/282 (29%), Positives = 144/282 (51%)
Query: 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQR--QNKKMLAVFLV 358
E + R YQL +++ K N I +L TG+GKT +A+L+++ D + ++ A+F+
Sbjct: 5 EIKPRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMC 64
Query: 359 PKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR 418
V L QQA +R T + VG Y GE G D W W E QVLV TAQ+ L+++
Sbjct: 65 NTVELARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVT 124
Query: 419 HSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSS 478
+ + + +++++I+DECHH HP+ M + ++ K P V G+T V +KG +
Sbjct: 125 QTYVALSSLSVVIIDECHHGTGHHPFREFM-RLFTIANQTKLPRVVGLTG--VLIKG-NE 180
Query: 479 QVDCAIKICNLESKLDSVVCTIKDRKELEK---HVPMPSEVVVEYDKAASLWS----LHE 531
+ A K+ LE + T+ D KE+E + P+EV+V + + + +
Sbjct: 181 ITNVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISA 240
Query: 532 QLKQMEVAVE--EAAQSSSRRSKWQFMGARDAGAKEELRQVY 571
++++ V+++ RRSK RD K ++Q++
Sbjct: 241 EIEKFYVSLDLMNIGVQPIRRSK-SLQCLRDPSKKSFVKQLF 281
Score = 259 (96.2 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 82/308 (26%), Positives = 145/308 (47%)
Query: 703 TPKVQSLI---KILLKYQHTEDFRAIIFVER-----VVAALVLPKVFAELPSLSFVKSAS 754
TPKVQ + K+ + +D ++FVER + L+L + P L V +
Sbjct: 364 TPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYI-QSTPELRNVLTPQ 422
Query: 755 -LIGHNN-SQEMRTF---QMQET-IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA 808
++G NN S + + + Q++ I +FRDG L++ +SV EEG+D++ CN V D
Sbjct: 423 FMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDPV 482
Query: 809 KTVLAYIQSRGRARKPGSDYILMI---ERGNLSHATF-LRNARNS-EETLRKEAIERTDL 863
KT Y+QS+GRAR + ++L ER + R A N E L+ +E+T+
Sbjct: 483 KTFNMYVQSKGRARTTEAKFVLFTADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTE- 541
Query: 864 SHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEF-IM 922
L + D P T GAV+ N+A+ ++H YC +P+D + + P F ++
Sbjct: 542 PELYEIKGHFQDDIDPFT----NENGAVLLPNNALAILHRYCQTIPTDAFGFVIPWFHVL 597
Query: 923 ERHEKP-----GGPTEYSCKLQLPCNAPF-EKLEGPVCSSMRLAQQAVCLAACKKLHEMG 976
+ E+ ++ + +P N + + +++ A+ + ACK L+ +G
Sbjct: 598 QEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLG 657
Query: 977 AFTDMLLP 984
+ +P
Sbjct: 658 ELNERFVP 665
Score = 247 (92.0 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 63/180 (35%), Positives = 101/180 (56%)
Query: 1530 LSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGI-QVESDPE-------EVGCPSRPAC 1581
+ +K +AD +EAL+GV G A ++++ I + + D E+G A
Sbjct: 1361 IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGGKKMRAN 1420
Query: 1582 VPESVLRS--VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLD 1638
V + + ++ + LE L FKDR L++A+TH S P++ ++ YQ LEF+GDA+LD
Sbjct: 1421 VNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILD 1480
Query: 1639 HLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFV 1698
LI+ ++F + T + PG LTDLR+A VNN A + V+H+LH + ++ L I FV
Sbjct: 1481 FLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFV 1540
Score = 152 (58.6 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 37/121 (30%), Positives = 64/121 (52%)
Query: 1359 PSIMRRVESMLLAIQLKDKINY-PVPASKILEALTAASCQETFCYERAELLGDAYLKWVV 1417
P++ +V+ +L+ + K + P + L A+TA+S + F ER E+LGD++LK
Sbjct: 1165 PTVRGKVKPLLILQKTVSKEHITPAEQGEFLAAITASSAADVFDMERLEILGDSFLKLSA 1224
Query: 1418 SRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPS-RWAAPGV-L 1475
+ +L KY +EG LT ++ ++VSN L + + + +F P W PG+ L
Sbjct: 1225 TLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGISL 1284
Query: 1476 P 1476
P
Sbjct: 1285 P 1285
Score = 94 (38.1 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 1721 PKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPET--LPMHPVRELQE 1773
PK LGD++E++ A++LD RD W+V L +P + T +P++ +R+L E
Sbjct: 1609 PKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHIRQLVE 1662
Score = 90 (36.7 bits), Expect = 2.9e-58, Sum P(6) = 2.9e-58
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 1387 ILEALTAASCQE---TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1443
+L+ALT S T Y+ E +GDA L +++S ++F + + G LT +R +V+N
Sbjct: 1450 LLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNN 1509
Query: 1444 LVLYQYALSKGLQSYIQAD 1462
L + L +I A+
Sbjct: 1510 TTLACICVRHRLHFFILAE 1528
Score = 87 (35.7 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 41/151 (27%), Positives = 66/151 (43%)
Query: 1234 DLEGRIVTA--AHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGV-- 1289
D EG+IVT A+ K V + E+T S + + + +Y ++ KYG
Sbjct: 876 DFEGKIVTQWYANYDKPMLVTKVHRELTPLSYMEKNQ------QDKTYYEFTMSKYGNRI 929
Query: 1290 -ELIFKKQPLIRGRGVSYCKNLLSPRFEHSXXXXXXXXXILDKTYYVFLPPELCFIHPLP 1348
+++ K + +I R ++ + L + H+ K V L PELCF P
Sbjct: 930 GDVVHKDKFMIEVRDLT--EQLTF--YVHNRGKFNAKSKAKMK---VILIPELCFNFNFP 982
Query: 1349 GSLVRGAQRLPSIMRRVESMLLAIQLKDKIN 1379
G L LPSI+ R+ +L A L+ + N
Sbjct: 983 GDLWLKLIFLPSILNRMYFLLHAEALRKRFN 1013
Score = 80 (33.2 bits), Expect = 3.1e-57, Sum P(6) = 3.1e-57
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 1605 DRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAA 1664
++G + AIT +S ++ V +RLE +GD+ L T +L Y++ G LT++++
Sbjct: 1190 EQGEFLAAITASS--AADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKL 1247
Query: 1665 VNNEN 1669
V+N N
Sbjct: 1248 VSNRN 1252
Score = 59 (25.8 bits), Expect = 2.2e-34, Sum P(7) = 2.2e-34
Identities = 13/68 (19%), Positives = 33/68 (48%)
Query: 429 LLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICN 488
L IL + + V+ ++H +++R +FG++A ++ ++ V+C ++
Sbjct: 572 LAILHRYCQTIPTDAFGFVIP-WFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTI 630
Query: 489 LESKLDSV 496
+D+V
Sbjct: 631 YSDPMDNV 638
Score = 46 (21.3 bits), Expect = 2.0e-85, Sum P(7) = 2.0e-85
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 139 RLSDHFTKENGV 150
RL DH TK NG+
Sbjct: 14 RLVDHLTKSNGI 25
Score = 44 (20.5 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1901 DECVGEPMPSVKKAKDSAAVLLLELL 1926
D +PM +VK AK SAA ++L
Sbjct: 628 DTIYSDPMDNVKTAKISAAFKACKVL 653
Score = 43 (20.2 bits), Expect = 2.2e-59, Sum P(6) = 2.2e-59
Identities = 30/108 (27%), Positives = 43/108 (39%)
Query: 1649 YTNLPPGRLTDLRAAAVNNEN--FARVAVKHKLH-VHLRHGSSALDRQIRDF-VKEVLEE 1704
YT LPPG A+ EN FA++ H L + L S + D +E
Sbjct: 1275 YTWLPPGISLPHNVLALWRENPEFAKIIGPHNLRDLALGDEESLVKGNCSDINYNRFVEG 1334
Query: 1705 LLKPG--------FNS---FGLGDCKAP-KVLGDIVESIAGAIFLDSG 1740
G F+S F +G P KV+ D +E++ G I + G
Sbjct: 1335 CRANGQSFYAGADFSSEVNFCVGLVTIPNKVIADTLEALLGVIVKNYG 1382
Score = 40 (19.1 bits), Expect = 7.8e-63, Sum P(7) = 7.8e-63
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 891 VVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEK 927
++ + + L+H + + D I P F+++R K
Sbjct: 789 IIQNSEQLELLHQFHGMVFRDILKIWHPFFVLDRRSK 825
Score = 40 (19.1 bits), Expect = 9.4e-29, Sum P(5) = 9.4e-29
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 377 YVVGHYCGEMGQ-DFWDAQRWQR 398
+ VG+ C EM + DF D + W +
Sbjct: 1113 FSVGNVC-EMNEMDFEDKEYWAK 1134
Score = 38 (18.4 bits), Expect = 4.4e-48, Sum P(5) = 4.4e-48
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1906 EPMPSVKKAKDSAAVL-LLELLNKW 1929
EPMP+ K + S A L + E N W
Sbjct: 1063 EPMPT-KSIEASVANLEITEFENPW 1086
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 340 (124.7 bits), Expect = 6.6e-85, Sum P(4) = 6.6e-85
Identities = 96/291 (32%), Positives = 148/291 (50%)
Query: 702 VTPKVQSLIKIL-LKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760
VT KV L+++L Y+ ++ R +IFVER A L +F + +L +++ S IGH
Sbjct: 341 VTDKVFKLLELLKATYRKSDSVRTVIFVERKATAFTL-SLFMKTLNLPNIRAHSFIGHGP 399
Query: 761 SQE---MRTFQMQ-ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816
S + TF+ Q +T+ KF+ G+ +L+AT+VAEEG+D+ CN+VIRF++ +TV Y+Q
Sbjct: 400 SDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQ 459
Query: 817 SRGRARKPGSDYILMIERGNLS-HATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISV 875
SRGRAR S +++ + L H L +N + L E L R
Sbjct: 460 SRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFAL-SELSNSNIFDSLVCEERERVT 518
Query: 876 DAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYS 935
D + VY+V TGA+++ AV L++ +C+ L D Y+ P F + P Y
Sbjct: 519 DDI---VYEVGETGALLTGLYAVSLLYNFCNTLSRDVYTRYYPTFTAQ----PCLSGWYC 571
Query: 936 CKLQLP--CNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLP 984
+++LP C P +G S+R A+Q C L MG L P
Sbjct: 572 FEVELPKACKVP--AAQGSPAKSIRKAKQNAAFIMCLDLIRMGLIDKHLKP 620
Score = 308 (113.5 bits), Expect = 6.6e-85, Sum P(4) = 6.6e-85
Identities = 83/227 (36%), Positives = 119/227 (52%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICND---LQRQN--KKMLAVFLVP 359
R YQ DV A K+NT+ + TGAGKTL+AV LI+ + +Q N K ++VFLV
Sbjct: 13 RKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNLEHKKISVFLVN 72
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
KVPLV+QQAE IR Q VG + GE+ + + Q V+V+TA + L
Sbjct: 73 KVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSE-QLLTNIILKYNVIVITADLFYLFLAR 131
Query: 420 SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT----SKEK--RPSVFGMTASPVNL 473
+ + +NL+I DECHHA+ Y+ +M++FYH SK+ P +FGMTASP
Sbjct: 132 GFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPRIFGMTASPFTG 191
Query: 474 KGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEY 520
K + + ++ E DS + + EL + +P E V Y
Sbjct: 192 K----KGNLYHRLYQWEQLFDSKAHVVSEN-ELADYFCLPEESYVMY 233
Score = 248 (92.4 bits), Expect = 6.6e-85, Sum P(4) = 6.6e-85
Identities = 73/219 (33%), Positives = 122/219 (55%)
Query: 1530 LSSKTLADVVEALIGVYYVEGGKDAANHLMKW--IGIQVESDPEEVGCPSRPACVPESVL 1587
LS K +AD+VEA IG ++ G D+A + K +G+ S+ +E +S L
Sbjct: 1017 LSVKRIADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADS-L 1075
Query: 1588 RSVDF---HALEDALKIKFKDRGLLVEAITHASRPSS-GV-SCYQRLEFVGDAVLDHLIT 1642
R+V F +E+ + FK++ LL A H S S G+ YQ+LEF+GDAVLD++I
Sbjct: 1076 RNVQFPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIV 1135
Query: 1643 KHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVL 1702
++L+ Y N G LTD ++ V N++ + + LH +++H S+A+ I ++ +E++
Sbjct: 1136 QYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEY-QELI 1194
Query: 1703 EELLKPGF-NSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740
E + N + + +PK + D +E++ AIFLDSG
Sbjct: 1195 EAFRETASENPWFWFEIDSPKFISDTLEAMICAIFLDSG 1233
Score = 168 (64.2 bits), Expect = 6.6e-85, Sum P(4) = 6.6e-85
Identities = 44/142 (30%), Positives = 67/142 (47%)
Query: 1343 FIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCY 1402
+I P+ L A +PSI+ +E++L+A + +ALT+A Q F Y
Sbjct: 870 YILPVSRHLKNSALLIPSILYHIENLLVASSFIEHFRLDCKIDTACQALTSAESQLNFDY 929
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQAD 1462
+R E GD +LK S +FLK+P E QL R++++SN LY+ A+ L Y +
Sbjct: 930 DRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALST 989
Query: 1463 RFAPSRWAAPGVLPVFDEDTKD 1484
W G F + T D
Sbjct: 990 PLEIRHWCPYG----FQKSTSD 1007
Score = 101 (40.6 bits), Expect = 2.9e-55, Sum P(5) = 2.9e-55
Identities = 22/64 (34%), Positives = 33/64 (51%)
Query: 1402 YERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461
Y++ E LGDA L +++ ++L+ KYP G+LT + V N L L YIQ
Sbjct: 1119 YQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQH 1178
Query: 1462 DRFA 1465
+ A
Sbjct: 1179 ESAA 1182
Score = 74 (31.1 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1626 YQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRH 1685
Y RLEF GD L + +F + + +L R ++N N +VA+ +L +
Sbjct: 929 YDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYAL- 987
Query: 1686 GSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSV 1745
S+ L+ IR + ++ + + + K + D+VE+ GA LDSG D+++
Sbjct: 988 -STPLE--IRHWCPYGFQKSTSDKCR-YAVLQKLSVKRIADMVEASIGACLLDSGLDSAL 1043
Score = 50 (22.7 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 1905 GEPMPSVKKAKDSAA-VLLLELL 1926
G P S++KAK +AA ++ L+L+
Sbjct: 587 GSPAKSIRKAKQNAAFIMCLDLI 609
Score = 47 (21.6 bits), Expect = 2.5e-27, Sum P(3) = 2.5e-27
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 325 ETGAGKT-LIAVLLIRSICNDLQR 347
ETGA T L AV L+ + CN L R
Sbjct: 527 ETGALLTGLYAVSLLYNFCNTLSR 550
Score = 47 (21.6 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 18/91 (19%), Positives = 43/91 (47%)
Query: 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAA---LVLPKV-FAELPSLSFVKSASLI 756
K ++ + LLK Q EDF +E V ++ L+ ++ + SF + +++
Sbjct: 1257 KAKGDIEHKVYQLLKDQGCEDFGTKCVIEEVKSSHKTLLNTELHLTKYYGFSFFRHGNIV 1316
Query: 757 GHNNSQEMRT--FQMQETIAKFRDGRVTLLV 785
+ S+++ + M++ + K + + LL+
Sbjct: 1317 AYGKSRKVANAKYIMKQRLLKLLEDKSNLLL 1347
Score = 41 (19.5 bits), Expect = 2.6e-63, Sum P(4) = 2.6e-63
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 1527 YRVLSSKTLADVVEALIGVYYVEGG 1551
+ + S K ++D +EA+I +++ G
Sbjct: 1209 FEIDSPKFISDTLEAMICAIFLDSG 1233
Score = 39 (18.8 bits), Expect = 1.4e-49, Sum P(4) = 1.4e-49
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1168 YGFGKLRHG--MAFGQ 1181
YGF RHG +A+G+
Sbjct: 1305 YGFSFFRHGNIVAYGK 1320
Score = 39 (18.8 bits), Expect = 3.3e-41, Sum P(3) = 3.3e-41
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVF--AELP 745
K+ + I + LK+ T++++ +++++ L KV ELP
Sbjct: 941 KLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELP 983
Score = 38 (18.4 bits), Expect = 2.9e-55, Sum P(5) = 2.9e-55
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1060 LTQVSDFAVLFSSELDAELASLKNFHVRLMSI 1091
+ + S A L S LD+ L K+ V L+ I
Sbjct: 1025 MVEASIGACLLDSGLDSALKICKSLSVGLLDI 1056
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 391 (142.7 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 99/245 (40%), Positives = 136/245 (55%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHAS-RPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650
F E++L KF+DR L++A+THAS P+ CYQRLEF+GDAVLD+LIT+HL+
Sbjct: 1993 FEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPR 2052
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEE--LLKP 1708
PG LTDLR+A VNN FA +AV+H H RH S L+ I FV+ E +
Sbjct: 2053 QHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISE 2112
Query: 1709 GFNSFGLGDC------KAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP-- 1760
+ +C + PK LGD+ ESIAGAIFLDS VVW V+ ++ P +
Sbjct: 2113 EYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFS 2172
Query: 1761 ETLPMHPVRELQERCQQQAE-GLEYKASRSGNL-ATVEVYIDGVQVGVAQNPQ--KKMAQ 1816
++P P+REL E + A+ G K + + TV+V+ G G+ +N + K A
Sbjct: 2173 NSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAA 2232
Query: 1817 KLAAR 1821
K A R
Sbjct: 2233 KCALR 2237
Score = 180 (68.4 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 36/99 (36%), Positives = 60/99 (60%)
Query: 1376 DKINYPVPA-SKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLT 1434
D + +P P+ S IL+ALT ++ + ER E +GD++LK+ ++ +L++ Y HEG+L+
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1773
Query: 1435 RMRQQMVSNLVLYQYALSKGLQSYIQADRFAP-SRWAAP 1472
+R + V+NL LY+ K L Y+ A +F P W P
Sbjct: 1774 HLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPP 1812
Score = 173 (66.0 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 48/146 (32%), Positives = 75/146 (51%)
Query: 888 TGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE 947
TGA V L SA+ L++ YC++LPSD ++ L + R+E+ G T + L+LP N+P +
Sbjct: 816 TGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNER-AGVTLFQYTLRLPINSPLK 874
Query: 948 K-LEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVD-------QND 999
+ G + LA++ L AC +LH +G D L P G + + D D
Sbjct: 875 HDIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPED 934
Query: 1000 E------GEPLPGTARHREFYPEGVA 1019
E EP PGT + R++Y + +A
Sbjct: 935 EQIVQLSDEPRPGTTKRRQYYYKRIA 960
Score = 142 (55.0 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 34/120 (28%), Positives = 68/120 (56%)
Query: 724 AIIFVERVVAALVLPKVFAEL----PSLSFVK---SASLIGHNNSQ----EMRTFQMQET 772
A+I+ + A VL ++ AE+ P L F++ + + ++ E+ + +E
Sbjct: 495 ALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEHRRQEEV 554
Query: 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832
+ +FR +L+ TSV EEG+D+ +CN+V+R+D T +Y+Q +GRAR + +++++
Sbjct: 555 LKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPAYHVILV 614
Score = 130 (50.8 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 42/138 (30%), Positives = 61/138 (44%)
Query: 1249 FYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCK 1308
FYV I ++ S FP G Y ++ YY KYG+ + QPL+ S
Sbjct: 1149 FYVAEICPHLSPLSCFP------GD-NYRTFKHYYLVKYGLTIQNTSQPLLDVDHTSARL 1201
Query: 1309 NLLSPRFEHSXXXXXXXXXILDKT-------YYVFLPPELCFIHPLPGSLVRGAQRLPSI 1361
N L+PR+ + K L PELC +HP P SL R A LP I
Sbjct: 1202 NFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVHPFPASLWRTAVCLPCI 1261
Query: 1362 MRRVESMLLAIQLKDKIN 1379
+ R+ +LLA ++ +++
Sbjct: 1262 LYRINGLLLADDIRKQVS 1279
Score = 124 (48.7 bits), Expect = 5.3e-37, Sum P(5) = 5.3e-37
Identities = 31/108 (28%), Positives = 58/108 (53%)
Query: 1359 PSIMRRVESMLLAIQ-LKDKINYPV-PASKILEALTAASCQE---TFCYERAELLGDAYL 1413
P+ ++ +L + ++ + Y S +L+A+T AS T CY+R E LGDA L
Sbjct: 1980 PNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVL 2039
Query: 1414 KWVVSRFLFLKYPQKHE-GQLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
++++R L+ + P++H G LT +R +V+N + A+ G + +
Sbjct: 2040 DYLITRHLY-EDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFR 2086
Score = 115 (45.5 bits), Expect = 4.4e-36, Sum P(5) = 4.4e-36
Identities = 29/117 (24%), Positives = 63/117 (53%)
Query: 1564 IQVESDPEEVGCPSRPACVPESVLRS-VDFHALEDALKIKFKDRGLLVEAITHASRPSSG 1622
++++ + E+ P+ + ++L + F D + ++++A+T S + G
Sbjct: 1680 LKLQYERIEIEPPTSTKAITSAILPAGFSFDRQPDLVGHPGPSPSIILQALT-MSNANDG 1738
Query: 1623 VSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKL 1679
++ +RLE +GD+ L + IT +L+ +Y N+ G+L+ LR+ V N N R+ + +L
Sbjct: 1739 INL-ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRL 1794
Score = 100 (40.3 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 45/220 (20%), Positives = 96/220 (43%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R +Q+++L A ++NTI L + K IA+ L++ + +R + ++V+L +V
Sbjct: 18 RDFQVELLATAYERNTIICLGHRSSKEFIALKLLQELSRRARRHGR--VSVYLSCEVGTS 75
Query: 365 YQQAEVIREQTGYVVGHYCG-EMGQDFWDAQ-RWQREFDTKQVLVMTAQILLNILRHSII 422
+ + T H + Q+ D Q + + V ++ + L +L +
Sbjct: 76 TEPCSIYTMLT-----HLTDLRVWQEQPDMQIPFDHCWTDYHVSILRPEGFLYLLETREL 130
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDC 482
+ ++ L++L++CH + + RP + G+ A P++ G Q
Sbjct: 131 LLSSVELIVLEDCHDSAVYQRIRPLFENHIMPAPPADRPRILGL-AGPLHSAGCELQQLS 189
Query: 483 AIKICNLESKLDSVVCTIKDRKELE---KHVPMPSEVVVE 519
A+ + LE SV+C I+ ++ ++ P E +V+
Sbjct: 190 AM-LATLEQ---SVLCQIETASDIVTVLRYCSRPHEYIVQ 225
Score = 89 (36.4 bits), Expect = 3.8e-83, Sum P(7) = 3.8e-83
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 1526 SYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQV 1566
S + K++AD VEALIG Y +E G A M W+G++V
Sbjct: 1894 SQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRV 1934
Score = 77 (32.2 bits), Expect = 9.0e-81, Sum P(7) = 9.0e-81
Identities = 39/212 (18%), Positives = 85/212 (40%)
Query: 405 VLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVF 464
V ++ + L +L + + ++ L++L++CH + + RP +
Sbjct: 113 VSILRPEGFLYLLETRELLLSSVELIVLEDCHDSAVYQRIRPLFENHIMPAPPADRPRIL 172
Query: 465 GMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE---KHVPMPSEVVVEYD 521
G+ A P++ G Q A+ + LE SV+C I+ ++ ++ P E +V+
Sbjct: 173 GL-AGPLHSAGCELQQLSAM-LATLEQ---SVLCQIETASDIVTVLRYCSRPHEYIVQ-- 225
Query: 522 KAASLWSLHE-QLKQMEVA-VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTES 579
+ + + E L +V ++ R ++ G +EL+ +
Sbjct: 226 --CAPFEMDELSLVLADVLNTHKSFLLDHRYDPYEIYGTDQF--MDELKDI--------P 273
Query: 580 DGAANLIQKLRAINYALGELGQWCAYKVAQSF 611
D + + + ++ L E+G WC + A F
Sbjct: 274 DPKVDPLNVINSLLVVLHEMGPWCTQRAAHHF 305
Score = 52 (23.4 bits), Expect = 8.2e-61, Sum P(6) = 8.2e-61
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 1059 FLTQVSDFAVLFSSELDAELASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSD 1118
++ Q + F + EL LA + N H S +LD +PY + + + + D
Sbjct: 222 YIVQCAPFEM---DELSLVLADVLNTH---KSFLLDHRYDPYEI-YGTDQFMDELKDIPD 274
Query: 1119 KSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNER 1159
VDP+N ++ L+ + + W QRA Y NE+
Sbjct: 275 PKVDPLNVIN-SLLVVLHEMGPWCT--QRAAHHFYQ-CNEK 311
Score = 50 (22.7 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
Identities = 24/101 (23%), Positives = 46/101 (45%)
Query: 758 HNNSQEMRTFQMQETIAKFR----DGRVTLLVATSVAEEGLDIRQCNV--VIRFDLAKTV 811
H + +E T + +E+IAK + G + + + + D + V V +L K +
Sbjct: 1556 HEDQKEPATIRYEESIAKLKTEIESGGMLVPHDQQLVLKRSDAAEAQVAKVSMMELLKQL 1615
Query: 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEET 852
L Y+ A+K G L++ +A ++ AR+ +ET
Sbjct: 1616 LPYVNEDVLAKKLGDRRELLLSDLVELNADWV--ARHEQET 1654
Score = 48 (22.0 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 1871 LYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAV 1920
L+RC R A F Y +R+ + + VG PMP+ A+ AA+
Sbjct: 847 LWRCTRNER-AGVTLFQYTLRL-PINSPLKHDIVGLPMPTQTLARRLAAL 894
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 316 (116.3 bits), Expect = 1.6e-82, Sum P(6) = 1.6e-82
Identities = 101/309 (32%), Positives = 154/309 (49%)
Query: 699 DGKVTPKVQSLIKILLKYQHTED--FRAIIFVERVVAALVLPKVFAELPSL-SFVKSASL 755
D V+PK ++LI L+ TED F +IFVE+ A V+ + + PS ++ S
Sbjct: 326 DFPVSPKFEALISFLMS---TEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRDRFRTGSF 382
Query: 756 IGHNNSQEMRTF-------QMQ-ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
IG +NS +T +MQ +T+ FR GR L+VAT V +EG+D+ C+VVI +++
Sbjct: 383 IGMSNSTNRKTMLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNI 442
Query: 808 AKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLK 867
K ++IQ RGRAR+ S Y +M+ + + L + E+ + + +E D +
Sbjct: 443 PKGFESFIQRRGRARRQNSTYSMMLSTED--DGSTLDKWQKFEKIMEEACLE--DRRRTE 498
Query: 868 DTSRLISVDAVPGTVYQVESTGAVVSLNSAVG-LIHFYCSQLPSDRYSILRPEFIMERHE 926
+ L S+D T + V STGA+++ A+ L+HF C LP Y +PEF ER++
Sbjct: 499 ELRALGSLDEDVCTRFCVRSTGAILTAEYAMQHLVHF-CDTLPRQNYVEDKPEFSFERND 557
Query: 927 KPGGPTEYSCKLQLPCNAPFEKLEGPVC-SSMRLAQQAVCLAACKKLHEMGAFTDMLLPD 985
GG L N + EG + R A++ A K L+E G D LLP
Sbjct: 558 --GGLLRAKVILPSSVNPKVRRAEGKAWWKTERAAKKEAAFYAYKALYEHGLVNDNLLPL 615
Query: 986 KGSGEQQEK 994
S E K
Sbjct: 616 TKSREFTRK 624
Score = 288 (106.4 bits), Expect = 1.6e-82, Sum P(6) = 1.6e-82
Identities = 82/244 (33%), Positives = 124/244 (50%)
Query: 296 KEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAV 355
+E+ E +AR YQL++ E + K N I + TG+GKT IA+L I ++L+ + K++
Sbjct: 6 EERSAEHRARSYQLEMFEASLKGNIIVVMGTGSGKTQIALL---RIIHELENSDGKLIW- 61
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH-YCGEMGQDFWDAQR-WQREFDTKQVLVMTAQIL 413
FL P VPL QQ VI + V G + W Q W + QV+V T +L
Sbjct: 62 FLAPTVPLCLQQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAVL 121
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPS----VFGMTAS 469
+ + H +++ + LLI DE HH ++KHP +++M FYH +E P + G+TAS
Sbjct: 122 HDAMTHGFVRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTAS 181
Query: 470 PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKD--RKELEKHVPMPSEVVVEYD----KA 523
G S + + +E L+SV CT R+EL ++ MP V Y +
Sbjct: 182 A----GSSRE-----GLQTIEMNLNSV-CTTPQAHRQELLEYTHMPELRRVLYTPLMKEN 231
Query: 524 ASLW 527
ASLW
Sbjct: 232 ASLW 235
Score = 221 (82.9 bits), Expect = 1.6e-82, Sum P(6) = 1.6e-82
Identities = 57/157 (36%), Positives = 84/157 (53%)
Query: 1524 SSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCP-SRPACV 1582
S+S R +S+K LADVVEALIG Y++GG A + ++E ++ P S P
Sbjct: 987 SASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPRPESMPMSK 1046
Query: 1583 PESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRP-SSGVSCYQRLEFVGDAVLDHLI 1641
+ LE+ + FKD+ LL+EA+TH S P + + YQRLEF+GDAVLD LI
Sbjct: 1047 DHKKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLI 1106
Query: 1642 TKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK 1678
+ + G +T ++ A VN A + ++ K
Sbjct: 1107 VDLIRAHHVECQQGEMTKIKHAIVNGHLLAFLCMQFK 1143
Score = 193 (73.0 bits), Expect = 1.6e-82, Sum P(6) = 1.6e-82
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 1342 CFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKILEALTAAS---CQE 1398
C I LP S + +P I+ R+E+ L+A +L + + + + +TA + Q
Sbjct: 845 CTIDRLPASETVFGRFIPVILDRLEAALVATRLCETVLRDIQFQDLRHVITAITMPLAQA 904
Query: 1399 TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
Y+R E GD+ LK+ V+ LF P HEG LT +V N L + AL +GL +Y
Sbjct: 905 PTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAY 964
Query: 1459 IQADRFAPSRWAAP 1472
I ++RF P +W+AP
Sbjct: 965 IISNRFTPRKWSAP 978
Score = 140 (54.3 bits), Expect = 7.8e-56, Sum P(4) = 7.8e-56
Identities = 58/196 (29%), Positives = 92/196 (46%)
Query: 1596 EDALK-IKFKDRGLLVEAITH--ASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNL 1652
E L+ I+F+D ++ AIT A P+ YQR EF GD+VL + LF++ N
Sbjct: 879 ETVLRDIQFQDLRHVITAITMPLAQAPTD----YQRYEFFGDSVLKFTVAASLFYNNPNW 934
Query: 1653 PPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNS 1712
G LT+ A V N R A+ L ++ S+ R + ++ E L ++
Sbjct: 935 HEGYLTETLHALVQNARLTRAALDQGLDAYII--SNRFTP--RKWSAPLISEKLYASAST 990
Query: 1713 FGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV-FQPLLD-P---MVTPETLPMHP 1767
+ + KVL D+VE++ GA ++D G + V F P ++ P + PE++PM
Sbjct: 991 RSM----SAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPRPESMPMSK 1046
Query: 1768 VRELQERCQQQAEGLE 1783
+ QQ E LE
Sbjct: 1047 DHKKPHLIQQ--ENLE 1060
Score = 88 (36.0 bits), Expect = 1.9e-50, Sum P(4) = 1.9e-50
Identities = 44/195 (22%), Positives = 84/195 (43%)
Query: 1374 LKDKINYPVPASKIL-EALTAASCQ-ETFC--YERAELLGDAYLKWVVSRFLFLKYPQKH 1429
L++ I Y +L EALT SC +T Y+R E LGDA L ++ + + +
Sbjct: 1059 LENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQ 1118
Query: 1430 EGQLTRMRQQMVSNLVL------YQYALSKGLQSYIQADRFAPSRWAAPG--VLPVFD-- 1479
+G++T+++ +V+ +L +++A+ L I + +P L ++
Sbjct: 1119 QGEMTKIKHAIVNGHLLAFLCMQFKWAMPSPLTPSIDTGTETETEIISPPPKTLSLYSYL 1178
Query: 1480 EDTKDGDSSLFDQEKSVAEDKLGTDKNYNXXXXXXXXXXXXXXXSSSYRVL-SSKTLADV 1538
+ L + +S + + L T N S + + + K +DV
Sbjct: 1179 RYSPSRPLPLHVEPESGSSNAL-TRHNLLCPSILHALNNTTAYPWSLFSAIHADKFFSDV 1237
Query: 1539 VEALIGVYYVEGGKD 1553
VE++IG +V+ G D
Sbjct: 1238 VESIIGAIFVDSGGD 1252
Score = 79 (32.9 bits), Expect = 1.6e-82, Sum P(6) = 1.6e-82
Identities = 35/111 (31%), Positives = 46/111 (41%)
Query: 1679 LHVHLRHGSS-ALDRQIRDFVKEVLEELLKPGFNSFGLGDC-KAPKVLGDIVESIAGAIF 1736
LHV GSS AL R +L L + L A K D+VESI GAIF
Sbjct: 1188 LHVEPESGSSNALTRH-NLLCPSILHALNNTTAYPWSLFSAIHADKFFSDVVESIIGAIF 1246
Query: 1737 LDSGRDTSVVWQVFQPL----LDPMVTPETLPM-HPVRELQERCQQQAEGL 1782
+DSG D + L + + E + + HP + Q Q+ A L
Sbjct: 1247 VDSGGDLGACAGFIERLGLVRIAKRILDERVDVTHPTQRAQIELQKLAARL 1297
Score = 43 (20.2 bits), Expect = 1.6e-82, Sum P(6) = 1.6e-82
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQE-SYLSKVVS 639
ELG W A ++ + L + + ++D+ + E YL ++S
Sbjct: 268 ELGIWAAEYFIRASVEELLSHAYVHSKIDLDYDEREYLVNILS 310
Score = 43 (20.2 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 1861 ICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWT 1900
IC N P ++ G A + TY++ ++T D G T
Sbjct: 438 ICY--NIPKGFESFIQRRGRARRQNSTYSMMLSTEDDGST 475
Score = 43 (20.2 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 645 LVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV---VSGGEHVDVIIGAAVADGK 701
+V G +SK+DA++ + N +E +E G L ++ + G VD+ + + G
Sbjct: 1369 VVTGCLSKEDAEI-QAANLVIEL-VGRLESGRLYKKNMDLDIDTGVQVDLDLDMNLDPGI 1426
Query: 702 VT 703
T
Sbjct: 1427 TT 1428
Score = 41 (19.5 bits), Expect = 4.0e-21, Sum P(4) = 4.0e-21
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 689 VDVIIGAAVADGKVTPKVQSLI 710
V+ +IGAA DG + K QS I
Sbjct: 1002 VEALIGAAYIDGGLH-KAQSCI 1022
Score = 39 (18.8 bits), Expect = 3.8e-29, Sum P(4) = 3.8e-29
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 251 ERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLD 310
+R R G ++F+ W NR+G + EC+ K+ ++ + RP + +
Sbjct: 780 DRSRYGEL-LIFK--RWL---NRSGD----LELECDPYPSKRRNLLQRQTLAKKRPAEDE 829
Query: 311 VLEQAKKKNTIA 322
+L KK ++
Sbjct: 830 ILGSPTKKRILS 841
Score = 38 (18.4 bits), Expect = 1.3e-38, Sum P(5) = 1.3e-38
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 1445 VLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDS-SLFDQ--EKSVAEDKL 1501
V+ Y + KG +S+IQ A + + ++ ++D D F++ E++ ED+
Sbjct: 436 VVICYNIPKGFESFIQRRGRARRQNSTYSMMLSTEDDGSTLDKWQKFEKIMEEACLEDRR 495
Query: 1502 GTDK 1505
T++
Sbjct: 496 RTEE 499
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 322 (118.4 bits), Expect = 2.6e-70, Sum P(5) = 2.6e-70
Identities = 119/411 (28%), Positives = 190/411 (46%)
Query: 256 GSNGMVF-RLG-SWEADHN-RAGKEANGINQECNGKVGKKSEAKEKMPEEQ-ARPYQLDV 311
G G VF R + AD+ + G A+ + + + ++ + P AR YQL++
Sbjct: 14 GEGGHVFGRENLNQSADYGYKTGSSAS-THSTTDDAISEEPQPSGNGPRSIIARAYQLEM 72
Query: 312 LEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371
+ + ++N I ++TG+GKT +AVL IR+ +L+R + FL P V L QQ EVI
Sbjct: 73 FQASMQQNIIVSMDTGSGKTQVAVLRIRA---ELERTPPEKRVWFLAPTVALCAQQYEVI 129
Query: 372 REQTGYVVGHYC-GEMGQDFW-DAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINL 429
R Q G+ D W D Q W +V+V T IL L H+ + M++I+L
Sbjct: 130 RSQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALSHAFVTMDSISL 189
Query: 430 LILDECHHAVKKHPYSLVMSEFY--HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC 487
L++DE H+ K P L+M FY ++ + P + G+TASPV +SS D
Sbjct: 190 LVMDEAHNCTGKFPGRLIMKRFYMPRKSAGDHVPHILGLTASPVMKSDLSSMED------ 243
Query: 488 NLESKLDSVVC---TIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQME---VAVE 541
LES LDSV C T++ R+EL +V P+ V Y K L S + + M +A E
Sbjct: 244 -LESSLDSV-CRGPTLQ-REELFANVHQPTMTVTTY-KECDLRSPVQYTRNMNNLHLAFE 299
Query: 542 EAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQ 601
+ MG R + EL ++ + T + +Q R + ELGQ
Sbjct: 300 NL-DIAEDPYVLHLMGQRTPKSLRELDRILTKLD-TYTQNQMKALQ--RKSSSLFRELGQ 355
Query: 602 WCAYKVAQSFLTALQN-DERANYQLD-VKFQESYLSKVVSLLQCELVEGAV 650
W + + + N D R+++ + ++ YL + + + V A+
Sbjct: 356 WAVDSYIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINALPVSAAI 406
Score = 254 (94.5 bits), Expect = 2.6e-70, Sum P(5) = 2.6e-70
Identities = 99/330 (30%), Positives = 158/330 (47%)
Query: 693 IGAAVADGKVTP-KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF-V 750
+ AA+ ++T K+Q L++IL Y+ + I+FV+ A +L ++ A +P ++
Sbjct: 402 VSAAIPAPEMTSIKLQVLLRILRGYEGSPV--GIVFVKERATAGILSQLLAIIPDINARY 459
Query: 751 KSASLIGHNN--SQEMRTFQ-MQE-----TIAKFRDGRVTLLVATSVAEEGLDIRQCNVV 802
K ++G + S++M + +Q+ + KFR G + LLVATSV EEG+D+ CN+V
Sbjct: 460 KVGCMVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCNLV 519
Query: 803 IRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTD 862
I FD+ + ++IQ RGRAR S LMIE +L A + R E R +
Sbjct: 520 ICFDMPANLKSFIQRRGRARMRESKLHLMIEEDSLVSVKDW-GALEAAMKQRYENDMR-E 577
Query: 863 LSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLP-SDRYSILRPEFI 921
L HL +D P +T A V+++ A G + +C + S +Y PE++
Sbjct: 578 LDHLAQVEEEDEMDVPP---LHSRTTAAKVTVDDAKGHLEHFCRVVTRSQQYVDASPEYL 634
Query: 922 MERHEKP--GG-PTEY-SCKLQLPCNAPFEKLEGPVCS----SMRLAQQAVCLAACKKLH 973
+ GG P + LP + P L S S R A++ L A K L+
Sbjct: 635 VTTKTTAFVGGKPIPILGVTVLLPASLP-PNLRQAHSSRDWISERNAKKDAALQAYKMLY 693
Query: 974 EMGAFTDMLLPDKGSGEQQEKVDQNDEGEP 1003
E G + LLP + S + VD+ +G P
Sbjct: 694 EAGLINEHLLPIRES----DFVDREVDGRP 719
Score = 201 (75.8 bits), Expect = 2.6e-70, Sum P(5) = 2.6e-70
Identities = 69/195 (35%), Positives = 96/195 (49%)
Query: 1528 RVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVL 1587
R +SSKTLADV EALIG Y+EGG A ++ I + + ++ SR A + + L
Sbjct: 1104 RKMSSKTLADVTEALIGAAYIEGGMSKA---LRCISLMIPNERWRSLDESR-AVLYQVAL 1159
Query: 1588 RSVDFHA----LEDALKIKFKDRGLLVEAITHASR--PSSGVSCYQRLEFVGDAVLDHLI 1641
+ + LE+ L F + LL+EAITHAS P S S +RLEF+GD+VLD ++
Sbjct: 1160 NDIPLPSTLGPLEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVV 1219
Query: 1642 TKHLFFSYTNLPPGRLTD--LRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
LF P LR A VN E +A++ + R S + R +
Sbjct: 1220 VARLFSVKDPAPIEHYNMHLLRTAVVNGEFLGFLAMEWRTAATQR---SVVVRTGQGTAD 1276
Query: 1700 EVLEELLKPGFNSFG 1714
E LE + PG FG
Sbjct: 1277 E-LETVETPGLPLFG 1290
Score = 127 (49.8 bits), Expect = 2.6e-70, Sum P(5) = 2.6e-70
Identities = 41/143 (28%), Positives = 71/143 (49%)
Query: 1334 YVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASK----ILE 1389
Y+ +P +LC +P +LV+ +PSI + +E +A +L + K ++
Sbjct: 952 YI-IPEQLCTFDTVPATLVQLGMLVPSITQAMEPYFVAQELLRRTALGSLDFKDIDLVMM 1010
Query: 1390 ALTAASCQETFCYERAELLGDAYLKW---VVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
+T++S YER E LGDA LK V L +P EG L+ ++ ++VSN L
Sbjct: 1011 VITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFP---EGYLSLLKDRLVSNSRL 1067
Query: 1447 YQYALSKGLQSYIQADRFAPSRW 1469
+ A + GL +I +++ +W
Sbjct: 1068 CKAATALGLDQFIITRQYSLKQW 1090
Score = 93 (37.8 bits), Expect = 7.9e-49, Sum P(3) = 7.9e-49
Identities = 36/140 (25%), Positives = 66/140 (47%)
Query: 1601 IKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDL 1660
+ FKD L++ IT +S + ++ Y+R+EF+GDAVL + + P G L+ L
Sbjct: 1000 LDFKDIDLVMMVITSSS--AGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLL 1057
Query: 1661 RAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKA 1720
+ V+N + A L + +L +Q R+ + +P N+ +
Sbjct: 1058 KDRLVSNSRLCKAATALGLDQFIITRQYSL-KQWRNMLTAP-----EPPTNTRKMSS--- 1108
Query: 1721 PKVLGDIVESIAGAIFLDSG 1740
K L D+ E++ GA +++ G
Sbjct: 1109 -KTLADVTEALIGAAYIEGG 1127
Score = 72 (30.4 bits), Expect = 2.6e-70, Sum P(5) = 2.6e-70
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 1715 LGDCKAPKVLGDIVESIAGAIFLDSG---RDTSVVWQV-FQPLLDPMVTPETLPMHPVRE 1770
L + KV D++E++ GA+++DSG ++ +V LD + +HP E
Sbjct: 1333 LARLRISKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKILHPKEE 1392
Query: 1771 LQERCQQQAEGLEYKASRSGNLATVEVY 1798
L Q + YK ++ A EVY
Sbjct: 1393 LGRVAQNNK--VVYKVDKAKRAARAEVY 1418
Score = 60 (26.2 bits), Expect = 2.8e-53, Sum P(4) = 2.8e-53
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 1528 RVLSSKTLADVVEALIGVYYVEGGK-DAANHLMKWIGI 1564
R+ SK +DV+EA+IG +V+ G + L++ +GI
Sbjct: 1335 RLRISKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGI 1372
Score = 52 (23.4 bits), Expect = 9.7e-47, Sum P(4) = 9.7e-47
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 1374 LKDKINYPV-PASKILEALTAASCQ----ETFCYERAELLGDAYLKWVVSRFLF-LKYP 1426
L++ + Y S ++EA+T AS ER E LGD+ L +VV LF +K P
Sbjct: 1171 LEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSVKDP 1229
Score = 37 (18.1 bits), Expect = 3.5e-45, Sum P(4) = 3.5e-45
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTD 1659
G+LV +IT A P R +G LD + T+ GRLT+
Sbjct: 972 GMLVPSITQAMEPYFVAQELLRRTALGS--LDFKDIDLVMMVITSSSAGRLTN 1022
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 378 (138.1 bits), Expect = 4.1e-44, Sum P(3) = 4.1e-44
Identities = 96/243 (39%), Positives = 138/243 (56%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITKHLFFSYT 1650
F E + +FK++ L++A THAS + ++ CYQRLEF+GDA+LD+LITKHL+
Sbjct: 564 FENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPR 623
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGF 1710
PG LTDLR+A VNN FA +AVK+ H + + S L I DFV+ LE+ G
Sbjct: 624 QHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGM 683
Query: 1711 NSF---------GLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP- 1760
+S D + PK +GDI ES+AGAI++DSG VWQV+ P++ P++
Sbjct: 684 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKF 743
Query: 1761 -ETLPMHPVRELQERCQQQAEGLEYKASRSGNL-ATVEVYIDGVQVGVAQNPQKKMAQKL 1818
+P PVREL E + A+ + + G + TVEV G GV ++ ++A+
Sbjct: 744 SANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS--YRIAKSA 801
Query: 1819 AAR 1821
AAR
Sbjct: 802 AAR 804
Score = 190 (71.9 bits), Expect = 4.1e-44, Sum P(3) = 4.1e-44
Identities = 44/120 (36%), Positives = 65/120 (54%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
IL+ALT ++ + F ER E+LGD++LK ++ +LF YP HEG+L+ MR + VSN L
Sbjct: 195 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 254
Query: 1447 YQYALSKGLQSYIQADRFAPS-RWAAPGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLGTD 1504
Y+ KGL S + F P W PG + D+ D + ++ +A KL D
Sbjct: 255 YRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDED 314
Score = 89 (36.4 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
Identities = 43/170 (25%), Positives = 74/170 (43%)
Query: 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDED 1481
FL+Y Q+H + M M S + + +LS + A + + ++ G +P F D
Sbjct: 340 FLEYDQEHIRFIDNML--MGSGAFVKKISLSP-FSTTDSAYEWKMPKKSSLGSMP-FSSD 395
Query: 1482 TKDGDSSLFDQ------EKSVAEDK--LGTDKNYNXXXXXXXXXXXXXXXSSSYRVLSSK 1533
+D D S +D K+V ED +G + + ++ K
Sbjct: 396 FEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADK 455
Query: 1534 TLADVVEALIGVYYVEGGKDAANHLMKWIGIQV-----ESDPEEVGCPSR 1578
++AD VEAL+G Y G+ AA + +G++V +D E+ CP+R
Sbjct: 456 SIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKALCPTR 505
Score = 40 (19.1 bits), Expect = 4.1e-44, Sum P(3) = 4.1e-44
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 1020 DILQGEWILSGRDGCTGSKL 1039
++ G + L+ RD C G++L
Sbjct: 81 NLANGSYDLANRDFCQGNQL 100
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 455 (165.2 bits), Expect = 1.6e-41, P = 1.6e-41
Identities = 113/356 (31%), Positives = 191/356 (53%)
Query: 1576 PSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDA 1635
PS P+ S + S++ A+E L KF ++ LL EAITH S + Y+RLEF+GD+
Sbjct: 46 PSAPSVPVSSEMESME--AVEKILNYKFSNKSLLKEAITHTS--CTDFPSYERLEFIGDS 101
Query: 1636 VLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIR 1695
+ I+ +L+ +Y +L P L+ LRAA V+ E ARV++ H L+ LR + +LD +++
Sbjct: 102 AIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVK 161
Query: 1696 DFVKEV-LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754
+F + V E+ L S+G G KAPKVL D+ ES+AGA+++D D +W +F+ LL
Sbjct: 162 EFSEAVGKEDDLSV---SYG-GLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLL 217
Query: 1755 DPMVTPETLPMHP--VRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQK 1812
+P+VT + L P V L + C + + ++ K + GN++ +Y+D + + K
Sbjct: 218 EPIVTLDDLQKQPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENK 277
Query: 1813 KMAQKLAARNXXXXXXXXXXXXXXXXGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLY 1872
+A+ +AA+ DE+ + + T + LN+ICL++ WP P+Y
Sbjct: 278 DIARLIAAKEALRKLSEVFPVEMVI--DEDSVEIQ---LTHAKTKLNEICLKKKWPKPIY 332
Query: 1873 RCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
+ KRF + ++ T++ T G+ +KKA+ S+A ++ L K
Sbjct: 333 SVEEDRSSVQGKRFVCSAKIKITEEK-TLYMKGDEQSKIKKAESSSAYHMIRALRK 387
Score = 144 (55.7 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 44/131 (33%), Positives = 66/131 (50%)
Query: 1339 PELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKI-NYPVPASKIL-EALTAASC 1396
P IH SL A +P + +ESM + +KI NY +L EA+T SC
Sbjct: 32 PSSADIHRFYNSLSPSAPSVP-VSSEMESM----EAVEKILNYKFSNKSLLKEAITHTSC 86
Query: 1397 QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQ 1456
+ YER E +GD+ + +S +L+L YP L+ +R VS L + +L+ GL
Sbjct: 87 TDFPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLY 146
Query: 1457 SYIQADRFAPS 1467
S+++ R APS
Sbjct: 147 SFLR--RNAPS 155
Score = 48 (22.0 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1529 VLSSKTLADVVEALIGVYYVE 1549
V + K LAD+ E+L G YV+
Sbjct: 181 VKAPKVLADLFESLAGAVYVD 201
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 375 (137.1 bits), Expect = 6.8e-37, Sum P(2) = 6.8e-37
Identities = 104/271 (38%), Positives = 148/271 (54%)
Query: 1572 EVGCPS-RPACV---P--ESVLRSV--DFHALEDALKIKFKDRGLLVEAITHASRPSSGV 1623
E GC P C+ P E L + F E + FK++ L++A THAS + +
Sbjct: 117 EYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTI 176
Query: 1624 S-CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVH 1682
+ CYQRLEF+GDA+LD+LITKHL+ PG LTDLR+A VNN FA +AVK+ H +
Sbjct: 177 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 236
Query: 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSF---------GLGDCKAPKVLGDIVESIAG 1733
+ S L I DFV+ LE+ G +S D + PK +GDI ES+AG
Sbjct: 237 FKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 296
Query: 1734 AIFLDSGRDTSVVWQVFQPLLDPMVTP--ETLPMHPVRELQERCQQQAEGLEYKASRSGN 1791
AI++DSG VVWQV+ P++ P++ +P PVREL E + A+ + + G
Sbjct: 297 AIYMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 356
Query: 1792 L-ATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ TVE+ G GV ++ ++A+ AAR
Sbjct: 357 VRVTVELVGKGKFKGVGRS--YRIAKSAAAR 385
Score = 68 (29.0 bits), Expect = 6.8e-37, Sum P(2) = 6.8e-37
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 1530 LSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQV 1566
++ K++AD VEAL+G Y G+ AA + +G++V
Sbjct: 35 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 71
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 372 (136.0 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 95/234 (40%), Positives = 132/234 (56%)
Query: 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSY 1649
++ +LE L KFKD+ LL++A T AS Y+ LE +GD++L+ I Y
Sbjct: 27 MEIESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLY 86
Query: 1650 TNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPG 1709
PG LT LRA V+ E ARVAV H+L+ +LRH L+ QI +FV E +E+ P
Sbjct: 87 PKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFV-EAMEKY--P- 142
Query: 1710 FNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVR 1769
+S GL K PKVL DIVES GAIF+D T VW+V +PLL+P++ + + HP+
Sbjct: 143 LHSNGL--LKVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKSHPMT 199
Query: 1770 ELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKK-MAQKLAARN 1822
EL E CQ++ L K + N T +I+ VG +P KK A+ AA+N
Sbjct: 200 ELNEMCQKRNLKLTSKDTWEEN-QTYCFHIEDKFVGCGHHPVKKETARNFAAKN 252
>UNIPROTKB|E2RMV6 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 OMA:KCKAFAC EMBL:AAEX03007933
Ensembl:ENSCAFT00000002841 Uniprot:E2RMV6
Length = 929
Score = 262 (97.3 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
Identities = 75/233 (32%), Positives = 116/233 (49%)
Query: 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKK 351
SE + R YQL++ AK+ KNTI TG GKT +A+L+ Q +K
Sbjct: 231 SEVASTCTPLKPRNYQLELALPAKEGKNTIICAPTGCGKTFVALLICEHHLKKFP-QGQK 289
Query: 352 MLAVFLVPKVPLVYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM 408
VF ++P+ QQ V E+ GY V G ++ ++ + ++V+
Sbjct: 290 GKIVFFAIQIPVYEQQNSVFSKYFERLGYKVAGISGATSENI----SVEQIVENNDIIVL 345
Query: 409 TAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVF 464
T QIL+N LR+ I + L+I DECH+ K HPY+++M + S + P V
Sbjct: 346 TPQILVNCLRNGTIPSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDPLPQVV 405
Query: 465 GMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHVPMPSE 515
G+TAS V + + ++ IC L + LD SV+ T+KD +ELE+ V P +
Sbjct: 406 GLTAS-VGIGDAKNTMEAMEYICKLCASLDTSVIATVKDNLEELEEIVYKPQK 457
Score = 189 (71.6 bits), Expect = 3.5e-32, Sum P(2) = 3.5e-32
Identities = 65/225 (28%), Positives = 107/225 (47%)
Query: 623 YQLDVKFQESYLSKVVSLLQCELV---EGAVSKKDAKVVDSENGFVEGGTNEIEEG-ELL 678
+QL K +ES + K + L L + + + A++ D+ + + T+ G + +
Sbjct: 527 FQLPNKDEESRICKALFLYTSHLRKYNDALIINEHARMKDALDYLKDFFTDVRAAGFDEI 586
Query: 679 DSHVVSGGEH-VDVIIGAAVADGKVTPKVQSLIKILLKYQHTE-DFRAIIFVERVVAALV 736
+ H+ E + + ++ PK++ L IL + H + R I+FV+
Sbjct: 587 EQHLTYRFEEKLQELESISMDLSNENPKLKDLSFILQEEYHLNPESRTILFVKTRALVDA 646
Query: 737 LPKVFAELPSLSFVKSASLIGHN--NSQEMRTFQMQE-TIAKFR-DGRVTLLVATSVAEE 792
L K E LSF+K L G N T Q+ + FR DG +L+ATSVA+E
Sbjct: 647 LKKWIEENSELSFLKPGILTGRGKTNHNTGMTLPAQKCALDAFRTDGDKKILIATSVADE 706
Query: 793 GLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNL 837
G+DI QCN+VI ++ V+ IQ+RGR R GS L+ ++
Sbjct: 707 GIDIAQCNLVILYEYVGNVIRMIQTRGRGRARGSKCFLLTSNADV 751
>UNIPROTKB|F1MKU1 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0042993 "positive regulation of transcription
factor import into nucleus" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0039529 "RIG-I signaling
pathway" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0009597 "detection of virus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005923 "tight
junction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0015629 GO:GO:0008270 GO:GO:0003727 GO:GO:0045944
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0003690 GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0042993
GO:GO:0043330 GO:GO:0032727 GeneTree:ENSGT00510000046789
GO:GO:0032728 OMA:KCKAFAC GO:GO:0009597 GO:GO:0039529
EMBL:DAAA02021991 IPI:IPI00716102 Ensembl:ENSBTAT00000061377
Uniprot:F1MKU1
Length = 942
Score = 255 (94.8 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 72/221 (32%), Positives = 112/221 (50%)
Query: 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQL++ A+K KNTI TG GKT +++L+ + K + VF V +VPL
Sbjct: 242 RNYQLELALPAQKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGRKGKVVVFAV-QVPL 300
Query: 364 VYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
QQ V E + GY V GE + ++ + ++++T QIL+N L+
Sbjct: 301 YEQQKSVFSEYFERFGYKVSGISGETADNI----SVEQIVENNDIIILTPQILVNSLKDG 356
Query: 421 II-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVFGMTASPVNLKGV 476
I + L+I DECH+ K HPY+++M + S + P V G+TAS V +
Sbjct: 357 TIPSLSIFTLMIFDECHNTNKHHPYNMIMFHYLDQKLGGSSDSLPQVIGLTAS-VGVGDA 415
Query: 477 SSQVDCAIKICNLESKLDS-VVCTIKDR-KELEKHVPMPSE 515
+ + IC L + LD+ VV T++D +ELE+ V P +
Sbjct: 416 KNTAEATEYICKLCASLDTAVVTTVRDNLEELEEVVYKPQK 456
Score = 192 (72.6 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 70/248 (28%), Positives = 115/248 (46%)
Query: 623 YQLDVKFQESYLSKVVSLLQCELV---EGAVSKKDAKVVDSENGFVEGGTNEIEEG-ELL 678
+Q+ K +ES + K + L L + + +DA++ D+ N N G + +
Sbjct: 526 FQMPDKEEESRICKALFLYTSHLRKYNDALIINEDARMKDALNYLKNFFKNVRAAGFDAI 585
Query: 679 DSHVVSGGEHVDVII-GAAVADGKVTPKVQSLIKILLKYQHTE-DFRAIIFVERVVAALV 736
+ + E + + G ++ K++ L IL + H + R I+FV+
Sbjct: 586 EQDLTQRFEEKLLELEGISMDPSNENAKLKDLCFILQEEYHLNPETRTILFVKTRALFQA 645
Query: 737 LPKVFAELPSLSFVKSASLIGHNNS-QEM-RTFQMQE-TIAKFRDGRVT-LLVATSVAEE 792
L E P LSF+K L G + Q M T Q+ + FR R + +L+ATSVA+E
Sbjct: 646 LKNWIEENPKLSFLKPGILTGRGRTNQTMGMTLPAQKCALDAFRTNRDSKILIATSVADE 705
Query: 793 GLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEET 852
G+DI QCN+VI ++ V+ IQ+RGR R GS L+ ++ L +E
Sbjct: 706 GIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNADVIEKEKLNIC---QEK 762
Query: 853 LRKEAIER 860
+ E+I R
Sbjct: 763 MMNESISR 770
Score = 41 (19.5 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 1587 LRSVDFHALEDALKIKFKDRGLLVEAIT 1614
+R+ F A+E L +F+++ L +E I+
Sbjct: 577 VRAAGFDAIEQDLTQRFEEKLLELEGIS 604
>MGI|MGI:2442858 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0002230 "positive regulation of defense response
to virus by host" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=ISO;IDA] [GO:0003727
"single-stranded RNA binding" evidence=ISO;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005923 "tight
junction" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0009597 "detection of virus" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=ISO] [GO:0032587 "ruffle membrane"
evidence=ISO] [GO:0032727 "positive regulation of interferon-alpha
production" evidence=ISO] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISO;IMP] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=ISO] [GO:0042995
"cell projection" evidence=IEA] [GO:0043330 "response to exogenous
dsRNA" evidence=IMP] [GO:0045087 "innate immune response"
evidence=ISO;IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2442858
GO:GO:0005829 GO:GO:0005524 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0009615 GO:GO:0030334 GO:GO:0005923
EMBL:AL831793 EMBL:CH466538 GO:GO:0003690 Reactome:REACT_107772
GO:GO:0032587 GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0042993 GO:GO:0043330 GO:GO:0032727 eggNOG:COG1111
GeneTree:ENSGT00510000046789 GO:GO:0032728 CTD:23586
HOGENOM:HOG000230911 HOVERGEN:HBG052325 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 GO:GO:0009597 GO:GO:0039529 EMBL:AY553221
EMBL:AK049305 EMBL:AK078287 EMBL:AK087261 IPI:IPI00273914
IPI:IPI00458717 IPI:IPI00655015 IPI:IPI00655142 RefSeq:NP_766277.3
UniGene:Mm.86382 PDB:3TBK PDBsum:3TBK ProteinModelPortal:Q6Q899
SMR:Q6Q899 STRING:Q6Q899 PhosphoSite:Q6Q899 PaxDb:Q6Q899
PRIDE:Q6Q899 DNASU:230073 Ensembl:ENSMUST00000037907 GeneID:230073
KEGG:mmu:230073 UCSC:uc008shh.1 UCSC:uc012dbu.1 InParanoid:A2AP28
EvolutionaryTrace:Q6Q899 NextBio:379764 Bgee:Q6Q899
CleanEx:MM_DDX58 Genevestigator:Q6Q899
GermOnline:ENSMUSG00000040296 Uniprot:Q6Q899
Length = 926
Score = 258 (95.9 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 85/276 (30%), Positives = 129/276 (46%)
Query: 262 FRLGSWEADHNRAGKEANGIN------QECNG---KVGKKSEAKEKMPEEQARP--YQLD 310
F+ +AD + G EA+ I EC G SEA +P YQL+
Sbjct: 192 FKRAESKADEDD-GAEASSIQIFIQEEPECQNLSQNPGPPSEASSNNLHSPLKPRNYQLE 250
Query: 311 VLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369
+ AKK KNTI TG GKT +++L+ K + VF ++P+ QQA
Sbjct: 251 LALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKV-VFFANQIPVYEQQAT 309
Query: 370 VIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KME 425
V E+ GY + G D+ Q + ++++T QIL+N L + I +
Sbjct: 310 VFSRYFERLGYNIASISGATS----DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLS 365
Query: 426 AINLLILDECHHAVKKHPYSLVMSEFY-HTT--SKEKRPSVFGMTASPVNLKGVSSQVDC 482
L+I DECH+ K HPY+ +M + H S++ P V G+TAS V + + +
Sbjct: 366 VFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTAS-VGVGDAKTAEEA 424
Query: 483 AIKICNLESKLD-SVVCTIKDR-KELEKHVPMPSEV 516
IC L + LD SV+ T++D ELE+ V P ++
Sbjct: 425 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKI 460
Score = 187 (70.9 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 63/246 (25%), Positives = 117/246 (47%)
Query: 623 YQLDVKFQESYLSKVVSLLQCELV---EGAVSKKDAKVVDSENGFVEGGTNEIEEGELLD 679
+Q+ K +ES + K + L L + + +DA++ D+ N +++ +++ E +
Sbjct: 524 FQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALN-YLKAFFHDVREAAFDE 582
Query: 680 SH---VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE-DFRAIIFVERVVAAL 735
+ E ++ + + PK++ L +L + H + + + I+FV+
Sbjct: 583 TERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 642
Query: 736 VLPKVFAELPSLSFVKSASLIGHNNSQEMR--TFQMQETIAK-FR-DGRVTLLVATSVAE 791
L K E P+LSF+K L G + T Q+ + + FR G +L+ATSVA+
Sbjct: 643 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVAD 702
Query: 792 EGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNL---SHATFLRNARN 848
EG+DI +CN+VI ++ V+ IQ+RGR R S L+ ++ A ++
Sbjct: 703 EGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKANMIKEKIM 762
Query: 849 SEETLR 854
+E LR
Sbjct: 763 NESILR 768
>DICTYBASE|DDB_G0294407 [details] [associations]
symbol:helF "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0040029 "regulation of gene
expression, epigenetic" evidence=IMP] [GO:0031149 "sorocarp stalk
cell differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
InterPro:IPR014720 dictyBase:DDB_G0294407 GO:GO:0005524
GO:GO:0005634 Gene3D:3.30.160.20 GenomeReviews:CM000151_GR
EMBL:AAFI02000008 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0040029 GO:GO:0008026 GO:GO:0003724
GO:GO:0031149 eggNOG:COG1111 RefSeq:XP_001134628.1
ProteinModelPortal:Q86L44 EnsemblProtists:DDB0233379 GeneID:8618629
KEGG:ddi:DDB_G0294407 OMA:ANIQSRG ProtClustDB:CLSZ2733552
Uniprot:Q86L44
Length = 837
Score = 242 (90.2 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 67/233 (28%), Positives = 120/233 (51%)
Query: 287 GKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQ 346
G GK E + P R YQ ++ ++ +K+ I L TG GKTLI+ L+I+ ++
Sbjct: 219 GDDGKPMEMNKSKP----RDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKK----MK 270
Query: 347 RQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVL 406
+ N VF+V ++PLV QQ++VI +TG V G+ F Q QR FD VL
Sbjct: 271 QLNPSKQIVFIVDRIPLVIQQSDVIETETGLKV---LSAHGETFKPVQLKQR-FD---VL 323
Query: 407 VMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGM 466
V+ + +L + + + + L+++DE HH VK+H ++ ++ + +T + P + G+
Sbjct: 324 VVIGDLFNKLLSNGDLNILSFCLIVIDEAHHIVKEHSFAKLLRDKLNTIPEICHPKILGL 383
Query: 467 TASPVNLKG-----VSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514
TASP K +S ++ + C + + + ++K + K +P+P+
Sbjct: 384 TASPAGKKDFFNTLLSLKLISKVSRCEIIKPTNQSIIPYINQKNI-KIIPIPT 435
Score = 202 (76.2 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 74/249 (29%), Positives = 127/249 (51%)
Query: 617 NDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676
N N+ L+ KF S+ K+ + ++ A+ ++ ++ +E +N I++ E
Sbjct: 489 NSSTQNHNLN-KFLSSFFEKINDFINFKMFGSAIPVG----LNLKSFLIEEISN-IDDVE 542
Query: 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVE-RVVAAL 735
L S +++ H + +AD K++ ++IL + + ++D +AIIFV+ R VA
Sbjct: 543 L-QSEILAM-VH-SLPCDEEIADS--ISKLEIALQILDE-KKSDDLKAIIFVKTRDVAK- 595
Query: 736 VLPKVFAELPSL------SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSV 789
KV++ L L SF+K ++GH + M ++ I +FR + ++VATSV
Sbjct: 596 ---KVYSLLDQLRMGDRFSFIKPNLVVGHGSIGGMSISSQKKAIEEFRSDQCNVIVATSV 652
Query: 790 AEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNS 849
EEG D+ +CN+VIR D TV A IQSRGR R S + +++ + +N
Sbjct: 653 VEEGFDVPECNIVIRLDPPTTVTANIQSRGRLRNRDSYFYGIVKVDDPREDNIYEFFKNQ 712
Query: 850 EETLRKEAI 858
E L +EAI
Sbjct: 713 ERYL-EEAI 720
>UNIPROTKB|D4A8D9 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR007087
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00952196
Ensembl:ENSRNOT00000065299 ArrayExpress:D4A8D9 Uniprot:D4A8D9
Length = 704
Score = 266 (98.7 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 80/255 (31%), Positives = 124/255 (48%)
Query: 283 QECNGKVGKKSEAKEKMPEEQARP--YQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIR 339
Q + G SEA +P YQL++ AKK KNT+ TG GKT +++L+
Sbjct: 176 QNLSQNPGPPSEASPNNSHSPLKPRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICE 235
Query: 340 SICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRW 396
+ K + VF ++P+ QQA V E+ GY V G D
Sbjct: 236 HHLKNFPHGQKGKV-VFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA----DNVSV 290
Query: 397 QREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFY-HT 454
Q + ++++T QIL+N L + I + L+I DECH+ K HPY+ +M + H
Sbjct: 291 QHIIENNDIVILTPQILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHK 350
Query: 455 T--SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHV 510
S + P V G+TAS V + G + + + IC L + LD SV+ T++D +ELE+ V
Sbjct: 351 LGGSPDPLPQVIGLTAS-VGV-GDAKTEEAMLHICKLCAALDASVIATVRDNVEELEQXV 408
Query: 511 PMPSEVVVEYDKAAS 525
P ++ + + AS
Sbjct: 409 YKPQKISRKVESRAS 423
Score = 174 (66.3 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 58/214 (27%), Positives = 103/214 (48%)
Query: 628 KFQESYLSKVVSLLQCELV---EGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSH--- 681
K +ES + K + L L + + +DA++ D+ N +++ +++ E ++
Sbjct: 482 KDEESRICKALFLYTSHLRKYNDALIISEDAQMKDALN-YLKAFFHDVREAAFDETEQDL 540
Query: 682 VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVF 741
E V+ + + K++ L IL +Y + + I+FV+ L K
Sbjct: 541 TRRFEEKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKKWI 600
Query: 742 AELPSLSFVKSASLIGHNNSQEMR--TFQMQETIAK-FR-DGRVTLLVATSVAEEGLDIR 797
E P+LSF+K L G + + T Q+ + + FR + +L+ATSVA+E +DI
Sbjct: 601 EENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADERIDIA 660
Query: 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM 831
QCN+VI ++ V+ IQ+RGR R S L+
Sbjct: 661 QCNLVILYEYVGNVINMIQTRGRGRARDSKCFLL 694
Score = 40 (19.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 24/121 (19%), Positives = 53/121 (43%)
Query: 531 EQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590
E+++++E E + + +R+ + ++ ++ K E + + V R D I++
Sbjct: 546 EKVEELENVSREPS-NENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKKWIEENP 604
Query: 591 AINYAL-GEL-GQWCAYKVAQSFLTALQ---NDERANYQLDVKFQESYLSKVVSLLQCEL 645
A+++ G L G+ + L A + RAN ++ S + + + QC L
Sbjct: 605 ALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADERIDIAQCNL 664
Query: 646 V 646
V
Sbjct: 665 V 665
>RGD|1309460 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007087 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00780835
Ensembl:ENSRNOT00000060764 UCSC:RGD:1309460 ArrayExpress:D4ADT6
Uniprot:D4ADT6
Length = 922
Score = 266 (98.7 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 80/255 (31%), Positives = 124/255 (48%)
Query: 283 QECNGKVGKKSEAKEKMPEEQARP--YQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIR 339
Q + G SEA +P YQL++ AKK KNT+ TG GKT +++L+
Sbjct: 220 QNLSQNPGPPSEASPNNSHSPLKPRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICE 279
Query: 340 SICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRW 396
+ K + VF ++P+ QQA V E+ GY V G D
Sbjct: 280 HHLKNFPHGQKGKV-VFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA----DNVSV 334
Query: 397 QREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFY-HT 454
Q + ++++T QIL+N L + I + L+I DECH+ K HPY+ +M + H
Sbjct: 335 QHIIENNDIVILTPQILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHK 394
Query: 455 T--SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHV 510
S + P V G+TAS V + G + + + IC L + LD SV+ T++D +ELE+ V
Sbjct: 395 LGGSPDPLPQVIGLTAS-VGV-GDAKTEEAMLHICKLCAALDASVIATVRDNVEELEQXV 452
Query: 511 PMPSEVVVEYDKAAS 525
P ++ + + AS
Sbjct: 453 YKPQKISRKVESRAS 467
Score = 176 (67.0 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 63/243 (25%), Positives = 113/243 (46%)
Query: 628 KFQESYLSKVVSLLQCELV---EGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSH--- 681
K +ES + K + L L + + +DA++ D+ N +++ +++ E ++
Sbjct: 526 KDEESRICKALFLYTSHLRKYNDALIISEDAQMKDALN-YLKAFFHDVREAAFDETEQDL 584
Query: 682 VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVF 741
E V+ + + K++ L IL +Y + + I+FV+ L K
Sbjct: 585 TRRFEEKVEELENVSREPSNENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKKWI 644
Query: 742 AELPSLSFVKSASLIGHNNSQEMR--TFQMQETIAK-FR-DGRVTLLVATSVAEEGLDIR 797
E P+LSF+K L G + + T Q+ + + FR + +L+ATSVA+E +DI
Sbjct: 645 EENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADERIDIA 704
Query: 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEA 857
QCN+VI ++ V+ IQ+RGR R S L+ ++ A +E + E+
Sbjct: 705 QCNLVILYEYVGNVINMIQTRGRGRARDSKCFLLTSSADVIEK---EKANMVKEKIMNES 761
Query: 858 IER 860
I R
Sbjct: 762 ILR 764
Score = 40 (19.1 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 24/121 (19%), Positives = 53/121 (43%)
Query: 531 EQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590
E+++++E E + + +R+ + ++ ++ K E + + V R D I++
Sbjct: 590 EKVEELENVSREPS-NENRKLRDLYLILQEYHLKPETKTILFVKTRALVDALKKWIEENP 648
Query: 591 AINYAL-GEL-GQWCAYKVAQSFLTALQ---NDERANYQLDVKFQESYLSKVVSLLQCEL 645
A+++ G L G+ + L A + RAN ++ S + + + QC L
Sbjct: 649 ALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRANADNNILIATSVADERIDIAQCNL 708
Query: 646 V 646
V
Sbjct: 709 V 709
>UNIPROTKB|K7GMB7 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:CU856598
Ensembl:ENSSSCT00000033560 Uniprot:K7GMB7
Length = 588
Score = 232 (86.7 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 70/172 (40%), Positives = 97/172 (56%)
Query: 698 ADGKVTPKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV--KSAS 754
ADG PK++ L +IL K ++ + R IIF +A L + PSL V ++
Sbjct: 343 ADGPENPKLEVLKEILQKQFKGPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQL 402
Query: 755 LIGH-NNSQEMRTFQM-----QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA 808
LIG N+SQ QM QE I KFR G + LLVATSVAEEGLDI QCNVV+R+ L
Sbjct: 403 LIGAGNSSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 809 KTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSE--ETLRKEAI 858
++ +Q+RGRAR S Y + +G+ LR + +E E+L ++A+
Sbjct: 463 TNEISMVQARGRARASQSVYSFVAAQGSRE----LRREQTNEALESLMEQAV 510
Score = 204 (76.9 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 90/319 (28%), Positives = 151/319 (47%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + +N I +L TGAGKT A + + L+ + + V LV +V
Sbjct: 2 ELRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL-- 417
LV Q E + + G+MG R D +L+ TA++L L
Sbjct: 58 HLVTQHCEEFSRMLDRRWAITTLSGDMGPRAGFGHL-ARSHD---LLICTAELLQKALTS 113
Query: 418 --RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY-HTTSKEKR-PSVFGMTASPVNL 473
+++ +LL++DECHH K Y++++S++ H + K P V G+TASP
Sbjct: 114 EEEEEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGT- 172
Query: 474 KGVSSQVDCAIK-ICNLESKLDS--VVCTIKDRKELEKHVPMP-SEVVVEYDKA-----A 524
G +S +D AI I L + LD+ ++ R +L++H P + + + +A A
Sbjct: 173 -GRASTLDGAIDHILQLCANLDTWRIMSPQNSRSQLQEHSRQPCKQYDLCHQRAQDPFGA 231
Query: 525 SLWSL----HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD 580
L L H L+ E+ + Q+ ++ A +AG +E R+VY + R +D
Sbjct: 232 KLKKLMDKIHRHLEMPELRRDFGTQTYEQQVVELSQAAAEAGLQE--RRVYALHLRRYND 289
Query: 581 GAANLIQKLRAINYALGEL 599
A + +RA++ AL L
Sbjct: 290 -ALLIHDTVRAVD-ALATL 306
Score = 46 (21.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA 813
S + S+E+R Q E + + V + A AE I++ R L K
Sbjct: 483 SFVAAQGSRELRREQTNEALESLMEQAVAAVQAMDQAEYQAKIQELQ---RAALVKRAAR 539
Query: 814 YIQSRGRARK 823
Q + R +K
Sbjct: 540 AAQQKSRQQK 549
>UNIPROTKB|F1S0P6 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0045824 "negative regulation
of innate immune response" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0039534
"negative regulation of MDA-5 signaling pathway" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 OMA:ELRPYQW GO:GO:0032481 EMBL:CU856598
Ensembl:ENSSSCT00000018960 Ensembl:ENSSSCT00000035155
Uniprot:F1S0P6
Length = 681
Score = 232 (86.7 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
Identities = 70/172 (40%), Positives = 97/172 (56%)
Query: 698 ADGKVTPKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV--KSAS 754
ADG PK++ L +IL K ++ + R IIF +A L + PSL V ++
Sbjct: 343 ADGPENPKLEVLKEILQKQFKGPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQL 402
Query: 755 LIGH-NNSQEMRTFQM-----QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA 808
LIG N+SQ QM QE I KFR G + LLVATSVAEEGLDI QCNVV+R+ L
Sbjct: 403 LIGAGNSSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLL 462
Query: 809 KTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSE--ETLRKEAI 858
++ +Q+RGRAR S Y + +G+ LR + +E E+L ++A+
Sbjct: 463 TNEISMVQARGRARASQSVYSFVAAQGSRE----LRREQTNEALESLMEQAV 510
Score = 204 (76.9 bits), Expect = 5.7e-31, Sum P(2) = 5.7e-31
Identities = 90/319 (28%), Positives = 151/319 (47%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + +N I +L TGAGKT A + + L+ + + V LV +V
Sbjct: 2 ELRPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL-- 417
LV Q E + + G+MG R D +L+ TA++L L
Sbjct: 58 HLVTQHCEEFSRMLDRRWAITTLSGDMGPRAGFGHL-ARSHD---LLICTAELLQKALTS 113
Query: 418 --RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY-HTTSKEKR-PSVFGMTASPVNL 473
+++ +LL++DECHH K Y++++S++ H + K P V G+TASP
Sbjct: 114 EEEEEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRTKPLPQVLGLTASPGT- 172
Query: 474 KGVSSQVDCAIK-ICNLESKLDS--VVCTIKDRKELEKHVPMP-SEVVVEYDKA-----A 524
G +S +D AI I L + LD+ ++ R +L++H P + + + +A A
Sbjct: 173 -GRASTLDGAIDHILQLCANLDTWRIMSPQNSRSQLQEHSRQPCKQYDLCHQRAQDPFGA 231
Query: 525 SLWSL----HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD 580
L L H L+ E+ + Q+ ++ A +AG +E R+VY + R +D
Sbjct: 232 KLKKLMDKIHRHLEMPELRRDFGTQTYEQQVVELSQAAAEAGLQE--RRVYALHLRRYND 289
Query: 581 GAANLIQKLRAINYALGEL 599
A + +RA++ AL L
Sbjct: 290 -ALLIHDTVRAVD-ALATL 306
Score = 46 (21.3 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 17/70 (24%), Positives = 27/70 (38%)
Query: 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA 813
S + S+E+R Q E + + V + A AE I++ R L K
Sbjct: 483 SFVAAQGSRELRREQTNEALESLMEQAVAAVQAMDQAEYQAKIQELQ---RAALVKRAAR 539
Query: 814 YIQSRGRARK 823
Q + R +K
Sbjct: 540 AAQQKSRQQK 549
>MGI|MGI:1931560 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO;IDA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=ISO;IMP]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IMP] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=ISO] [GO:0039536 "negative regulation of RIG-I
signaling pathway" evidence=ISO;IMP] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=ISO;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IMP] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IMP] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1931560 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 eggNOG:COG1111 GeneTree:ENSGT00510000046789
GO:GO:1900245 GO:GO:1900246 CTD:79132 HOGENOM:HOG000230992
HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15
GO:GO:0032481 EMBL:AF316999 EMBL:AF317000 EMBL:AL591469
EMBL:BC029209 IPI:IPI00319899 RefSeq:NP_084426.2 UniGene:Mm.271830
ProteinModelPortal:Q99J87 SMR:Q99J87 STRING:Q99J87
PhosphoSite:Q99J87 PaxDb:Q99J87 PRIDE:Q99J87
Ensembl:ENSMUST00000017974 GeneID:80861 KEGG:mmu:80861
InParanoid:A2A5E9 NextBio:350167 Bgee:Q99J87 CleanEx:MM_DHX58
Genevestigator:Q99J87 GermOnline:ENSMUSG00000017830 Uniprot:Q99J87
Length = 678
Score = 237 (88.5 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 69/178 (38%), Positives = 94/178 (52%)
Query: 687 EHVDVIIGAAVADGKVTPKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELP 745
+H +V+ G A G PK++ L +ILLK + R IIF A L + P
Sbjct: 333 DHKNVL-GQLAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTASSLLLWLRQQP 391
Query: 746 SLSFV--KSASLIGHNNSQE---MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800
L V K LIG N+ + M QE I +FRDG ++LLVATSVAEEGLDI QCN
Sbjct: 392 CLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQCN 451
Query: 801 VVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAI 858
VV+R+ L ++ +Q+RGRAR S Y + G+ L N + E L ++A+
Sbjct: 452 VVVRYGLLTNEISMVQARGRARAGQSVYSFLATEGSREMKRELTN--EALEVLMEKAV 507
Score = 192 (72.6 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 85/302 (28%), Positives = 136/302 (45%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + KN I +L TGAGKT A + + + R V LV +V
Sbjct: 2 ELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGK----VVVLVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
LV Q AE R + V G+MG R D +L+ TA++L L
Sbjct: 58 HLVSQHAEEFRRMLDKHWTVTTLSGDMGSRAGFGLM-ARSHD---LLICTAELLQLALNS 113
Query: 420 SI----IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK--EKRPSVFGMTASPVNL 473
S +++ +L+++DECHH K Y+ ++S + K E P V G+TASP
Sbjct: 114 SEEDEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEPLPQVLGLTASPGT- 172
Query: 474 KGVSSQVDCAIK-ICNLESKLDSVVCTIKDRK----ELEKHVPMPSEVVVEYDKAAS--- 525
G ++++ AI I L + LD+ C I K +L H P P + + A
Sbjct: 173 -GGATKLQGAIDHILQLCANLDT--CHIMSPKNCYSQLLMHNPKPCKQYDLCQRRAQDPF 229
Query: 526 -------LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTE 578
+ +H+QL+ ++ + Q ++ A +AG +E+ +VY + R
Sbjct: 230 GDLIKKLMNQIHQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQ--RVYALHLRRY 287
Query: 579 SD 580
+D
Sbjct: 288 ND 289
Score = 41 (19.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 610 SFLTALQNDERANYQLDVKFQESYLSKVVSLLQ-CELVEGAVSKKDAKVVDSENGFVEGG 668
SFL A + +L + E + K V+ +Q + E +D +
Sbjct: 480 SFL-ATEGSREMKRELTNEALEVLMEKAVAAVQKMDPDEFKAKIRDLQQASLVKRAARAA 538
Query: 669 TNEIEEGELLDSHV 682
EI++G+ L HV
Sbjct: 539 HREIQQGQFLPEHV 552
>RGD|1310093 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0032480
"negative regulation of type I interferon production"
evidence=IEA;ISO] [GO:0032481 "positive regulation of type I
interferon production" evidence=IEA;ISO] [GO:0039534 "negative
regulation of MDA-5 signaling pathway" evidence=IEA;ISO]
[GO:0039536 "negative regulation of RIG-I signaling pathway"
evidence=IEA;ISO] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA;ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA;ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1310093 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0032480 GO:GO:0039534 GO:GO:0039536 GO:GO:0045824
GeneTree:ENSGT00510000046789 GO:GO:1900245 GO:GO:1900246 CTD:79132
KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15 GO:GO:0032481
IPI:IPI00371058 RefSeq:NP_001092258.1 UniGene:Rn.105654
Ensembl:ENSRNOT00000024718 GeneID:303538 KEGG:rno:303538
UCSC:RGD:1310093 NextBio:651548 Uniprot:D3ZD46
Length = 678
Score = 233 (87.1 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 68/167 (40%), Positives = 87/167 (52%)
Query: 698 ADGKVTPKVQSLIKILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFV--KSAS 754
A G PK++ L ILLK + D R IIF A L + P L V K
Sbjct: 343 AQGPENPKLEMLEGILLKQFGSPDHTRGIIFTRTRQTASSLLLWLRQQPCLQTVNIKPQM 402
Query: 755 LIGHNN---SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
LIG N S M QE I +FRDG++ LLVATSVAEEGLDI QCNVV+R+ L
Sbjct: 403 LIGAGNTGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVRYGLLTNE 462
Query: 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAI 858
++ +Q+RGRAR S Y + G+ L N + E L ++A+
Sbjct: 463 ISMVQARGRARAGQSVYSFVATEGSREIKRELTN--EALEVLMEQAV 507
Score = 195 (73.7 bits), Expect = 3.8e-30, Sum P(2) = 3.8e-30
Identities = 95/343 (27%), Positives = 159/343 (46%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + KN I +L TGAGKT A + + + R V LV +V
Sbjct: 2 ELRPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRHLETVDRGK----VVVLVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
LV Q AE R + V G+MG R D +L+ TA++L L+
Sbjct: 58 HLVNQHAEEFRRMLDKQWTVTTLSGDMGSRAGFGLL-ARSHD---LLICTAELLHLALKS 113
Query: 420 SI----IKMEAINLLILDECHHAVKKHPYSLVMSEFY-HTTSKEKR-PSVFGMTASPVNL 473
S +++ +L+++DECHH K Y+ ++S + H K K P V G+TASP
Sbjct: 114 SEEDEHVELTEFSLIVVDECHHTHKDTIYNTILSRYLEHKLKKAKPLPQVLGLTASPGT- 172
Query: 474 KGVSSQVDCAIK-ICNLESKLDSV-VCTIKD-RKELEKHVPMPSEVVVEYDKAAS----- 525
G ++++ AI I L + LD+ + + K+ +L +H P P + +YD
Sbjct: 173 -GGATKLQGAIDHILQLCANLDTWRIMSPKNCYSQLLEHNPKPCK---QYDLCQRRTQDP 228
Query: 526 --------LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERT 577
+ +H+QL+ ++ + Q ++ A +AG +E+ +VY + R
Sbjct: 229 FGDLLKKLMKQIHQQLEMPDLKQQFGTQMYEQQVVQLSKDAAEAGLQEQ--RVYALHLRR 286
Query: 578 ESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDER 620
+D A + +RA + AL L + Y ++ T + + ER
Sbjct: 287 YND-ALYIHDTVRAWD-ALNMLQDF--YDTERALKTQMVHAER 325
Score = 42 (19.8 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 726 IFVERVVAAL--VLPKVF-AELPSL---SFVKSASLIGHNNSQE 763
+ +E+ VAA+ + P+ F A++ L S VK A+ H SQ+
Sbjct: 501 VLMEQAVAAVQKMDPEEFKAKIQDLQLASLVKRAARAAHRESQQ 544
>UNIPROTKB|E1BJZ0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0042981 "regulation
of apoptotic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0042981
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0045087
GO:GO:0009615 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016925 GeneTree:ENSGT00510000046789
CTD:64135 KO:K12647 OMA:KCGQAWG EMBL:DAAA02004416 IPI:IPI00702873
RefSeq:XP_002685384.1 RefSeq:XP_615590.2 UniGene:Bt.24098
Ensembl:ENSBTAT00000010703 GeneID:535490 KEGG:bta:535490
NextBio:20876765 Uniprot:E1BJZ0
Length = 1021
Score = 235 (87.8 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 59/155 (38%), Positives = 88/155 (56%)
Query: 712 ILLKYQHTE-DFRAIIFVERVVAALVLPKVFAELPSLSFV--KSASLIGHNNSQEMRTF- 767
I+ +Y TE R IIF + +A L + E S V K+ LIG +S E +
Sbjct: 703 IMEQYSRTEGSARGIIFTKTRQSAYALSQWIIENEKFSEVGVKAHHLIGAGHSSEFKPMT 762
Query: 768 --QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+ +E I+KFR G++ LL+AT+VAEEGLDI++CN+VIR+ L +A +Q+RGRAR
Sbjct: 763 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 822
Query: 826 SDYILMIERGNLSHATFLRNARNSEETLRKEAIER 860
S Y+L+ + G S + E + +AI+R
Sbjct: 823 STYVLVAQSG--SGVVERETVNDFREKMMYKAIDR 855
Score = 197 (74.4 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 78/278 (28%), Positives = 128/278 (46%)
Query: 251 ERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLD 310
E D + G V L ++ G ++ + + + + + + E PE RPYQL+
Sbjct: 256 ESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDDENVAQRASPE--PELNLRPYQLE 313
Query: 311 VLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369
V + A + KN I L TG+GKT +AV + + D ++ ++ + LV KVPLV Q
Sbjct: 314 VAQPALEGKNIIICLPTGSGKTRVAVYIAKDHL-DKKKASEHGKVMVLVNKVPLVEQLFR 372
Query: 370 VIREQTGYVVGHY-CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI------I 422
+E ++ Y + D + + V++ TAQIL N L +S I
Sbjct: 373 --KEFKPFLKKWYHVTRLSGDTQLKITFPEVVKSHDVIISTAQILENSLLNSEEGEDDGI 430
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFY------HTTSKEKRP-----SVFGMTASPV 471
++ +L+I+DECHH K+ Y+ +M F + KE +P + G+TASP
Sbjct: 431 ELSDFSLIIIDECHHTNKEAVYNNIMRRFLKQKLKNNKLKKENKPVIPLPQIVGLTASP- 489
Query: 472 NLKGVSSQVDCAIKICNLESKLDSV-VCTIKDRKELEK 508
+ G Q I + + LD+V + T+K L K
Sbjct: 490 GVGGAKKQAKAEEHILKICANLDAVTIKTVKQNINLLK 527
Score = 44 (20.5 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 622 NYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGT 669
N L+ F +S +VS L EG+VS D + + N + GT
Sbjct: 241 NSSLESSFADS---SIVSESDTSLAEGSVSCLDESLGHNSNMGSDSGT 285
Score = 41 (19.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 1665 VNNENFARVAVK-HKLHVHLRHGSSALDRQIRDFVKEVLEE 1704
+ NE F+ V VK H L + H SS ++ KEV+ +
Sbjct: 734 IENEKFSEVGVKAHHL-IGAGH-SSEFKPMTQNEQKEVISK 772
>UNIPROTKB|E2RNK0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045087 "innate immune response"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001315 InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619 Pfam:PF04851
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0042981 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043021 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016925 GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647
OMA:KCGQAWG EMBL:AAEX03017717 RefSeq:XP_545493.2
Ensembl:ENSCAFT00000016597 GeneID:488371 KEGG:cfa:488371
Uniprot:E2RNK0
Length = 1029
Score = 221 (82.9 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 51/126 (40%), Positives = 78/126 (61%)
Query: 712 ILLKYQHTED-FRAIIFVERVVAALVLPKVFAELPSLSFV--KSASLIGHNNSQEMRTF- 767
I+ ++ TE+ R IIF + +A L + E + V K+ LIG +S E +
Sbjct: 711 IMEQFTRTEEPARGIIFTKTRQSAFALSQWITENKKFAEVGVKAHHLIGAGHSSEFKPMT 770
Query: 768 --QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+ +E I+KFR G++ LL+AT+VAEEGLDI++CN+VIR+ L +A +Q+RGRAR
Sbjct: 771 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 830
Query: 826 SDYILM 831
S Y+L+
Sbjct: 831 STYVLV 836
Score = 206 (77.6 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 76/276 (27%), Positives = 126/276 (45%)
Query: 251 ERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLD 310
E D + G V L ++ G ++ + + + + +E PE RPYQ++
Sbjct: 258 ESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEE--NVAERASPEPELHLRPYQME 315
Query: 311 VLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369
V + A + KN I L TG+GKT +AV + + + ++ ++ + LV KVPLV Q
Sbjct: 316 VAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVPLVEQ--- 372
Query: 370 VIREQTGYVVGHYCGEMGQDFWDAQ---RWQREFDTKQVLVMTAQILLNILRHSI----- 421
+ RE+ + + +G D Q + T V++ TAQIL N L +S
Sbjct: 373 LFREEFEPFLKKWYHTIGLS-GDTQLKISFPEIVKTYDVIISTAQILENSLLNSEKGEDD 431
Query: 422 -IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR-----------PSVFGMTAS 469
++ L+I+DECHH K+ Y+ +M + K + P + G+TAS
Sbjct: 432 GVQFSDFTLIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKEYKPVIPLPQILGLTAS 491
Query: 470 PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKE 505
P ++G Q + I + + LD+ CTI KE
Sbjct: 492 P-GVRGAKRQAEAQQHILKICANLDA--CTIITVKE 524
Score = 50 (22.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 606 KVAQSFLTALQNDERANYQLDVKFQESYL--SKVVSLLQCELVEGAVSKKDAKVVDSENG 663
K A + + E+ + ++ ES L S VVS L EG+VS D + + N
Sbjct: 222 KAAALLAMSQPSPEKEGWDMENNSLESSLLDSSVVSESDTSLAEGSVSCLDESLGHNSNM 281
Query: 664 FVEGGT 669
+ GT
Sbjct: 282 GSDSGT 287
>UNIPROTKB|D4AC08 [details] [associations]
symbol:Ifih1 "Protein Ifih1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1560496 GO:GO:0005524 GO:GO:0042981 GO:GO:0003677
GO:GO:0005622 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00568713
Ensembl:ENSRNOT00000040263 ArrayExpress:D4AC08 Uniprot:D4AC08
Length = 978
Score = 221 (82.9 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 62/169 (36%), Positives = 94/169 (55%)
Query: 704 PKVQS--LIK----ILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFV--KSAS 754
PK ++ LIK IL ++ +E+ R IIF + + L + E + V K+
Sbjct: 647 PKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHH 706
Query: 755 LIGHNNSQEMRTF---QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
LIG +S E++ + +E I+KFR G + LL+AT+VAEEGLDI++CN+VIR+ L
Sbjct: 707 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 766
Query: 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIER 860
+A +Q+RGRAR S Y+L+ G S T + E + +AI R
Sbjct: 767 IAMVQARGRARADESTYVLVTSSG--SGVTEREIVNDFREKMMYKAINR 813
Score = 194 (73.4 bits), Expect = 3.1e-28, Sum P(2) = 3.1e-28
Identities = 75/301 (24%), Positives = 137/301 (45%)
Query: 271 HN-RAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGA 328
HN G+++ + + + ++ PE Q RPYQ++V + A KN I L TG+
Sbjct: 227 HNSNMGRDSGTMGSDSDEDTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGS 286
Query: 329 GKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQ 388
GKT +AV + + + ++ + + LV KV L Q + R++ + + +G
Sbjct: 287 GKTRVAVYITKDHLDKKKQACESGKVIVLVNKVMLAEQ---LFRKEFNPFLKKWYRIIGL 343
Query: 389 DFWDAQ---RWQREFDTKQVLVMTAQILLNILRH------SIIKMEAINLLILDECHHAV 439
D Q + + V++ TAQIL N L + +++ +L+I+DECHH
Sbjct: 344 S-GDTQLKISFPEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTN 402
Query: 440 KKHPYSLVMSEFY------HTTSKEKRPSV-----FGMTASPVNLKGVSSQVDCAIKICN 488
K+ Y+ +M + H K+ +P++ G+TASP + Q + I N
Sbjct: 403 KEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLPQILGLTASP-GVGAAKKQSEAEKHILN 461
Query: 489 LESKLDS-VVCTIKDRKELEKH-VPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQS 546
+ + LD+ + T+K+ KH + P + V D E+L ++ +++ Q
Sbjct: 462 ICANLDAFTIKTVKENLSQLKHQIKEPCKKFVIADDTREN-PFKEKLLEIMASIQTYCQK 520
Query: 547 S 547
S
Sbjct: 521 S 521
Score = 41 (19.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 1665 VNNENFARVAVK-HKLHVHLRHGSSALDRQIRDFVKEVLEE 1704
+ NE FA V VK H L + H SS + + KEV+ +
Sbjct: 692 MENEKFAEVGVKAHHL-IGAGH-SSEVKPMTQTEQKEVISK 730
>RGD|1560496 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0016925
"protein sumoylation" evidence=IEA;ISO] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045087 "innate immune response"
evidence=IEA;ISO] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 RGD:1560496
GO:GO:0005524 GO:GO:0042981 GO:GO:0003677 GO:GO:0005622
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH473949
GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647 OMA:KCGQAWG
RefSeq:NP_001102669.1 UniGene:Rn.151974 Ensembl:ENSRNOT00000009620
GeneID:499801 KEGG:rno:499801 NextBio:704049 Uniprot:G3V6W5
Length = 1027
Score = 221 (82.9 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 62/169 (36%), Positives = 94/169 (55%)
Query: 704 PKVQS--LIK----ILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFV--KSAS 754
PK ++ LIK IL ++ +E+ R IIF + + L + E + V K+
Sbjct: 696 PKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHH 755
Query: 755 LIGHNNSQEMRTF---QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
LIG +S E++ + +E I+KFR G + LL+AT+VAEEGLDI++CN+VIR+ L
Sbjct: 756 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 815
Query: 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIER 860
+A +Q+RGRAR S Y+L+ G S T + E + +AI R
Sbjct: 816 IAMVQARGRARADESTYVLVTSSG--SGVTEREIVNDFREKMMYKAINR 862
Score = 194 (73.4 bits), Expect = 3.6e-28, Sum P(2) = 3.6e-28
Identities = 75/301 (24%), Positives = 137/301 (45%)
Query: 271 HN-RAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGA 328
HN G+++ + + + ++ PE Q RPYQ++V + A KN I L TG+
Sbjct: 276 HNSNMGRDSGTMGSDSDEDTIMGTKRASPKPELQLRPYQMEVAQPALDGKNIIICLPTGS 335
Query: 329 GKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQ 388
GKT +AV + + + ++ + + LV KV L Q + R++ + + +G
Sbjct: 336 GKTRVAVYITKDHLDKKKQACESGKVIVLVNKVMLAEQ---LFRKEFNPFLKKWYRIIGL 392
Query: 389 DFWDAQ---RWQREFDTKQVLVMTAQILLNILRH------SIIKMEAINLLILDECHHAV 439
D Q + + V++ TAQIL N L + +++ +L+I+DECHH
Sbjct: 393 S-GDTQLKISFPEVVKSYDVIISTAQILENSLLNLESGEDDGVQLSDFSLIIIDECHHTN 451
Query: 440 KKHPYSLVMSEFY------HTTSKEKRPSV-----FGMTASPVNLKGVSSQVDCAIKICN 488
K+ Y+ +M + H K+ +P++ G+TASP + Q + I N
Sbjct: 452 KEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLPQILGLTASP-GVGAAKKQSEAEKHILN 510
Query: 489 LESKLDS-VVCTIKDRKELEKH-VPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQS 546
+ + LD+ + T+K+ KH + P + V D E+L ++ +++ Q
Sbjct: 511 ICANLDAFTIKTVKENLSQLKHQIKEPCKKFVIADDTREN-PFKEKLLEIMASIQTYCQK 569
Query: 547 S 547
S
Sbjct: 570 S 570
Score = 41 (19.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 1665 VNNENFARVAVK-HKLHVHLRHGSSALDRQIRDFVKEVLEE 1704
+ NE FA V VK H L + H SS + + KEV+ +
Sbjct: 741 MENEKFAEVGVKAHHL-IGAGH-SSEVKPMTQTEQKEVISK 779
>MGI|MGI:1918836 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=ISO] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISO] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045087
"innate immune response" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194
SMART:SM00490 MGI:MGI:1918836 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0042981 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925 GO:GO:0032727
eggNOG:COG1111 GeneTree:ENSGT00510000046789 GO:GO:0032728
HOVERGEN:HBG106019 CTD:64135 KO:K12647 OMA:KCGQAWG
OrthoDB:EOG48KR9P EMBL:AY075132 EMBL:AF374384 EMBL:AK018602
EMBL:AK037057 EMBL:AK040519 EMBL:AK153018 EMBL:AL929246
EMBL:BC004031 EMBL:BC019605 EMBL:BC025508 EMBL:BC080200
IPI:IPI00172284 IPI:IPI00555048 RefSeq:NP_001157949.1
RefSeq:NP_082111.2 UniGene:Mm.136224 PDB:3TS9 PDBsum:3TS9
ProteinModelPortal:Q8R5F7 SMR:Q8R5F7 STRING:Q8R5F7
PhosphoSite:Q8R5F7 PaxDb:Q8R5F7 PRIDE:Q8R5F7
Ensembl:ENSMUST00000028259 Ensembl:ENSMUST00000112459 GeneID:71586
KEGG:mmu:71586 UCSC:uc012bvy.1 InParanoid:A2AUY7 NextBio:334053
Bgee:Q8R5F7 CleanEx:MM_IFIH1 Genevestigator:Q8R5F7
GermOnline:ENSMUSG00000026896 Uniprot:Q8R5F7
Length = 1025
Score = 221 (82.9 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 62/169 (36%), Positives = 94/169 (55%)
Query: 704 PKVQS--LIK----ILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFV--KSAS 754
PK ++ LIK IL ++ +E+ R IIF + + L + E + V K+
Sbjct: 694 PKYENEKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHH 753
Query: 755 LIGHNNSQEMRTF---QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
LIG +S E++ + +E I+KFR G + LL+AT+VAEEGLDI++CN+VIR+ L
Sbjct: 754 LIGAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNE 813
Query: 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIER 860
+A +Q+RGRAR S Y+L+ G S T + E + +AI R
Sbjct: 814 IAMVQARGRARADESTYVLVTSSG--SGVTEREIVNDFREKMMYKAINR 860
Score = 192 (72.6 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 77/300 (25%), Positives = 137/300 (45%)
Query: 271 HN-RAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGA 328
HN G+++ + + + V + + PE Q RPYQ++V + A KN I L TG+
Sbjct: 276 HNSNMGRDSGTMGSDSDESVIQTKRVSPE-PELQLRPYQMEVAQPALDGKNIIICLPTGS 334
Query: 329 GKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY--CGEM 386
GKT +AV + + + ++ ++ + LV KV L Q +E Y+ Y G
Sbjct: 335 GKTRVAVYITKDHLDKKKQASESGKVIVLVNKVMLAEQLFR--KEFNPYLKKWYRIIGLS 392
Query: 387 GQDFWDAQRWQREFDTKQVLVMTAQILLNILRH------SIIKMEAINLLILDECHHAVK 440
G D + + V++ TAQIL N L + +++ +L+I+DECHH K
Sbjct: 393 G-DTQLKISFPEVVKSYDVIISTAQILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNK 451
Query: 441 KHPYSLVMSEFY------HTTSKEKRPSV-----FGMTASPVNLKGVSSQVDCAIKICNL 489
+ Y+ +M + + K+ +P++ G+TASP + Q + I N+
Sbjct: 452 EAVYNNIMRRYLKQKLRNNDLKKQNKPAIPLPQILGLTASP-GVGAAKKQSEAEKHILNI 510
Query: 490 ESKLDS-VVCTIKDRKELEKH-VPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSS 547
+ LD+ + T+K+ KH + P + V D E+L ++ +++ Q S
Sbjct: 511 CANLDAFTIKTVKENLGQLKHQIKEPCKKFVIADDTREN-PFKEKLLEIMASIQTYCQKS 569
Score = 43 (20.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 18/67 (26%), Positives = 27/67 (40%)
Query: 106 SNNGSDKDGV--DRKRKLENCENVNGYLVNGKAGGRLSDHFTKEN----GVHRDNGNNDH 159
+ +G+ KD V + RK +N + A L +T E V D+ +D
Sbjct: 591 AKDGNRKDRVCAEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAVLNDSDKSDD 650
Query: 160 EASRIRD 166
EAS D
Sbjct: 651 EASSCND 657
>UNIPROTKB|A2A376 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00382 SMART:SM00490
GO:GO:0005524 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
EMBL:AL161783 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
GO:GO:0032728 EMBL:AL353671 HGNC:HGNC:19102 HOGENOM:HOG000230911
HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182 SMR:A2A376
Ensembl:ENST00000379868 Uniprot:A2A376
Length = 722
Score = 235 (87.8 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 72/222 (32%), Positives = 112/222 (50%)
Query: 305 RPYQLDV-LEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQL++ L K KNTI TG GKT +++L+ Q +K VF ++P+
Sbjct: 41 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPV 99
Query: 364 VYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
QQ V E+ GY V G ++ ++ + ++++T QIL+N L+
Sbjct: 100 YEQQKSVFSKYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVNNLKKG 155
Query: 421 II-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVFGMTASPVNLKGV 476
I + L+I DECH+ K+HPY+++M + S P V G+TAS V + G
Sbjct: 156 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGV-GD 213
Query: 477 SSQVDCAIK-ICNLESKLD-SVVCTIKDR-KELEKHVPMPSE 515
+ D A+ IC L + LD SV+ T+K +ELE+ V P +
Sbjct: 214 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 255
Score = 172 (65.6 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 55/182 (30%), Positives = 83/182 (45%)
Query: 704 PKVQSLIKILLKYQHTE-DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN--N 760
PK++ L IL + H + I+FV+ L P LSF+K L G N
Sbjct: 406 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 465
Query: 761 SQEMRTFQMQETIAK-FR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
T Q+ I F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+R
Sbjct: 466 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 525
Query: 819 GRARKPGSDYILMIERGNL---SHATFLRNARNSEETLR----KEAIERTDLSHLKDTSR 871
GR R GS L+ + + ++ LR EA+ R + H++ +
Sbjct: 526 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 585
Query: 872 LI 873
I
Sbjct: 586 FI 587
>UNIPROTKB|B3KWW1 [details] [associations]
symbol:DDX58 "cDNA FLJ44001 fis, clone TESTI4022716, highly
similar to Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671 UniGene:Hs.190622
HGNC:HGNC:19102 HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182
EMBL:AK125989 SMR:B3KWW1 STRING:B3KWW1 Ensembl:ENST00000542096
UCSC:uc010mji.3 Uniprot:B3KWW1
Length = 854
Score = 235 (87.8 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 72/222 (32%), Positives = 112/222 (50%)
Query: 305 RPYQLDV-LEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQL++ L K KNTI TG GKT +++L+ Q +K VF ++P+
Sbjct: 173 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPV 231
Query: 364 VYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
QQ V E+ GY V G ++ ++ + ++++T QIL+N L+
Sbjct: 232 YEQQKSVFSKYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVNNLKKG 287
Query: 421 II-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVFGMTASPVNLKGV 476
I + L+I DECH+ K+HPY+++M + S P V G+TAS V + G
Sbjct: 288 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGV-GD 345
Query: 477 SSQVDCAIK-ICNLESKLD-SVVCTIKDR-KELEKHVPMPSE 515
+ D A+ IC L + LD SV+ T+K +ELE+ V P +
Sbjct: 346 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 387
Score = 172 (65.6 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 55/182 (30%), Positives = 83/182 (45%)
Query: 704 PKVQSLIKILLKYQHTE-DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN--N 760
PK++ L IL + H + I+FV+ L P LSF+K L G N
Sbjct: 538 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 597
Query: 761 SQEMRTFQMQETIAK-FR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
T Q+ I F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+R
Sbjct: 598 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 657
Query: 819 GRARKPGSDYILMIERGNL---SHATFLRNARNSEETLR----KEAIERTDLSHLKDTSR 871
GR R GS L+ + + ++ LR EA+ R + H++ +
Sbjct: 658 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 717
Query: 872 LI 873
I
Sbjct: 718 FI 719
Score = 45 (20.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 15/78 (19%), Positives = 40/78 (51%)
Query: 476 VSSQVDCAIKICNLESKLDS----VVCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSLH 530
++ + + ++IC+ + + V C ++ D++ K + + E E +K + LW +
Sbjct: 61 INQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEK--ERNKFSELWIVE 118
Query: 531 EQLKQMEVA-VEEAAQSS 547
+ +K +E +E+ ++S
Sbjct: 119 KGIKDVETEDLEDKMETS 136
>UNIPROTKB|O95786 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0043330 "response
to exogenous dsRNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IDA;IMP] [GO:0002230 "positive regulation of
defense response to virus by host" evidence=IMP] [GO:0032727
"positive regulation of interferon-alpha production"
evidence=IDA;IMP] [GO:0045087 "innate immune response"
evidence=IMP;TAS] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0039528 "cytoplasmic
pattern recognition receptor signaling pathway in response to
virus" evidence=TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IMP;IDA;TAS] [GO:0030334 "regulation of cell migration"
evidence=IDA] [GO:0005923 "tight junction" evidence=IDA]
[GO:0032587 "ruffle membrane" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0039529 "RIG-I signaling pathway"
evidence=IMP] [GO:0003727 "single-stranded RNA binding"
evidence=IMP] [GO:0009615 "response to virus" evidence=TAS]
[GO:0034344 "regulation of type III interferon production"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IC] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0009597 "detection of virus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0051091 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0030334 GO:GO:0005923 EMBL:AL161783
EMBL:CH471071 GO:GO:0003690 Reactome:REACT_107772 GO:GO:0032587
GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0008026 GO:GO:0042993 GO:GO:0043330 GO:GO:0032727
eggNOG:COG1111 GO:GO:0032728 EMBL:AF038963 EMBL:AL353671
EMBL:BC132786 EMBL:BC136610 EMBL:BX647917 EMBL:AL137608
IPI:IPI00295503 IPI:IPI00654731 PIR:T46312 RefSeq:NP_055129.2
UniGene:Hs.190622 PDB:2LWD PDB:2LWE PDB:2QFB PDB:2QFD PDB:2RMJ
PDB:2YKG PDB:3LRN PDB:3LRR PDB:3NCU PDB:3OG8 PDB:3TMI PDB:4AY2
PDBsum:2LWD PDBsum:2LWE PDBsum:2QFB PDBsum:2QFD PDBsum:2RMJ
PDBsum:2YKG PDBsum:3LRN PDBsum:3LRR PDBsum:3NCU PDBsum:3OG8
PDBsum:3TMI PDBsum:4AY2 ProteinModelPortal:O95786 SMR:O95786
DIP:DIP-35444N IntAct:O95786 MINT:MINT-2799116 STRING:O95786
PhosphoSite:O95786 PaxDb:O95786 PRIDE:O95786
Ensembl:ENST00000379882 Ensembl:ENST00000379883 GeneID:23586
KEGG:hsa:23586 UCSC:uc003zra.3 UCSC:uc010mjk.1 CTD:23586
GeneCards:GC09M032447 HGNC:HGNC:19102 HPA:CAB012643 MIM:609631
neXtProt:NX_O95786 PharmGKB:PA134994272 HOGENOM:HOG000230911
HOVERGEN:HBG052325 InParanoid:O95786 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 PhylomeDB:O95786 ChiTaRS:DDX58
EvolutionaryTrace:O95786 GenomeRNAi:23586 NextBio:46208
ArrayExpress:O95786 Bgee:O95786 CleanEx:HS_DDX58
Genevestigator:O95786 GermOnline:ENSG00000107201 GO:GO:0009597
GO:GO:0034344 GO:GO:0039529 Uniprot:O95786
Length = 925
Score = 235 (87.8 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 72/222 (32%), Positives = 112/222 (50%)
Query: 305 RPYQLDV-LEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQL++ L K KNTI TG GKT +++L+ Q +K VF ++P+
Sbjct: 244 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPV 302
Query: 364 VYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
QQ V E+ GY V G ++ ++ + ++++T QIL+N L+
Sbjct: 303 YEQQKSVFSKYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVNNLKKG 358
Query: 421 II-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVFGMTASPVNLKGV 476
I + L+I DECH+ K+HPY+++M + S P V G+TAS V + G
Sbjct: 359 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGV-GD 416
Query: 477 SSQVDCAIK-ICNLESKLD-SVVCTIKDR-KELEKHVPMPSE 515
+ D A+ IC L + LD SV+ T+K +ELE+ V P +
Sbjct: 417 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 458
Score = 172 (65.6 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 55/182 (30%), Positives = 83/182 (45%)
Query: 704 PKVQSLIKILLKYQHTE-DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN--N 760
PK++ L IL + H + I+FV+ L P LSF+K L G N
Sbjct: 609 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 668
Query: 761 SQEMRTFQMQETIAK-FR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
T Q+ I F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+R
Sbjct: 669 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 728
Query: 819 GRARKPGSDYILMIERGNL---SHATFLRNARNSEETLR----KEAIERTDLSHLKDTSR 871
GR R GS L+ + + ++ LR EA+ R + H++ +
Sbjct: 729 GRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEK 788
Query: 872 LI 873
I
Sbjct: 789 FI 790
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 15/78 (19%), Positives = 40/78 (51%)
Query: 476 VSSQVDCAIKICNLESKLDS----VVCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSLH 530
++ + + ++IC+ + + V C ++ D++ K + + E E +K + LW +
Sbjct: 132 INQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEK--ERNKFSELWIVE 189
Query: 531 EQLKQMEVA-VEEAAQSS 547
+ +K +E +E+ ++S
Sbjct: 190 KGIKDVETEDLEDKMETS 207
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 219 (82.2 bits), Expect = 2.0e-27, Sum P(5) = 2.0e-27
Identities = 68/214 (31%), Positives = 110/214 (51%)
Query: 289 VGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSI--CNDLQ 346
+ K E E +P R YQ++ Q+ + NT+ L TG GKTL++++ + + ND
Sbjct: 273 IPKFKEGVEIIP----RDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQD 328
Query: 347 RQ--NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQ 404
+ K +A+FLV +VPLV QQA I T V GE+ A +E+D
Sbjct: 329 NSCGDSKRIALFLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEYD--- 385
Query: 405 VLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVF 464
VLV T L+N+L + + + DE HHA +H ++ V+ ++ T RP +
Sbjct: 386 VLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNYRPRIL 444
Query: 465 GMTASPVNLKGVSSQVDCAIK-ICNLESKLDSVV 497
G+TAS V++ G +S +D + I ++E ++ S V
Sbjct: 445 GLTASLVSI-G-NSTIDIVQRSIKDMEERMLSRV 476
Score = 217 (81.4 bits), Expect = 2.0e-27, Sum P(5) = 2.0e-27
Identities = 68/228 (29%), Positives = 114/228 (50%)
Query: 610 SFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGT 669
SFL AL+ ++ + QL+ + E Y +KV L++ + +S + K V + + T
Sbjct: 541 SFLKALERLDKYSKQLESIYIE-Y-TKV--LIELYALLSVLSTEGPKQVLTRLDLLMQST 596
Query: 670 NEIEE--GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE---DFRA 724
N+ E +LL+ G++ D + + SL + E D R
Sbjct: 597 NQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRI 656
Query: 725 IIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784
++FVE A L + + P ++ + L+GHN M + + Q I KFRDG+ L+
Sbjct: 657 LVFVETRFGASNLTSMLKKEPFQEYLHTKRLVGHNGVDGMDSEKQQSIIRKFRDGKCRLI 716
Query: 785 VATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR-KPGSDYILM 831
V T+V EEG+D++ CN+VI +D ++ + IQ RGRAR K S +I++
Sbjct: 717 VTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIII 764
Score = 50 (22.7 bits), Expect = 2.0e-27, Sum P(5) = 2.0e-27
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 1231 NAGDLEGRIV---TAAH-SGKRFYVESIRYEMTAESSFPRKEGYL 1271
+A D+E +I+ T +H + FY ES R+ + S+F E +L
Sbjct: 2269 DANDIENQILNPSTESHKTALLFYQESFRHAFHSLSTFVSVEEFL 2313
Score = 47 (21.6 bits), Expect = 2.0e-27, Sum P(5) = 2.0e-27
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 123 NCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSKR 176
N N N N +++ N + +N NN+ S ++ D+ ++F R
Sbjct: 200 NFNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNSLNSLFKNNDNSNKFQPR 253
Score = 44 (20.5 bits), Expect = 4.1e-27, Sum P(5) = 4.1e-27
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 122 ENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSK 175
+N N N N + +++ N + +N NN++ S F + D +K
Sbjct: 196 DNNNNFNNNNNNNNNNNKNNNNNNNNNNNNNNNNNNNNNNSLNSLFKNNDNSNK 249
Score = 42 (19.8 bits), Expect = 2.0e-27, Sum P(5) = 2.0e-27
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 998 NDEGEPLPGTARHREFYPEGVADILQGEWILSGRD-GCTGSKLFHLFMYTVKCVNNGI 1054
N+ EPL G + + IL+G ++ G G+ L Y+ V+N I
Sbjct: 1232 NESLEPLQGVNNKHPLHENRIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQI 1289
Score = 42 (19.8 bits), Expect = 1.3e-26, Sum P(5) = 1.3e-26
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 1615 HASRPSSGVSCYQRLEFVGDAV--LDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFAR 1672
+ R +S YQ + +G +D L+ F +L L D +N+
Sbjct: 1728 YMQRENSTRVYYQSKKIMGKMYDQIDQLVYIGDFLPNISLDKSNLVDGYEIYLNSAKILY 1787
Query: 1673 VAVKHKLHVHLRHGSSALDRQI 1694
K ++H LRH S+ + I
Sbjct: 1788 SQYKLQVHSLLRHYSAESEESI 1809
Score = 41 (19.5 bits), Expect = 2.6e-27, Sum P(5) = 2.6e-27
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 832 IERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISV-DAV----PGTVY-QV 885
I G L ++R S L+ E I++ +KD+ L+ V D P TV+ Q+
Sbjct: 1479 ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQL 1538
Query: 886 E 886
E
Sbjct: 1539 E 1539
Score = 41 (19.5 bits), Expect = 8.2e-27, Sum P(5) = 8.2e-27
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 100 EGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDH 159
E + + N D G + K N N N N +++ N + +N NN++
Sbjct: 169 EKIQVYKNQDIDYYGFNSINKKYNNNNDNNNNFNNNNNNNNNNNKNNNNNNNNNNNNNNN 228
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 218 (81.8 bits), Expect = 2.5e-27, Sum P(5) = 2.5e-27
Identities = 68/214 (31%), Positives = 110/214 (51%)
Query: 289 VGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSI--CNDLQ 346
+ K E E +P R YQ++ Q+ + NT+ L TG GKTL++++ + + ND
Sbjct: 262 IPKFKEGVEIIP----RDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQD 317
Query: 347 RQ--NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQ 404
+ K +A+FLV +VPLV QQA I T V GE+ A +E+D
Sbjct: 318 NSCGDSKRIALFLVDRVPLVTQQAGAIEAITNLKVCKLYGEINDSRTRAFVRSKEYD--- 374
Query: 405 VLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVF 464
VLV T L+N+L + + + DE HHA +H ++ V+ ++ T RP +
Sbjct: 375 VLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEHDFNKVV-DYIRKTDLNFRPRIL 433
Query: 465 GMTASPVNLKGVSSQVDCAIK-ICNLESKLDSVV 497
G+TAS V++ G +S +D + I ++E ++ S V
Sbjct: 434 GLTASLVSI-G-NSTIDIVQRSIKDMEERMLSRV 465
Score = 218 (81.8 bits), Expect = 2.5e-27, Sum P(5) = 2.5e-27
Identities = 68/228 (29%), Positives = 113/228 (49%)
Query: 610 SFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGT 669
SFL AL+ ++ + QL+ + E Y ++ L EL+ +S + K V + + T
Sbjct: 530 SFLKALERLDKYSKQLESIYIE-YTKVLIKLY--ELLS-VLSTEGPKQVLTGLDLLMQST 585
Query: 670 NEIEE--GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE---DFRA 724
N+ E +LL+ G++ D + + SL + E D R
Sbjct: 586 NQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISDASDGELQKDLRI 645
Query: 725 IIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784
++FVE A L + + P ++ + L+GHN M + + Q I KFRDG+ L+
Sbjct: 646 LVFVETRSGASNLTSMLKKEPFQEYLHTKRLVGHNGDDGMDSEKQQSIIRKFRDGKCRLI 705
Query: 785 VATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR-KPGSDYILM 831
V T+V EEG+D++ CN+VI +D ++ + IQ RGRAR K S +I++
Sbjct: 706 VTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIII 753
Score = 52 (23.4 bits), Expect = 2.5e-27, Sum P(5) = 2.5e-27
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 1231 NAGDLEGRIV---TAAH-SGKRFYVESIRYEMTAESSFPRKEGYL 1271
+A D+E +I+ T +H + FY ES R+ + + S+F E +L
Sbjct: 2259 DANDIENQILNPSTESHKTALLFYQESFRHALHSLSTFVSVEEFL 2303
Score = 44 (20.5 bits), Expect = 2.5e-27, Sum P(5) = 2.5e-27
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 998 NDEGEPLPGTARHREFYPEGVADILQGEWILSGRD-GCTGSKLFHLFMYTVKCVNNGI 1054
N+ EPL G + + IL+G ++ G+ G+ L Y+ V+N I
Sbjct: 1247 NESLEPLQGVNNKHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQI 1304
Score = 42 (19.8 bits), Expect = 2.5e-27, Sum P(5) = 2.5e-27
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 130 YLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRI---RDFDSEDRFSKR 176
Y N +++ N + +N NN++ + + D D+ ++F R
Sbjct: 193 YYNNNDNNNNFNNNNNNNNNNNNNNNNNNNSLNSLFKNNDNDNSNKFQPR 242
Score = 41 (19.5 bits), Expect = 5.0e-27, Sum P(5) = 5.0e-27
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 832 IERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISV-DAV----PGTVY-QV 885
I G L ++R S L+ E I++ +KD+ L+ V D P TV+ Q+
Sbjct: 1494 ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQL 1553
Query: 886 E 886
E
Sbjct: 1554 E 1554
Score = 40 (19.1 bits), Expect = 4.1e-26, Sum P(5) = 4.1e-26
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 1615 HASRPSSGVSCYQRLEFVGDAV--LDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFAR 1672
+ R +S YQ +G +D L+ F +L L D +N+
Sbjct: 1742 YMQRENSTRVYYQSKTIMGKMYDQIDQLVYIGDFLPNISLDKSNLVDDYEIYLNSAKILY 1801
Query: 1673 VAVKHKLHVHLRHGSSALDRQI 1694
K ++H LRH S+ + I
Sbjct: 1802 SQYKLQVHSLLRHYSAESEESI 1823
>UNIPROTKB|Q9BYX4 [details] [associations]
symbol:IFIH1 "Interferon-induced helicase C
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016925 "protein
sumoylation" evidence=IDA] [GO:0039528 "cytoplasmic pattern
recognition receptor signaling pathway in response to virus"
evidence=TAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP;TAS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=IMP;TAS] [GO:0003725
"double-stranded RNA binding" evidence=IDA;TAS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0034344 "regulation
of type III interferon production" evidence=TAS] [GO:0009615
"response to virus" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0032480 "negative regulation of type I interferon production"
evidence=TAS] [GO:0009597 "detection of virus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0019048 GO:GO:0042981
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 Reactome:REACT_107772 GO:GO:0003725 GO:GO:0004386
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0016925 GO:GO:0032727 eggNOG:COG1111 GO:GO:0032728
GO:GO:0009597 GO:GO:0034344 HOGENOM:HOG000230992 HOVERGEN:HBG106019
EMBL:AF095844 EMBL:AY017378 EMBL:BC046208 EMBL:BC078180
EMBL:BC111750 EMBL:AK056293 IPI:IPI00005577 IPI:IPI00556546
RefSeq:NP_071451.2 UniGene:Hs.163173 PDB:2RQB PDB:3B6E PDB:3GA3
PDB:4GL2 PDBsum:2RQB PDBsum:3B6E PDBsum:3GA3 PDBsum:4GL2
ProteinModelPortal:Q9BYX4 SMR:Q9BYX4 DIP:DIP-42607N IntAct:Q9BYX4
MINT:MINT-3381993 STRING:Q9BYX4 PhosphoSite:Q9BYX4 DMDM:134047802
PaxDb:Q9BYX4 PRIDE:Q9BYX4 Ensembl:ENST00000263642
Ensembl:ENST00000421365 Ensembl:ENST00000543192 GeneID:64135
KEGG:hsa:64135 UCSC:uc002uce.3 UCSC:uc002ucf.3 CTD:64135
GeneCards:GC02M163123 HGNC:HGNC:18873 HPA:HPA002656 MIM:606951
MIM:610155 neXtProt:NX_Q9BYX4 PharmGKB:PA134889215
InParanoid:Q9BYX4 KO:K12647 OMA:KCGQAWG OrthoDB:EOG48KR9P
PhylomeDB:Q9BYX4 ChiTaRS:IFIH1 EvolutionaryTrace:Q9BYX4
GenomeRNAi:64135 NextBio:66034 ArrayExpress:Q9BYX4 Bgee:Q9BYX4
CleanEx:HS_IFIH1 Genevestigator:Q9BYX4 GermOnline:ENSG00000115267
GO:GO:0039528 Uniprot:Q9BYX4
Length = 1025
Score = 232 (86.7 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 55/138 (39%), Positives = 83/138 (60%)
Query: 712 ILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFV--KSASLIGHNNSQEMRTF- 767
I+ +Y TE+ R IIF + +A L + E + V K+ LIG +S E +
Sbjct: 708 IMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT 767
Query: 768 --QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+ +E I+KFR G++ LL+AT+VAEEGLDI++CN+VIR+ L +A +Q+RGRAR
Sbjct: 768 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 827
Query: 826 SDYILMIERGN--LSHAT 841
S Y+L+ G+ + H T
Sbjct: 828 STYVLVAHSGSGVIEHET 845
Score = 188 (71.2 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 72/271 (26%), Positives = 127/271 (46%)
Query: 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358
PE Q RPYQ++V + A + KN I L TG+GKT +AV + + + ++ ++ + LV
Sbjct: 304 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLV 363
Query: 359 PKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ---RWQREFDTKQVLVMTAQILLN 415
KV LV Q + R++ + + +G D Q + + +++ TAQIL N
Sbjct: 364 NKVLLVEQ---LFRKEFQPFLKKWYRVIGLS-GDTQLKISFPEVVKSCDIIISTAQILEN 419
Query: 416 ILRH------SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR--------- 460
L + + +++ +L+I+DECHH K+ Y+ +M + K R
Sbjct: 420 SLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVI 479
Query: 461 --PSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-VVCTIKDR-KELEKHVPMPSEV 516
P + G+TASP + G + Q I L + LD+ + T+K+ +L+ + P +
Sbjct: 480 PLPQILGLTASP-GVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 538
Query: 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSS 547
D A E+L ++ ++ Q S
Sbjct: 539 FAIAD-ATREDPFKEKLLEIMTRIQTYCQMS 568
Score = 49 (22.3 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 24/81 (29%), Positives = 36/81 (44%)
Query: 593 NYALGELGQWCAYKVAQSFL-TALQ-NDERANYQLDVKFQESYL--SKVVSLLQCELVEG 648
N + L Q +V + L T +Q N E+ + ++ ES S VVS L EG
Sbjct: 206 NAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGMENNSSESSFADSSVVSESDTSLAEG 265
Query: 649 AVSKKDAKVVDSENGFVEGGT 669
+VS D + + N + GT
Sbjct: 266 SVSCLDESLGHNSNMGSDSGT 286
Score = 42 (19.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 162 SRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKD 200
+ + F +E++ K A V +++S +YC D+D
Sbjct: 624 THLETFYNEEKDKKFA---VIEDDSDEGGDDEYCDGDED 659
Score = 41 (19.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1667 NENFARVAVK-HKLHVHLRHGSSALDRQIRDFVKEVLEE 1704
NE FA V VK H L + H SS ++ KEV+ +
Sbjct: 741 NEKFAEVGVKAHHL-IGAGH-SSEFKPMTQNEQKEVISK 777
Score = 38 (18.4 bits), Expect = 8.5e-12, Sum P(3) = 8.5e-12
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 288 KVGKKSEAKEKMPEEQARPYQ--LDVLEQAKKKNTIAFLET 326
K K+ KE++ E R Y L + + + + LET
Sbjct: 588 KAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLET 628
Score = 37 (18.1 bits), Expect = 3.5e-27, Sum P(3) = 3.5e-27
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 652 KKDAKVVDSENGFVEGGTNEIEEGE 676
+KD K E+ EGG +E +G+
Sbjct: 633 EKDKKFAVIEDDSDEGGDDEYCDGD 657
>ZFIN|ZDB-GENE-081104-438 [details] [associations]
symbol:ifih1 "interferon induced with helicase C
domain 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-081104-438
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 EMBL:AL954669 EMBL:CABZ01064081
EMBL:CABZ01064082 EMBL:CABZ01064083 IPI:IPI00492508
Ensembl:ENSDART00000003913 Uniprot:F1R4B9
Length = 997
Score = 212 (79.7 bits), Expect = 6.2e-27, Sum P(2) = 6.2e-27
Identities = 50/130 (38%), Positives = 76/130 (58%)
Query: 712 ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV--KSASLIGHNNS---QEMRT 766
IL ++ E R IIF + ++A+ L + E P V +++ LIG + + M
Sbjct: 672 ILKEFSTREKARGIIFTQTRLSAIALCQWIEENPKFDEVGVRASYLIGGGDQSVVKPMTA 731
Query: 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
+ ++ + +FR G + LL+AT+VAEEGLDI +CNVVIR+ L +A IQ+RGR R S
Sbjct: 732 AEQKDVLKRFRTGEINLLIATTVAEEGLDIAECNVVIRYCLVTNEVAMIQARGRGRAEDS 791
Query: 827 DYILMIERGN 836
Y L+ E G+
Sbjct: 792 SYTLVAEAGS 801
Score = 191 (72.3 bits), Expect = 6.2e-27, Sum P(2) = 6.2e-27
Identities = 69/249 (27%), Positives = 113/249 (45%)
Query: 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSI 341
+E + K + ++ E + R YQ++V A ++KN I L TG+GKT +AV + +
Sbjct: 276 EEKDLKEDEDDDSSASKREIKLRDYQMEVARPALEEKNIIVCLPTGSGKTRVAVFITKEH 335
Query: 342 CNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH-YCGEMGQDFWDAQ-RWQRE 399
QR +K V LV KVPLV Q + + G + H Y E + + +
Sbjct: 336 LERKQRMGQKGKVVVLVNKVPLVEQH---YKAEFGRFLKHQYSVERVSGASQLKISFPQI 392
Query: 400 FDTKQVLVMTAQILLNILRHSI------IKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453
+ +++ TAQIL N L + I++ L+++DECHH K Y+ +M +
Sbjct: 393 IEKNDIIICTAQILENSLAKAKNGDEDGIELSQFTLMVIDECHHTKKGGVYNHIMIRYLK 452
Query: 454 TTSKE---KR--------PSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKD 502
++ K+ P + G+TASP + G SQ I + + LD+ K
Sbjct: 453 QKNRNQLLKKQDKTLVPIPQILGLTASP-GVGGAVSQQMAEEHILQICANLDAFTIKTKT 511
Query: 503 RKELEKHVP 511
+E E P
Sbjct: 512 FEEEEAKTP 520
>UNIPROTKB|Q96C10 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IMP;IDA] [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0045088 "regulation of innate immune response"
evidence=IDA] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:0032480 "negative regulation of type I
interferon production" evidence=IDA] [GO:0045824 "negative
regulation of innate immune response" evidence=IDA] [GO:0032481
"positive regulation of type I interferon production" evidence=ISS]
[GO:0009615 "response to virus" evidence=ISS] [GO:1900245 "positive
regulation of MDA-5 signaling pathway" evidence=ISS] [GO:1900246
"positive regulation of RIG-I signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0019048 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534
GO:GO:0039536 GO:GO:0045824 eggNOG:COG1111 GO:GO:1900245
GO:GO:1900246 EMBL:AK021416 EMBL:BC014949 IPI:IPI00303746
RefSeq:NP_077024.2 UniGene:Hs.55918 PDB:2RQA PDB:2W4R PDB:3EQT
PDBsum:2RQA PDBsum:2W4R PDBsum:3EQT ProteinModelPortal:Q96C10
SMR:Q96C10 IntAct:Q96C10 MINT:MINT-1460040 STRING:Q96C10
PhosphoSite:Q96C10 DMDM:50401123 PaxDb:Q96C10 PRIDE:Q96C10
DNASU:79132 Ensembl:ENST00000251642 Ensembl:ENST00000563880
GeneID:79132 KEGG:hsa:79132 UCSC:uc002hyw.3 CTD:79132
GeneCards:GC17M040255 HGNC:HGNC:29517 HPA:HPA018670 HPA:HPA019570
MIM:608588 neXtProt:NX_Q96C10 PharmGKB:PA162383566
HOGENOM:HOG000230992 HOVERGEN:HBG106019 InParanoid:Q96C10 KO:K12649
OMA:ELRPYQW OrthoDB:EOG44QT15 ChiTaRS:DHX58
EvolutionaryTrace:Q96C10 GenomeRNAi:79132 NextBio:67993
ArrayExpress:Q96C10 Bgee:Q96C10 CleanEx:HS_DHX58
Genevestigator:Q96C10 GermOnline:ENSG00000108771 GO:GO:0032481
Uniprot:Q96C10
Length = 678
Score = 217 (81.4 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 63/165 (38%), Positives = 87/165 (52%)
Query: 700 GKVTPKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV--KSASLI 756
G PK++ L KIL + + + R IIF +A L + L V ++ LI
Sbjct: 345 GPENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLI 404
Query: 757 GHNNSQE---MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA 813
G NS + M QE I KF+DG + LLVATSVAEEGLDI CNVV+R+ L ++
Sbjct: 405 GAGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEIS 464
Query: 814 YIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAI 858
+Q+RGRAR S Y + G+ L N + ETL ++A+
Sbjct: 465 MVQARGRARADQSVYAFVATEGSRELKRELIN--EALETLMEQAV 507
Score = 174 (66.3 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 66/226 (29%), Positives = 109/226 (48%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ R YQ +V+ A + KN I +L TGAGKT A + + L+ + + V LV +V
Sbjct: 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQ--DFWDAQRWQREFDTKQVLVMTAQILLNIL 417
LV Q E R + V G+MG F R +L+ TA++L L
Sbjct: 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH------DLLICTAELLQMAL 111
Query: 418 ----RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP--SVFGMTASPV 471
+++ +L+++DECHH K Y+++MS++ + +P V G+TASP
Sbjct: 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171
Query: 472 NLKGVSSQVDCAIK-ICNLESKLDSVVCTIKDRK---ELEKHVPMP 513
G +S++D AI + L + LD+ C + + +L++H P
Sbjct: 172 T--GGASKLDGAINHVLQLCANLDTW-CIMSPQNCCPQLQEHSQQP 214
Score = 42 (19.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 565 EELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603
+ L QV G++ + GA+ L + + L WC
Sbjct: 158 QPLPQVLGLTASPGTGGASKLDGAINHVLQLCANLDTWC 196
>UNIPROTKB|F1NDV4 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR016024
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0004386 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925
GeneTree:ENSGT00510000046789 OMA:KCGQAWG EMBL:AADN02058700
EMBL:AADN02058701 EMBL:AADN02058702 IPI:IPI00579734
Ensembl:ENSGALT00000018067 Uniprot:F1NDV4
Length = 689
Score = 227 (85.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 62/162 (38%), Positives = 90/162 (55%)
Query: 705 KVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV--KSASLIG--HN 759
K+ L L++ + TE+ R IIF + +AL L + P V K+ LIG HN
Sbjct: 359 KLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIGAGHN 418
Query: 760 N-SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
+ ++ M + +E I KFR G + LL+AT+VAEEGLDI++CN+VIR+ L +A +Q+R
Sbjct: 419 SETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQAR 478
Query: 819 GRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIER 860
GRAR S Y L+ G S A + E + +AI R
Sbjct: 479 GRARADESTYALVASSG--SGAVEREDVNIFRENMMYKAIRR 518
Score = 163 (62.4 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 59/224 (26%), Positives = 103/224 (45%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N I L TG+GKT +AV + + + ++ +++ + LV KVPLV Q +E +
Sbjct: 9 ENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLR--KEFNPF 66
Query: 378 VVGHY--CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI-----IKMEAINLL 430
+ Y G G + V++ TAQIL N L ++ +++ +L+
Sbjct: 67 LKRWYQVIGLSGDSELKIS-FPEVVKRYDVIICTAQILENSLLNATEEDESVRLSDFSLI 125
Query: 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKR-----------PSVFGMTASPVNLKGVSSQ 479
I+DECHH K+ Y+ +M + K ++ P + G+TASP + G S
Sbjct: 126 IIDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTASP-GVGGARSN 184
Query: 480 VDCAIKICNLESKLDSV-VCTIKDR-KELEKHVPMPSEVVVEYD 521
I + + LD+ + T+K+ +L+ V P + V D
Sbjct: 185 SKAEEHILKICANLDACRIMTVKEHASQLKNQVKEPFKKTVIAD 228
Score = 44 (20.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 289 VGKKSE-AKEKMPEEQARPYQLDVLEQAKKKNTI 321
V K+ E AK+K +E AR + D + K +NT+
Sbjct: 334 VSKQDETAKKKQLKELARKPEYDNEKLMKLRNTL 367
>ZFIN|ZDB-GENE-120612-3 [details] [associations]
symbol:dhx58 "DEXH (Asp-Glu-X-His) box polypeptide
58" species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-120612-3 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:79132 KO:K12649 EMBL:JF970230 RefSeq:NP_001244086.1
UniGene:Dr.93597 GeneID:100148871 KEGG:dre:100148871 Uniprot:G3GMG3
Length = 679
Score = 212 (79.7 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 84/279 (30%), Positives = 133/279 (47%)
Query: 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359
E + RPYQ +V++ A + +N+I +L TG GKT AV + L+ + +AV LV
Sbjct: 2 ELRLRPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEK---HLETKANAKVAV-LVN 57
Query: 360 KVPLVYQQAEVIREQTGYVVGH-Y-CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
KV LV Q ++ G+ + H Y + D + + R +++ TAQIL N L
Sbjct: 58 KVHLVDQH---YMKEFGHYLRHKYRIKAISGDSSEKDFFGRLVRVSDLVICTAQILENAL 114
Query: 418 RH----SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHT-TSKEKR-PSVFGMTASPV 471
+ +++ LL++DECHH K+ Y+ +M + KE R P + G+TASP
Sbjct: 115 NNMDEDKHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRKEGRLPQILGLTASPG 174
Query: 472 N--LKGVSSQVDCAIKIC-NLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYD--KAASL 526
K + V+ ++IC NL+SK +V T L+ VP P + EYD +
Sbjct: 175 TGGNKSLDKAVEHVLQICANLDSK---IVSTKNYTPMLQNFVPKPKK---EYDIVERRDK 228
Query: 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKE 565
+ LK M + + E + R G R+ G +E
Sbjct: 229 DPFGDHLKSMMLMIHEFMPPTVSR------GLRELGTQE 261
Score = 174 (66.3 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 58/198 (29%), Positives = 96/198 (48%)
Query: 704 PKVQSL-IKILLKYQHTEDFRAIIFVERVVAALVLP---KVFAELPSLSFVKSASLIGHN 759
PK+ L ++L ++Q T R IIF + L K EL ++ + + L G
Sbjct: 352 PKLAQLQSRLLEEFQDTNS-RGIIFSKTRRGTHCLNDWVKTNRELQRVN-ITAGILTGAG 409
Query: 760 N-SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
N + M + + I+ FR G + LL++TSVAEEGLDI +CN+V+R+ L +A Q+
Sbjct: 410 NGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQAS 469
Query: 819 GRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV 878
GRAR S Y ++ + G R + L E +E + + R+ VD
Sbjct: 470 GRARASNSVYSVVADVGG----------REVRKELVNEYLEDLTARAIDEVQRMSPVD-F 518
Query: 879 PGTVYQVESTGAVVSLNS 896
V++++ T V+ + +
Sbjct: 519 RHKVFELQKTAVVIRMEA 536
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 53 DSLSNDFFGGIDHILDSI 70
DS DFFG + + D +
Sbjct: 86 DSSEKDFFGRLVRVSDLV 103
>ASPGD|ASPL0000054215 [details] [associations]
symbol:dclA species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EnsemblFungi:CADANIAT00002628 Uniprot:C8VQK5
Length = 411
Score = 306 (112.8 bits), Expect = 1.2e-25, P = 1.2e-25
Identities = 89/273 (32%), Positives = 132/273 (48%)
Query: 352 MLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQ 411
M+++FLV V L Y+QA V+R VG G +G D W Q W + V+V TA+
Sbjct: 41 MISIFLVDSVTLSYKQAGVLRNNLDMNVGRIFGALGFDLWSRQTWTEFLEKYMVVVCTAE 100
Query: 412 ILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471
+L L H+ I+ME INLL+ DE HH K H + ++ + Y T++ KRP V GMTASPV
Sbjct: 101 VLYQCLLHAHIRMEQINLLVFDEAHHTKKDHVCARIIRDSYFPTAQSKRPRVLGMTASPV 160
Query: 472 NLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK-----AASL 526
+ KG D A NLE LDS + T + + V P E YD+ +
Sbjct: 161 DTKG-----DVAQAAMNLELYLDSKIATASQLSLVHQVVRRPKEEAWIYDRLEQSFGTEI 215
Query: 527 WSLHE----QLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGA 582
+ L E ++ +++ A Q+S +W G L+ V+ + +G
Sbjct: 216 YRLMEGRLGDIEDLKLVFRFAWQASFELGRWCSDGV--------LKYVFSAKMLPKLEGK 267
Query: 583 ANLIQKLR-----AINYALG---ELGQWCAYKV 607
+ + +LR A +Y LG E GQ ++KV
Sbjct: 268 SKELSQLRDASEVASSYILGSPEEPGQ-SSHKV 299
>UNIPROTKB|F5H5W6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
GO:GO:0005524 GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671
HGNC:HGNC:19102 ChiTaRS:DDX58 IPI:IPI01012440
ProteinModelPortal:F5H5W6 SMR:F5H5W6 Ensembl:ENST00000545044
UCSC:uc011lnr.1 ArrayExpress:F5H5W6 Bgee:F5H5W6 Uniprot:F5H5W6
Length = 536
Score = 235 (87.8 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 72/222 (32%), Positives = 112/222 (50%)
Query: 305 RPYQLDV-LEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQL++ L K KNTI TG GKT +++L+ Q +K VF ++P+
Sbjct: 41 RNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPV 99
Query: 364 VYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
QQ V E+ GY V G ++ ++ + ++++T QIL+N L+
Sbjct: 100 YEQQKSVFSKYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVNNLKKG 155
Query: 421 II-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVFGMTASPVNLKGV 476
I + L+I DECH+ K+HPY+++M + S P V G+TAS V + G
Sbjct: 156 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTAS-VGV-GD 213
Query: 477 SSQVDCAIK-ICNLESKLD-SVVCTIKDR-KELEKHVPMPSE 515
+ D A+ IC L + LD SV+ T+K +ELE+ V P +
Sbjct: 214 AKNTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQK 255
Score = 143 (55.4 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 43/128 (33%), Positives = 63/128 (49%)
Query: 704 PKVQSLIKILLKYQHTE-DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN--N 760
PK++ L IL + H + I+FV+ L P LSF+K L G N
Sbjct: 406 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTN 465
Query: 761 SQEMRTFQMQETIAK-FR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSR 818
T Q+ I F+ G +L+ATSVA+EG+DI QCN+VI ++ V+ IQ+R
Sbjct: 466 QNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTR 525
Query: 819 GRARKPGS 826
++ S
Sbjct: 526 EEEQEVAS 533
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 291 (107.5 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 71/181 (39%), Positives = 107/181 (59%)
Query: 1587 LRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLF 1646
+ SV+ A+E L F ++ LL EAIT S P + RLEF GD++L+ T ++
Sbjct: 1 MNSVE--AVEKILNYSFVNKTLLKEAITQKS-P-----LFDRLEFFGDSILEVAFTNYIC 52
Query: 1647 FSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELL 1706
+Y NL L DLR A V+NE FAR+AV H LH L + +L +++++F + V +E
Sbjct: 53 HTYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKED- 111
Query: 1707 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMH 1766
P +G G KAPK+L D +ESIA +F+D D +W++F+ LL+P+ TP+ L +
Sbjct: 112 DPV--PYG-GLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQ 168
Query: 1767 P 1767
P
Sbjct: 169 P 169
Score = 207 (77.9 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 69/258 (26%), Positives = 127/258 (49%)
Query: 1570 PEEVGCPSRPACVPESVLRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRL 1629
P+ + + P + SV+ A+E L F ++ LL E +TH + P +Q L
Sbjct: 395 PKSLDEKNNPLLFSSEMDSSVE--AVEKILNYSFVNKTLLKELLTHNNSP-----LFQGL 447
Query: 1630 EFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSA 1689
FVG++ L TKHL+ +Y L P L+ LR A ++ +A VAVK ++
Sbjct: 448 MFVGESALSLAFTKHLYLTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPK 507
Query: 1690 LDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749
++ DF+ EL+ + + + KAPK+L +++ +AGA+++D + + ++
Sbjct: 508 PEKMTTDFI-----ELMGKEDDPYRV--VKAPKILVNLLAGVAGAVYIDVKYNVQRLLEI 560
Query: 1750 FQPLLDPMVTPETLPMH---PVRELQERCQQQAEGLEYKASRSG----NLATVEVYIDGV 1802
F+ LL+P+ T + L M P L + + ++++ S+ G N+A +VY+D +
Sbjct: 561 FRVLLEPIYTLDDLRMQLKQPFLMLFRLADKHGKQIDFRYSKDGGSRKNIA--QVYMDDM 618
Query: 1803 QVGVAQNPQKKMAQKLAA 1820
+ + A+ LAA
Sbjct: 619 FIASGCAKRIDTAKLLAA 636
Score = 88 (36.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKA 1914
R L +IC + WP P++ E GP + +F +V++ + T G+ K+A
Sbjct: 309 RGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQA 368
Query: 1915 KDSAAVLLLELL 1926
++S A ++ L
Sbjct: 369 ENSLAYHMIRAL 380
Score = 84 (34.6 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L +IC + WP P++ E G + ++ +V++ + T G+ P+ K+A++S
Sbjct: 842 LFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKPTKKEAENS 901
Query: 1918 AAVLLLELL 1926
+A ++ L
Sbjct: 902 SADHMIRAL 910
Score = 71 (30.1 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 23/91 (25%), Positives = 45/91 (49%)
Query: 1371 AIQLKDKI-NYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1428
+++ +KI NY +L EA+T Q++ ++R E GD+ L+ + ++ YP
Sbjct: 3 SVEAVEKILNYSFVNKTLLKEAIT----QKSPLFDRLEFFGDSILEVAFTNYICHTYPNL 58
Query: 1429 HEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
+L +R VSN + A++ L ++
Sbjct: 59 KVKELRDLRTANVSNEKFARIAVNHNLHHFL 89
Score = 39 (18.8 bits), Expect = 3.6e-14, Sum P(3) = 3.6e-14
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 1047 VKCVNNGISKDPFLTQVSDFAVLFSSELDAELASLK 1082
V V + + K L + ++ +LFSSE+D+ + +++
Sbjct: 385 VSLVISNLQKPKSLDEKNN-PLLFSSEMDSSVEAVE 419
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 201 (75.8 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 63/211 (29%), Positives = 103/211 (48%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQ D Q +NTI L TG GKTL+++L + +++N +A+FLV + L
Sbjct: 21 RQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNNILLG 80
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQ E I+ T V G+ D Q ++ +D ++V T QIL+N++ + I++
Sbjct: 81 KQQTETIKNLTDKRVMVLSGD---DL-SFQTKKKNYD---IVVATPQILMNLINKNKIRI 133
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVD--C 482
+ + +I DE H+A Y +MS RP + G+TAS LK S+
Sbjct: 134 DNFHFIIFDEVHNATGLDNYCKIMS-LVKNLDPPFRPRILGLTASV--LKNASNYTTERA 190
Query: 483 AIKICNLES-KLDSVVCTI----KDRKELEK 508
+I LE L + C + KD+++ ++
Sbjct: 191 TNEIKKLEDIMLSKIYCPLIEIFKDQQQQQQ 221
Score = 189 (71.6 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 62/201 (30%), Positives = 102/201 (50%)
Query: 703 TPKVQSLIKIL---LKYQHTED-FRAIIFVE-RVVAALVLPKVFAELPSLSFVKSASLIG 757
T K +SL+K+L +K + D I+FVE R +L + +E +S + + G
Sbjct: 372 TNKFKSLLKLLSIEIKENNINDKINCIVFVETRDTGKKLLNLLISE-KEISKLNPKLIYG 430
Query: 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS 817
HN M+ + Q+ I +F++G +LV+T+V EEG+DI++CN VI FD ++ + IQ
Sbjct: 431 HNGRNGMKHSEQQQIIQQFKEGVCQVLVSTNVLEEGIDIKECNSVICFDNLYSLKSLIQR 490
Query: 818 RGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIE-RTDLSHLKDTSRLISVD 876
RGR R S + L++E+ L + SE + + I+ TD K+ S S
Sbjct: 491 RGRDRTCSS-FTLILEQDQRLR---LEDLIKSEIIINRSLIDIMTDRMRQKELSTSSSST 546
Query: 877 AVPGTVYQVESTGAVVSLNSA 897
+ + S V SL+S+
Sbjct: 547 SSSSSSSSNNSISMVSSLSSS 567
Score = 42 (19.8 bits), Expect = 3.1e-23, Sum P(3) = 3.1e-23
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 1361 IMRRVESMLLAIQLKDKINYPVPASKILEAL--TAASCQETFCYERAELLG--DAYLK-- 1414
+++ +S L+ IQ DK V S+ L + T+ + E Y E L D +K
Sbjct: 1382 LLKLYKSKLIKIQ--DKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVEELDPIDNLMKPK 1439
Query: 1415 WVVSRFLFLKYPQKHEGQL 1433
++ R LK P H G +
Sbjct: 1440 VIIGRVAVLKNPCHHPGDV 1458
Score = 41 (19.5 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 982 LLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVADI 1021
L+ ++ S + Q + D ND P T + P ++DI
Sbjct: 1529 LIGEEDSDDDQYENDDNDITIPTSTTTKSTNNTPTKLSDI 1568
Score = 38 (18.4 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 743 ELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLV 785
ELP L F++S S + + E R TI + TL +
Sbjct: 277 ELPILKFIQSLSSLKPKLTSE-RDSSEYATIVNLCNSLTTLSI 318
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 1479 DEDTKDGDSSLFDQEKSVAEDKLGTDKN 1506
D+D D DS S +++ +D N
Sbjct: 633 DDDENDSDSDSDSDGDSDSDNNSNSDNN 660
Score = 37 (18.1 bits), Expect = 9.4e-08, Sum P(3) = 9.4e-08
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 640 LLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELL 678
LL + E +SK + K++ NG G E+ +++
Sbjct: 410 LLNLLISEKEISKLNPKLIYGHNG--RNGMKHSEQQQII 446
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 195 (73.7 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 64/203 (31%), Positives = 95/203 (46%)
Query: 284 ECNGKVGKKSEAKEK--MPE-EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRS 340
E N + K +A + P+ +Q R YQ + EQA N + L TG GKT IA +++ +
Sbjct: 88 ENNIDIPKNIDAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLN 147
Query: 341 ICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400
R + +FL P PL+ QQ G G G+ D + + E+
Sbjct: 148 YF----RWFPESKIIFLAPTKPLLLQQRVACSNVAGMSPGATAELNGEVSPDRRLF--EY 201
Query: 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460
+TK+V MT Q L N L+ ++ ++I LI DE H A H Y+ VM + S +
Sbjct: 202 NTKRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFR- 260
Query: 461 PSVFGMTASP-VNLKGVSSQVDC 482
V G+TA+P + V VDC
Sbjct: 261 --VLGLTATPGSSTASVQKVVDC 281
Score = 167 (63.8 bits), Expect = 6.6e-23, Sum P(2) = 6.6e-23
Identities = 61/206 (29%), Positives = 103/206 (50%)
Query: 704 PKVQSLIKILLKY--QHTEDF---RAIIFVE-RVVAALVLPKVFAELPSLSFVKSASLIG 757
PK+ L+++L ++ +E + R +IF E R A + + A P V+++ IG
Sbjct: 449 PKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRP---MVRASLFIG 505
Query: 758 HNNSQE---MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY 814
NS M Q +ETI +FR G + LVATS+ EEGLDI +++I +D + + +
Sbjct: 506 QANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRT 565
Query: 815 IQSRGRA--RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRL 872
IQ GR +K G ++L+ E + + + R+ + S ++K ++ KD RL
Sbjct: 566 IQRMGRTGRKKSGKVFVLLTE--DCEDSKWERS-QVSYRRVQKVIESGKKIALKKDVPRL 622
Query: 873 ISVDAVPGTVYQV--ESTGAVVSLNS 896
I + P +Q + A + LNS
Sbjct: 623 IPSNIQPIFKFQALQNNADATLILNS 648
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 204 (76.9 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 70/226 (30%), Positives = 111/226 (49%)
Query: 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQ ++++ A + KN + TG+GKT +A+ + Q K V LVPK+PL
Sbjct: 372 RTYQEELVQPALEGKNCVIVAPTGSGKTEVAIYAALKHIEERTSQGKPSRVVLLVPKIPL 431
Query: 364 VYQQAE-VIREQTG-YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
V QQ + ++ G Y V + G +R E V VMT QIL+N+L+ S+
Sbjct: 432 VGQQKDRFLKYCNGMYEVNGFHGSESSVSGTGRR--DEVIATHVSVMTPQILINMLQ-SV 488
Query: 422 IKMEAI-----NLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS-PVNLKG 475
+ E + +++I DE H A K HPY L+ ++ EK P + G+TAS V + G
Sbjct: 489 RQNERLYVSDFSMMIFDEVHKAAKNHPYVLI-NQMVQEWKYEK-PQIIGLTASLSVKVDG 546
Query: 476 VSSQVDCAIKICNLESKLDSV-VCTIKDRK---ELEKHVPMPSEVV 517
+ I N+ + +++ + TI + EL +HV P + V
Sbjct: 547 QKDENQMLNDIYNMLALINAPHLSTITRQSSIDELNEHVGKPDDSV 592
Score = 167 (63.8 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 56/190 (29%), Positives = 97/190 (51%)
Query: 702 VTPKVQSLIKILLKYQ-HTE-DFRAIIFV------ERVVAALVLPKVFAELPSLSFVKSA 753
V P++ +K L Q H + R IIFV +RV L KV + +
Sbjct: 739 VEPEIVLRLKNTLTNQFHVAPESRVIIFVTQRSTAQRVSDFLNESKVLDQFGNYGEQMVG 798
Query: 754 SLIGHNNSQEMR-TFQMQE-TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-T 810
++G N ++ T Q Q+ T+ KF +GR+ ++VATSV EEGLD+ CN++I+++ + +
Sbjct: 799 YVLGTNKQGAVQQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGS 858
Query: 811 VLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLR---KEAIERTDLSHLK 867
+ +Q RGRAR S +L+ + +++ NA SE+ +R K+ E +
Sbjct: 859 AIQLVQQRGRARAKNSRSVLLSVKSSINETE--TNALISEKYMRLCVKKITENGEKQLAA 916
Query: 868 DTSRLISVDA 877
+ R+ ++A
Sbjct: 917 EVKRVAELNA 926
Score = 42 (19.8 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 22/107 (20%), Positives = 50/107 (46%)
Query: 1354 GAQRLPSIMRRVESMLLAIQ---LKDKINYPVPASKILEALTAASCQETFCYE-RAELLG 1409
G ++L + ++RV + A + L++++N + + L ++C + FC + +
Sbjct: 910 GEKQLAAEVKRVAELNAAERKRNLEEQLNLRLRHENKIYKLMCSNCSKEFCKSIYIKKVF 969
Query: 1410 DAYLKWVVS--RFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKG 1454
Y+ + S RFL ++ +K L+ Q + S++ + L G
Sbjct: 970 SNYMVFDPSVWRFLHVESKRKVSKYLSEDNQPL-SDIKCFHCKLDVG 1015
Score = 37 (18.1 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 758 HNNSQEMRTFQMQE 771
HN EM+ F +Q+
Sbjct: 1094 HNKQLEMKRFHIQQ 1107
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 184 (69.8 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 62/227 (27%), Positives = 112/227 (49%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQ +++++A +N + L TG GKT IA +++ N L R K VF+ P PLV
Sbjct: 74 RDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMM---NYL-RWFPKSYIVFMAPTKPLV 129
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQ E + TG + E+ R Q + ++ V +T Q +LN ++H I
Sbjct: 130 TQQMEACYKITG-IPKSQTAELSGHVPVTTRNQY-YQSRNVFFVTPQTILNDIKHGICDR 187
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTS-KEKRPSVFGMTASPVN-LKGVSSQVDC 482
I+ L++DE H + + Y E H S K + ++A+P N L+ + + +D
Sbjct: 188 TRISCLVIDEAHRSTGNYAYV----EVVHLLSLSNKNFRILALSATPGNKLEAIQNVID- 242
Query: 483 AIKICNLESKLD-SV-VCTIKDRKELEKH-VPMPSEVVVEYDKAASL 526
++ I +E + + S+ + +KE++ V + +E+ D+ +S+
Sbjct: 243 SLHISRIEIRTENSIDISQYVQKKEVDFFPVDLSAEITDIRDRFSSI 289
Score = 170 (64.9 bits), Expect = 5.8e-22, Sum P(2) = 5.8e-22
Identities = 52/177 (29%), Positives = 93/177 (52%)
Query: 704 PKVQSLIKILLKY---QHTEDFRAIIFVE-RVVAALVLPKVFAELPSLSFVKSASLIGHN 759
PK++ L +I+ +Y + T+D R +IFVE R A +L + P+ V+ A IG +
Sbjct: 412 PKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPN---VRPAIFIGQS 468
Query: 760 NSQE---MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816
++ M ET+ +F+ G V L+ATS+ EEGLDI + +++I +D + + + +Q
Sbjct: 469 AVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQ 528
Query: 817 SRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLI 873
GR + YI M+ A + R A+++ TL+ + LS + + R++
Sbjct: 529 RMGRTGRKRKGYIYMLLTRGKEEAKWER-AKDAYRTLQDNIVSGRGLSLSEKSYRIL 584
>UNIPROTKB|A4RN08 [details] [associations]
symbol:MPH1 "ATP-dependent DNA helicase MPH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 eggNOG:COG1111
KO:K14635 OrthoDB:EOG4JHGPV RefSeq:XP_003713523.1
ProteinModelPortal:A4RN08 STRING:A4RN08 EnsemblFungi:MGG_04429T0
GeneID:2678216 KEGG:mgr:MGG_04429 Uniprot:A4RN08
Length = 1102
Score = 185 (70.2 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 67/242 (27%), Positives = 116/242 (47%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQ +++ NT+ L TG GKT IA +I + +N +M VF+ P PL
Sbjct: 141 RDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNFFR--WTRNAQM--VFVAPTKPLA 196
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQ E G G+ R + E++ K++ MT Q L+N L
Sbjct: 197 SQQVEACLNIAGIPRSQSTLLTGETK-PVLR-EAEWEGKRLFFMTPQTLMNDLSKGYADP 254
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN-LKGVSSQVDCA 483
+ I LL++DE H A + Y V+ EF SK R V +TA+P + ++GV +D
Sbjct: 255 KRIVLLVVDEAHRATGDYAYVKVI-EFIRRFSKSFR--VLALTATPGSTVEGVQDVID-N 310
Query: 484 IKICNLESKLDSVVCTIKD---RKELEKHVPMPSEVVVEYDKAAS--LWSLHEQLKQMEV 538
+ + ++E + + + I++ +E+++ V PS+ ++ + S L LH ++ Q ++
Sbjct: 311 LGVSHVEIRTEESI-DIRNYVHSREIDRVVLEPSDEMLRISELFSQALKPLHSKISQQKI 369
Query: 539 AV 540
+
Sbjct: 370 YI 371
Score = 175 (66.7 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 53/182 (29%), Positives = 89/182 (48%)
Query: 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVF-AELPSLSFVKSASLIGHN 759
K+T +L+ + R I+F E +A + +V P +S
Sbjct: 483 KLTHLCDNLLNYFMDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQADSK 542
Query: 760 NSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819
S+ M+ Q ETIAKFRDG +LVATS+ EEGLDI Q +++I +D + + + +Q G
Sbjct: 543 KSEGMKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMG 602
Query: 820 RA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKD-TSRLISVDA 877
R RK L++ +G + + A+++ E ++K E + + D +SR++ D
Sbjct: 603 RTGRKRAGKITLLLMKGK-EEDNYAK-AQDNYEKMQKLICEGSRFNFRHDLSSRIVPRDV 660
Query: 878 VP 879
P
Sbjct: 661 KP 662
Score = 41 (19.5 bits), Expect = 4.0e-21, Sum P(3) = 4.0e-21
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 921 IMERHEKPGGPTEYSCKLQLPCNAPFEKLEG 951
I RH KP G T+ S L + PF + G
Sbjct: 821 IETRHTKPHGDTDKSRYLDISV-PPFAEDSG 850
>WB|WBGene00001090 [details] [associations]
symbol:drh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016246
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 HSSP:P10081
EMBL:AF480439 EMBL:FO080250 PIR:T32534 RefSeq:NP_501018.1
UniGene:Cel.32668 ProteinModelPortal:G5EDI8 SMR:G5EDI8
IntAct:G5EDI8 EnsemblMetazoa:F15B10.2 GeneID:177425
KEGG:cel:CELE_F15B10.2 CTD:177425 WormBase:F15B10.2 OMA:YRMINIR
NextBio:896758 Uniprot:G5EDI8
Length = 1037
Score = 179 (68.1 bits), Expect = 8.6e-21, Sum P(3) = 8.6e-21
Identities = 64/238 (26%), Positives = 115/238 (48%)
Query: 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQ ++ + A + KNTI TG+GKT+IA +I+ + K+ A+F+ P +
Sbjct: 294 RNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEHFESRSSEGKRFKALFMTPNSMI 353
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL---RHS 420
+ QQA I +V Y ++ Q D + +K ++V T Q+++N+ R+S
Sbjct: 354 LNQQAASISSYLDHV---YHTQIIQGS-DNVPTRNVIQSKDLIVATPQMIVNLCNEHRNS 409
Query: 421 I--------IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK------EKRPSVFGM 466
+ + ++ DECH+ VK PYS +M E+++ + P + G+
Sbjct: 410 LDDESRLDQFFLSTFTIIFFDECHNTVKNSPYSNIMREYHYLKNMGNMPEGHSLPQIIGL 469
Query: 467 TASPVNLKGVSSQVDCA-IK--ICNLESKLD-SVVCTIKDR-KELEKHVPM-PSEVVV 518
TAS G + DC ++ I L + +D + +KD +EL + P+ P +V++
Sbjct: 470 TAS----LGTGDKNDCLQVRNYIAGLCASMDVKDLSIVKDNLEELRGYSPIVPDKVLL 523
Score = 177 (67.4 bits), Expect = 8.6e-21, Sum P(3) = 8.6e-21
Identities = 53/150 (35%), Positives = 82/150 (54%)
Query: 692 IIGAAVADGKVTPK-VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVF---AELPSL 747
++G A+ + K VQ +++ L+ D R IIFV A +L KV EL L
Sbjct: 672 LVGTGSAENPMISKTVQYIVEQNLQ---RADSRTIIFVRTRYEATILNKVLNSNEELLML 728
Query: 748 SFVKSASLIGHNNSQEMR-----TFQMQ-ETIAKFRDGRVTLLVATSVAEEGLDIRQCNV 801
+KS + G N S + Q Q E + F DG + +LV+TSVAEEGLD+ +C++
Sbjct: 729 G-IKSEWMSGLNKSTASSADISASKQKQMEKLKMFADGEIRILVSTSVAEEGLDVPECSL 787
Query: 802 VIRFDLAKTVLAYIQSRGRARKPGSDYILM 831
VI+++ A +A++Q RGR R S+ +L+
Sbjct: 788 VIKYNYATNEIAHVQRRGRGRALNSECVLI 817
Score = 41 (19.5 bits), Expect = 8.6e-21, Sum P(3) = 8.6e-21
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 1730 SIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQ 1776
S + L G D ++ + ++ +LD TP + V+ +++ Q
Sbjct: 969 SALSIVLLVEGTDKRIIVKKWKNILDKYFTPTEIRQLDVQTMRDADQ 1015
>UNIPROTKB|I3LJY5 [details] [associations]
symbol:LOC100737466 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 Ensembl:ENSSSCT00000022741 OMA:CKRAVDE
Uniprot:I3LJY5
Length = 319
Score = 257 (95.5 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 74/244 (30%), Positives = 118/244 (48%)
Query: 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRS 340
NQ + SEA + R YQL++ A+ KNTI TG GKT +++L+
Sbjct: 72 NQNLSQNSCSSSEAPHTYSPLKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEH 131
Query: 341 ICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQ 397
R +K VF ++P+ QQ V E+ GY V G D +
Sbjct: 132 HLKKFPR-GRKGKVVFFAIQLPVYEQQKSVFSKHFERLGYKVAGISGATS----DTVCVE 186
Query: 398 REFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT- 455
+ + ++++T QIL+N L + I + L+I DECH+ K+HPY+++M +
Sbjct: 187 QIVENNDIIILTPQILVNCLTNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKL 246
Query: 456 --SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHVP 511
S + P V G+TAS V + ++ + IC L + LD SV+ T++D +ELE+ V
Sbjct: 247 GGSSDSLPQVIGLTAS-VGVGDAKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVY 305
Query: 512 MPSE 515
P +
Sbjct: 306 KPQK 309
>UNIPROTKB|D4ADT5 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR007087 InterPro:IPR011545 Pfam:PF00270
PROSITE:PS00028 RGD:1309460 GO:GO:0005524 GO:GO:0008270
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 IPI:IPI00778544
Ensembl:ENSRNOT00000060765 ArrayExpress:D4ADT5 Uniprot:D4ADT5
Length = 596
Score = 266 (98.7 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 80/255 (31%), Positives = 124/255 (48%)
Query: 283 QECNGKVGKKSEAKEKMPEEQARP--YQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIR 339
Q + G SEA +P YQL++ AKK KNT+ TG GKT +++L+
Sbjct: 221 QNLSQNPGPPSEASPNNSHSPLKPRNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICE 280
Query: 340 SICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRW 396
+ K + VF ++P+ QQA V E+ GY V G D
Sbjct: 281 HHLKNFPHGQKGKV-VFFANQIPVYEQQATVFSRYFERFGYNVAGISGATA----DNVSV 335
Query: 397 QREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFY-HT 454
Q + ++++T QIL+N L + I + L+I DECH+ K HPY+ +M + H
Sbjct: 336 QHIIENNDIVILTPQILVNSLNNGAIPSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHK 395
Query: 455 T--SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHV 510
S + P V G+TAS V + G + + + IC L + LD SV+ T++D +ELE+ V
Sbjct: 396 LGGSPDPLPQVIGLTAS-VGV-GDAKTEEAMLHICKLCAALDASVIATVRDNVEELEQXV 453
Query: 511 PMPSEVVVEYDKAAS 525
P ++ + + AS
Sbjct: 454 YKPQKISRKVESRAS 468
>UNIPROTKB|I3LGW3 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00510000046789 OMA:KCKAFAC
EMBL:FP340205 Ensembl:ENSSSCT00000026775 Uniprot:I3LGW3
Length = 960
Score = 257 (95.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 74/244 (30%), Positives = 118/244 (48%)
Query: 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRS 340
NQ + SEA + R YQL++ A+ KNTI TG GKT +++L+
Sbjct: 220 NQNLSQNSCSSSEAPHTYSPLKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEH 279
Query: 341 ICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQ 397
Q +K VF ++P+ QQ V E+ GY V G D +
Sbjct: 280 HLKKFP-QGRKGKVVFFAIQLPVYEQQKSVFSKHFERLGYKVAGISGATS----DTVCVE 334
Query: 398 REFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT- 455
+ + ++++T QIL+N L + I + L+I DECH+ K+HPY+++M +
Sbjct: 335 QIVENNDIIILTPQILVNCLTNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKL 394
Query: 456 --SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHVP 511
S + P V G+TAS V + ++ + IC L + LD SV+ T++D +ELE+ V
Sbjct: 395 GGSSDSLPQVIGLTAS-VGVGDAKNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVY 453
Query: 512 MPSE 515
P +
Sbjct: 454 KPQK 457
Score = 192 (72.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 94/404 (23%), Positives = 174/404 (43%)
Query: 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDR 503
++L++ + H TSK+ +V L G S D ++ L + + V K++
Sbjct: 365 FTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSS---DSLPQVIGLTASVG--VGDAKNK 419
Query: 504 KELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGA 563
E +++ ++ D + + ++ + L+++E V + Q R+ + +
Sbjct: 420 AEATEYI---CKLCASLDTSV-IATVRDNLEELEEVVYKP-QKFFRKVELRTTDRFKCII 474
Query: 564 KEELRQVYGVSERT-ESDGAANL--IQKLRAINYALGELGQWCAYKVAQSFLTALQNDER 620
+ + ++ +++ E G L + +++ N+ + QW KV Q Q ++
Sbjct: 475 SQLMMEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIV-KV-QKECAVFQMPDK 532
Query: 621 ANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAK--VVDSENGFVEGGTNEIEEGELL 678
K SY+S + ++ KDA + D G +EIE+ +L
Sbjct: 533 DKESRICKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQ-DLT 591
Query: 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE-DFRAIIFVERVVAALVL 737
E + + ++ PK++ L IL + H + R I+FV+ L
Sbjct: 592 QRFE----EKLQELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDAL 647
Query: 738 PKVFAELPSLSFVKSASLIGHNNSQEM--RTFQMQETIAK-FR-DGRVTLLVATSVAEEG 793
K E P LSF+K + L G + + T Q+ + FR D +L+ TSVA+EG
Sbjct: 648 KKWIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEG 707
Query: 794 LDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNL 837
+DI QCN+VI ++ V+ IQ+RGR R GS L+ +L
Sbjct: 708 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADL 751
>UNIPROTKB|Q9GLV6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0032587 "ruffle membrane"
evidence=ISS] [GO:0015629 "actin cytoskeleton" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0003727
"single-stranded RNA binding" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0030334 "regulation
of cell migration" evidence=ISS] [GO:0039529 "RIG-I signaling
pathway" evidence=ISS] [GO:0045087 "innate immune response"
evidence=ISS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISS] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0032727 GO:GO:0032728
HOVERGEN:HBG052325 GO:GO:0039529 EMBL:AF181119 UniGene:Ssc.15885
ProteinModelPortal:Q9GLV6 SMR:Q9GLV6 Uniprot:Q9GLV6
Length = 940
Score = 248 (92.4 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 69/221 (31%), Positives = 111/221 (50%)
Query: 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363
R YQL++ A+ KNTI TG GKT +++L+ R +K VF ++P+
Sbjct: 242 RKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPR-GRKGKVVFFAIQLPV 300
Query: 364 VYQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS 420
QQ V E+ GY V G D ++ + ++++T QIL+N L +
Sbjct: 301 YEQQKSVFSKHFERLGYKVAGISGATS----DTVCVEQIVENSDIIILTPQILVNCLTNG 356
Query: 421 II-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT---SKEKRPSVFGMTASPVNLKGV 476
I + L+I DECH+ K+HPY+++M + S + P V G+TAS V +
Sbjct: 357 TIPSLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTAS-VGVGDA 415
Query: 477 SSQVDCAIKICNLESKLD-SVVCTIKDR-KELEKHVPMPSE 515
++ + IC L + LD SV+ T++D +ELE+ V P +
Sbjct: 416 KNKAEATEYICKLCASLDTSVIATVRDNLEELEEVVYKPQK 456
Score = 193 (73.0 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 94/404 (23%), Positives = 175/404 (43%)
Query: 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDR 503
++L++ + H TSK+ +V + L G S D ++ L + + V K++
Sbjct: 364 FTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSS---DSLPQVIGLTASVG--VGDAKNK 418
Query: 504 KELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGA 563
E +++ ++ D + + ++ + L+++E V + Q R+ + +
Sbjct: 419 AEATEYI---CKLCASLDTSV-IATVRDNLEELEEVVYKP-QKFFRKVELRTTDRFKCII 473
Query: 564 KEELRQVYGVSERT-ESDGAANL--IQKLRAINYALGELGQWCAYKVAQSFLTALQNDER 620
+ + ++ +++ E G L + +++ N+ + QW KV Q Q ++
Sbjct: 474 SQLMMEIESLAKSIFEELGTITLGGLFQIQNSNFGTQKYEQWIV-KV-QKECAVFQMPDK 531
Query: 621 ANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAK--VVDSENGFVEGGTNEIEEGELL 678
K SY+S + ++ KDA + D G +EIE+ +L
Sbjct: 532 DKESRICKALFSYMSHLRIYNDALIINEHARMKDALDYLKDFFRNIRAAGFDEIEQ-DLT 590
Query: 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE-DFRAIIFVERVVAALVL 737
E + + ++ PK++ L IL + H + R I+FV+ L
Sbjct: 591 QRFE----EKLQELESISIDPSNENPKLRDLCFILQEEYHLNPETRTILFVKTRALVDAL 646
Query: 738 PKVFAELPSLSFVKSASLIGHNNSQEM--RTFQMQETIAK-FR-DGRVTLLVATSVAEEG 793
K E P LSF+K + L G + + T Q+ + FR D +L+ TSVA+EG
Sbjct: 647 KKWIKENPKLSFLKPSILTGRGKTNQNIGMTLPAQKCVLDTFRTDKDNKILITTSVADEG 706
Query: 794 LDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNL 837
+DI QCN+VI ++ V+ IQ+RGR R GS L+ +L
Sbjct: 707 IDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTANADL 750
>UNIPROTKB|F1SI11 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071821 "FANCM-MHF complex" evidence=IEA] [GO:0043240
"Fanconi anaemia nuclear complex" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000005515 Uniprot:F1SI11
Length = 2054
Score = 191 (72.3 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 74/277 (26%), Positives = 119/277 (42%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL++ A NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 156
Query: 365 YQQAEVIREQTGYVVGHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
QQ E G H G Q F + W D+K+VL +T Q+++N L
Sbjct: 157 TQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIW----DSKRVLFLTPQVMVNDLSRGAC 212
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP-VNLKGVSSQV- 480
I L++DE H A+ + Y V+ E T+ + + ++A+P ++K V +
Sbjct: 213 PAAEIKCLVIDEAHRALGNYAYCQVVRELVKYTNHFR---ILALSATPGSDIKAVQQVIT 269
Query: 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA--ASLWSLHEQLKQMEV 538
+ I+ L S+ + + +EK V SE + KA L + L Q V
Sbjct: 270 NLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQILEAFAHSLIQRNV 329
Query: 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSE 575
+ + +K+Q + ARD K + G+ +
Sbjct: 330 LMR---RDIPNLTKYQIILARDQFRKNPSPNIVGMQQ 363
Score = 131 (51.2 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 32/128 (25%), Positives = 64/128 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + M+ F +E + +FR G LV+T V EEGLDI + +++I FD
Sbjct: 512 IRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFD 571
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G T+ ++ N + + + L
Sbjct: 572 AQKSPIRLVQRMGRTGRKRQGRIVVILAEGR-EERTYNQSQSNKRSIYKAISGNKQVLHF 630
Query: 866 LKDTSRLI 873
+ + R++
Sbjct: 631 YQGSPRMV 638
Score = 47 (21.6 bits), Expect = 3.5e-08, Sum P(3) = 3.5e-08
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 609 QSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVV-DSENGFVEG 667
+SFL ++E A + + ++ V EL +G K++ VV DS +
Sbjct: 827 RSFLMTESDEEFAEIFKQTHIKPTKIASVKKKASKELKKGQPKKENKNVVIDSLDTNGNS 886
Query: 668 GTNEIEEGELLDSHVVSGGEHV 689
T +I + +LL+ S + V
Sbjct: 887 ATEDIFQVDLLNDKKASDIDEV 908
Score = 45 (20.9 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1106 PAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTD 1139
PA+ +D +D N D+D+V K K +
Sbjct: 1062 PAEKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNE 1095
>UNIPROTKB|Q8IYD8 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071821 "FANCM-MHF
complex" evidence=IDA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IMP] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00891
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
Orphanet:84 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
PDB:4DRB PDBsum:4DRB InterPro:IPR010994 SUPFAM:SSF47781
EMBL:DQ140356 EMBL:AK093422 EMBL:BC036056 EMBL:AB046816
IPI:IPI00176581 IPI:IPI00217755 RefSeq:NP_065988.1
UniGene:Hs.509229 PDB:4DAY PDBsum:4DAY ProteinModelPortal:Q8IYD8
SMR:Q8IYD8 IntAct:Q8IYD8 STRING:Q8IYD8 PhosphoSite:Q8IYD8
DMDM:78099254 PaxDb:Q8IYD8 PRIDE:Q8IYD8 DNASU:57697
Ensembl:ENST00000267430 Ensembl:ENST00000556036 GeneID:57697
KEGG:hsa:57697 UCSC:uc001wwc.2 UCSC:uc001wwd.4 CTD:57697
GeneCards:GC14P045605 HGNC:HGNC:23168 MIM:609644 MIM:614087
neXtProt:NX_Q8IYD8 PharmGKB:PA134943156 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 InParanoid:Q8IYD8 KO:K10896
OMA:QMGMRSL OrthoDB:EOG4C5CHK GenomeRNAi:57697 NextBio:64551
ArrayExpress:Q8IYD8 Bgee:Q8IYD8 CleanEx:HS_FANCM
Genevestigator:Q8IYD8 GermOnline:ENSG00000187790
Gene3D:3.40.50.10130 Uniprot:Q8IYD8
Length = 2048
Score = 188 (71.2 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 71/275 (25%), Positives = 119/275 (43%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL + A NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 147
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQ E + G H G A + + +K+VL +T Q+++N L
Sbjct: 148 TQQIEACYQVMGIPQSHMAEMTGST--QASTRKEIWCSKRVLFLTPQVMVNDLSRGACPA 205
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP-VNLKGVSSQV-DC 482
I L++DE H A+ + Y V+ E T+ + + ++A+P ++K V + +
Sbjct: 206 AEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFR---ILALSATPGSDIKAVQQVITNL 262
Query: 483 AIKICNLESKLDSVVCTIKDRKELEKH-VPMPSEVV-VEYDKAASLWSLHEQLKQMEVAV 540
I L S+ + T +++EK VP+ E+ ++ L S L Q V +
Sbjct: 263 LIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLM 322
Query: 541 EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSE 575
+ +K+Q + ARD K + G+ +
Sbjct: 323 R---RDIPNLTKYQIILARDQFRKNPSPNIVGIQQ 354
Score = 133 (51.9 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 34/146 (23%), Positives = 70/146 (47%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + + F +E + +FRDG LV+T V EEGLDI + +++I FD
Sbjct: 503 IRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFD 562
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G +++++ ++ K + H
Sbjct: 563 SQKSPIRLVQRMGRTGRKRQGRIVIILSEGR--EERIYNQSQSNKRSIYKAISSNRQVLH 620
Query: 866 LKDTSRLISVDAVPGTVYQVESTGAV 891
S + D + ++++ T V
Sbjct: 621 FYQRSPRMVPDGINPKLHKMFITHGV 646
Score = 46 (21.3 bits), Expect = 8.0e-07, Sum P(4) = 8.0e-07
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 824 PG-SDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLK 867
PG S + L +++ +S N NS +RKE ++ D S K
Sbjct: 1323 PGYSQFSLPVQKKVMSTPLSKSNTLNSFSKIRKEILKTPDSSKEK 1367
Score = 45 (20.9 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1703 EELLKPGFNSFGL 1715
EELL PG++ F L
Sbjct: 1318 EELLSPGYSQFSL 1330
Score = 44 (20.5 bits), Expect = 2.0e-15, Sum P(4) = 2.0e-15
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 967 AACKKL--HEMGAFTDMLLPDKGSG 989
A+C K H G T + LP +G G
Sbjct: 1793 ASCSKSRPHLAGTHTSLRLPQEGKG 1817
Score = 42 (19.8 bits), Expect = 3.1e-15, Sum P(4) = 3.1e-15
Identities = 25/111 (22%), Positives = 43/111 (38%)
Query: 906 SQLPSDRYSILRPEFIMERHEKPGGPT--EYSC-KLQL---PCNAPFEKLEGPVCSSMRL 959
SQ+P + L F ++ E G + E C L C A +K + ++
Sbjct: 1592 SQIPEQDETYLEDSFCVDEEESCKGQSSEEEVCVDFNLITDDCFANSKKYKTRRAVMLKE 1651
Query: 960 AQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPL-PGTAR 1009
+ C + KKL + +LPD S E+ D+ + + P T +
Sbjct: 1652 MMEQNCAHSKKKLSRI------ILPDDSSEEENNVNDKRESNIAVNPSTVK 1696
Score = 40 (19.1 bits), Expect = 2.0e-15, Sum P(4) = 2.0e-15
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 1542 LIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGC 1575
L+G + + G + + L G+QVE P GC
Sbjct: 1821 LVGGHEITSGLEVISSLRAIHGLQVEVCPLN-GC 1853
Score = 39 (18.8 bits), Expect = 6.3e-15, Sum P(4) = 6.3e-15
Identities = 22/106 (20%), Positives = 37/106 (34%)
Query: 1308 KNLLSPRFEHSXXXXXXXXXILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVES 1367
+++ +P + H +L Y F P + P S I R E
Sbjct: 1300 EDMQNPNYVHLPLSAAKNEELLSPGYSQFSLPVQKKVMSTPLSKSNTLNSFSKI--RKEI 1357
Query: 1368 MLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYL 1413
+ K+K+N + EAL + F E+++ G YL
Sbjct: 1358 LKTPDSSKEKVNL----QRFKEALNSTFDYSEFSLEKSKSSGPMYL 1399
>UNIPROTKB|E2RNF7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071821 "FANCM-MHF complex" evidence=IEA]
[GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA]
[GO:0031297 "replication fork processing" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
KO:K10896 Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 RefSeq:XP_537429.2 Ensembl:ENSCAFT00000022327
GeneID:480307 KEGG:cfa:480307 Uniprot:E2RNF7
Length = 2047
Score = 185 (70.2 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 72/278 (25%), Positives = 121/278 (43%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL + + NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 147
Query: 365 YQQAEVIREQTGYVVGHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
QQ E G H G Q F + W+ +K+VL +T Q+++N L
Sbjct: 148 TQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWR----SKRVLFLTPQVMVNDLSRGAC 203
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP-VNLKGVSSQVD 481
I L++DE H A+ + Y V+ E + T+ + + ++A+P ++K + QV
Sbjct: 204 PAAEIKCLVIDEAHKALGNYAYCQVVRELFKYTNHFR---ILALSATPGSDIKAIQ-QVI 259
Query: 482 CAIKICNLESKL-DSV-VCTIKDRKELEKHVPMPSEVVVEYDKA--ASLWSLHEQLKQME 537
++I +E + DS + + +EK V E + KA L + L Q
Sbjct: 260 TNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRN 319
Query: 538 VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSE 575
+ + + +K+Q + ARD K + G+ +
Sbjct: 320 ILMR---RDIPNLTKYQIILARDQFRKNPSPNIVGIQQ 354
Score = 134 (52.2 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 33/128 (25%), Positives = 64/128 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + M+ F +E + +FR G LV+T V EEGLDI + +++I FD
Sbjct: 503 IRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFD 562
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G T+ ++ N + + R L
Sbjct: 563 AQKSPIRLVQRMGRTGRKRKGRIVVILAEGR-EERTYNQSQSNKRSIYKAISGNRQVLHF 621
Query: 866 LKDTSRLI 873
+ + R++
Sbjct: 622 YQGSPRMV 629
Score = 46 (21.3 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1583 PESVLRSVDFHALEDALKIKFKDRGLLVE 1611
P+S VD + ++ L F D GL VE
Sbjct: 1361 PDSNKGKVDLQSFKETLNSTFVDSGLHVE 1389
>UNIPROTKB|J9P777 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
OMA:QMGMRSL Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 Ensembl:ENSCAFT00000046644 Uniprot:J9P777
Length = 2048
Score = 185 (70.2 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 72/278 (25%), Positives = 121/278 (43%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL + + NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 147
Query: 365 YQQAEVIREQTGYVVGHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
QQ E G H G Q F + W+ +K+VL +T Q+++N L
Sbjct: 148 TQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWR----SKRVLFLTPQVMVNDLSRGAC 203
Query: 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP-VNLKGVSSQVD 481
I L++DE H A+ + Y V+ E + T+ + + ++A+P ++K + QV
Sbjct: 204 PAAEIKCLVIDEAHKALGNYAYCQVVRELFKYTNHFR---ILALSATPGSDIKAIQ-QVI 259
Query: 482 CAIKICNLESKL-DSV-VCTIKDRKELEKHVPMPSEVVVEYDKA--ASLWSLHEQLKQME 537
++I +E + DS + + +EK V E + KA L + L Q
Sbjct: 260 TNLRIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRN 319
Query: 538 VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSE 575
+ + + +K+Q + ARD K + G+ +
Sbjct: 320 ILMR---RDIPNLTKYQIILARDQFRKNPSPNIVGIQQ 354
Score = 134 (52.2 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 33/128 (25%), Positives = 64/128 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + M+ F +E + +FR G LV+T V EEGLDI + +++I FD
Sbjct: 503 IRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFD 562
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G T+ ++ N + + R L
Sbjct: 563 AQKSPIRLVQRMGRTGRKRKGRIVVILAEGR-EERTYNQSQSNKRSIYKAISGNRQVLHF 621
Query: 866 LKDTSRLI 873
+ + R++
Sbjct: 622 YQGSPRMV 629
Score = 46 (21.3 bits), Expect = 1.7e-16, Sum P(3) = 1.7e-16
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1583 PESVLRSVDFHALEDALKIKFKDRGLLVE 1611
P+S VD + ++ L F D GL VE
Sbjct: 1361 PDSNKGKVDLQSFKETLNSTFVDSGLHVE 1389
>CGD|CAL0005976 [details] [associations]
symbol:MPH1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0000725 "recombinational
repair" evidence=IEA] [GO:0060543 "negative regulation of strand
invasion" evidence=IEA] [GO:0070336 "flap-structured DNA binding"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0005976 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 EMBL:AACQ01000084 EMBL:AACQ01000083
KO:K14635 RefSeq:XP_715573.1 RefSeq:XP_715628.1
ProteinModelPortal:Q5A1A0 STRING:Q5A1A0 GeneID:3642769
GeneID:3642817 KEGG:cal:CaO19.10436 KEGG:cal:CaO19.2919
Uniprot:Q5A1A0
Length = 1187
Score = 170 (64.9 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 59/221 (26%), Positives = 109/221 (49%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
+ R YQ +++E+A N + L TG GKT IA ++ N L R +F+ P P
Sbjct: 136 EIRDYQYNIVERAFYDNLLVALPTGLGKTFIASTVM---LNFL-RWFPISKIIFMAPTRP 191
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSI 421
LV QQ + + G ++ +R + E ++++QV T Q++ N L +
Sbjct: 192 LVAQQIKACCS----IAGIPSSKVAILLDKTRRNRAEIWNSRQVFFTTPQVVENDLASGV 247
Query: 422 IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN-LKGVSSQV 480
+ ++I LL++DE H A + Y+ V+ +F + S R + +TA+P + ++GV +
Sbjct: 248 VNPKSIALLVIDEAHRAKGNYSYNNVV-KFINRFSDSYR--ILALTATPASDVEGVQQII 304
Query: 481 DCAIKICNLESKLDSVVCTIKD--RKELEKHVPMPSEVVVE 519
D + I +E + + + ++ RK +E+ PS + E
Sbjct: 305 D-NLNISKVEVRTEQSIDIVRHMKRKTVERKTCYPSSEITE 344
Score = 130 (50.8 bits), Expect = 6.7e-16, Sum P(2) = 6.7e-16
Identities = 44/144 (30%), Positives = 74/144 (51%)
Query: 743 ELPSL-SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNV 801
E PS S ++A + G SQ+++ +E I KF+ G +LVATS+ EEGLDI + ++
Sbjct: 560 ERPSTRSSSENAQMTGM--SQKLQ----KEIIKKFKKGVFNILVATSIGEEGLDIGEVDL 613
Query: 802 VIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERT 861
+I +D + + IQ GR + +LM+ N + F + A E +++ I +
Sbjct: 614 IICYDSTSSPIKNIQRMGRTGRKRDGKVLMLFSSN-EESKFDK-AMGGYEYIQQH-IMKG 670
Query: 862 DLSHLKDTSRLISVDAVPGTVYQV 885
D L+ R+I + P V Q+
Sbjct: 671 DFIQLRPQHRMIPDEYKPEAVKQL 694
>MGI|MGI:2442306 [details] [associations]
symbol:Fancm "Fanconi anemia, complementation group M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=ISO] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=ISO] [GO:0071821 "FANCM-MHF complex" evidence=ISO]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 MGI:MGI:2442306
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 KO:K10896 OMA:QMGMRSL
OrthoDB:EOG4C5CHK Gene3D:3.40.50.10130 EMBL:AK050306 EMBL:AK053715
EMBL:AK084697 EMBL:AK086395 EMBL:AK173211 IPI:IPI00471330
IPI:IPI00654953 IPI:IPI00654989 IPI:IPI00655127 RefSeq:NP_849243.2
UniGene:Mm.374847 ProteinModelPortal:Q8BGE5 SMR:Q8BGE5
STRING:Q8BGE5 PhosphoSite:Q8BGE5 PRIDE:Q8BGE5
Ensembl:ENSMUST00000058889 GeneID:104806 KEGG:mmu:104806
UCSC:uc007nrc.1 UCSC:uc007nrd.1 UCSC:uc007nrf.1 UCSC:uc011ymf.1
GeneTree:ENSGT00640000091530 InParanoid:Q8BGE5 NextBio:357300
Bgee:Q8BGE5 CleanEx:MM_FANCM Genevestigator:Q8BGE5
GermOnline:ENSMUSG00000055884 Uniprot:Q8BGE5
Length = 2021
Score = 182 (69.1 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 82/355 (23%), Positives = 144/355 (40%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQLD+ A NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 80 RDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 135
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQ E G H G A + + +++VL +T Q+++N L +
Sbjct: 136 TQQMEACFHVMGIPQSHMAEMTGST--QAVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPA 193
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP-VNLKGVSSQV-DC 482
+ L++DE H A+ + Y V+ E T+ + + ++A+P ++K V + +
Sbjct: 194 THVKCLVVDEAHKALGNYAYCQVVRELVKYTTHFR---ILALSATPGSDIKAVQQVITNL 250
Query: 483 AIKICNLESKLDSVVCTIKDRKELEKHV-PMPSEV-VVEYDKAASLWSLHEQLKQMEVAV 540
I L S+ + + +EK V P+ E+ ++ L + L V +
Sbjct: 251 LIGKIELRSEESPDILPYSHERRVEKLVVPLGEELGAIQKTYIQILETFASSLIHRNVLM 310
Query: 541 EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600
+ + +K+Q + ARD K + G+ + +G L L L ++G
Sbjct: 311 K---RDIPNLTKYQIILARDQFRKNPSPNIVGIQQGI-IEGEFALCISLYHGYELLQQMG 366
Query: 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDA 655
Y + + RA +L E ++ K+ + LQ + S A
Sbjct: 367 MRSLYFFLSGIMDGTKGMTRARNELSRN--EDFM-KLYTHLQSAFAPASTSDASA 418
Score = 135 (52.6 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 37/146 (25%), Positives = 73/146 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + + F +E + +FRDG LV+T V EEGLDI + +++I FD
Sbjct: 488 IRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFD 547
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + IQ GR RK ++++ G T+ ++ N + + + R L
Sbjct: 548 AQKSPIRLIQRMGRTGRKRQGRIVVILAEGR-EERTYNQSQSNKKNIYKAISGNRQVLRL 606
Query: 866 LKDTSRLISVDAVPGTVYQVESTGAV 891
+ + R++ D + ++++ T V
Sbjct: 607 YQGSPRMVP-DKINPELHKMYITHGV 631
Score = 45 (20.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 823 KPGSDYILMIERGNLSHATF-LRNARNSEETLRKEAIERTDLSHLKDTS 870
K G M L H F + ++S++ ++ RT++ HL S
Sbjct: 1333 KAGGQGFKMALNPRLGHLGFSVEETKSSDQVFVHQSPRRTEVEHLTSES 1381
Score = 39 (18.8 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 1775 CQQQAEGLEYKASRSGNLATVEVYID 1800
C+ +EG K SG+ + ++ D
Sbjct: 1061 CESDSEGHNIKYQNSGSNSCAQIQAD 1086
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 163 (62.4 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
LE +L +FKD+ LL+ A+TH S S + +RLEF+GDAVLD ++ ++LF +
Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAKDAE 64
Query: 1655 GRLTDLRAAAVNNENFARVA 1674
G L+ LRAA VN ++FA++A
Sbjct: 65 GDLSKLRAALVNEKSFAKIA 84
Score = 113 (44.8 bits), Expect = 8.2e-07, Sum P(2) = 8.2e-07
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 1362 MRRVESM--LLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSR 1419
M+ +E + L + KDK + ++ ALT S ++++ ER E LGDA L VV
Sbjct: 1 MKNIEKLERSLTYEFKDK-------NLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGE 53
Query: 1420 FLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
+LF K+ + EG L+++R +V+ + A S L +I
Sbjct: 54 YLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI 93
Score = 78 (32.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 1716 GDCKAPKVLGDIVESIAGAIFLDSGRD--TSVVWQVFQPLLDPMVTPETLPMHPVRELQE 1773
G + P +L D +E+I GAI L++G + ++ ++ + P + + L +LQE
Sbjct: 103 GGREKPSILSDALEAIIGAIHLEAGFEFTKTIALRLIEKNF-PQIDAKILIKDYKTKLQE 161
Query: 1774 RCQQQ-AEGLEYKASRS-G--NLATVEV--YIDGVQVGVAQNPQKKMAQKLAAR 1821
Q + + +Y+ R+ G +L E+ +DG ++ A KK AQ++AA+
Sbjct: 162 ITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAK 215
Score = 56 (24.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 1870 PLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926
P Y VR GP H K+F A+ ++ K G S K+A+ AA + LE L
Sbjct: 171 PQYETVRAFGPDHLKQFEIALMLD--GKELARAIAG----SKKEAQQMAAKIALEKL 221
Score = 46 (21.3 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 1535 LADVVEALIGVYYVEGG 1551
L+D +EA+IG ++E G
Sbjct: 111 LSDALEAIIGAIHLEAG 127
>SGD|S000001441 [details] [associations]
symbol:MPH1 "3'-5' DNA helicase involved in error-free bypass
of DNA lesions" species:4932 "Saccharomyces cerevisiae" [GO:0006281
"DNA repair" evidence=IEA] [GO:0060543 "negative regulation of
strand invasion" evidence=IMP;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IGI] [GO:0070336
"flap-structured DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IMP] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000001441 GO:GO:0005524 GO:GO:0005634 EMBL:BK006942
EMBL:X79743 EMBL:Z38062 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036297 GO:GO:0000725 eggNOG:COG1111
GO:GO:0033567 GO:GO:0043138 GeneTree:ENSGT00640000091530 KO:K14635
OrthoDB:EOG4JHGPV PIR:S48436 RefSeq:NP_012267.1
ProteinModelPortal:P40562 SMR:P40562 DIP:DIP-5016N IntAct:P40562
MINT:MINT-493277 STRING:P40562 PaxDb:P40562 PeptideAtlas:P40562
EnsemblFungi:YIR002C GeneID:854818 KEGG:sce:YIR002C CYGD:YIR002c
HOGENOM:HOG000066122 OMA:KNREEIW NextBio:977660
Genevestigator:P40562 GermOnline:YIR002C GO:GO:0070336
GO:GO:0060543 Uniprot:P40562
Length = 993
Score = 246 (91.7 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 146/607 (24%), Positives = 265/607 (43%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
+ R YQ ++ ++ +NT+ + TG GKT IA ++ + R KK +F P P
Sbjct: 86 EVRDYQYTIVHKSLFQNTLCAIPTGMGKTFIA----STVMLNYFRWTKKAKIIFTAPTRP 141
Query: 363 LVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE--FDTKQVLVMTAQILLNILRHS 420
LV QQ + TG + D R RE + K+V T Q++ N L+
Sbjct: 142 LVAQQIKACLGITGIP-----SDQTAILLDKSRKNREEIWANKRVFFATPQVVENDLKRG 196
Query: 421 IIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN-LKGVSSQ 479
++ + I L++DE H A Y+ V+ +F + R + +TA+P + L+GV
Sbjct: 197 VLDPKDIVCLVIDEAHRATGSSAYTNVV-KFIDRFNSSYR--LLALTATPASDLEGVQEV 253
Query: 480 VDCAIKICNLESKLDS---VVCTIKDRKELEKHVPMPSEV--VVEYDKAASLWSLHEQLK 534
V+ + I +E + + +V +K RK+ + VP+ E+ ++E ++ + +Q
Sbjct: 254 VN-NLDISKIEIRTEESMDIVKYMKKRKKEKIEVPLLLEIEDIIE-QLGMAVKPVLQQAI 311
Query: 535 QMEVAVE-EAAQSSSRRSKWQFMGA-RDAGAKEELR-QVYGVSERTESDGAANLIQKLRA 591
++ + E + +Q ++ ++ Q + E ++ + + + + + G K+
Sbjct: 312 ELGIYEECDPSQINAFKAMQQSQKIIANPTIPEGIKWRNFFILQLLNNVGQMLKRLKIYG 371
Query: 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQL-----DVKFQ-ESYLS--KVVS--LL 641
I C + L N A + ++K Q E+YLS K V L
Sbjct: 372 IRTFFNYFQNKCTEFTTKYNLKKSTNKIAAEFYYHPILKNIKNQCENYLSDPKFVGHGKL 431
Query: 642 QC---ELVEGAVSK-KDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAV 697
QC EL++ + D++V+ F E + +E + +DS V + IG A
Sbjct: 432 QCVRDELMDFFQKRGSDSRVII----FTELRESALEIVKFIDS-VADDQIRPHIFIGQAR 486
Query: 698 A-DG----KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752
A +G K T K + ++ H ++ + ER A K+ +
Sbjct: 487 AKEGFDEVKYTRKHAPKGRKKVERLHRQEQEKFLEAERTKRA-ANDKLERSARRTGSSEE 545
Query: 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVL 812
A + G N Q+M+ +E I F+ G +LV TS+ EEGLDI + +++I +D + +
Sbjct: 546 AQISGMN--QKMQ----KEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPI 599
Query: 813 AYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRL 872
IQ GR + I+++ N S+ F R A TL+ I + + + K + R+
Sbjct: 600 KNIQRMGRTGRKRDGKIVLLFSSNESYK-FER-AMEDYSTLQA-LISKQCIDY-KKSDRI 655
Query: 873 ISVDAVP 879
I D +P
Sbjct: 656 IPEDIIP 662
Score = 37 (18.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 1479 DEDTKDGDSSLFDQEKSVAED 1499
++ T++ SSL +++ V++D
Sbjct: 773 NDSTEEASSSLETEDEEVSDD 793
>UNIPROTKB|Q5E9G8 [details] [associations]
symbol:LGP2 "Putative uncharacterized protein LGP2"
species:9913 "Bos taurus" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0045824 "negative
regulation of innate immune response" evidence=IEA] [GO:0039536
"negative regulation of RIG-I signaling pathway" evidence=IEA]
[GO:0039534 "negative regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:0032481 "positive regulation of type I interferon
production" evidence=IEA] [GO:0032480 "negative regulation of type
I interferon production" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 CTD:79132 HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW
GO:GO:0032481 EMBL:DAAA02049179 EMBL:DAAA02049177 EMBL:DAAA02049178
EMBL:BT020952 IPI:IPI00693785 RefSeq:NP_001015545.1
UniGene:Bt.27564 Ensembl:ENSBTAT00000065738 GeneID:508378
KEGG:bta:508378 NextBio:20868490 Uniprot:Q5E9G8
Length = 680
Score = 225 (84.3 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 70/181 (38%), Positives = 95/181 (52%)
Query: 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELP 745
+H + + A + G PK++ L IL + + D R IIF +A L + P
Sbjct: 333 DHKNELARLATS-GPENPKLEVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQP 391
Query: 746 SLSFV--KSASLIGH-NNSQEMRTFQM-----QETIAKFRDGRVTLLVATSVAEEGLDIR 797
L V + L G NNSQ+ + QM QE I KFR G + LLVATSVAEEGLDI
Sbjct: 392 GLQTVDIRPQVLTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIP 451
Query: 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEA 857
QCNVV+R+ L ++ +Q+RGRAR S Y + +G+ L N + ETL K A
Sbjct: 452 QCNVVVRYGLLTNEISMVQARGRARASQSVYSFVAAQGSRELQRELTN--EALETLMKRA 509
Query: 858 I 858
+
Sbjct: 510 V 510
Score = 201 (75.8 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 108/437 (24%), Positives = 196/437 (44%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + KN I +L TG+GKT A + R L+ + + V LV +V
Sbjct: 2 ELRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAR---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIRE--QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL-- 417
LV Q E + + + G+MG +R +L+ TA++L L
Sbjct: 58 HLVTQHCEEFSRMLERRWTITTLSGDMGPRAGFGHVARRH----DLLICTAELLQKALAS 113
Query: 418 --RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP--SVFGMTASPVNL 473
+++ A +LL++DECHH K Y++++S++ + RP V G+TASP
Sbjct: 114 PEEEEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASP-GT 172
Query: 474 KGVSS---QVDCAIKICNLESKLDS-VVCTIKDRK-ELEKHVPMPSEVVVEYDKAAS--- 525
GVS+ +D +++C + LD+ + + KD +L++H P + +YD
Sbjct: 173 GGVSTLEGAIDHVLQLC---ANLDTWCIMSPKDHSPQLQEHSHQPCK---QYDLCHRRTQ 226
Query: 526 ----------LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSE 575
+ +H+ L+ ++ + Q+ ++ A +AG E+ +VY +
Sbjct: 227 DPFGDMLKKLMDQIHDHLEMPKLRRDFGTQTYEQQVVELSQDAAEAGLLEQ--RVYALHL 284
Query: 576 RTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQL--DVKFQESY 633
R +D A + +RA++ AL L + Y ++ T + + ER L D K + +
Sbjct: 285 RRYND-ALLIHDTVRAVD-ALNTLRDF--YNRERTTKTQILHAERWLLALFDDHKNELAR 340
Query: 634 LSKV-VSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692
L+ + E++E A+ ++ + DS G + T + LL G + VD+
Sbjct: 341 LATSGPENPKLEVLE-AILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIR 399
Query: 693 IGAAVADGKVTPKVQSL 709
G + K Q +
Sbjct: 400 PQVLTGAGNNSQKTQMI 416
>UNIPROTKB|E2QXT4 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 OMA:ELRPYQW EMBL:AAEX03006454
Ensembl:ENSCAFT00000024900 Uniprot:E2QXT4
Length = 680
Score = 218 (81.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 63/161 (39%), Positives = 88/161 (54%)
Query: 704 PKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV--KSASLIGHNN 760
PK++ L +IL + + H++ R IIF + + L + P L V ++ LIG N
Sbjct: 351 PKLEMLEQILREQFGHSDSPRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLIGAGN 410
Query: 761 SQE---MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS 817
S + M QE I KFR G + LLVATSVAEEGLDI QCNVV+R+ L ++ +Q+
Sbjct: 411 SSQNTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNEISMVQA 470
Query: 818 RGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAI 858
RGRAR S Y + +G+ L N ETL + A+
Sbjct: 471 RGRARAGRSIYSFVATQGSRELRRELIN--EVLETLMERAV 509
Score = 207 (77.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 110/422 (26%), Positives = 190/422 (45%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + KN I +L TGAGKT A + + L+ ++ + V LV +V
Sbjct: 4 ELRPYQWEVIMPALEGKNIIVWLPTGAGKTRAAAYVAK---RHLETVDQAKVVV-LVNRV 59
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL-- 417
LV Q E G + + G+MG R D +++ TA++L L
Sbjct: 60 HLVTQHCEEFSRMLGKRWAIITLSGDMGPRAGFGHL-ARSHD---LIICTAELLQMALTS 115
Query: 418 --RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP--SVFGMTASPVNL 473
+++ A +LL++DECHH K Y+L++S + + RP V G+TASP
Sbjct: 116 PEEEEHVELNAFSLLVVDECHHTHKDTVYNLILSRYLEHKLQRTRPLPQVLGLTASPGT- 174
Query: 474 KGVSSQVDCAIK-ICNLESKLDS--VVCTIKDRKELEKHVPMPSEVVV-----EYDKAAS 525
G +S +D AI I L + LD+ ++ R +L++H P + D
Sbjct: 175 -GGASTLDGAIDHILQLCANLDTWHIMSPENHRPQLQEHSAQPCKQYSLCHRRSQDPFGD 233
Query: 526 LWS-----LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD 580
+ +H +L+ + + Q+ ++ A AG ++ R+VY + R +D
Sbjct: 234 MLKKLMDRIHNRLEMPALNRDFGTQTYEQQVVELSQDAAQAGLQQ--RRVYALHLRRYND 291
Query: 581 GAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQL--DVKFQESYLS-KV 637
A + +RA++ AL LG + Y ++ T + ER L D K + ++L+ +
Sbjct: 292 -ALLIHDTVRAVD-ALKSLGDF--YDRERATKTQVLQAERWLLALFDDYKNELAHLATQT 347
Query: 638 VSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDV----II 693
+ E++E + ++ DS G + T + LL G + VD+ +I
Sbjct: 348 PENPKLEMLE-QILREQFGHSDSPRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLI 406
Query: 694 GA 695
GA
Sbjct: 407 GA 408
>UNIPROTKB|I3LAY7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006259 "DNA
metabolic process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000030082 Uniprot:I3LAY7
Length = 2028
Score = 158 (60.7 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 46/142 (32%), Positives = 65/142 (45%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL++ A NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 156
Query: 365 YQQAEVIREQTGYVVGHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
QQ E G H G Q F + W D+K+VL +T Q+++N L
Sbjct: 157 TQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIW----DSKRVLFLTPQVMVNDLSRGAC 212
Query: 423 KMEAINLLILDECHHAVKKHPY 444
I L++DE H A+ + Y
Sbjct: 213 PAAEIKCLVIDEAHRALGNYAY 234
Score = 131 (51.2 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 32/128 (25%), Positives = 64/128 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + M+ F +E + +FR G LV+T V EEGLDI + +++I FD
Sbjct: 486 IRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFD 545
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G T+ ++ N + + + L
Sbjct: 546 AQKSPIRLVQRMGRTGRKRQGRIVVILAEGR-EERTYNQSQSNKRSIYKAISGNKQVLHF 604
Query: 866 LKDTSRLI 873
+ + R++
Sbjct: 605 YQGSPRMV 612
Score = 47 (21.6 bits), Expect = 7.5e-05, Sum P(3) = 7.5e-05
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 609 QSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVV-DSENGFVEG 667
+SFL ++E A + + ++ V EL +G K++ VV DS +
Sbjct: 801 RSFLMTESDEEFAEIFKQTHIKPTKIASVKKKASKELKKGQPKKENKNVVIDSLDTNGNS 860
Query: 668 GTNEIEEGELLDSHVVSGGEHV 689
T +I + +LL+ S + V
Sbjct: 861 ATEDIFQVDLLNDKKASDIDEV 882
Score = 45 (20.9 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 1106 PAKAYLFVPVVSDKSVDPMNELDWDLVEKITKTD 1139
PA+ +D +D N D+D+V K K +
Sbjct: 1036 PAEKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNE 1069
>UNIPROTKB|J9NY43 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:AAEX03005706
Ensembl:ENSCAFT00000048988 Uniprot:J9NY43
Length = 2022
Score = 149 (57.5 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 44/142 (30%), Positives = 64/142 (45%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL + + NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 147
Query: 365 YQQAEVIREQTGYVVGHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
QQ E G H G Q F + W+ +K+VL +T Q+++N L
Sbjct: 148 TQQIEACYRVMGIPQSHMAEMTGTTQAFTRKEIWR----SKRVLFLTPQVMVNDLSRGAC 203
Query: 423 KMEAINLLILDECHHAVKKHPY 444
I L++DE H A+ + Y
Sbjct: 204 PAAEIKCLVIDEAHKALGNYAY 225
Score = 134 (52.2 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 33/128 (25%), Positives = 64/128 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + M+ F +E + +FR G LV+T V EEGLDI + +++I FD
Sbjct: 477 IRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFD 536
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G T+ ++ N + + R L
Sbjct: 537 AQKSPIRLVQRMGRTGRKRKGRIVVILAEGR-EERTYNQSQSNKRSIYKAISGNRQVLHF 595
Query: 866 LKDTSRLI 873
+ + R++
Sbjct: 596 YQGSPRMV 603
Score = 46 (21.3 bits), Expect = 9.2e-13, Sum P(3) = 9.2e-13
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1583 PESVLRSVDFHALEDALKIKFKDRGLLVE 1611
P+S VD + ++ L F D GL VE
Sbjct: 1335 PDSNKGKVDLQSFKETLNSTFVDSGLHVE 1363
>UNIPROTKB|B2RTQ9 [details] [associations]
symbol:FANCM "FANCM protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 UniGene:Hs.509229
HGNC:HGNC:23168 HOVERGEN:HBG081520 Gene3D:3.40.50.10130
EMBL:AL121809 EMBL:BC140776 EMBL:BC144511 IPI:IPI01014004
SMR:B2RTQ9 STRING:B2RTQ9 Ensembl:ENST00000542564 UCSC:uc010anf.3
Uniprot:B2RTQ9
Length = 2022
Score = 147 (56.8 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 43/140 (30%), Positives = 63/140 (45%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL + A NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 147
Query: 365 YQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424
QQ E + G H G A + + +K+VL +T Q+++N L
Sbjct: 148 TQQIEACYQVMGIPQSHMAEMTGST--QASTRKEIWCSKRVLFLTPQVMVNDLSRGACPA 205
Query: 425 EAINLLILDECHHAVKKHPY 444
I L++DE H A+ + Y
Sbjct: 206 AEIKCLVIDEAHKALGNYAY 225
Score = 133 (51.9 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 34/146 (23%), Positives = 70/146 (47%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
++ + +GH + + + F +E + +FRDG LV+T V EEGLDI + +++I FD
Sbjct: 477 IRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFD 536
Query: 807 LAKTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSH 865
K+ + +Q GR RK ++++ G +++++ ++ K + H
Sbjct: 537 SQKSPIRLVQRMGRTGRKRQGRIVIILSEGR--EERIYNQSQSNKRSIYKAISSNRQVLH 594
Query: 866 LKDTSRLISVDAVPGTVYQVESTGAV 891
S + D + ++++ T V
Sbjct: 595 FYQRSPRMVPDGINPKLHKMFITHGV 620
Score = 45 (20.9 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1703 EELLKPGFNSFGL 1715
EELL PG++ F L
Sbjct: 1292 EELLSPGYSQFSL 1304
Score = 44 (20.5 bits), Expect = 2.9e-11, Sum P(4) = 2.9e-11
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 967 AACKKL--HEMGAFTDMLLPDKGSG 989
A+C K H G T + LP +G G
Sbjct: 1767 ASCSKSRPHLAGTHTSLRLPQEGKG 1791
Score = 42 (19.8 bits), Expect = 4.6e-11, Sum P(4) = 4.6e-11
Identities = 25/111 (22%), Positives = 43/111 (38%)
Query: 906 SQLPSDRYSILRPEFIMERHEKPGGPT--EYSC-KLQL---PCNAPFEKLEGPVCSSMRL 959
SQ+P + L F ++ E G + E C L C A +K + ++
Sbjct: 1566 SQIPEQDETYLEDSFCVDEEESCKGQSSEEEVCVDFNLITDDCFANSKKYKTRRAVMLKE 1625
Query: 960 AQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPL-PGTAR 1009
+ C + KKL + +LPD S E+ D+ + + P T +
Sbjct: 1626 MMEQNCAHSKKKLSRI------ILPDDSSEEENNVNDKRESNIAVNPSTVK 1670
Score = 40 (19.1 bits), Expect = 2.9e-11, Sum P(4) = 2.9e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 1542 LIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGC 1575
L+G + + G + + L G+QVE P GC
Sbjct: 1795 LVGGHEITSGLEVISSLRAIHGLQVEVCPLN-GC 1827
Score = 39 (18.8 bits), Expect = 9.2e-11, Sum P(4) = 9.2e-11
Identities = 22/106 (20%), Positives = 37/106 (34%)
Query: 1308 KNLLSPRFEHSXXXXXXXXXILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVES 1367
+++ +P + H +L Y F P + P S I R E
Sbjct: 1274 EDMQNPNYVHLPLSAAKNEELLSPGYSQFSLPVQKKVMSTPLSKSNTLNSFSKI--RKEI 1331
Query: 1368 MLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYL 1413
+ K+K+N + EAL + F E+++ G YL
Sbjct: 1332 LKTPDSSKEKVNL----QRFKEALNSTFDYSEFSLEKSKSSGPMYL 1373
>UNIPROTKB|G3MWK8 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:DAAA02049179
EMBL:DAAA02049177 EMBL:DAAA02049178 Ensembl:ENSBTAT00000065634
Uniprot:G3MWK8
Length = 480
Score = 201 (75.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 108/437 (24%), Positives = 196/437 (44%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ RPYQ +V+ A + KN I +L TG+GKT A + R L+ + + V LV +V
Sbjct: 2 ELRPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVAR---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIRE--QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL-- 417
LV Q E + + + G+MG +R +L+ TA++L L
Sbjct: 58 HLVTQHCEEFSRMLERRWTITTLSGDMGPRAGFGHVARRH----DLLICTAELLQKALAS 113
Query: 418 --RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP--SVFGMTASPVNL 473
+++ A +LL++DECHH K Y++++S++ + RP V G+TASP
Sbjct: 114 PEEEEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQRTRPLPQVLGLTASP-GT 172
Query: 474 KGVSS---QVDCAIKICNLESKLDS-VVCTIKDRK-ELEKHVPMPSEVVVEYDKAAS--- 525
GVS+ +D +++C + LD+ + + KD +L++H P + +YD
Sbjct: 173 GGVSTLEGAIDHVLQLC---ANLDTWCIMSPKDHSPQLQEHSHQPCK---QYDLCHRRTQ 226
Query: 526 ----------LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSE 575
+ +H+ L+ ++ + Q+ ++ A +AG E+ +VY +
Sbjct: 227 DPFGDMLKKLMDQIHDHLEMPKLRRDFGTQTYEQQVVELSQDAAEAGLLEQ--RVYALHL 284
Query: 576 RTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQL--DVKFQESY 633
R +D A + +RA++ AL L + Y ++ T + + ER L D K + +
Sbjct: 285 RRYND-ALLIHDTVRAVD-ALNTLRDF--YNRERTTKTQILHAERWLLALFDDHKNELAR 340
Query: 634 LSKV-VSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692
L+ + E++E A+ ++ + DS G + T + LL G + VD+
Sbjct: 341 LATSGPENPKLEVLE-AILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQPGLQTVDIR 399
Query: 693 IGAAVADGKVTPKVQSL 709
G + K Q +
Sbjct: 400 PQVLTGAGNNSQKTQMI 416
Score = 174 (66.3 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 56/144 (38%), Positives = 74/144 (51%)
Query: 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDF-RAIIFVERVVAALVLPKVFAELP 745
+H + + A + G PK++ L IL + + D R IIF +A L + P
Sbjct: 333 DHKNELARLATS-GPENPKLEVLEAILQRQFRSPDSPRGIIFTRTRQSAHSLLLWLQQQP 391
Query: 746 SLSFV--KSASLIGH-NNSQEMRTFQM-----QETIAKFRDGRVTLLVATSVAEEGLDIR 797
L V + L G NNSQ+ + QM QE I KFR G + LLVATSVAEEGLDI
Sbjct: 392 GLQTVDIRPQVLTGAGNNSQKTQMIQMTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIP 451
Query: 798 QCNVVIRFDLAKTVLAYIQSRGRA 821
QCNVV+R+ L + + RA
Sbjct: 452 QCNVVVRYGLLTLTMCNMLRAWRA 475
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 164 (62.8 bits), Expect = 4.1e-12, Sum P(5) = 4.1e-12
Identities = 47/145 (32%), Positives = 69/145 (47%)
Query: 1533 KTLADVVEALIGVYYVEGGKDAANHL-MKWIGIQVESDPEEVGCPSRPACVPESVLRSVD 1591
K ADV+EALIG Y++ G A L + WI D + P E++ +
Sbjct: 1161 KPQADVIEALIGAVYIDRGFFEAYKLTVCWI-----FDEPDAEYPIYNTKFEETLAHQ-E 1214
Query: 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTN 1651
A D + + LL EA+ S YQRLE+VGDAVLD ++ L+ ++
Sbjct: 1215 IRAFLDGIGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPL 1274
Query: 1652 LPPGRLTDLRAAAVNNENFARVAVK 1676
G+LTD R+ V N N + ++ K
Sbjct: 1275 AQEGQLTDYRSRLVRNSNLSSISRK 1299
Score = 94 (38.1 bits), Expect = 4.1e-12, Sum P(5) = 4.1e-12
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
+R E LGD+ LK V + +LF KYP+ EG L++ R N L + GL+ ++
Sbjct: 1095 QRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILR 1152
Score = 57 (25.1 bits), Expect = 4.1e-12, Sum P(5) = 4.1e-12
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 1692 RQIRDF-VKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS 1739
R +R+ + + +L P S G+ D K LGD +ES G F+D+
Sbjct: 1286 RLVRNSNLSSISRKLCLPPTVSKGIRDTLPIKKLGDYLESFIGCCFVDT 1334
Score = 51 (23.0 bits), Expect = 4.1e-12, Sum P(5) = 4.1e-12
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 148 NGVHRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQ 193
N + +N NN++E I D D +D S + + + Q + Q
Sbjct: 122 NNNNNNNNNNNNEIIIINDSDDDDNNSNNIQQQQQQQQQQQQQQQQ 167
Score = 44 (20.5 bits), Expect = 4.1e-12, Sum P(5) = 4.1e-12
Identities = 21/108 (19%), Positives = 42/108 (38%)
Query: 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437
V H C +D+W + FD + + + S + INL+ + +
Sbjct: 950 VCSHACARTNEDYWRL-KCILFFDENDQVEKPLD--WKVYQQSNPSFKEINLVTFLKYYK 1006
Query: 438 AVKKHPYS---LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDC 482
+K P + L +++F H+ +K F + + +S+V C
Sbjct: 1007 HFQKDPLTVRVLGITDFIHSYAKVAILPFFSEMEWSLRVAHFNSKVTC 1054
Score = 37 (18.1 bits), Expect = 8.0e-11, Sum P(4) = 8.0e-11
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 717 QHTEDFRAIIFV 728
+H +DF++I+ V
Sbjct: 35 EHNKDFKSIVIV 46
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(5) = 1.3e-06
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 842 FLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAV 878
F + + SE L + + T HL D S+ + ++ +
Sbjct: 1114 FFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEI 1150
>ASPGD|ASPL0000062874 [details] [associations]
symbol:AN10063 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR003903 SMART:SM00726 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 HOGENOM:HOG000076770
EnsemblFungi:CADANIAT00002426 OMA:YNTIVAT Uniprot:C8VUA7
Length = 971
Score = 151 (58.2 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 59/200 (29%), Positives = 95/200 (47%)
Query: 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362
+ R YQ ++ ++ N + L TG GKT IA ++ N L R K +F+ P P
Sbjct: 159 KTRDYQFNITQKGLFYNLLVALPTGLGKTFIAATIM---LNWL-RWTKSAQIIFVAPTKP 214
Query: 363 LVYQQ-------AEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLN 415
LV QQ A + R QT + G G A+ W+ +K+V MT Q L N
Sbjct: 215 LVAQQISACLRIAGIPRSQTTMLTGE--APPGIR---AEEWK----SKRVFFMTPQTLTN 265
Query: 416 ILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN-LK 474
L+ I + I LL++DE H A + Y V+ +F ++ R V +TA+P + ++
Sbjct: 266 DLKSGIADPKRIVLLVVDEAHRATGGYAYVEVV-KFLRRFNQSFR--VLALTATPGSTVE 322
Query: 475 GVSSQVDCAIKICNLESKLD 494
V + +D + I +E + +
Sbjct: 323 SVQAVID-GLDIARVEIRTE 341
Score = 120 (47.3 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 37/135 (27%), Positives = 70/135 (51%)
Query: 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA 808
FV +S G S+ M + I KF+ G +VATS+ EEGLDI + ++++ +D +
Sbjct: 563 FVGQSSAKG---SEGMGQKTQLDIIQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSS 619
Query: 809 KTVLAYIQSRGRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLK 867
+ + +Q GR RK + +L++ +G +L+ A+++ E +++ + +
Sbjct: 620 ASPIRMLQRMGRTGRKRAGNIVLLLMQGK-EEENYLK-AKDNYEKMQQLIASGSQFTFHD 677
Query: 868 DTS-RLI--SVDAVP 879
D S R+I + VP
Sbjct: 678 DRSPRIIPRGIKPVP 692
Score = 40 (19.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 1200 KASGLVPDREAMQIHNAD-MPTG 1221
K G VP + A Q H D + TG
Sbjct: 713 KRKGRVPKKPAKQFHMPDNVETG 735
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 493 LDSVVCTIKDRKELEKH 509
++ V+ T +KELE+H
Sbjct: 775 INDVLLTPAQQKELEQH 791
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 1736 FLDSGRDTSVVWQVFQPLLDPMV 1758
F DS + + V + ++P++ P V
Sbjct: 540 FRDSAEEVTRVLKRYEPMIRPHV 562
>FB|FBgn0038889 [details] [associations]
symbol:CG7922 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0006200 GO:GO:0016887 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10896
GeneTree:ENSGT00640000091530 RefSeq:NP_650971.2
ProteinModelPortal:Q9VDA0 SMR:Q9VDA0 IntAct:Q9VDA0
MINT:MINT-4080825 EnsemblMetazoa:FBtr0084109 GeneID:42543
KEGG:dme:Dmel_CG7922 UCSC:CG7922-RA FlyBase:FBgn0038889
InParanoid:Q9VDA0 OMA:HRAKGRY OrthoDB:EOG451C5Q PhylomeDB:Q9VDA0
GenomeRNAi:42543 NextBio:829338 ArrayExpress:Q9VDA0 Bgee:Q9VDA0
Uniprot:Q9VDA0
Length = 1489
Score = 153 (58.9 bits), Expect = 5.5e-12, Sum P(3) = 5.5e-12
Identities = 45/178 (25%), Positives = 91/178 (51%)
Query: 705 KVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAE-LPSLS---FVKSASLIGHN 759
K + L ++L++ +Q D RAI+F E + +++ ++ + P L FV S +G +
Sbjct: 415 KYEKLRQVLVQHFQANPDSRAIVFCEYRESVMLIHRLLLQHRPVLRPRCFVGQGSTVGAS 474
Query: 760 NSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKT-VLAYIQSR 818
+ + Q + + FR G +LVATS+ EEGLD+ + +++ FD+ T +IQ
Sbjct: 475 YALTQK--QQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRI 532
Query: 819 GRA-RKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERT--DLSHLKDTSRLI 873
GR RK + ++++ G L++ +++ + K+ + + LS + R++
Sbjct: 533 GRTGRKKNGEVVMLVTEGREQQV--LKDVLANKDQINKKLLNSSVVKLSLYEQNPRMV 588
Score = 116 (45.9 bits), Expect = 5.5e-12, Sum P(3) = 5.5e-12
Identities = 51/200 (25%), Positives = 88/200 (44%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQ +++ A KNT+ L TG GKT IA +++ + R K VF+ P PLV
Sbjct: 59 RSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNF----YRWYPKGKIVFMAPTRPLV 114
Query: 365 YQQAEVIR-------EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
QQ + E T + G + W ++R F T QV+ +L
Sbjct: 115 SQQIHASQKIMPFPSEDTVQLTGQLPRPKRAELWASKRVF--FATPQVVHSD---MLEAD 169
Query: 418 RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVS 477
+I L+++DE H A ++ Y+ V ++ ++ R + ++A+P
Sbjct: 170 GECSFPFGSIKLIVVDEAHRAKGRYAYTQV-ADCLMARNRYFR--MLALSATPGRTMEDV 226
Query: 478 SQVDCAIKICNLESKLDSVV 497
+ V + I NL+ + D+ +
Sbjct: 227 AAVCRNLYISNLQVRWDTSI 246
Score = 48 (22.0 bits), Expect = 5.5e-12, Sum P(3) = 5.5e-12
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 1051 NNGISKDPFLTQVSDFAVLFSSELDAELASLKNFHVRLMSIV--LDVDVEPYTTPWD 1105
++G S + + S+ + E E+ S N + SIV LD+D++ + P D
Sbjct: 994 SSGESNHCAVNKNSEIYPMSIDETKVEVKSSLNLKMHAESIVEDLDIDLDDFLEPMD 1050
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 144 (55.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 44/129 (34%), Positives = 68/129 (52%)
Query: 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSY 1649
++ L+ L + FK++ LLVEA+TH S Y+RLEF+GDAVL+ +I L+ +
Sbjct: 1 MELEELQSLLGVYFKNKDLLVEALTHPSVEKC--PSYERLEFLGDAVLNLVIASMLYDLF 58
Query: 1650 TNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDF---VKEVLEELL 1706
P GRL+ ++A + A +A + L ++R SS RD ++ VLE L+
Sbjct: 59 PGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLEALV 118
Query: 1707 KPGFNSFGL 1715
F GL
Sbjct: 119 GAIFLDAGL 127
Score = 106 (42.4 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
++EALT S ++ YER E LGDA L V++ L+ +P EG+L+ + ++ L
Sbjct: 20 LVEALTHPSVEKCPSYERLEFLGDAVLNLVIASMLYDLFPGDPEGRLSHRQSALICKNTL 79
Query: 1447 YQYALSKGLQSYIQ 1460
A L YI+
Sbjct: 80 AMLARQMNLGDYIR 93
Score = 84 (34.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 1724 LGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLE 1783
L +++E++ GAIFLD+G +T V + + V +++ +P LQE Q A+G++
Sbjct: 110 LENVLEALVGAIFLDAGLET-VTCFIKKRWYGLAVQSDSIEPNPKSTLQELLQ--AKGMK 166
Query: 1784 ---YKA-SRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
Y +RSG + +E+ +DG + A KK+ ++ AAR
Sbjct: 167 PPIYNVINRSGPAHLPIFEIEIRVDGKKRR-ATGKSKKLGEENAAR 211
Score = 70 (29.7 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKA 1914
+ TL ++ + P+Y + GPAH F +RV+ G G+ S K
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRVD----GKKRRATGK---SKKLG 205
Query: 1915 KDSAAVLLLELL 1926
+++AA ++LE L
Sbjct: 206 EENAARMMLEEL 217
Score = 69 (29.3 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 1532 SKTLADVVEALIGVYYVEGGKDAANHLMK--WIGIQVESDPEE 1572
+ L +V+EAL+G +++ G + +K W G+ V+SD E
Sbjct: 107 TSNLENVLEALVGAIFLDAGLETVTCFIKKRWYGLAVQSDSIE 149
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 131 (51.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHAS----RPSSGVSCYQRLEFVGDAVLDHLITKHLFF 1647
F ++ + I F D LL++A TH+S +RLEF+GDAVL+ ++++LF
Sbjct: 19 FKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQ 78
Query: 1648 SYTNLPPGRLTDLRAAAVNNENFARVA 1674
Y + G LT LRAA V + R A
Sbjct: 79 KYPTMSEGELTKLRAAIVCEPSLVRFA 105
Score = 111 (44.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450
ER E LGDA L+ VS++LF KYP EG+LT++R +V L ++A
Sbjct: 58 ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFA 105
Score = 101 (40.6 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 33/113 (29%), Positives = 54/113 (47%)
Query: 1716 GDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLP--MHPVRELQE 1773
G + P +L D+ E+ GA++LD G +T VW + ++ P + M +LQE
Sbjct: 124 GGRERPALLADVFEAFIGALYLDQGLET--VWGFLKEIVYPKINEGAFSHVMDYKSQLQE 181
Query: 1774 RCQQQAEG-LEYKA-SRSG---NLATVE-VYIDGVQVGVAQNPQKKMAQKLAA 1820
Q+ G +EY+ G N V V ++ V +G+ KK A++ AA
Sbjct: 182 LIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGLGSGKSKKEAEQQAA 234
Score = 55 (24.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1872 YRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928
Y+ ++E GPAH + F V +N G +G S K+A+ AA L+ L +
Sbjct: 193 YQILQEKGPAHNREFVSRVTLNNVALG-----LGSGK-SKKEAEQQAAAEALKKLKE 243
Score = 51 (23.0 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWI 1562
LADV EA IG Y++ G + +K I
Sbjct: 132 LADVFEAFIGALYLDQGLETVWGFLKEI 159
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 141 (54.7 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 37/97 (38%), Positives = 52/97 (53%)
Query: 1594 ALEDALKIKFKDRGLLVEAITHAS----RPSSGVSCYQRLEFVGDAVLDHLITKHLFFSY 1649
+LE L F + +L+ AITH S P G+ +RLEF+GDAVL+ I+ +LF ++
Sbjct: 8 SLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTF 67
Query: 1650 TNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1686
G LT LR+ V E+ +A K L LR G
Sbjct: 68 PQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLG 104
Score = 120 (47.3 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
ER E LGDA L+ +S +LF +PQK EG LT++R ++V LY+ A L +++
Sbjct: 45 ERLEFLGDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLR 102
Score = 83 (34.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 33/128 (25%), Positives = 57/128 (44%)
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVT 1759
L++ L+ G F G + L + VE++ GA++ D G + S + +++ L P
Sbjct: 97 LDKFLRLGKGEFKAGGNQRMSNLANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKPE-N 155
Query: 1760 PETLPMHPVRELQERCQQQAEG-LEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKK 1813
E LP LQE Q++ L Y+ G + T V I+ + + KK
Sbjct: 156 LEQLPKDEKTTLQELLQKEKNNVLRYEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKK 215
Query: 1814 MAQKLAAR 1821
A++ AA+
Sbjct: 216 EAEQEAAK 223
Score = 58 (25.5 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 24/72 (33%), Positives = 33/72 (45%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKA 1914
+ TL ++ + + Y + E GP H K FT V +N DK G S K+A
Sbjct: 164 KTTLQELLQKEKNNVLRYEILLEEGPPHQKIFTAGVIIN--DKLIA---TGRGK-SKKEA 217
Query: 1915 KDSAAVLLLELL 1926
+ AA LELL
Sbjct: 218 EQEAAKKALELL 229
Score = 50 (22.7 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 1535 LADVVEALIGVYYVEGGKDAA 1555
LA+ VEA+IG Y + G +AA
Sbjct: 119 LANAVEAVIGAVYFDCGIEAA 139
>UNIPROTKB|C9JG98 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0032481 "positive regulation of type
I interferon production" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0045824
"negative regulation of innate immune response" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR006935 Pfam:PF04851 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0051607 GO:GO:0016787 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039536
GO:GO:0045824 GO:GO:1900245 GO:GO:1900246 HGNC:HGNC:29517
HOGENOM:HOG000230992 ChiTaRS:DHX58 GO:GO:0032481 EMBL:AC105024
IPI:IPI00792703 ProteinModelPortal:C9JG98 SMR:C9JG98 STRING:C9JG98
Ensembl:ENST00000413196 ArrayExpress:C9JG98 Bgee:C9JG98
Uniprot:C9JG98
Length = 302
Score = 174 (66.3 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 66/226 (29%), Positives = 109/226 (48%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ R YQ +V+ A + KN I +L TGAGKT A + + L+ + + V LV +V
Sbjct: 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQ--DFWDAQRWQREFDTKQVLVMTAQILLNIL 417
LV Q E R + V G+MG F R +L+ TA++L L
Sbjct: 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH------DLLICTAELLQMAL 111
Query: 418 ----RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP--SVFGMTASPV 471
+++ +L+++DECHH K Y+++MS++ + +P V G+TASP
Sbjct: 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQPLPQVLGLTASPG 171
Query: 472 NLKGVSSQVDCAIK-ICNLESKLDSVVCTIKDRK---ELEKHVPMP 513
G +S++D AI + L + LD+ C + + +L++H P
Sbjct: 172 T--GGASKLDGAINHVLQLCANLDTW-CIMSPQNCCPQLQEHSQQP 214
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 114 (45.2 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 30/104 (28%), Positives = 52/104 (50%)
Query: 1587 LRSVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLF 1646
+ + + L+ L F + LL +A+TH S S +RLEF+GD++L ++I L+
Sbjct: 1 MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKH---NERLEFLGDSILSYVIANALY 57
Query: 1647 FSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL 1690
+ + G ++ +RA V A +A + +L LR G L
Sbjct: 58 HRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGEL 101
Score = 105 (42.0 bits), Expect = 2.2e-08, Sum P(3) = 2.2e-08
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 1373 QLKDKINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
+L+ K+ Y ++L+ ALT S ER E LGD+ L +V++ L+ ++P+ EG
Sbjct: 8 RLQRKLGYTFNHQELLQQALTHRSASSKH-NERLEFLGDSILSYVIANALYHRFPRVDEG 66
Query: 1432 QLTRMRQQMVSNLVLYQYA 1450
++RMR +V L + A
Sbjct: 67 DMSRMRATLVRGNTLAELA 85
Score = 79 (32.9 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 24/77 (31%), Positives = 35/77 (45%)
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVT 1759
L E L+ G G + +L D VE++ G +FLDS T ++ +Q LD ++
Sbjct: 90 LGECLRLGPGELKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDE-IS 148
Query: 1760 PETLPMHPVRELQERCQ 1776
P P LQE Q
Sbjct: 149 PGDKQKDPKTRLQEYLQ 165
Score = 64 (27.6 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 1865 RNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLE 1924
R+ P+P Y V+ G AH + FT +V+ G ++ VG S +KA+ +AA L+
Sbjct: 167 RHLPLPTYLVVQVRGEAHDQEFTIHCQVS----GLSEPVVGTGS-SRRKAEQAAAEQALK 221
Query: 1925 LL 1926
L
Sbjct: 222 KL 223
Score = 46 (21.3 bits), Expect = 4.3e-05, Sum P(3) = 4.3e-05
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHL-MKW 1561
LAD VEALIG +++ L + W
Sbjct: 112 LADTVEALIGGVFLDSDIQTVEKLILNW 139
>ZFIN|ZDB-GENE-090929-1 [details] [associations]
symbol:fancm "Fanconi anemia, complementation group
M" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR006166 InterPro:IPR011545 InterPro:IPR020819
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00891 ZFIN:ZDB-GENE-090929-1 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
HOVERGEN:HBG081520 KO:K10896 Gene3D:3.40.50.10130 EMBL:EF088195
IPI:IPI00882629 RefSeq:NP_001107132.1 UniGene:Dr.154581
ProteinModelPortal:A8QLH8 GeneID:100006685 KEGG:dre:100006685
NextBio:20787226 Uniprot:A8QLH8
Length = 1761
Score = 129 (50.5 bits), Expect = 1.8e-09, Sum P(6) = 1.8e-09
Identities = 42/188 (22%), Positives = 90/188 (47%)
Query: 704 PKVQSLIKILLK-YQHTEDFRAIIFVE-RVVAALVLPKVFAELPSL-----SFVKSASLI 756
PK+Q L +++L+ +Q + + V+ RV+ + E+ + V+ + +
Sbjct: 408 PKLQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSYRESVQEIAEMLNRHQPLVRVMTFM 467
Query: 757 GHNNS-QEMRTFQMQETIA---KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVL 812
G ++ + +R F +E + +FR+G LV+T V EEGLDI + ++++ FD K+ +
Sbjct: 468 GQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQKSPI 527
Query: 813 AYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAI-ERTDLSHLKDTSR 871
+Q GR + I++I T+ ++++ ++ K + + D+ R
Sbjct: 528 RLVQRMGRTGRQRQGRIVVILAEGREERTY-NQSQSNRRSINKSIMGNKHSFQMFSDSPR 586
Query: 872 LISVDAVP 879
++ D P
Sbjct: 587 MLPADVTP 594
Score = 103 (41.3 bits), Expect = 1.8e-09, Sum P(6) = 1.8e-09
Identities = 33/98 (33%), Positives = 45/98 (45%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL V E A +NT+ L TG GKT IA +L+ + R VF+ P PLV
Sbjct: 78 REYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNY----YRWFPAGKIVFMAPTKPLV 133
Query: 365 YQQAE-------VIREQTGYVVGHYCGEMGQDFWDAQR 395
QQ E + +E T + G + W ++R
Sbjct: 134 AQQIEACYRVMGIPQEHTAELTGSTAAPQRRSLWSSRR 171
Score = 80 (33.2 bits), Expect = 1.8e-09, Sum P(6) = 1.8e-09
Identities = 48/202 (23%), Positives = 85/202 (42%)
Query: 430 LILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV-NLKGVSSQVDCAIKICN 488
+++DE H A H Y V+ E T + + V ++A+P ++K V QV + I +
Sbjct: 182 VVIDEAHKATGNHAYCQVIRELRKQTPQFR---VLALSATPGGDVKAVQ-QVISNLLISH 237
Query: 489 LESKL-DSV-VCTIKDRKELEKHVPMPSEVVVEYDKA--ASLWSLHEQLKQMEVAVEEAA 544
+E + DS V T ++ LEK V E + Y L +L QM + +
Sbjct: 238 IELRSEDSPDVQTHVHQRSLEKMVVPLGESLTHYQTRYLQVLERFSSRLTQMRLLNQRDL 297
Query: 545 QSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGA-ANLIQKLRAINYALGELGQWC 603
++ S K+Q + AR+ + + G ++ +G A LI L ++G
Sbjct: 298 RAFS---KYQIILAREQFRRNPPPHIQGPQQQGVLEGDFALLISLYHGFELLL-QMGIRS 353
Query: 604 AYKVAQSFLTALQNDERANYQL 625
+ Q+ T + R +L
Sbjct: 354 LFLFIQNIFTGPRESSRVRNEL 375
Score = 43 (20.2 bits), Expect = 1.8e-09, Sum P(6) = 1.8e-09
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 1653 PPGRLTDLRAAAVNNENFARVAVKHKLHVHL 1683
P L D R + +E + + ++H L VH+
Sbjct: 1537 PLAVLVDARCISGGSELLSLLRIRHHLQVHV 1567
Score = 42 (19.8 bits), Expect = 1.8e-09, Sum P(6) = 1.8e-09
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 970 KKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPE 1016
K H + F+ + D+ E VD ++E + + E PE
Sbjct: 1382 KPKHNLNIFSQVPEQDESYAEDSFVVDGSEEEDEVSADEESVELIPE 1428
Score = 37 (18.1 bits), Expect = 1.8e-09, Sum P(6) = 1.8e-09
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 1862 CLRRNWPMPLYRCVR 1876
C+ R+ +YRC+R
Sbjct: 1733 CVSRSRAEEIYRCLR 1747
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 109 (43.4 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 53/216 (24%), Positives = 96/216 (44%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PKVPLVYQQAEVIREQTG 376
K+ I ETG+GKT + +I N + N K L+V + P L Q + + E T
Sbjct: 191 KDVIGVAETGSGKTF--AFGVPAINNIITTGNTKTLSVLCISPTRELALQIYDNLIELTA 248
Query: 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436
+ G D Q R+ T V+V T L++++ I + +N L+LDE
Sbjct: 249 DSGVNCVAVYGGVSKDDQI--RKIKTANVVVATPGRLVDLINDGAINLGKVNYLVLDEAD 306
Query: 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQ-VDCAIKICNLESKLDS 495
++K + + +T++ E++ +F T P ++ +++ ++ +K+
Sbjct: 307 RMLEKGFEEDIKTIISNTSNSERQTLMFTATW-PKEVRELANNFMNSPVKV--------- 356
Query: 496 VVCTIKDRKELE--KHVPMPSEVVVEYDKAASLWSL 529
T+ DR EL K + EV+ ++DK L L
Sbjct: 357 ---TVGDRDELSANKRITQVVEVINKFDKEKKLIQL 389
Score = 107 (42.7 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 51/160 (31%), Positives = 72/160 (45%)
Query: 705 KVQSLIKILLKYQHTE--DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762
K + LI++L KY E D + +IF A ++ L F S + I + SQ
Sbjct: 382 KEKKLIQLLRKYNANESSDNKILIFALYKKEA---SRIENFLKRNRF--SVAAIHGDLSQ 436
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS---RG 819
+ RT ++ F+ G+ LL+AT VA GLDI VVI T+ Y+ G
Sbjct: 437 QQRT----AALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTG 492
Query: 820 RARKPGSDYILMIE-RGNLSHA--TFLRNARNS--EETLR 854
RA G+ + L E +LS A LR A EE L+
Sbjct: 493 RAGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEELLK 532
Score = 52 (23.4 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 112 KDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSED 171
K+ D+KRK +N E+V + + K +L K+ +D + + + +
Sbjct: 41 KEHKDKKRKHDN-EDVE--IADSKKQRKLEKQEKKDKKDKKDKKEKKEKKEKKHKKEKKH 97
Query: 172 RFSKRARVSVCKNESQYSSRGQYCSSDK 199
+ S+ + V N+S SS Y S K
Sbjct: 98 KDSESSPVEPAANDS--SSSTNYTQSSK 123
Score = 40 (19.1 bits), Expect = 3.4e-07, Sum P(3) = 3.4e-07
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 182 CKNESQYSSRGQYCSSDK 199
C N+ +Y ++ Q S DK
Sbjct: 23 CSNQRKYITKQQTMSKDK 40
>DICTYBASE|DDB_G0274841 [details] [associations]
symbol:fncM "ATP-dependent DNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274841 GO:GO:0005524
GO:GO:0003677 GO:GO:0006974 EMBL:AAFI02000012 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1111
KO:K10896 RefSeq:XP_644014.1 ProteinModelPortal:Q8T145
EnsemblProtists:DDB0217507 GeneID:8619444 KEGG:ddi:DDB_G0274841
InParanoid:Q8T145 Uniprot:Q8T145
Length = 1789
Score = 150 (57.9 bits), Expect = 2.7e-08, Sum P(5) = 2.7e-08
Identities = 54/191 (28%), Positives = 87/191 (45%)
Query: 300 PEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359
PE+ R YQ ++ A +NT+ L TG GKT IA +L+ + + + K+ VFLV
Sbjct: 469 PEDNIREYQFKFIQSAFLENTMICLPTGLGKTFIASILMLNYYHWFPKS--KL--VFLVH 524
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
LV QQ E TG G +R Q +++K+V T QIL N +
Sbjct: 525 TKSLVSQQIEAFHRDTGIPKSDSIQFTGDTTSKLKR-QSLWNSKRVFFSTPQILANDIGS 583
Query: 420 SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQ 479
+I +++DE H A + Y + + + ++ R V +TA+P + +
Sbjct: 584 GNCDPRSICCIVIDEAHRAQGNYDYCVAI-KLILKVNRFFR--VLALTATPGSNNAAIQK 640
Query: 480 VDCAIKICNLE 490
V + I N+E
Sbjct: 641 VINNLLISNME 651
Score = 101 (40.6 bits), Expect = 2.7e-08, Sum P(5) = 2.7e-08
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA-RKPGS 826
+ Q + F +G + +LV+T + EEGLDI + ++V+ +D+ ++ L Q GR RK
Sbjct: 886 EQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLVVCYDVQQSSLKNTQRTGRTGRKRDG 945
Query: 827 DYILMIERG 835
I +I +G
Sbjct: 946 RCIFLITQG 954
Score = 48 (22.0 bits), Expect = 0.00083, Sum P(4) = 0.00083
Identities = 26/90 (28%), Positives = 37/90 (41%)
Query: 1666 NNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLG 1725
NN N K + V +G SA D+ ++ K+ + +L NSF GD
Sbjct: 851 NNNNGGGGGGKSLIKVMPFYGQSATDKGVKGIHKKEQQAIL----NSFVNGDINV----- 901
Query: 1726 DIVESIAGAIFLDSGR-DTSVVWQVFQPLL 1754
+V + G LD G D V + V Q L
Sbjct: 902 -LVSTCIGEEGLDIGEVDLVVCYDVQQSSL 930
Score = 45 (20.9 bits), Expect = 2.7e-08, Sum P(5) = 2.7e-08
Identities = 17/84 (20%), Positives = 32/84 (38%)
Query: 90 DSTGGENHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENG 149
+ GE+ A + + ++ S G N N N N +++ N
Sbjct: 221 NKNSGESSSAPKDMEVDSSNSSSSGTTNVNN--NSSNNNN---NNNNNNNNNNNNNNNNN 275
Query: 150 VHRDNGNNDHEASRIRDFDSEDRF 173
+ +N NN+++ I D D + F
Sbjct: 276 NNNNNNNNNNKPIIIEDMDFDIDF 299
Score = 42 (19.8 bits), Expect = 2.7e-08, Sum P(5) = 2.7e-08
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 471 VNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLH 530
+ + G+ S D KI NLE D+ TIK + E + +++ K+ +H
Sbjct: 759 LKVHGLESFYD---KISNLE---DASSKTIKAFSKNENW----KQFIIKIKKSIDNGLVH 808
Query: 531 EQL-KQMEVAVEEAAQSSSRRSK 552
++L K +V +E ++ R SK
Sbjct: 809 DKLIKLNDVLIEHFQSNNPRSSK 831
Score = 41 (19.5 bits), Expect = 2.2e-07, Sum P(6) = 2.2e-07
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 522 KAASLWSLHEQLKQMEVAVEEAAQSSSRRSKW-QFM 556
K L S ++++ +E A + ++ S+ W QF+
Sbjct: 760 KVHGLESFYDKISNLEDASSKTIKAFSKNENWKQFI 795
Score = 39 (18.8 bits), Expect = 2.7e-08, Sum P(5) = 2.7e-08
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1481 DTKDGDSSLFDQ-EKSVAEDKLGTDKNY 1507
D + D SLF+ +KS + KNY
Sbjct: 1019 DYYEDDDSLFENNKKSTTSRGVKNSKNY 1046
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(6) = 1.8e-07
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 993 EKVDQNDEGE 1002
+K D NDEG+
Sbjct: 1460 DKFDDNDEGD 1469
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(6) = 1.8e-07
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 836 NLSHATFLRNARNSEETLRKEAIERTDLSH 865
N +T R +NS+ L + I L+H
Sbjct: 1030 NNKKSTTSRGVKNSKNYLADDQIRYMQLNH 1059
Score = 37 (18.1 bits), Expect = 9.9e-07, Sum P(6) = 9.9e-07
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 104 LLSNNGSDKDGVDRKRKLE--NCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDH 159
+L+ N + + +++ N + VN + +++ N + +N NN++
Sbjct: 219 ILNKNSGESSSAPKDMEVDSSNSSSSGTTNVNNNSSNNNNNNNNNNNNNNNNNNNNNN 276
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 140 (54.3 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 46/145 (31%), Positives = 75/145 (51%)
Query: 713 LLKYQHTEDF-RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQE 771
L+++ EDF AIIFV A L + AE + SA+L G N Q +R ++
Sbjct: 236 LVRFLEAEDFDAAIIFVRTKNATLEV----AEALERNGYNSAALNGDMN-QALR----EQ 286
Query: 772 TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG--SDYI 829
T+ + +DGR+ +L+AT VA GLD+ + ++V+ +D+ +Y+ GR + G +
Sbjct: 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRAL 346
Query: 830 LMIERGNLSHATFLRNARNSEETLR 854
L +E N R RN E T++
Sbjct: 347 LFVE--NRER----RLLRNIERTMK 365
Score = 81 (33.6 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 35/150 (23%), Positives = 67/150 (44%)
Query: 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
EA + E+ P Q + + ++ + +TG+GKT L + +L + K
Sbjct: 19 EALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSL---PLLQNLDPELKAP 75
Query: 353 LAVFLVPKVPLVYQQAEVIREQTGYVVG-HYCGEMGQDFWDAQ-RWQREFDTKQVLVMTA 410
+ L P L Q AE + + + ++ G + G +D Q R R+ Q++V T
Sbjct: 76 QILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ--GPQIVVGTP 133
Query: 411 QILLNILRHSIIKMEAINLLILDECHHAVK 440
LL+ L+ + + ++ L+LDE ++
Sbjct: 134 GRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163
Score = 44 (20.5 bits), Expect = 4.6e-08, Sum P(3) = 4.6e-08
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1757 MVTPETLPMHPVRELQER 1774
++ P PM P RE ++R
Sbjct: 438 LIVPPDAPMRPKREFRDR 455
Score = 37 (18.1 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 1159 RTLGGDRREYG--F-GKLRHG 1176
R GG+RRE G F G+ R G
Sbjct: 576 RGFGGERREGGRNFSGERREG 596
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 132 (51.5 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 34/106 (32%), Positives = 56/106 (52%)
Query: 1590 VDFHALEDALKIKFKDRGLLVEAITHAS----RPSSGVSCYQRLEFVGDAVLDHLITKHL 1645
+D LE +L +KF++ LL +A+ H S P+ +R+EF+GDAVL + L
Sbjct: 2 LDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRL 61
Query: 1646 FFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKL--HVHLRHGSSA 1689
+ + ++ G LT R+ V E+ RVA+ L +++L G A
Sbjct: 62 YHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDA 107
Score = 69 (29.3 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 1721 PKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQ 1778
P L E++ AI+LD G D + V++++F+ ++ + T + + R LQE Q Q
Sbjct: 114 PANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSR-LQELVQAQ 172
Query: 1779 AEG------LEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ +++ +L EVY + + KK A+ AA+
Sbjct: 173 FQLTPRYRIIDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKEAETSAAK 221
Score = 43 (20.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 1870 PLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAA 1919
P YR + GP H F V T DK E G S K+A+ SAA
Sbjct: 177 PRYRIIDFSGPEHNHLFI--AEVYTEDKVLA-EGSGR---SKKEAETSAA 220
>UNIPROTKB|F6QFS2 [details] [associations]
symbol:F6QFS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00640000091530
EMBL:DAAA02052960 EMBL:DAAA02052959 IPI:IPI00843333
Ensembl:ENSBTAT00000043352 OMA:SHERQLE Uniprot:F6QFS2
Length = 373
Score = 160 (61.4 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 70/264 (26%), Positives = 113/264 (42%)
Query: 305 RPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364
R YQL + A NT+ L TG GKT IA +++ + R VF+ P PLV
Sbjct: 98 RDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVMYNF----YRWFPSGKVVFMAPTKPLV 153
Query: 365 YQQAEVIREQTGYVVGHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422
QQ E G H G Q F + W +K+VL +T Q+++N L
Sbjct: 154 TQQIEACYRVMGIPQSHMAEMTGSTQAFTRKEIWS----SKRVLFLTPQVMVNDLSRGAC 209
Query: 423 KMEAINLLILDECHHAVKKHPYS--LVMSEFYHTTSKEKRPSVFGMTASPVN-LKGVSSQ 479
I L++DE H A+ + Y +++ FY S+ R + + PV+ +K V
Sbjct: 210 PAAEIKCLVIDEAHKALGNYAYCQVILLKIFY---SQNFR--LLNLRIPPVSSIKAVQQV 264
Query: 480 V-DCAIKICNLESKLDSVVCTIKDRKELEKHV-PMPSEV-VVEYDKAASLWSLHEQLKQM 536
+ + I L S+ + + +EK V P+ E+ ++ L + L Q
Sbjct: 265 ITNLLIGQIELRSEDSPDILPYSHERRVEKLVVPLGEELEAIQKAYIQILEAFASSLIQR 324
Query: 537 EVAVEEAAQSSSRRSKWQFMGARD 560
V + + + + K+Q + ARD
Sbjct: 325 NVLMRKDIPNLT---KYQIILARD 345
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 148 (57.2 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 84/312 (26%), Positives = 132/312 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEV--GCPSRPACVPESVL-RSV- 1590
+A+ EALIG Y+EGG + A L + E D EV P P V E + R +
Sbjct: 960 MANCFEALIGAVYLEGGLEEAKDLFGRLLFNTE-DMREVWLNYPPHPLQVQEPLTDRQLI 1018
Query: 1591 -------DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDHLI 1641
EDA+ + F LL A T + + ++ QR+EF+GD+++ +
Sbjct: 1019 ESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVA 1078
Query: 1642 TKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEV 1701
T++LF + + G LT LR++ VNN A+VA + L Q +F +
Sbjct: 1079 TEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE-------------LGMQ--EFA--I 1121
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPMVT 1759
+ K L K L D++ES A+++D + V F P L +
Sbjct: 1122 TNDKTK---RPVAL----RTKTLADLLESFIAALYIDKDLEFVHTFMNVCFFPRLKEFIL 1174
Query: 1760 PETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGVAQ 1808
+ P +LQ+ C + EG E YK ++ TV VY G ++G +
Sbjct: 1175 NQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK 1233
Query: 1809 NPQKKMAQKLAA 1820
P + A+ AA
Sbjct: 1234 GPSIQQAEMGAA 1245
Score = 114 (45.2 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 1619 PS-SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKH 1677
PS S ++ +RLEF+GDAV++ L + HL+ + +L G L R A V N++ A +A K
Sbjct: 877 PSPSRINHNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 936
Query: 1678 KLHVHL--RHGSSAL-DRQIRDFVKEVLEELLKPGFNSFGLGDCK 1719
+L + HG + +R + E L+ + GL + K
Sbjct: 937 ELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGGLEEAK 981
Score = 111 (44.1 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q +
Sbjct: 1064 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1119
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 1201 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 1253
Score = 73 (30.8 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 886 ERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942
Score = 53 (23.7 bits), Expect = 7.5e-08, Sum P(3) = 7.5e-08
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 151 HRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDR 201
HR + +++ + R+F E KR R C +E + S + C SD DR
Sbjct: 193 HRGHSYSEYGSRHNREFGGE----KRDRG--CSSERRRSDSPRRCKSDYDR 237
Score = 51 (23.0 bits), Expect = 0.00012, Sum P(4) = 0.00012
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 1132 LRTKTLADLLESFIAALYID 1151
Score = 41 (19.5 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 1595 LEDALKIKFKDRGLLVEAITHAS 1617
L+ + FK+R LL A+TH S
Sbjct: 799 LDKLIGYMFKERCLLQLAMTHPS 821
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 147 (56.8 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 45/163 (27%), Positives = 79/163 (48%)
Query: 1532 SKTLADVVEALIGVYYVEGG-KDAANHLMKWI--GIQVESDPE---------EVGCPSRP 1579
SK AD++EA IG Y+E G KD+ + ++KWI SD + E+
Sbjct: 991 SKPHADLIEAFIGAIYIECGFKDSFDWIIKWIFDNSYYGSDNKIYGGGGGGSEINNNDEL 1050
Query: 1580 ACVPESVLRSVDFHALEDALK-IKFKDRGLLVEAITHA---SRPSSGVSCYQRLEFVGDA 1635
+ ++++ + + L F D+ + + H ++ + +RLEF+GDA
Sbjct: 1051 PIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNNTNFSERLEFLGDA 1110
Query: 1636 VLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK 1678
VLD ++ +LF Y G LT+ ++ VNNEN +++ +K
Sbjct: 1111 VLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILKSNK 1153
Score = 83 (34.3 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1402 YERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
Y+R E LGD+ LK S +LF K+ + EG L++ R+ N L + + G YI
Sbjct: 925 YQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFD-YI 981
Score = 48 (22.0 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 21/108 (19%), Positives = 41/108 (37%)
Query: 31 IDEFVNFDTSVVQDSVDNTSNQ-DSLSNDFFGGIDHILDSIXXXXXXXXXXXXXXXXXXE 89
+D+F+ +++ +D S Q D L N F I ++S+
Sbjct: 333 LDQFLK-QQLILEQKLDKISKQLDRLDNTTFSSIFESMNSLHDNLKILINNKKNNKNNNN 391
Query: 90 DSTGGE---NHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNG 134
++ G N+ +NN SD + ++ K +N +N + G
Sbjct: 392 NNNSGSIDINNNNNN----NNNNSDSNSINSKIDFDN-NKINRNALEG 434
Score = 44 (20.5 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQ 479
+++NLL DE +A K + +++E Y K+ T + + L S Q
Sbjct: 453 KSVNLL--DELANAKKNKNKNNIITEDYSLDDKKNNNESTSTTTTTIALSSPSDQ 505
Score = 40 (19.1 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 1722 KVLGDIVESIAGAIFLDSG--RDTSVVWQVF 1750
K +GD +ES G +L G + + V+++F
Sbjct: 1170 KRMGDHIESYIGGFYLKFGFEKTKNRVYKLF 1200
Score = 38 (18.4 bits), Expect = 8.6e-07, Sum P(5) = 8.6e-07
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 131 LVNGKAGGRLSDHFTKENGV----HRDNGNNDHEASRIR---DFDSEDRFSKRA 177
L+N K + +++ + + +N NN+ +++ I DFD+ ++ ++ A
Sbjct: 379 LINNKKNNKNNNNNNNSGSIDINNNNNNNNNNSDSNSINSKIDFDN-NKINRNA 431
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 1051 NNGISKDPFLTQVSDFAVLFSSELDAELASLKNFHVRLMSIVLDVDVEPYTTPWDP 1106
N G+ DPF T + L + + S K +VLD +E T P
Sbjct: 28 NEGLDHDPFFTTTCIY--LGHEFVSTKKKSKKEAEADCSQLVLDF-LEKRQTQQQP 80
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 147 (56.8 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 45/163 (27%), Positives = 79/163 (48%)
Query: 1532 SKTLADVVEALIGVYYVEGG-KDAANHLMKWI--GIQVESDPE---------EVGCPSRP 1579
SK AD++EA IG Y+E G KD+ + ++KWI SD + E+
Sbjct: 991 SKPHADLIEAFIGAIYIECGFKDSFDWIIKWIFDNSYYGSDNKIYGGGGGGSEINNNDEL 1050
Query: 1580 ACVPESVLRSVDFHALEDALK-IKFKDRGLLVEAITHA---SRPSSGVSCYQRLEFVGDA 1635
+ ++++ + + L F D+ + + H ++ + +RLEF+GDA
Sbjct: 1051 PIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNNTNFSERLEFLGDA 1110
Query: 1636 VLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK 1678
VLD ++ +LF Y G LT+ ++ VNNEN +++ +K
Sbjct: 1111 VLDFIVADYLFSKYKEQQEGYLTESKSKLVNNENLSKILKSNK 1153
Score = 83 (34.3 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 1402 YERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
Y+R E LGD+ LK S +LF K+ + EG L++ R+ N L + + G YI
Sbjct: 925 YQRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFD-YI 981
Score = 48 (22.0 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 21/108 (19%), Positives = 41/108 (37%)
Query: 31 IDEFVNFDTSVVQDSVDNTSNQ-DSLSNDFFGGIDHILDSIXXXXXXXXXXXXXXXXXXE 89
+D+F+ +++ +D S Q D L N F I ++S+
Sbjct: 333 LDQFLK-QQLILEQKLDKISKQLDRLDNTTFSSIFESMNSLHDNLKILINNKKNNKNNNN 391
Query: 90 DSTGGE---NHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNG 134
++ G N+ +NN SD + ++ K +N +N + G
Sbjct: 392 NNNSGSIDINNNNNN----NNNNSDSNSINSKIDFDN-NKINRNALEG 434
Score = 44 (20.5 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQ 479
+++NLL DE +A K + +++E Y K+ T + + L S Q
Sbjct: 453 KSVNLL--DELANAKKNKNKNNIITEDYSLDDKKNNNESTSTTTTTIALSSPSDQ 505
Score = 40 (19.1 bits), Expect = 9.6e-08, Sum P(5) = 9.6e-08
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 1722 KVLGDIVESIAGAIFLDSG--RDTSVVWQVF 1750
K +GD +ES G +L G + + V+++F
Sbjct: 1170 KRMGDHIESYIGGFYLKFGFEKTKNRVYKLF 1200
Score = 38 (18.4 bits), Expect = 8.6e-07, Sum P(5) = 8.6e-07
Identities = 11/54 (20%), Positives = 28/54 (51%)
Query: 131 LVNGKAGGRLSDHFTKENGV----HRDNGNNDHEASRIR---DFDSEDRFSKRA 177
L+N K + +++ + + +N NN+ +++ I DFD+ ++ ++ A
Sbjct: 379 LINNKKNNKNNNNNNNSGSIDINNNNNNNNNNSDSNSINSKIDFDN-NKINRNA 431
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(4) = 1.0e-06
Identities = 15/56 (26%), Positives = 21/56 (37%)
Query: 1051 NNGISKDPFLTQVSDFAVLFSSELDAELASLKNFHVRLMSIVLDVDVEPYTTPWDP 1106
N G+ DPF T + L + + S K +VLD +E T P
Sbjct: 28 NEGLDHDPFFTTTCIY--LGHEFVSTKKKSKKEAEADCSQLVLDF-LEKRQTQQQP 80
>ZFIN|ZDB-GENE-061013-64 [details] [associations]
symbol:ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
28" species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-061013-64 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:BC124668 IPI:IPI00805270 RefSeq:NP_001070800.1
UniGene:Dr.84136 ProteinModelPortal:Q08BL1 GeneID:768189
KEGG:dre:768189 InParanoid:Q08BL1 NextBio:20918504
ArrayExpress:Q08BL1 Uniprot:Q08BL1
Length = 558
Score = 115 (45.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 60/237 (25%), Positives = 98/237 (41%)
Query: 308 QLDVLEQAKK-KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKML-AVFLVPKVPLV 364
QL + + K +N + ETG+GKTL +L +I + DL +++ + AV +VP L
Sbjct: 178 QLQTIPKILKGRNILCAAETGSGKTLTYLLPIIHRLQEDLLAGSERSIRAVVIVPSRELA 237
Query: 365 YQQAEVIR---EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI 421
Q V R E+ G VV G G A + + D +LV T LL L
Sbjct: 238 EQVNSVARSVSERFGLVVKVVGGGRGVGTIKAAFARGQPD---ILVSTPGALLKALWKRF 294
Query: 422 IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVD 481
I + + L++DE ++ HT + G+ A L V +
Sbjct: 295 ISLSELYFLVIDEADTMFDDSFAGMLEKILSHTQVASRLSETIGL-ARKAQLVVVGATFP 353
Query: 482 CAI-KICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQME 537
+ + + + L S+ T+K R L +P + + A + LH+ LK+ E
Sbjct: 354 GGVGDVLSKATDLASI-STVKSRM-LHHLMPHIKQTFLRVKGADKILELHQALKRAE 408
Score = 99 (39.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 756 IGHNNSQEMRTFQMQETIAK-FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY 814
+GH Q M+E + + F+ G+ +LV T +A GLD ++ +++ +D ++ Y
Sbjct: 436 VGHMRLQGEMPAAMREGVFRDFQRGKTNVLVCTDIASRGLDTQRVGLIVNYDFPESQTDY 495
Query: 815 IQSRGRARKPG 825
I GR + G
Sbjct: 496 IHRAGRVGRAG 506
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 112 (44.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 42/119 (35%), Positives = 56/119 (47%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKML-AVFLVPKVPLVYQQAEVIREQTG 376
++ IA +TG GKT VL I Q Q KK + A+ LVP L Q AE + EQ G
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKV-EQYG 97
Query: 377 YVVG-HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
G G AQ+ QR D VLV T L+++ + E I +++LDE
Sbjct: 98 KDTGLKSLAVFGGVDEQAQK-QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDE 155
Score = 96 (38.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 37/140 (26%), Positives = 65/140 (46%)
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
+L+ L+ Q + +A+IF+E A K+ ++L A G SQ +R
Sbjct: 232 ALLSHLINEQQWD--QALIFIETKHGAA---KLVSQLEKRGIHAEAFHSGR--SQAIRA- 283
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS- 826
Q+ E F+ G++ LVAT VA G+DI Q + V+ +DL Y+ GR + +
Sbjct: 284 QLLED---FKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAV 340
Query: 827 -DYILMIERGNLSHATFLRN 845
+ I + + N + + +
Sbjct: 341 GEAISFVSKDNFKNLCMIES 360
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 112 (44.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 42/119 (35%), Positives = 56/119 (47%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKML-AVFLVPKVPLVYQQAEVIREQTG 376
++ IA +TG GKT VL I Q Q KK + A+ LVP L Q AE + EQ G
Sbjct: 39 RDLIAAAQTGTGKTASFVLPILEKLRQGQTQRKKRVRALILVPTRELAMQVAEKV-EQYG 97
Query: 377 YVVG-HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
G G AQ+ QR D VLV T L+++ + E I +++LDE
Sbjct: 98 KDTGLKSLAVFGGVDEQAQK-QRLIDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDE 155
Score = 96 (38.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 37/140 (26%), Positives = 65/140 (46%)
Query: 708 SLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767
+L+ L+ Q + +A+IF+E A K+ ++L A G SQ +R
Sbjct: 232 ALLSHLINEQQWD--QALIFIETKHGAA---KLVSQLEKRGIHAEAFHSGR--SQAIRA- 283
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS- 826
Q+ E F+ G++ LVAT VA G+DI Q + V+ +DL Y+ GR + +
Sbjct: 284 QLLED---FKSGKIKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAV 340
Query: 827 -DYILMIERGNLSHATFLRN 845
+ I + + N + + +
Sbjct: 341 GEAISFVSKDNFKNLCMIES 360
>UNIPROTKB|C9JE76 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IEA] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA] [GO:1900245 "positive regulation of
MDA-5 signaling pathway" evidence=IEA] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA]
InterPro:IPR006935 Pfam:PF04851 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0051607 GO:GO:0016787 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039536
GO:GO:0045824 GO:GO:1900245 GO:GO:1900246 HGNC:HGNC:29517
ChiTaRS:DHX58 GO:GO:0032481 EMBL:AC105024 IPI:IPI00794515
ProteinModelPortal:C9JE76 SMR:C9JE76 STRING:C9JE76
Ensembl:ENST00000430773 HOGENOM:HOG000200084 ArrayExpress:C9JE76
Bgee:C9JE76 Uniprot:C9JE76
Length = 156
Score = 133 (51.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/158 (29%), Positives = 76/158 (48%)
Query: 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361
+ R YQ +V+ A + KN I +L TGAGKT A + + L+ + + V LV +V
Sbjct: 2 ELRSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAK---RHLETVDGAKVVV-LVNRV 57
Query: 362 PLVYQQAEVIREQTG--YVVGHYCGEMGQ--DFWDAQRWQREFDTKQVLVMTAQILLNIL 417
LV Q E R + V G+MG F R +L+ TA++L L
Sbjct: 58 HLVTQHGEEFRRMLDGRWTVTTLSGDMGPRAGFGHLARCH------DLLICTAELLQMAL 111
Query: 418 ----RHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451
+++ +L+++DECHH K Y+++MS++
Sbjct: 112 TSPEEEEHVELTVFSLIVVDECHHTHKDTVYNVIMSQY 149
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 111 (44.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 39/163 (23%), Positives = 74/163 (45%)
Query: 318 KNTIAFLETGAGKTL-IAVLLIRSICNDLQRQNKKMLAVFLVPKVPL-VYQQAEVIREQT 375
K+ + ETG+GKT V I + ND +++ ++L + ++ +Y V+ ++
Sbjct: 150 KDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELASQIYDNLIVLTDKV 209
Query: 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435
G C G D QR Q + QV+V T LL++L+ + + +N L+LDE
Sbjct: 210 GM---QCCCVYGGVPKDEQRIQLK--KSQVVVATPGRLLDLLQEGSVDLSQVNYLVLDEA 264
Query: 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSS 478
++K + + T KR ++ P ++ ++S
Sbjct: 265 DRMLEKG-FEEDIKNIIRETDASKRQTLMFTATWPKEVRELAS 306
Score = 98 (39.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 40/135 (29%), Positives = 65/135 (48%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP-SLSFVK-SASLIGHNNSQ 762
K + L+++L KY H+ + E+V+ + K A + +L + + + I + SQ
Sbjct: 341 KERKLLELLKKY-HSGPKKN----EKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQ 395
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS---RG 819
+ RT + E F+ G+ LL+AT VA GLDI VI TV Y+ G
Sbjct: 396 QQRTQALNE----FKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTG 451
Query: 820 RARKPGSDYILMIER 834
RA + G+ + L E+
Sbjct: 452 RAGQTGTAHTLFTEQ 466
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 115 (45.5 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q Y
Sbjct: 57 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 112
Score = 74 (31.1 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 194 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 246
Score = 51 (23.0 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 125 LRTKTLADLLESFIAALYID 144
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 115 (45.5 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q Y
Sbjct: 58 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 113
Score = 74 (31.1 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 195 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 247
Score = 51 (23.0 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 126 LRTKTLADLLESFIAALYID 145
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 116 (45.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 35/116 (30%), Positives = 61/116 (52%)
Query: 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782
+A+IF+E A K+ ++L V A I +Q++R ++ + F+ G++
Sbjct: 250 QALIFIETKHGAA---KLVSQLEKRGIV--AESIHSGRAQDIR----EKILNDFKSGKIK 300
Query: 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS--DYILMIERGN 836
LVAT++A GLDI + + VI +DL V YI GR + G+ + I ++ + N
Sbjct: 301 FLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDN 356
Score = 87 (35.7 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 34/124 (27%), Positives = 57/124 (45%)
Query: 318 KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLA-----VFLVPKVPLVYQQAEVI 371
K+ IA +TG GKT VL L+ + + + KK+ A + LVP L Q I
Sbjct: 39 KDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASI 98
Query: 372 REQTGYV-VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLL 430
+ Y+ + G D + + QR +LV T LL++ ++ + +++L
Sbjct: 99 SQYAKYLDISSMAMYGGVDAQEQK--QRLIWGVDILVATPGRLLDMTHQRVLHFDELDML 156
Query: 431 ILDE 434
+LDE
Sbjct: 157 VLDE 160
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 121 (47.7 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 35/82 (42%), Positives = 45/82 (54%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRP--SSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNL 1652
L DAL + D LL A+TH S + G+ +RLEF+GDAVL IT LF + +
Sbjct: 8 LLDALGVDLPDE-LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDR 66
Query: 1653 PPGRLTDLRAAAVNNENFARVA 1674
G L LRA+ VN + A VA
Sbjct: 67 SEGDLAKLRASVVNTQALADVA 88
Score = 72 (30.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 32/113 (28%), Positives = 49/113 (43%)
Query: 1716 GDCKAPKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLDPMVTPETLPMHPVRELQE 1773
G +L D +ES+ GAI+L G + + V+ ++F PLLD T + LQE
Sbjct: 110 GGADKSSILADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGA-GLDWKTSLQE 168
Query: 1774 RCQQQAEGL-EYKASRSG-----NLATVEVYIDGVQVGVAQNPQKKMAQKLAA 1820
+ G Y + +G V V +D + G KK A++ AA
Sbjct: 169 LTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDS-EYGSGVGRSKKEAEQKAA 220
Score = 57 (25.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKA 1914
+ +L ++ R P Y V GP H K FT V V ++ G VG ++
Sbjct: 163 KTSLQELTAARGLGAPSY-LVTSTGPDHDKEFTAVVVVMDSEYG---SGVGRSKKEAEQK 218
Query: 1915 KDSAAVLLLELLN 1927
+AA LE+L+
Sbjct: 219 AAAAAWKALEVLD 231
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 132 (51.5 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 80/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 293 MANCFEALIGAVYLEGSLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 349
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L E+A+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 350 LIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 409
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 410 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 465
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 466 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 505
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 506 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 564
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 565 GKGPSIQQAEMGAA 578
Score = 115 (45.5 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q Y
Sbjct: 397 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 452
Score = 110 (43.8 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 1621 SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLH 1680
S ++ +RLEF+GDAV++ L + HL++ + +L G L R A V N++ A +A K +L
Sbjct: 213 SRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELD 272
Query: 1681 VHL--RHGSSAL-DRQIRDFVKEVLEELL 1706
+ HG + +R + E L+
Sbjct: 273 RFMLYAHGPDLCRESDLRHAMANCFEALI 301
Score = 75 (31.5 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 219 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 275
Score = 74 (31.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 534 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 586
Score = 51 (23.0 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 465 LRTKTLADLLESFIAALYID 484
Score = 41 (19.5 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 1595 LEDALKIKFKDRGLLVEAITHAS 1617
L+ + F+DR LL A+TH S
Sbjct: 132 LDKLIGYTFQDRCLLQLAMTHPS 154
>UNIPROTKB|F1NE03 [details] [associations]
symbol:Gga.50035 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IEA] [GO:0071821 "FANCM-MHF complex" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL Gene3D:3.40.50.10130
GeneTree:ENSGT00640000091530 EMBL:AADN02004087 EMBL:AADN02004088
IPI:IPI00590518 Ensembl:ENSGALT00000020359 ArrayExpress:F1NE03
Uniprot:F1NE03
Length = 1836
Score = 134 (52.2 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 34/128 (26%), Positives = 66/128 (51%)
Query: 750 VKSASLIGHNNSQEMRTFQMQE---TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
V+ + +GH+ + + F +E + +FR+G LV+T V EEGLDI + +++I FD
Sbjct: 337 VRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVSTCVGEEGLDIGEVDLIICFD 396
Query: 807 LAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHL 866
K+ + +Q GR + +++I T+ ++++ +++K AI + H
Sbjct: 397 AQKSPIRLVQRMGRTGRQRQGRVVVILAEGREERTY-NQSQSNRRSIQK-AISGNKMLHF 454
Query: 867 KDTS-RLI 873
S R+I
Sbjct: 455 YQHSPRMI 462
Score = 96 (38.9 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 32/124 (25%), Positives = 60/124 (48%)
Query: 397 QRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455
+RE + +++V +T QI++N L + L++DE H A+ H Y V+ E T
Sbjct: 8 RRELWASRRVFFLTPQIMVNDLSRGTCPAVEVKCLVVDEAHKALGNHAYCQVVKELSRYT 67
Query: 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLE--SKLDSVVCTIKDRKELEKHV-PM 512
++ + V +TA+P + QV + I +E S+ + +++EK V P+
Sbjct: 68 TQFR---VLALTATPGSDTKAVQQVVSNLLIAQIELCSEDSPEIQPYSHERQVEKIVVPL 124
Query: 513 PSEV 516
E+
Sbjct: 125 GEEL 128
Score = 39 (18.8 bits), Expect = 8.0e-07, Sum P(3) = 8.0e-07
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1138 TDAWTNP----LQRARPDVYLGTNERTL 1161
TDA P R+R DV L N ++L
Sbjct: 1068 TDAMNTPKLNSASRSRADVQLTANRKSL 1095
>TAIR|locus:2182202 [details] [associations]
symbol:AT5G19210 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC069326 UniGene:At.31320 UniGene:At.429
EMBL:BT004328 IPI:IPI00526020 IPI:IPI00537594 RefSeq:NP_197422.2
RefSeq:NP_974812.1 ProteinModelPortal:Q3E9C3 SMR:Q3E9C3
EnsemblPlants:AT5G19210.2 GeneID:832041 KEGG:ath:AT5G19210
GeneFarm:1569 TAIR:At5g19210 HOGENOM:HOG000005705 InParanoid:Q3E9C3
OMA:SASIPQH PhylomeDB:Q3E9C3 ProtClustDB:CLSN2918195
Genevestigator:Q3E9C3 GermOnline:AT5G19210 Uniprot:Q3E9C3
Length = 472
Score = 106 (42.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 772 TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA-RKPGSD 827
++ + R G LLV+T +A G+D+ + + FDL +TV Y+ GRA RKP SD
Sbjct: 383 SLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSD 439
Score = 97 (39.2 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 42/160 (26%), Positives = 70/160 (43%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR--EQT 375
++ I +TG+GKTL +LLI S+ N Q + AV +VP L Q +V R
Sbjct: 114 RDCILHAQTGSGKTLTYLLLIFSLINP---QRSSVQAVIVVPTRELGMQVTKVARMLAAK 170
Query: 376 GYVVGHYCGEMGQ-DFWDAQR---WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLI 431
+ C M D +R W + + +LV T L ++L I +++++ +L+
Sbjct: 171 SEIDVKGCTVMALLDGGTLRRHKSWLKA-EPPAILVATVASLCHMLEKHIFRIDSVRVLV 229
Query: 432 LDECHHAV-KKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
+DE V +S +KR +VF + P
Sbjct: 230 VDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIP 269
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 105 (42.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 1373 QLKDKINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
+L K+ Y +++L ALT S ER E LGD+ L +V++ L+ ++P+ +EG
Sbjct: 7 KLTSKLGYTFKETELLNLALTHRSANGKH-NERLEFLGDSILSFVIADELYRRFPKVNEG 65
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
++RMR +V L + L Y++
Sbjct: 66 DMSRMRATLVRGNTLAELGREFDLGDYLK 94
Score = 101 (40.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
L L FK+ LL A+TH R ++G +RLEF+GD++L +I L+ + +
Sbjct: 8 LTSKLGYTFKETELLNLALTH--RSANGKH-NERLEFLGDSILSFVIADELYRRFPKVNE 64
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL 1690
G ++ +RA V A + + L +L+ G L
Sbjct: 65 GDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGEL 100
Score = 85 (35.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/128 (28%), Positives = 56/128 (43%)
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVT 1759
L + LK G G + +L D VE+I GAI+LDS +T S+V + + L+ +
Sbjct: 89 LGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IK 147
Query: 1760 PETLPMHPVRELQERCQQQAEGLE-Y-----KASRSGNLATVEVYIDGVQVGV-AQNPQK 1812
P P LQE Q + + L Y K TV + G+ V + +
Sbjct: 148 PGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSR 207
Query: 1813 KMAQKLAA 1820
+ A++ AA
Sbjct: 208 RKAEQAAA 215
Score = 67 (28.6 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 1846 RKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVG 1905
+ +Q + L + R P+P+Y G AH + FT A V G +G
Sbjct: 147 KPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEV----AGMDTPVIG 202
Query: 1906 EPMPSVKKAKDSAAVLLLELL 1926
+ S +KA+ +AA LE L
Sbjct: 203 KGT-SRRKAEQAAAETALEQL 222
Score = 57 (25.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHL-MKW 1561
LAD VEA+IG Y++ + A + ++W
Sbjct: 111 LADAVEAIIGAIYLDSDLETARSIVLEW 138
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 105 (42.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 1373 QLKDKINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
+L K+ Y +++L ALT S ER E LGD+ L +V++ L+ ++P+ +EG
Sbjct: 7 KLTSKLGYTFKETELLNLALTHRSANGKH-NERLEFLGDSILSFVIADELYRRFPKVNEG 65
Query: 1432 QLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
++RMR +V L + L Y++
Sbjct: 66 DMSRMRATLVRGNTLAELGREFDLGDYLK 94
Score = 101 (40.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
L L FK+ LL A+TH R ++G +RLEF+GD++L +I L+ + +
Sbjct: 8 LTSKLGYTFKETELLNLALTH--RSANGKH-NERLEFLGDSILSFVIADELYRRFPKVNE 64
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL 1690
G ++ +RA V A + + L +L+ G L
Sbjct: 65 GDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGEL 100
Score = 85 (35.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 36/128 (28%), Positives = 56/128 (43%)
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVT 1759
L + LK G G + +L D VE+I GAI+LDS +T S+V + + L+ +
Sbjct: 89 LGDYLKLGPGELKSGGFRRDSILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IK 147
Query: 1760 PETLPMHPVRELQERCQQQAEGLE-Y-----KASRSGNLATVEVYIDGVQVGV-AQNPQK 1812
P P LQE Q + + L Y K TV + G+ V + +
Sbjct: 148 PGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSR 207
Query: 1813 KMAQKLAA 1820
+ A++ AA
Sbjct: 208 RKAEQAAA 215
Score = 67 (28.6 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 23/81 (28%), Positives = 35/81 (43%)
Query: 1846 RKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVG 1905
+ +Q + L + R P+P+Y G AH + FT A V G +G
Sbjct: 147 KPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEV----AGMDTPVIG 202
Query: 1906 EPMPSVKKAKDSAAVLLLELL 1926
+ S +KA+ +AA LE L
Sbjct: 203 KGT-SRRKAEQAAAETALEQL 222
Score = 57 (25.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHL-MKW 1561
LAD VEA+IG Y++ + A + ++W
Sbjct: 111 LADAVEAIIGAIYLDSDLETARSIVLEW 138
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 136 (52.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 81/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 994 MANCFEALIGAVYLEGSLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 1050
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L EDA+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 1051 LIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 1110
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 1111 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 1166
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 1167 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 1206
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 1207 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 1265
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 1266 GKGPSIQQAEMGAA 1279
Score = 115 (45.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q Y
Sbjct: 1098 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1153
Score = 75 (31.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 920 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976
Score = 74 (31.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 1235 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 1287
Score = 51 (23.0 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 1166 LRTKTLADLLESFIAALYID 1185
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 130 (50.8 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 80/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 684 MANCFEALIGAVYLEGTLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 740
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L E+A+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 741 LIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 800
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 801 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 856
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 857 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 896
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 897 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 955
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 956 GKGPSIQQAEMGAA 969
Score = 115 (45.5 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q Y
Sbjct: 788 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 843
Score = 75 (31.5 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 610 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 666
Score = 74 (31.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 925 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 977
Score = 51 (23.0 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 856 LRTKTLADLLESFIAALYID 875
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 116 (45.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 1602 KFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLR 1661
+F+D LL A+TH S + + Y+RLEF+GDAVL ++++ L+ + + G LT R
Sbjct: 23 RFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTKKR 82
Query: 1662 AAAVNNENFARVA 1674
A V +A
Sbjct: 83 IALVRGSKVVEIA 95
Score = 98 (39.6 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 1366 ESMLLAIQLKD-KIN-YPVPASKILE-ALTAAS-CQETFC-YERAELLGDAYLKWVVSRF 1420
E +LA+ K KI+ Y ++L+ A+T S E + YER E LGDA L VVS
Sbjct: 6 EDSILALTEKVFKISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVVSEM 65
Query: 1421 LFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGL 1455
L+ +P EG LT+ R +V + + A S L
Sbjct: 66 LYTLFPDDSEGLLTKKRIALVRGSKVVEIAQSLNL 100
Score = 67 (28.6 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 1529 VLSSKTLADVVEALIGVYYVEGGKDAANH--LMKW 1561
+ ++ L + +EALIG YV+GG ++ H L W
Sbjct: 116 ISNNSNLENALEALIGAIYVDGGLESVRHFILQHW 150
Score = 65 (27.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/107 (28%), Positives = 57/107 (53%)
Query: 1724 LGDIVESIAGAIFLDSGRDT--SVVWQVFQPLLDPMVTPETLPMHPVRE-LQERCQQQAE 1780
L + +E++ GAI++D G ++ + Q ++PL + +T P+ + LQE Q
Sbjct: 122 LENALEALIGAIYVDGGLESVRHFILQHWKPLATNLA--DT-PLQDAKTALQEWAQGHNF 178
Query: 1781 GL-EYKA-SRSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821
+ Y+ ++SG + TVEV ++G +V A +KK A+ AA+
Sbjct: 179 AIPSYRLINKSGLEHAPVFTVEVTVNGQRVH-ATGCKKKYAEIAAAK 224
Score = 63 (27.2 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 1866 NWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLEL 1925
N+ +P YR + + G HA FT V VN G G K A+ +AA L+LE
Sbjct: 177 NFAIPSYRLINKSGLEHAPVFTVEVTVN----GQRVHATG---CKKKYAEIAAAKLMLEK 229
Query: 1926 LNK 1928
+ K
Sbjct: 230 VTK 232
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 104 (41.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 35/88 (39%), Positives = 45/88 (51%)
Query: 739 KVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQ 798
K+ A+L L V + S G + SQ R +QE F+ G V +LVAT VA GLDI +
Sbjct: 260 KLTAQLNKLG-VATQSFHG-DLSQGAREKVLQE----FKQGLVQVLVATDVAARGLDIAE 313
Query: 799 CNVVIRFDLAKTVLAYIQSRGRARKPGS 826
VI F+L YI GR + GS
Sbjct: 314 LQYVINFELPFIAEDYIHRIGRTGRAGS 341
Score = 91 (37.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 42/141 (29%), Positives = 70/141 (49%)
Query: 302 EQARPYQLDVLEQA-KKKNTIAFLETGAGKTL-IAVLLIRSICNDLQRQN--KKMLAVFL 357
+Q P Q++ + K++ +A +TG GKT A+ +++ + D Q + K + A+ L
Sbjct: 22 QQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVL 81
Query: 358 VP--KVPLVYQQAEV-IREQTGYVVGHYCGEMGQDFWDAQRWQREFDTK-QVLVMTAQIL 413
VP ++ L QQ+ V + T VG G G +AQ Q F+ VL+ T L
Sbjct: 82 VPTRELALQVQQSFVKYAKGTDIRVGIAYG--GVSI-EAQ--QAVFNAGIDVLIATPGRL 136
Query: 414 LNILRHSIIKMEAINLLILDE 434
L+ LR + + +N L+ DE
Sbjct: 137 LDHLRQGALNLNQLNTLVFDE 157
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 104 (41.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 35/88 (39%), Positives = 45/88 (51%)
Query: 739 KVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQ 798
K+ A+L L V + S G + SQ R +QE F+ G V +LVAT VA GLDI +
Sbjct: 260 KLTAQLNKLG-VATQSFHG-DLSQGAREKVLQE----FKQGLVQVLVATDVAARGLDIAE 313
Query: 799 CNVVIRFDLAKTVLAYIQSRGRARKPGS 826
VI F+L YI GR + GS
Sbjct: 314 LQYVINFELPFIAEDYIHRIGRTGRAGS 341
Score = 91 (37.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 42/141 (29%), Positives = 70/141 (49%)
Query: 302 EQARPYQLDVLEQA-KKKNTIAFLETGAGKTL-IAVLLIRSICNDLQRQN--KKMLAVFL 357
+Q P Q++ + K++ +A +TG GKT A+ +++ + D Q + K + A+ L
Sbjct: 22 QQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVL 81
Query: 358 VP--KVPLVYQQAEV-IREQTGYVVGHYCGEMGQDFWDAQRWQREFDTK-QVLVMTAQIL 413
VP ++ L QQ+ V + T VG G G +AQ Q F+ VL+ T L
Sbjct: 82 VPTRELALQVQQSFVKYAKGTDIRVGIAYG--GVSI-EAQ--QAVFNAGIDVLIATPGRL 136
Query: 414 LNILRHSIIKMEAINLLILDE 434
L+ LR + + +N L+ DE
Sbjct: 137 LDHLRQGALNLNQLNTLVFDE 157
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 109 (43.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 30/83 (36%), Positives = 43/83 (51%)
Query: 1594 ALEDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDHLITKHLFFSYTN 1651
++ +K FK+ LL EA+TH S S Y+RLEF+GDAVL+ +I++ LF +
Sbjct: 4 SISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPK 63
Query: 1652 LPPGRLTDLRAAAVNNENFARVA 1674
G L + A V VA
Sbjct: 64 DTEGNLAKKKTALVCGNKLVEVA 86
Score = 108 (43.1 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 35/96 (36%), Positives = 49/96 (51%)
Query: 1368 MLLAIQLKDKINYPVPASKILEALTAASC--QET--FCYERAELLGDAYLKWVVSRFLFL 1423
M+ +I K N+ P + EALT S ++T F YER E LGDA L V+S LF
Sbjct: 1 MIESISKIIKYNFKNP-QLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFN 59
Query: 1424 KYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
+P+ EG L + + +V L + A S L +I
Sbjct: 60 IFPKDTEGNLAKKKTALVCGNKLVEVAQSINLGQFI 95
Score = 61 (26.5 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 1858 LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917
L ++ + P P Y + + GP H FT VR+ + + G + K A+
Sbjct: 159 LQELVQGKRLPAPAYHTIDKSGPDHNPTFTVEVRIPSYQ---AIQATGH---NKKLAEQK 212
Query: 1918 AAVLLL-ELLNK 1928
AA L+L ++ NK
Sbjct: 213 AASLMLNQIHNK 224
Score = 57 (25.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 33/105 (31%), Positives = 48/105 (45%)
Query: 1724 LGDIVESIAGAIFLDSGRDTSVVWQVFQPLL-DPMVTPETLPMHPVRE-LQERCQ-QQAE 1780
L + +E++ GAI+LD G + Q F L + T +P + LQE Q ++
Sbjct: 113 LENALEALIGAIYLDGGFTAA---QDFIYLFWEHSATHMNVPPQDAKTILQELVQGKRLP 169
Query: 1781 GLEYKA-SRSG---NLA-TVEVYIDGVQVGVAQNPQKKMAQKLAA 1820
Y +SG N TVEV I Q A KK+A++ AA
Sbjct: 170 APAYHTIDKSGPDHNPTFTVEVRIPSYQAIQATGHNKKLAEQKAA 214
Score = 55 (24.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1533 KTLADVVEALIGVYYVEGGKDAA 1555
+ L + +EALIG Y++GG AA
Sbjct: 111 RNLENALEALIGAIYLDGGFTAA 133
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 132 (51.5 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 81/312 (25%), Positives = 132/312 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEV--GCPSRPACVPES------V 1586
+A+ EALIG Y+EG + A L + + D +V P P + ES +
Sbjct: 1002 MANCFEALIGAVYLEGSLEEAKQLFGRLLFN-DKDLRDVWLNYPLHPLQLQESNTDRQLI 1060
Query: 1587 LRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDHLI 1641
S L E+A+ + F LL A T + + ++ QR+EF+GD+++ +
Sbjct: 1061 ETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVA 1120
Query: 1642 TKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEV 1701
T++LF + + G LT LR++ VNN A+VA + L Q +F +
Sbjct: 1121 TEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE-------------LGMQ--EFA--I 1163
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPMVT 1759
+ K L K L D++ES A+++D + V F P L +
Sbjct: 1164 TNDKTK---RPVAL----RTKTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFIL 1216
Query: 1760 PETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGVAQ 1808
+ P +LQ+ C + EG E YK ++ TV VY G ++G +
Sbjct: 1217 NQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK 1275
Query: 1809 NPQKKMAQKLAA 1820
P + A+ AA
Sbjct: 1276 GPSIQQAEMGAA 1287
Score = 111 (44.1 bits), Expect = 0.00060, Sum P(3) = 0.00060
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q +
Sbjct: 1106 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1161
Score = 74 (31.1 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 928 ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984
Score = 74 (31.1 bits), Expect = 0.00060, Sum P(3) = 0.00060
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 1243 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 1295
Score = 51 (23.0 bits), Expect = 0.00060, Sum P(3) = 0.00060
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 1174 LRTKTLADLLESFIAALYID 1193
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 37/128 (28%), Positives = 66/128 (51%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
L + L +F + LL A+TH S SG +RLEF+GD+VL +I L+
Sbjct: 7 LMERLGHQFNNLELLKIALTHCS---SGADNNERLEFLGDSVLGFIIASELYQRRPQARE 63
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHG---SSALDRQIRDFVKEVLEELLKPGFN 1711
G L+ +RA+ VN + A+++ K ++ +L+ G + ++ R + + LE ++ +
Sbjct: 64 GDLSRMRASMVNGDELAQMSTKLGINEYLQLGVGEQKSGGKRRRSILADALEAIVGAIYI 123
Query: 1712 SFGLGDCK 1719
GL C+
Sbjct: 124 DAGLETCR 131
Score = 112 (44.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQ 1460
ER E LGD+ L ++++ L+ + PQ EG L+RMR MV+ L Q + G+ Y+Q
Sbjct: 36 ERLEFLGDSVLGFIIASELYQRRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQ 93
Score = 72 (30.4 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 32/129 (24%), Positives = 58/129 (44%)
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTS--VVWQVFQPLLDPMVT 1759
+ E L+ G G + +L D +E+I GAI++D+G +T V + +D +
Sbjct: 88 INEYLQLGVGEQKSGGKRRRSILADALEAIVGAIYIDAGLETCRRCVLNWYGERVDDL-- 145
Query: 1760 PETLPMHPVREL-QERCQQQAEGLE-YKASRSGNLA----TVEVYIDGVQVGV-AQNPQK 1812
+ P + L QE Q + L Y+ +G TV Y+ G+ N +
Sbjct: 146 SKLSPKKDAKSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTR 205
Query: 1813 KMAQKLAAR 1821
+ A+++AA+
Sbjct: 206 RRAEQIAAK 214
Score = 66 (28.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 1535 LADVVEALIGVYYVEGGKDAANH-LMKWIGIQVE 1567
LAD +EA++G Y++ G + ++ W G +V+
Sbjct: 110 LADALEAIVGAIYIDAGLETCRRCVLNWYGERVD 143
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 126 (49.4 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 50/163 (30%), Positives = 70/163 (42%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASR----PSSGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650
LE ++ +F DR L EA+TH S S V +RLEF GDA+L I K L Y
Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78
Query: 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSS---ALDRQIRDFVKEVLEELLK 1707
G L +++A V E A +A +L +LR G + R R + LE LL
Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSYLRLGRGEERSGGRHRRSLLANALEALLA 138
Query: 1708 PGFNSFGLGDCK--APKVLGDIVESIAGAIFLDSGRDTSVVWQ 1748
+ G+ + G + +A I GRD +Q
Sbjct: 139 AMYLDGGMAPVERLVDAWFGPRLAGVAAGI---KGRDFKTDFQ 178
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQAD 1462
ER E GDA L + + + L YP+ EG L RM+ +V L A + L SY++
Sbjct: 55 ERLEFFGDAILGFCIGKMLLRHYPESREGALARMKSALVGEETLADLAAAVELGSYLRLG 114
Query: 1463 R 1463
R
Sbjct: 115 R 115
Score = 57 (25.1 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926
+P Y V GPAH RFT A V G + G S K+A+ +AA LE L
Sbjct: 188 LPRYVLVDTSGPAHDLRFTVAAYVGERLLG---QGTGR---SKKEAEQAAARQCLERL 239
Score = 54 (24.1 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMK-WIG 1563
LA+ +EAL+ Y++GG L+ W G
Sbjct: 129 LANALEALLAAMYLDGGMAPVERLVDAWFG 158
>MGI|MGI:1919236 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919236 GO:GO:0005739
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 GO:GO:0042645
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
HOGENOM:HOG000008689 HOVERGEN:HBG081424 OrthoDB:EOG42RD7H
EMBL:AK010396 EMBL:AK163480 EMBL:BC120556 EMBL:BC120582
IPI:IPI00109544 RefSeq:NP_082314.2 UniGene:Mm.307515
ProteinModelPortal:Q9CWT6 SMR:Q9CWT6 PhosphoSite:Q9CWT6
PRIDE:Q9CWT6 Ensembl:ENSMUST00000058579 GeneID:71986 KEGG:mmu:71986
GeneTree:ENSGT00670000098028 InParanoid:Q0VBM0 OMA:LCSKGWK
NextBio:335138 Bgee:Q9CWT6 CleanEx:MM_DDX28 Genevestigator:Q9CWT6
GermOnline:ENSMUSG00000045538 Uniprot:Q9CWT6
Length = 540
Score = 100 (40.3 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 53/205 (25%), Positives = 84/205 (40%)
Query: 248 GYWERDRLGSNGMVFRLGSWEA-DHNRAGKEANGI-NQECNGK---VGKKSEA----KEK 298
G WER L S G R + R +EA + N G +G + +E
Sbjct: 85 GRWERAPLASRGWKHRRSRQDHFSIERVQQEAPALRNLSSRGSFVDLGLEPRVLLALQEA 144
Query: 299 MPEE-QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLA- 354
+PE Q Q + + ++ + ETG+GKTL +L L + + ++ A
Sbjct: 145 VPEVVQPTSVQSKTIPPLLRGRHLLCAAETGSGKTLSYLLPLFQRLLRGSDLDSRSFTAP 204
Query: 355 --VFLVPKVPLVYQQAEVIREQTGYV---VGHYCGEMGQDFWDAQRWQREFDTKQVLVMT 409
+ LVP L Q V + GY+ V G +G Q ++R VLV T
Sbjct: 205 RGLVLVPSRELAEQVQAVAQSLGGYLGLQVIELGGGLGMSRLKLQLYRRP--AADVLVAT 262
Query: 410 AQILLNILRHSIIKMEAINLLILDE 434
L L+ +I ++ +N ++LDE
Sbjct: 263 PGALWKALKSQLISLQHLNFIVLDE 287
Score = 96 (38.9 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 26/82 (31%), Positives = 37/82 (45%)
Query: 747 LSFVKSASLIGHNNSQEMRTFQMQETIAK-FRDGRVTLLVATSVAEEGLDIRQCNVVIRF 805
L ++ I H Q M+ I + F+ G +LV T +A GLD VVI +
Sbjct: 413 LGYILDDHKIQHLRLQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSVHVEVVINY 472
Query: 806 DLAKTVLAYIQSRGRARKPGSD 827
D T+ YI GR + GS+
Sbjct: 473 DFPPTLQDYIHRAGRVGRVGSE 494
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 114 (45.2 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 1373 QLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEG 1431
+L K+ Y +L +ALT S + ER E LGD+ L +V++ L+ K+P+ EG
Sbjct: 10 RLTKKLGYEFNEPLLLVQALTHRSAKGAH-NERLEFLGDSILGFVIAEALYDKFPKHDEG 68
Query: 1432 QLTRMRQQMVSNLVLYQYA 1450
LTRMR +V + L + A
Sbjct: 69 DLTRMRSSLVKGVTLAEVA 87
Score = 107 (42.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 1595 LEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPP 1654
L L +F + LLV+A+TH R + G +RLEF+GD++L +I + L+ +
Sbjct: 11 LTKKLGYEFNEPLLLVQALTH--RSAKGAH-NERLEFLGDSILGFVIAEALYDKFPKHDE 67
Query: 1655 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALD---RQIRDFVKEVLEELLKPGFN 1711
G LT +R++ V A VA L L G L +++ +E ++ +
Sbjct: 68 GDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEAIIGAVYL 127
Query: 1712 SFGLGDCKA 1720
+ CKA
Sbjct: 128 DSNIECCKA 136
Score = 64 (27.6 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 1847 KNGTQTFTRQT-LNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVG 1905
K G + +T L + R P+P Y + G +H + FT VR T+ E V
Sbjct: 150 KPGNEQKDPKTRLQEFLQGRKIPLPTYEVIDTTGQSHNQEFT--VRCQTSV---ISEVVI 204
Query: 1906 EPMPSVKKAKDSAAVLLLELLNK 1928
S +KA+ AA +L L+ K
Sbjct: 205 AKGTSRRKAEQEAAQQILALIEK 227
Score = 62 (26.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 26/85 (30%), Positives = 40/85 (47%)
Query: 1695 RDF-VKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT--SVVWQVFQ 1751
RDF + E L +L PG G +L D +E+I GA++LDS + +++ F+
Sbjct: 88 RDFNLGECL--ILGPG--ELKSGGHHRESILEDAIEAIIGAVYLDSNIECCKALILSWFE 143
Query: 1752 PLLDPMVTPETLPMHPVRELQERCQ 1776
L ++ P P LQE Q
Sbjct: 144 RRL-MVIKPGNEQKDPKTRLQEFLQ 167
Score = 47 (21.6 bits), Expect = 9.8e-06, Sum P(3) = 9.8e-06
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHL-MKW 1561
L D +EA+IG Y++ + L + W
Sbjct: 114 LEDAIEAIIGAVYLDSNIECCKALILSW 141
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 132 (51.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 80/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 1039 MANCFEALIGAVYLEGSLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 1095
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L E+A+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 1096 LIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 1155
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 1156 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 1211
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 1212 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 1251
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 1252 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 1310
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 1311 GKGPSIQQAEMGAA 1324
Score = 115 (45.5 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSY 1458
+R E LGD+ ++ V + +LF+ +P HEG LT +R +V+N + A G+Q Y
Sbjct: 1143 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198
Score = 75 (31.5 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021
Score = 74 (31.1 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1869 MPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
+PLY+ ++ GP+HA+ +T AV KG C G+ PS+++A+ AA+ LE N
Sbjct: 1280 IPLYKTLQTVGPSHARTYTVAVYF----KGERIGC-GKG-PSIQQAEMGAAMDALEKYN 1332
Score = 51 (23.0 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 1530 LSSKTLADVVEALIGVYYVE 1549
L +KTLAD++E+ I Y++
Sbjct: 1211 LRTKTLADLLESFIAALYID 1230
Score = 47 (21.6 bits), Expect = 9.9e-06, Sum P(3) = 9.9e-06
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 267 WEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEE 302
WE + +R ++ G +E N K+ EA+E PE+
Sbjct: 364 WEEEKDR-WSDSQGSGKEKNYTSIKEKEAEEVPPEK 398
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 113 (44.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 38/147 (25%), Positives = 74/147 (50%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K+++L+++L + ++TE IIFV + + L + +L + + S+ L G N Q+
Sbjct: 231 KLEALVRVL-EVENTEGI--IIFVRTRNSCVELAE---KLEARGYA-SSPLHGDMN-QQA 282
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R + + + ++G++ +L+AT VA GLD+ + V+ +D+ AY+ GR +
Sbjct: 283 R----ERAVEQLKNGKLDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRA 338
Query: 825 GSD--YILMIERGNLSHATFLRNARNS 849
G IL + + + A NS
Sbjct: 339 GRTGMAILFVTSREMRMLRTIERATNS 365
Score = 83 (34.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 41/190 (21%), Positives = 80/190 (42%)
Query: 295 AKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKML 353
A +++ E+ P Q ++ K+ + +TG GKT L + N + Q +
Sbjct: 20 ALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFAL---PLLNKVTSQTTPQI 76
Query: 354 AVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDT----KQVLVMT 409
V L P L Q AE ++ + + Q Q++ + QV+V T
Sbjct: 77 LV-LAPTRELAVQVAEAFSSYAKFMKNFHV----LPIYGGQSMQQQLNALKRGPQVIVGT 131
Query: 410 AQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS 469
+++ +R +K+E + L+LDE +K + HT +++ ++F T
Sbjct: 132 PGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPP-QRQLALFSATM- 189
Query: 470 PVNLKGVSSQ 479
P +K V+++
Sbjct: 190 PEQIKRVANK 199
>UNIPROTKB|I3LB32 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RARRDHF GeneTree:ENSGT00670000098028 EMBL:FP565347
RefSeq:XP_003355824.1 Ensembl:ENSSSCT00000027762 GeneID:100621490
KEGG:ssc:100621490 Uniprot:I3LB32
Length = 540
Score = 116 (45.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 56/213 (26%), Positives = 86/213 (40%)
Query: 624 QLDVKFQESYLSKVVSLLQ-CELVEGAVSKKD-----AKVVDSENGFVEGGTNEIEEGEL 677
+ D ES+L V +L+ + EG KD A++V F EG + + +
Sbjct: 287 EADTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKAQLVLVGATFPEGVSQLLSKAAC 346
Query: 678 LDS--HVVSGGEH-VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAA 734
LDS + S H + + K KV L++IL QH +R
Sbjct: 347 LDSLTTITSSKLHCIMPHVKQTFMRLKGAEKVTELVQILK--QHDRAYRT----GSAGTV 400
Query: 735 LVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK-FRDGRVTLLVATSVAEEG 793
LV + + L ++ I H Q M+ I + F+ G +L+ T +A G
Sbjct: 401 LVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQRGSQDILLCTDIASRG 460
Query: 794 LDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
LD Q +VI +D T+ YI GR + GS
Sbjct: 461 LDSTQVELVINYDFPLTLQDYIHRAGRVGRVGS 493
Score = 78 (32.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 318 KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLA---VFLVPKVPLVYQQAEVIRE 373
++ + ETG+GKTL +L L++ + + ++ A + LVP L +Q + +
Sbjct: 166 RHILCAAETGSGKTLGYMLPLLQRLLGQPSLDSCRIPAPRGLVLVPSRELA-EQVRAVAQ 224
Query: 374 QTGYVVGHYCGEMGQDFWDAQ-RWQ-REFDTKQVLVMTAQILLNILRHSIIKMEAINLLI 431
G +G E+G ++ R Q + VLV T L L+ +I +E ++ L+
Sbjct: 225 PLGSSLGLQVRELGGGHGMSRIRLQLSKQPPADVLVATPGALWKGLKSQLISLEQLSFLV 284
Query: 432 LDE 434
LDE
Sbjct: 285 LDE 287
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 97 (39.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782
+A+IF++ A K+ ++L V A G SQ +R ++ + F+ G+V
Sbjct: 245 QALIFIQTKHGAA---KLVSQLEKRGIVAEAFHSGR--SQAIR----EQLLIDFKAGKVP 295
Query: 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
LVAT V G+DI VI +DL YI GR + G+
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGN 339
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 49/203 (24%), Positives = 95/203 (46%)
Query: 318 KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376
KN +A +TG GKT VL L+ + + + K++ ++ L P L Q + I +
Sbjct: 39 KNVLAAAQTGTGKTASFVLPLLHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAK 98
Query: 377 YV-VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435
Y+ + G D A + +R + +LV T LL++ I+ + +++L+LDE
Sbjct: 99 YLPLTAMAMYGGVDA--APQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEA 156
Query: 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVS-SQVDCAIKI----CNLE 490
+ + ++ ++++ +F T S +K ++ + + AI+I N
Sbjct: 157 DRMLDMG-FIEDINNIIEKLPEQRQNLLFSATLSK-QVKALAKTAIPDAIEIEISRKNAA 214
Query: 491 S-KLDSVVCTI-KDRKE-LEKHV 510
S ++D + T+ KDRK L H+
Sbjct: 215 STQIDQWLTTVDKDRKSALLSHL 237
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 97 (39.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782
+A+IF++ A K+ ++L V A G SQ +R ++ + F+ G+V
Sbjct: 245 QALIFIQTKHGAA---KLVSQLEKRGIVAEAFHSGR--SQAIR----EQLLIDFKAGKVP 295
Query: 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
LVAT V G+DI VI +DL YI GR + G+
Sbjct: 296 FLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGN 339
Score = 95 (38.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 49/203 (24%), Positives = 95/203 (46%)
Query: 318 KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376
KN +A +TG GKT VL L+ + + + K++ ++ L P L Q + I +
Sbjct: 39 KNVLAAAQTGTGKTASFVLPLLHRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAK 98
Query: 377 YV-VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435
Y+ + G D A + +R + +LV T LL++ I+ + +++L+LDE
Sbjct: 99 YLPLTAMAMYGGVDA--APQKKRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEA 156
Query: 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVS-SQVDCAIKI----CNLE 490
+ + ++ ++++ +F T S +K ++ + + AI+I N
Sbjct: 157 DRMLDMG-FIEDINNIIEKLPEQRQNLLFSATLSK-QVKALAKTAIPDAIEIEISRKNAA 214
Query: 491 S-KLDSVVCTI-KDRKE-LEKHV 510
S ++D + T+ KDRK L H+
Sbjct: 215 STQIDQWLTTVDKDRKSALLSHL 237
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 23/51 (45%), Positives = 29/51 (56%)
Query: 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
KF+ G + LVAT VA GLDI +VVI +D+ AYI GR + G
Sbjct: 330 KFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAG 380
Score = 92 (37.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 49/218 (22%), Positives = 90/218 (41%)
Query: 287 GKVGKKSEAKEKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDL 345
G + + EA EK+ + P Q + + K++ I +TG+GKT L + +L
Sbjct: 52 GVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFAL---PVIQEL 108
Query: 346 QRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEM--GQDF-WDAQRWQREFDT 402
AV L P L YQ +E E G +G + G D A ++
Sbjct: 109 WNNPSPFFAVVLAPTRELAYQISEQF-EAIGGSIGVRSVVIVGGMDMVTQAVALSKK--- 164
Query: 403 KQVLVMTAQILLNILRHSI-IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP 461
VLV T L++ L ++ ++ + LI+DE + + ++ + E+R
Sbjct: 165 PHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMD-FGPIIDKILKIIPHERRT 223
Query: 462 SVFG--MTASPVNLKGVSSQVDCAIKICNLESKLDSVV 497
+F MT+ L+ S + + + S +D+++
Sbjct: 224 LLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLI 261
>TAIR|locus:2198898 [details] [associations]
symbol:RTL1 "RNAse THREE-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001159 Pfam:PF00035 PROSITE:PS50137 SMART:SM00358
InterPro:IPR014720 EMBL:CP002684 GenomeReviews:CT485782_GR
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 EMBL:AC018849
EMBL:AK117343 EMBL:BT005219 IPI:IPI00546074 PIR:G96838
RefSeq:NP_178180.1 UniGene:At.33884 ProteinModelPortal:Q9M8N2
SMR:Q9M8N2 IntAct:Q9M8N2 EnsemblPlants:AT1G80650.1 GeneID:844404
KEGG:ath:AT1G80650 TAIR:At1g80650 eggNOG:NOG249826
HOGENOM:HOG000064708 InParanoid:Q9M8N2 OMA:CASKRWR PhylomeDB:Q9M8N2
ProtClustDB:CLSN2914440 Genevestigator:Q9M8N2 Uniprot:Q9M8N2
Length = 198
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 43/170 (25%), Positives = 64/170 (37%)
Query: 1752 PLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQ 1811
P LDP P PM Q+ E ++K N + +Q+
Sbjct: 25 PPLDPSSIPSMKPMAQDHH-NVGMQRFQEKTDFKFEEEDNAISS---FSNIQIDPNSTRS 80
Query: 1812 KKMAQKLAARNXXXXXXXXXXXXXXXXGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPL 1871
+ +KLA + D+ K R+ ++ L+++C + W P+
Sbjct: 81 ISLEKKLAPKPDEEHTTTTKPISK----DDESKTRRGSAKS----VLHEMCASKRWRPPV 132
Query: 1872 YRCVREGGPAHAKRFTYAVRVNTTDK-GWTD-ECVGEPMPSVKKAKDSAA 1919
Y C GP H + FTY V V D G T EC G+P K A + AA
Sbjct: 133 YECCNVDGPCHLRLFTYKVMVEIRDSSGKTVLECFGDPRRKKKAAAEHAA 182
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 136 (52.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 81/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 1034 MANCFEALIGAVYLEGSLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 1090
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L EDA+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 1091 LIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 1150
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 1151 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 1206
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 1207 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 1246
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 1247 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 1305
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 1306 GKGPSIQQAEMGAA 1319
Score = 75 (31.5 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 960 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1016
Score = 40 (19.1 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 265 GSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEE 302
G WE + +R + G +GK + KEK PEE
Sbjct: 355 GRWEEEKDR-WSDIPG-----SGKEKNYTSIKEKEPEE 386
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 107 (42.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 38/125 (30%), Positives = 54/125 (43%)
Query: 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760
K KV L + K Q + AIIF + +L K EL SF A + +
Sbjct: 280 KERQKVHCLNTLFAKLQINQ---AIIFCNSITRVELLAKKITELGYSSFYIHARM---SQ 333
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
+ R F FR+G LV++ + G+DI+ NVVI FD K Y+ GR
Sbjct: 334 THRNRVFH------DFRNGACRCLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGR 387
Query: 821 ARKPG 825
+ + G
Sbjct: 388 SGRYG 392
Score = 82 (33.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 37/175 (21%), Positives = 73/175 (41%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKML-AVFLVP 359
E+ P Q + + A KN +A + G GKT + + CN +K + + LVP
Sbjct: 81 EKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLEKCNT----HKNFIQGLILVP 136
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH 419
L Q + +I+E G + C + R ++ +L T +L++
Sbjct: 137 TRELALQTSAMIKE-LGKHMKVQCMVTTGGTSLREDIMRLYNVVHILCGTPGRILDLANK 195
Query: 420 SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLK 474
+ + +++++DE + + ++ E KEK+ ++ T PV +K
Sbjct: 196 DVANLSGCHIMVMDEADKLLSPE-FQPIVEELMKFLPKEKQILMYSATF-PVTVK 248
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 104 (41.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 27/103 (26%), Positives = 57/103 (55%)
Query: 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIE 833
F+ G + +L+AT +A GLDI + VVI F+L ++ Y+ GR+ + G I +I+
Sbjct: 301 FKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLID 360
Query: 834 RGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVD 876
+ H + + + ++ L++E +E + + + S +++V+
Sbjct: 361 HEDYHHFSVIE--KKNKFRLKREQVEGFEAAEITGDS-ILAVE 400
Score = 85 (35.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 41/162 (25%), Positives = 75/162 (46%)
Query: 318 KNTIAFLETGAGKTL-IAVLLIRSICNDLQR--QNKK---MLAVFLVPKVPLVYQQAEVI 371
++ IA TG+GKT A+ +++ + D+ +N K + + LVP L Q A+ I
Sbjct: 46 RDLIAGANTGSGKTATFALPMLQKLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSI 105
Query: 372 REQTGYVVGHYCGEM------GQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKME 425
+ Y V H+ GE+ G + Q +LV T LL+++ + IK++
Sbjct: 106 KS---YAV-HFNGEIKTLAVFGGVSVNIQMLALRGGV-DILVATPGRLLDLISSNAIKLD 160
Query: 426 AINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467
+ L+LDE + ++ ++ T K+K+ +F T
Sbjct: 161 KVKTLVLDEADRMLSLG-FTEELTALLALTPKKKQTLLFSAT 201
>RGD|1311976 [details] [associations]
symbol:Ddx28 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 28"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311976
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0042645
EMBL:CH473972 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:55794
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
IPI:IPI00870370 RefSeq:NP_001102368.1 UniGene:Rn.140812
Ensembl:ENSRNOT00000026817 GeneID:364995 KEGG:rno:364995
UCSC:RGD:1311976 NextBio:686447 Uniprot:D4A7Q5
Length = 540
Score = 104 (41.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 38/128 (29%), Positives = 56/128 (43%)
Query: 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760
K T KV LI+IL QH + +A E LV + + L ++ I H
Sbjct: 373 KGTEKVTELIQILK--QHDKANKA----EPSGTVLVFCNSASTVNWLGYILDDHKIQHLR 426
Query: 761 SQEMRTFQMQETIAK-FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819
Q M+ I + F+ G +LV T +A GLD +V+ +D T+ YI G
Sbjct: 427 LQGQMPASMRAGIFQSFQKGSQNILVCTDIASRGLDSIHVEMVVNYDFPPTLQDYIHRAG 486
Query: 820 RARKPGSD 827
R + GS+
Sbjct: 487 RVGRVGSE 494
Score = 87 (35.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 48/204 (23%), Positives = 86/204 (42%)
Query: 248 GYWERDRLGSNGMVFRLGSWEA-DHNRAGKEANGI-NQECNGK---VGKKSE---AKEKM 299
G WER L S G R + R +EA + N G +G + A +K
Sbjct: 85 GRWERAPLASRGWKHRRSRQDHFSIERVQQEAPAMRNLSSRGNFVDLGLEPRVLLALQKA 144
Query: 300 PEEQARPYQLD---VLEQAKKKNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLA- 354
E +P + + + ++ + ETG+GKTL +L L + + + ++ A
Sbjct: 145 VPEIVQPTSVQSKTIPPLLRGRHILCAAETGSGKTLSYLLPLFQRLLKGPELDSRSSTAP 204
Query: 355 --VFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDF-WDAQRWQR-EFDTKQVLVMTA 410
+ LVP L +Q + + + G + E+G + + Q ++ + VLV T
Sbjct: 205 RGLVLVPSRELA-EQVQAVAQSLGRYLDLQVIELGGGLGMNRLKLQLGKWPSADVLVATP 263
Query: 411 QILLNILRHSIIKMEAINLLILDE 434
L L+ +I + +N ++LDE
Sbjct: 264 GALWKALKSQLISLHHLNFIVLDE 287
>UNIPROTKB|Q71YU6 [details] [associations]
symbol:LMOf2365_1746 "Helicase domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017262
GenomeReviews:AE017262_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:YP_014341.1 ProteinModelPortal:Q71YU6
STRING:Q71YU6 GeneID:2799880 KEGG:lmf:LMOf2365_1746 PATRIC:20324779
HOGENOM:HOG000268811 OMA:MTIATPF ProtClustDB:CLSK564571
Uniprot:Q71YU6
Length = 442
Score = 118 (46.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 712 ILLKYQHTEDFRAIIFV-ERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQ 770
+L + H +D R ++FV ++ ++L K+ + VK+A + G E+R + +
Sbjct: 226 LLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDK-----VKAAGIHG-----EIRKEKRK 275
Query: 771 ETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+ + F+ G +T L+ T VA GLDI VI +DLA + Y GR + G
Sbjct: 276 KYLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRMG 330
Score = 70 (29.7 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 34/150 (22%), Positives = 62/150 (41%)
Query: 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378
+ +A TG GKT+ L ++ K V L P LV Q EVIR
Sbjct: 38 DVLAVSPTGTGKTVAYAL---PTLEKIEAIPKTQWLV-LAPSHELVMQITEVIRSWLPSD 93
Query: 379 VGHYCGEMGQDFWDAQRWQREFDTK-QVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437
+G + +R + K Q++V + L +++ IKM I + LDEC
Sbjct: 94 ELTVISLIGGA--NVKRQIEKLKKKPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQ 151
Query: 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467
+++ + + E + ++++ ++ T
Sbjct: 152 LLRQENFKSTL-EIVESAVRDRQLTLVSAT 180
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 109 (43.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 1599 LKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLT 1658
L +FK+ LL +A+TH S + +RLEF+GD++L +I+ L+ + G L+
Sbjct: 14 LGYEFKNLDLLTQALTHRSAANKH---NERLEFLGDSILSIVISDALYHQFPKATEGDLS 70
Query: 1659 DLRAAAVNNENFARVAVKHKLHVHLRHGSSAL 1690
+RA V + +A KL +L G L
Sbjct: 71 RMRATLVRGDTLTLIAQAFKLGDYLFLGPGEL 102
Score = 92 (37.4 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 1387 ILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446
+ +ALT S ER E LGD+ L V+S L+ ++P+ EG L+RMR +V L
Sbjct: 24 LTQALTHRSAANKH-NERLEFLGDSILSIVISDALYHQFPKATEGDLSRMRATLVRGDTL 82
Query: 1447 YQYALSKGLQSYI 1459
A + L Y+
Sbjct: 83 TLIAQAFKLGDYL 95
Score = 68 (29.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 1868 PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927
P+P Y+ + G AH + FT R++ + +G S +KA+ AA +LELL
Sbjct: 171 PLPDYQVINIEGDAHDQTFTVECRIDDLSQS----VIGVAS-SRRKAEQIAAAQVLELLK 225
Query: 1928 K 1928
K
Sbjct: 226 K 226
Score = 63 (27.2 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 34/118 (28%), Positives = 55/118 (46%)
Query: 1716 GDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERC 1775
G + +L D VE+I GAI+LDS D V Q+ + E P ++ +
Sbjct: 105 GGFRRESILADAVEAIIGAIYLDS--DLEVCRQLLLNWYAERLA-EIQPGINQKDAKTLL 161
Query: 1776 QQQAEGL-----EYKASR-SGNLA----TVEVYIDGVQ---VGVAQNPQKKMAQKLAA 1820
Q+ +GL +Y+ G+ TVE ID + +GVA + +K A+++AA
Sbjct: 162 QEYLQGLKKPLPDYQVINIEGDAHDQTFTVECRIDDLSQSVIGVASSRRK--AEQIAA 217
Score = 55 (24.4 bits), Expect = 7.7e-05, Sum P(3) = 7.7e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLM-KW 1561
LAD VEA+IG Y++ + L+ W
Sbjct: 113 LADAVEAIIGAIYLDSDLEVCRQLLLNW 140
>UNIPROTKB|A7YWQ8 [details] [associations]
symbol:DDX28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0042645 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:55794 HOGENOM:HOG000008689 HOVERGEN:HBG081424
OMA:RARRDHF OrthoDB:EOG42RD7H GeneTree:ENSGT00670000098028
EMBL:DAAA02046690 EMBL:BC134724 IPI:IPI00689474
RefSeq:NP_001098892.1 UniGene:Bt.3066 Ensembl:ENSBTAT00000005622
GeneID:539411 KEGG:bta:539411 InParanoid:A7YWQ8 NextBio:20877971
Uniprot:A7YWQ8
Length = 545
Score = 109 (43.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 56/214 (26%), Positives = 86/214 (40%)
Query: 624 QLDVKFQESYLSKVVSLLQ-CELVEGAVSKKD-----AKVVDSENGFVEGGTNEIEEGEL 677
++D ES+L V +L+ + EG KD A++V F EG + +
Sbjct: 287 EVDTLLDESFLELVDYILEKSHIAEGPADLKDPFNPKAQLVLVGATFPEGVGQLLSKVAS 346
Query: 678 LDS--HVVSGGEH-VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAA 734
LDS + S H + + K KV L++IL QH R
Sbjct: 347 LDSLTTITSSKLHCIMPHVKQTFMRLKGAEKVTELVQILK--QHDRAHRT----GSTGTV 400
Query: 735 LVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK-FRDGRVTLLVATSVAEEG 793
LV + + L ++ I H Q M+ I + F+ G +L+ T +A G
Sbjct: 401 LVFCNSSSTVNWLGYILDDHKIQHLRLQGQMPASMRAGIFQSFQKGSRDILLCTDIASRG 460
Query: 794 LDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827
LD Q +VI +D T+ YI GR + GS+
Sbjct: 461 LDSTQVELVINYDFPLTLQDYIHRAGRVGRVGSE 494
Score = 81 (33.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 50/204 (24%), Positives = 84/204 (41%)
Query: 248 GYWERDRLGSNGMVFRLGSWEA-DHNRAGKEANGI-NQECNGK---VGKKSEAKEKMPE- 301
G WE L S G R + RA EA + N G +G + + E
Sbjct: 85 GRWEAAPLVSRGWKHRRARQDYFSIERAQHEAPALRNLSSKGSFADLGLEPRVLSALQEA 144
Query: 302 --EQARPYQLD---VLEQAKKKNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLA- 354
E RP + + + ++ + ETG+GKTL +L L++ + ++ A
Sbjct: 145 APEVVRPTTVQSSTIPPLLRGRHILCAAETGSGKTLGYMLPLLQRLLGQPSLYTSRIPAP 204
Query: 355 --VFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ-RWQ-REFDTKQVLVMTA 410
+ LVP L +Q + + G +G E+G ++ R Q + +VLV T
Sbjct: 205 RGLVLVPSRELA-EQVRAVAQPLGSSLGLRVQELGGGHGMSRVRLQLSKHPPAEVLVATP 263
Query: 411 QILLNILRHSIIKMEAINLLILDE 434
L L+ +I + ++ L+LDE
Sbjct: 264 GALWKALKGQLISLAQLSFLVLDE 287
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 118 (46.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
SA+ I N SQ RT + +A F+ G V +LVAT +A GLDI Q V+ FDL
Sbjct: 269 SAAAIHGNKSQGART----KALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVP 324
Query: 812 LAYIQSRGRARKPGS 826
Y+ GR + G+
Sbjct: 325 EDYVHRIGRTGRAGA 339
Score = 71 (30.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 29/118 (24%), Positives = 52/118 (44%)
Query: 318 KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376
K+ +A +TG GKT L L+ + + ++ + A+ L P L Q E +
Sbjct: 39 KDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGK 98
Query: 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
Y+ G + Q + VLV T LL++++ + +K + +L+LDE
Sbjct: 99 YLPLRSAVVFGGVPINPQINKLRHGV-DVLVATPGRLLDLVQQNAVKFNQLEILVLDE 155
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 115 (45.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 55/221 (24%), Positives = 100/221 (45%)
Query: 619 ERANYQLDVKFQESYLSKVVSLLQCE-----LVEGAVSKKDAKVVDSENGFVEGGTNEIE 673
+ A+ +D+ F++ L+KV+ L E ++G + + + + ++
Sbjct: 328 DEADRMIDMGFEKD-LNKVLDKLPTEKQLSSTIDGRIFHLEKRSTMMFTATISPTVEKLT 386
Query: 674 EGELLDS---HVVSGGEHVDVIIGA----AVADGKVTPKVQSLIKILLKYQH-TEDFRAI 725
+ L+D ++ GE +D I + + A + T K LIKI+ + TE+ I
Sbjct: 387 KKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEAT-KFNKLIKIIRSHWRVTENPLII 445
Query: 726 IFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLV 785
IF V + EL S + + + + G + SQ+MR ++ I FR+ +L+
Sbjct: 446 IFAN---FKHVCDSLSQELSS-NDINNVVIHG-SKSQDMR----EQAITNFRNHESEVLI 496
Query: 786 ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
AT VA G+DI +VI + + K YI GR + G+
Sbjct: 497 ATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGN 537
Score = 75 (31.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 35/134 (26%), Positives = 60/134 (44%)
Query: 316 KKKNTIAFLETGAGKTL---IAVL-LIRSICNDLQRQNK---KMLAVFLVPKVPLVYQ-- 366
KK++ + ETG+GKTL I VL I SI + + K + + + L P L Q
Sbjct: 204 KKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQIT 263
Query: 367 -QAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKME 425
+AE ++ GY V G G + D + + ++V T L++ + I+ +
Sbjct: 264 KEAEKFCKKLGYQVLPIIG--GHHYQDTIN-KIDQTGVHLIVATPGRLVDSIERKIVDLS 320
Query: 426 AINLLILDECHHAV 439
L++DE +
Sbjct: 321 KCYCLVMDEADRMI 334
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 115 (45.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 55/221 (24%), Positives = 100/221 (45%)
Query: 619 ERANYQLDVKFQESYLSKVVSLLQCE-----LVEGAVSKKDAKVVDSENGFVEGGTNEIE 673
+ A+ +D+ F++ L+KV+ L E ++G + + + + ++
Sbjct: 328 DEADRMIDMGFEKD-LNKVLDKLPTEKQLSSTIDGRIFHLEKRSTMMFTATISPTVEKLT 386
Query: 674 EGELLDS---HVVSGGEHVDVIIGA----AVADGKVTPKVQSLIKILLKYQH-TEDFRAI 725
+ L+D ++ GE +D I + + A + T K LIKI+ + TE+ I
Sbjct: 387 KKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEAT-KFNKLIKIIRSHWRVTENPLII 445
Query: 726 IFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLV 785
IF V + EL S + + + + G + SQ+MR ++ I FR+ +L+
Sbjct: 446 IFAN---FKHVCDSLSQELSS-NDINNVVIHG-SKSQDMR----EQAITNFRNHESEVLI 496
Query: 786 ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
AT VA G+DI +VI + + K YI GR + G+
Sbjct: 497 ATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGN 537
Score = 75 (31.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 35/134 (26%), Positives = 60/134 (44%)
Query: 316 KKKNTIAFLETGAGKTL---IAVL-LIRSICNDLQRQNK---KMLAVFLVPKVPLVYQ-- 366
KK++ + ETG+GKTL I VL I SI + + K + + + L P L Q
Sbjct: 204 KKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQIT 263
Query: 367 -QAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKME 425
+AE ++ GY V G G + D + + ++V T L++ + I+ +
Sbjct: 264 KEAEKFCKKLGYQVLPIIG--GHHYQDTIN-KIDQTGVHLIVATPGRLVDSIERKIVDLS 320
Query: 426 AINLLILDECHHAV 439
L++DE +
Sbjct: 321 KCYCLVMDEADRMI 334
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 103 (41.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 35/154 (22%), Positives = 67/154 (43%)
Query: 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779
+ F A+IF V A K++ L L + A L G ++ + + + FR+
Sbjct: 243 QPFLAVIFCRTKVRA---SKLYDNLKGLGY-NCAELHG-----DIPQAKRERVMKSFREA 293
Query: 780 RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGNL 837
++ L+AT VA GLD+ V +D+ + V +YI GR + G I + +
Sbjct: 294 KIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Query: 838 SHATFLRNARNSEETLRKEAIERTDLSHLKDTSR 871
H + + +++E IE+ + + + +
Sbjct: 354 KHLEEIEKTLGAP--IQREIIEQPKIKRVDENGK 385
Score = 84 (34.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 53/230 (23%), Positives = 104/230 (45%)
Query: 280 GINQECNGKVGKKSEAKEKMP-EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLI 338
GI++ N + +++ E P +E+A P L K+ I +TG GKTL VL
Sbjct: 11 GISETFNHTL-RENGITEATPIQEKAIPVILS------GKDIIGQAKTGTGKTLAFVL-- 61
Query: 339 RSICNDLQRQNKKMLAVFLVPKVPLVYQ-QAEV----IREQTGYVVGHYCGEMGQDFWDA 393
I + ++ + A+ + P L Q E+ ++ + V+ Y G GQD A
Sbjct: 62 -PILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIY-G--GQDV--A 115
Query: 394 QRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453
Q+ ++ ++V T LL+ +R I + ++ ++LDE + + + +
Sbjct: 116 QQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLY-FGFLYDIEDILD 174
Query: 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDR 503
T K+ +F T P ++K ++ + ++ ++S+ + V TI+ R
Sbjct: 175 ETPGSKQTMLFSATI-PKDIKKLAKRYMDEPQMIQVQSE-EVTVDTIEQR 222
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 103 (41.3 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 35/154 (22%), Positives = 67/154 (43%)
Query: 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779
+ F A+IF V A K++ L L + A L G ++ + + + FR+
Sbjct: 243 QPFLAVIFCRTKVRA---SKLYDNLKGLGY-NCAELHG-----DIPQAKRERVMKSFREA 293
Query: 780 RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGNL 837
++ L+AT VA GLD+ V +D+ + V +YI GR + G I + +
Sbjct: 294 KIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Query: 838 SHATFLRNARNSEETLRKEAIERTDLSHLKDTSR 871
H + + +++E IE+ + + + +
Sbjct: 354 KHLEEIEKTLGAP--IQREIIEQPKIKRVDENGK 385
Score = 84 (34.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 53/230 (23%), Positives = 104/230 (45%)
Query: 280 GINQECNGKVGKKSEAKEKMP-EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLI 338
GI++ N + +++ E P +E+A P L K+ I +TG GKTL VL
Sbjct: 11 GISETFNHTL-RENGITEATPIQEKAIPVILS------GKDIIGQAKTGTGKTLAFVL-- 61
Query: 339 RSICNDLQRQNKKMLAVFLVPKVPLVYQ-QAEV----IREQTGYVVGHYCGEMGQDFWDA 393
I + ++ + A+ + P L Q E+ ++ + V+ Y G GQD A
Sbjct: 62 -PILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIY-G--GQDV--A 115
Query: 394 QRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453
Q+ ++ ++V T LL+ +R I + ++ ++LDE + + + +
Sbjct: 116 QQLRKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQMLY-FGFLYDIEDILD 174
Query: 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDR 503
T K+ +F T P ++K ++ + ++ ++S+ + V TI+ R
Sbjct: 175 ETPGSKQTMLFSATI-PKDIKKLAKRYMDEPQMIQVQSE-EVTVDTIEQR 222
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 114 (45.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 30/100 (30%), Positives = 46/100 (46%)
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS- 826
Q + T+A FRDG +LVAT VA GLD+ +++I ++L ++ GR + G
Sbjct: 386 QRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKK 445
Query: 827 -DYILMIERGNLSHATFLRNARNSEET-LRKEAIERTDLS 864
IL+ + + S T L A+ER S
Sbjct: 446 GSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVERGSAS 485
Score = 76 (31.8 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 34/137 (24%), Positives = 58/137 (42%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTL-IAVLLIRSIC--NDLQRQNKKMLAVFL 357
E+ P Q VLE A + ++ I TG GKTL + +I I N + + L + L
Sbjct: 125 EKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVL 184
Query: 358 VPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
P L Q + RE + C G R Q ++ V V T +++++
Sbjct: 185 APTRELARQVEKEFRESAPSL-DTICLYGGTPIGQQMR-QLDYGV-DVAVGTPGRVIDLM 241
Query: 418 RHSIIKMEAINLLILDE 434
+ + + + ++LDE
Sbjct: 242 KRGALNLSEVQFVVLDE 258
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 116 (45.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K Q+LI +L +YQ + ++F+ A + K + + + +A+L G + Q +
Sbjct: 257 KAQALIALLKQYQWPQ---VLVFISARDDADAIAKRLVK----AGINAAALHGEKD-QTV 308
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R+ +T+A F+ R+ +LVAT + G+ + VVI DL + Y+ GR +
Sbjct: 309 RS----QTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARA 364
Query: 825 GSD--YILMIERGNLSHATFLRN 845
G+ I ++ G + + T +RN
Sbjct: 365 GAKGLAISLVCHGEMPNLTAIRN 387
Score = 70 (29.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 44/199 (22%), Positives = 82/199 (41%)
Query: 288 KVGKKSEAKEKMPEEQARP---YQLDVLEQAKKKNTIAFLETGAGKTLIAVL-LIRSICN 343
++G + ++ +P P QL + ++ +A +TG+GKT L L++ +
Sbjct: 21 ELGLNAALRKALPTRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQ 80
Query: 344 DLQRQNK-------KMLAVFLVPKVPLVYQQAEVIREQTGYV-------VGHYCGEMGQD 389
+ Q K LA+ LVP L Q +E + + + CG +
Sbjct: 81 QIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVA-- 138
Query: 390 FWDAQRWQREFDTK-QVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448
++ + K Q++V T LL++ S I ++AI L+LDE ++ + M
Sbjct: 139 ---LEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWP-DM 194
Query: 449 SEFYHTTSKEKRPSVFGMT 467
+ K K+ +F T
Sbjct: 195 QKLMAMMPKRKQTLLFSAT 213
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 116 (45.9 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 38/143 (26%), Positives = 71/143 (49%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K Q+LI +L +YQ + ++F+ A + K + + + +A+L G + Q +
Sbjct: 257 KAQALIALLKQYQWPQ---VLVFISARDDADAIAKRLVK----AGINAAALHGEKD-QTV 308
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R+ +T+A F+ R+ +LVAT + G+ + VVI DL + Y+ GR +
Sbjct: 309 RS----QTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARA 364
Query: 825 GSD--YILMIERGNLSHATFLRN 845
G+ I ++ G + + T +RN
Sbjct: 365 GAKGLAISLVCHGEMPNLTAIRN 387
Score = 70 (29.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 44/199 (22%), Positives = 82/199 (41%)
Query: 288 KVGKKSEAKEKMPEEQARP---YQLDVLEQAKKKNTIAFLETGAGKTLIAVL-LIRSICN 343
++G + ++ +P P QL + ++ +A +TG+GKT L L++ +
Sbjct: 21 ELGLNAALRKALPTRLKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQILWQ 80
Query: 344 DLQRQNK-------KMLAVFLVPKVPLVYQQAEVIREQTGYV-------VGHYCGEMGQD 389
+ Q K LA+ LVP L Q +E + + + CG +
Sbjct: 81 QIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGVA-- 138
Query: 390 FWDAQRWQREFDTK-QVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448
++ + K Q++V T LL++ S I ++AI L+LDE ++ + M
Sbjct: 139 ---LEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWP-DM 194
Query: 449 SEFYHTTSKEKRPSVFGMT 467
+ K K+ +F T
Sbjct: 195 QKLMAMMPKRKQTLLFSAT 213
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 123 (48.4 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 43/146 (29%), Positives = 71/146 (48%)
Query: 721 DF-RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN-SQEMRTFQMQETIAKFRD 778
DF + +IFV+ V A L K+ E +F S+ H+ SQE R + + F++
Sbjct: 287 DFNQVVIFVKSVSRAAELNKLLVEC---NF---PSICIHSGMSQEERLTRYKS----FKE 336
Query: 779 GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLS 838
G +LVAT + G+DI + N+VI +D+ + Y+ GRA + G+ + + + S
Sbjct: 337 GHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAS 396
Query: 839 HATFLRNARNSEETLRKEAIERTDLS 864
+ L + E KE E+ D S
Sbjct: 397 DSEVLNQVQERFEVDIKELPEQIDTS 422
Score = 62 (26.9 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 35/156 (22%), Positives = 66/156 (42%)
Query: 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA-EVIREQTGY 377
+ I ++G GKT + VL S ++ ++ A+ L L YQ E +R T Y
Sbjct: 85 DVICQAKSGMGKTAVFVL---STLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFST-Y 140
Query: 378 V----VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433
+ V + G G + + + + ++V T +L + R + ++ + ILD
Sbjct: 141 LPDTKVSVFYG--GVNI-KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILD 197
Query: 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS 469
EC ++ + E + T +K+ +F T S
Sbjct: 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 113 (44.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 37/147 (25%), Positives = 66/147 (44%)
Query: 689 VDVIIGA-AVADGKVTPKVQSLIKILLKYQHTEDFRAII------FVERVVAALVLPKVF 741
V V IG AD + +++ +++++ ++ + I+ ++V+A + K
Sbjct: 277 VTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEA 336
Query: 742 AELPSLSFVKSASLIG-HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800
+ L K + G H + + F+ E F+ G T+LVAT VA GLDI
Sbjct: 337 MRVERLLRTKGFKVAGIHGDLSQQERFRSLEA---FKSGAATVLVATDVAARGLDIPHVK 393
Query: 801 VVIRFDLAKTVLAYIQSRGRARKPGSD 827
+V+ TV Y+ GR + G+D
Sbjct: 394 LVVNVTFPLTVEDYVHRIGRTGRAGAD 420
Score = 74 (31.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 41/161 (25%), Positives = 66/161 (40%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNK--KMLAVFLVPKVPL---VYQQAEVIR 372
++ I ETG+GKTL L DL+ + K + LAV + P L +Y Q
Sbjct: 111 RDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVISPTRELAMQIYDQLVKFA 170
Query: 373 EQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLI 431
E+ V G + +D QRE + V+V T L ++ + + + L+
Sbjct: 171 EKVDIQVACIFGGVKKDE------QREALKSAAVVVATPGRLKDLQNDGSLDLGRVKYLV 224
Query: 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSV-FGMTASPV 471
LDE + K + + + KR +V F T P+
Sbjct: 225 LDEADRMLDKG-FEQDIKDIISPMPVSKRQTVMFTATWPPI 264
>UNIPROTKB|H0YJZ6 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636
PROSITE:PS50142 SMART:SM00535 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 HGNC:HGNC:17098 ChiTaRS:DICER1
Ensembl:ENST00000532939 Uniprot:H0YJZ6
Length = 394
Score = 128 (50.1 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 32/94 (34%), Positives = 46/94 (48%)
Query: 1413 LKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPS-RWAA 1471
LK ++ +LF YP HEG+L+ MR + VSN LY+ KGL S + F P W
Sbjct: 2 LKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLP 61
Query: 1472 PGVLPVFDEDTKDG-DSSLFDQEKSVAEDKLGTD 1504
PG + D+ D + ++ +A KL D
Sbjct: 62 PGYVVNQDKSNTDKWEKDEMTKDCMLANGKLDED 95
Score = 55 (24.4 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1592 FHALEDALKIKFKDRGLLVEAITHAS 1617
F E + +FK++ L++A THAS
Sbjct: 345 FENFEKKINYRFKNKAYLLQAFTHAS 370
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 122 (48.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 43/140 (30%), Positives = 65/140 (46%)
Query: 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ---EMRTFQMQETIAKFRDG 779
R +I E + A++ + +L+ A GH+ + +M TIA + G
Sbjct: 236 RHLITDESLRRAIIFSATKRDAENLALELKAQ--GHSAAALHGDMPQNARNRTIAAMKQG 293
Query: 780 RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSH 839
R+ LLVAT VA GLD+ + VI FDL K Y+ GR + G+ I I +L+
Sbjct: 294 RIRLLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIA-ISFASLNE 352
Query: 840 ATFL-RNARNSEETLRKEAI 858
+L R R +TL + I
Sbjct: 353 VNYLARIERYIGQTLPEHHI 372
Score = 63 (27.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 29/131 (22%), Positives = 55/131 (41%)
Query: 306 PYQLDVLEQAKKK-NTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPL 363
P Q + +A + + +A +TG GKT VL ++ + + Q + + L P L
Sbjct: 26 PVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQRLSSPPQGPGRGPRVLVLTPTREL 85
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
Q + +R ++ +G + AQ +V T L+++L +
Sbjct: 86 AQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLSAPV-DFIVATPGRLVDLLDRRSLD 144
Query: 424 MEAINLLILDE 434
+ + LL+LDE
Sbjct: 145 LSRLELLVLDE 155
>GENEDB_PFALCIPARUM|PFL2475w [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 99 (39.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 44/143 (30%), Positives = 72/143 (50%)
Query: 308 QLDVLEQAKK-KNTIAFLETGAGKTLIAVL-----LIRSICNDLQRQNKK-----MLAVF 356
Q DV+ A + K+ +A ETG+GKTL VL L++S+ ++R N K A+
Sbjct: 114 QRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALI 173
Query: 357 LVPKVPLVYQQAEVIREQTGYVVGHY---CGEMGQDFWDAQRWQREFDTKQ-VLVMTAQI 412
L+P L Q +VIR T YV Y CG + D ++ + EF + + V T
Sbjct: 174 LLPTRELSLQCYDVIRSLTKYVTITYSLFCGGI-----DIKQQEYEFKKRNDIFVCTPGR 228
Query: 413 LLNILRHSIIK-MEAINLLILDE 434
+L++L +S + + +++ DE
Sbjct: 229 ILDLLLNSSSDFINYLEIVVFDE 251
Score = 92 (37.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
++ A L G + SQ+ R E+I KF+ V L+ T +A G+DI VI +++
Sbjct: 411 LRCAELHG-SMSQKKRI----ESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPS 465
Query: 810 TVLAYIQSRGRARKPGSDYI 829
V+ Y+ GR + G + I
Sbjct: 466 NVIKYVHRIGRTARIGKEGI 485
>UNIPROTKB|Q8I4R9 [details] [associations]
symbol:PFL2475w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 KO:K13181 RefSeq:XP_001350899.1
ProteinModelPortal:Q8I4R9 EnsemblProtists:PFL2475w:mRNA
GeneID:811547 KEGG:pfa:PFL2475w EuPathDB:PlasmoDB:PF3D7_1251500
HOGENOM:HOG000283593 OMA:ANSFMEL ProtClustDB:CLSZ2433580
Uniprot:Q8I4R9
Length = 717
Score = 99 (39.9 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 44/143 (30%), Positives = 72/143 (50%)
Query: 308 QLDVLEQAKK-KNTIAFLETGAGKTLIAVL-----LIRSICNDLQRQNKK-----MLAVF 356
Q DV+ A + K+ +A ETG+GKTL VL L++S+ ++R N K A+
Sbjct: 114 QRDVIPLALEGKSILANSETGSGKTLAFVLPILERLLQSVNIKMRRNNMKGSYNITKALI 173
Query: 357 LVPKVPLVYQQAEVIREQTGYVVGHY---CGEMGQDFWDAQRWQREFDTKQ-VLVMTAQI 412
L+P L Q +VIR T YV Y CG + D ++ + EF + + V T
Sbjct: 174 LLPTRELSLQCYDVIRSLTKYVTITYSLFCGGI-----DIKQQEYEFKKRNDIFVCTPGR 228
Query: 413 LLNILRHSIIK-MEAINLLILDE 434
+L++L +S + + +++ DE
Sbjct: 229 ILDLLLNSSSDFINYLEIVVFDE 251
Score = 92 (37.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
++ A L G + SQ+ R E+I KF+ V L+ T +A G+DI VI +++
Sbjct: 411 LRCAELHG-SMSQKKRI----ESIMKFKKAEVDFLLTTELASRGIDIDHVLYVINYNVPS 465
Query: 810 TVLAYIQSRGRARKPGSDYI 829
V+ Y+ GR + G + I
Sbjct: 466 NVIKYVHRIGRTARIGKEGI 485
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 132 (51.5 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 80/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 1040 MANCFEALIGAVYLEGSLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 1096
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L E+A+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 1097 LIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 1156
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 1157 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 1212
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 1213 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 1252
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 1253 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 1311
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 1312 GKGPSIQQAEMGAA 1325
Score = 75 (31.5 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 966 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022
Score = 39 (18.8 bits), Expect = 6.1e-05, Sum P(3) = 6.1e-05
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1133 EKITKTDAWTNPLQ 1146
E I TD+W PL+
Sbjct: 336 EIIKNTDSWAPPLE 349
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 123 (48.4 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 43/146 (29%), Positives = 71/146 (48%)
Query: 721 DF-RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN-SQEMRTFQMQETIAKFRD 778
DF + +IFV+ V A L K+ E +F S+ H+ SQE R + + F++
Sbjct: 346 DFNQVVIFVKSVSRAAELNKLLVEC---NF---PSICIHSGMSQEERLTRYKS----FKE 395
Query: 779 GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLS 838
G +LVAT + G+DI + N+VI +D+ + Y+ GRA + G+ + + + S
Sbjct: 396 GHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASAS 455
Query: 839 HATFLRNARNSEETLRKEAIERTDLS 864
+ L + E KE E+ D S
Sbjct: 456 DSEVLNQVQERFEVDIKELPEQIDTS 481
Score = 62 (26.9 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 35/156 (22%), Positives = 66/156 (42%)
Query: 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA-EVIREQTGY 377
+ I ++G GKT + VL S ++ ++ A+ L L YQ E +R T Y
Sbjct: 85 DVICQAKSGMGKTAVFVL---STLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFST-Y 140
Query: 378 V----VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433
+ V + G G + + + + ++V T +L + R + ++ + ILD
Sbjct: 141 LPDTKVSVFYG--GVNI-KIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILD 197
Query: 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS 469
EC ++ + E + T +K+ +F T S
Sbjct: 198 ECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 233
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 110 (43.8 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 36/102 (35%), Positives = 48/102 (47%)
Query: 1589 SVDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFS 1648
S + A E L F+ LLV A+TH S SS QRLEF+GD VL ++ L +
Sbjct: 4 SAEMKAFEARLGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEA 63
Query: 1649 YTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSAL 1690
+ G+L A V E A VA + L L+ G S +
Sbjct: 64 DKDATEGQLAPRFNALVRKETCAEVAREADLGAVLKLGRSEM 105
Score = 51 (23.0 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 1702 LEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740
L +LK G + G + +LGD +E++ A++ D G
Sbjct: 94 LGAVLKLGRSEMMSGGRRKLALLGDAMEAVIAAVYRDGG 132
Score = 51 (23.0 bits), Expect = 6.4e-05, Sum P(3) = 6.4e-05
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 1855 RQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKA 1914
+ L + R P Y V+ GP HA FT + D + G + ++A
Sbjct: 159 KTALQEWAQARGQTPPRYELVKRSGPDHAPVFT--ILAELADGRRAEATAG----AKRQA 212
Query: 1915 KDSAAVLLLELLN 1927
+ +AA LL+ L+
Sbjct: 213 EQAAARKLLDSLD 225
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 94 (38.1 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
+K A+ + +M E + +FR G +L++T V GLD+ Q ++VI +DL
Sbjct: 285 MKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPN 344
Query: 810 TVLAYIQSRGRARKPG 825
YI GR+ + G
Sbjct: 345 NRELYIHRIGRSGRFG 360
Score = 88 (36.0 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 39/132 (29%), Positives = 61/132 (46%)
Query: 316 KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375
K ++ IA ++G GKT A I S+ L Q ++ A+ L P L Q +V+
Sbjct: 62 KARDVIAQAQSGTGKT--ATFSI-SVLQSLDTQVRETQALILSPTRELAVQIQKVVLALG 118
Query: 376 GY--VVGHYC--G-EMGQDFWDAQRWQREFDTKQVLVM-TAQILLNILRHSIIKMEAINL 429
Y V H C G +G+D R+ D Q +V T + +++R ++ AI L
Sbjct: 119 DYMNVQCHACIGGTNLGEDI-------RKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKL 171
Query: 430 LILDECHHAVKK 441
L+LDE + K
Sbjct: 172 LVLDEADEMLNK 183
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 94 (38.1 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
+K A+ + +M E + +FR G +L++T V GLD+ Q ++VI +DL
Sbjct: 285 MKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYDLPN 344
Query: 810 TVLAYIQSRGRARKPG 825
YI GR+ + G
Sbjct: 345 NRELYIHRIGRSGRFG 360
Score = 88 (36.0 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 39/132 (29%), Positives = 61/132 (46%)
Query: 316 KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375
K ++ IA ++G GKT A I S+ L Q ++ A+ L P L Q +V+
Sbjct: 62 KARDVIAQAQSGTGKT--ATFSI-SVLQSLDTQVRETQALILSPTRELAVQIQKVVLALG 118
Query: 376 GY--VVGHYC--G-EMGQDFWDAQRWQREFDTKQVLVM-TAQILLNILRHSIIKMEAINL 429
Y V H C G +G+D R+ D Q +V T + +++R ++ AI L
Sbjct: 119 DYMNVQCHACIGGTNLGEDI-------RKLDYGQHVVSGTPGRVFDMIRRRNLRTRAIKL 171
Query: 430 LILDECHHAVKK 441
L+LDE + K
Sbjct: 172 LVLDEADEMLNK 183
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 93 (37.8 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 770 QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+ + +F G+V +LVAT VA GLDI V+ FDL Y+ GR + G
Sbjct: 284 RRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAG 339
Score = 90 (36.7 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 48/218 (22%), Positives = 90/218 (41%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLI--RSICNDLQRQNKKMLAVFLV 358
++ P Q + ++ ++ +A +TG GKT L I + + N + + L
Sbjct: 22 QKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVLILT 81
Query: 359 PKVPLVYQQAEVIREQTGY----VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILL 414
P L Q AE + + Y V+ Y G + AQ+ +R D ++V T LL
Sbjct: 82 PTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVET--QAQKLKRGAD---IIVATPGRLL 136
Query: 415 NILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV--- 471
L + + +++ L+LDE + +S + + +K+++ +F T S
Sbjct: 137 EHLTACNLSLSSVDFLVLDEADRMLDMG-FSADIQKILQAVNKKRQNLLFSATFSSAVKK 195
Query: 472 --NLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE 507
N + QV A K + VV ++ R++ E
Sbjct: 196 LANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRE 233
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 113 (44.8 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
+A+ I N SQ RT + +A F+DG V +LVAT +A G+DI V+ FDL
Sbjct: 276 TAAAIHGNKSQGART----KALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPNVP 331
Query: 812 LAYIQSRGRARKPGS 826
Y+ GR + G+
Sbjct: 332 EDYVHRIGRTARAGN 346
Score = 70 (29.7 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 40/175 (22%), Positives = 71/175 (40%)
Query: 302 EQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVL-LIRSICNDLQRQ--NKKMLAVFL 357
E P Q + ++ +A +TG GKT L L++ + + + + + A+ L
Sbjct: 27 ETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNVRALIL 86
Query: 358 VPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ--RWQREFDTKQVLVMTAQILLN 415
P L Q +E I Y+ H G + Q R ++ D VLV T LL+
Sbjct: 87 TPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGVD---VLVATPGRLLD 143
Query: 416 ILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
+ +K + + ILDE + + + + K+++ +F T SP
Sbjct: 144 LYNQRAVKFSQLEVFILDEADRMLDMG-FIRDIKKLMTALPKDRQNLLFSATFSP 197
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 93 (37.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA 813
S++ + E R +T+ +F + ++LVAT VA GLDI ++VI + +A+
Sbjct: 275 SVLALHGDLEQR--DRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEV 332
Query: 814 YIQSRGRARKPGS 826
++ GR + GS
Sbjct: 333 HVHRIGRTGRAGS 345
Score = 89 (36.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 43/199 (21%), Positives = 89/199 (44%)
Query: 302 EQARPYQLDVL-EQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360
EQ P Q L E K K+ I +TG+GKT L ++ N L+ + ++ ++ + P
Sbjct: 31 EQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGL---ALLNKLEVKKFRIQSMVICPT 87
Query: 361 VPLVYQQAEVIREQTGYV----VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI 416
L Q A+ +R+ + + CG G F Q E ++ ++ ++
Sbjct: 88 RELADQVAKELRKLARGIHNIKILTLCG--GTPF-GPQIGSLEHGAHVIVGTPGRLEEHV 144
Query: 417 LRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGV 476
++ ++ +++ +NLL+LDE ++ + + T +++ +F T P +K +
Sbjct: 145 IKGTL-QLDNLNLLVLDEADRMLEMG-FQAALDNIVGRTPLDRQTLLFSATF-PDQIKSI 201
Query: 477 SSQV---DCAIKICNLESK 492
S + +KI + E +
Sbjct: 202 SESIMTDPVMVKIASSEDQ 220
Score = 46 (21.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 1731 IAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQ-----QAEGLEYK 1785
IA ++F D +++ V + + L+ ++TPE LP V ER Q Q +G + +
Sbjct: 348 IAYSLFSD--KESYKVG-LLEDYLEAVITPEPLPSLAVLS-NERPQAKMATIQIDGGKKQ 403
Query: 1786 ASRSGNLA---TVEVYIDGVQVG 1805
R+G++ T + + G QVG
Sbjct: 404 KVRAGDILGALTGDNGVQGSQVG 426
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 93 (37.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLA 813
S++ + E R +T+ +F + ++LVAT VA GLDI ++VI + +A+
Sbjct: 275 SVLALHGDLEQR--DRDQTLLRFANKSASILVATDVAARGLDIDSLDLVINYHIARDSEV 332
Query: 814 YIQSRGRARKPGS 826
++ GR + GS
Sbjct: 333 HVHRIGRTGRAGS 345
Score = 89 (36.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 43/199 (21%), Positives = 89/199 (44%)
Query: 302 EQARPYQLDVL-EQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360
EQ P Q L E K K+ I +TG+GKT L ++ N L+ + ++ ++ + P
Sbjct: 31 EQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGL---ALLNKLEVKKFRIQSMVICPT 87
Query: 361 VPLVYQQAEVIREQTGYV----VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI 416
L Q A+ +R+ + + CG G F Q E ++ ++ ++
Sbjct: 88 RELADQVAKELRKLARGIHNIKILTLCG--GTPF-GPQIGSLEHGAHVIVGTPGRLEEHV 144
Query: 417 LRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGV 476
++ ++ +++ +NLL+LDE ++ + + T +++ +F T P +K +
Sbjct: 145 IKGTL-QLDNLNLLVLDEADRMLEMG-FQAALDNIVGRTPLDRQTLLFSATF-PDQIKSI 201
Query: 477 SSQV---DCAIKICNLESK 492
S + +KI + E +
Sbjct: 202 SESIMTDPVMVKIASSEDQ 220
Score = 46 (21.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 1731 IAGAIFLDSGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQ-----QAEGLEYK 1785
IA ++F D +++ V + + L+ ++TPE LP V ER Q Q +G + +
Sbjct: 348 IAYSLFSD--KESYKVG-LLEDYLEAVITPEPLPSLAVLS-NERPQAKMATIQIDGGKKQ 403
Query: 1786 ASRSGNLA---TVEVYIDGVQVG 1805
R+G++ T + + G QVG
Sbjct: 404 KVRAGDILGALTGDNGVQGSQVG 426
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 130 (50.8 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 80/314 (25%), Positives = 133/314 (42%)
Query: 1535 LADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPE--EV--GCPSRPACVPES----- 1585
+A+ EALIG Y+EG + A L G + +DP+ EV P P + E
Sbjct: 1039 MANCFEALIGAVYLEGTLEEAKQLF---GRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQ 1095
Query: 1586 -VLRSVDFHAL---EDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDH 1639
+ S L E+A+ + F LL A T + + ++ QR+EF+GD+++
Sbjct: 1096 LIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQL 1155
Query: 1640 LITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVK 1699
+ T++LF + + G LT LR++ VNN A+VA + + ++ + D+ R
Sbjct: 1156 VATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE----LGMQEYAITNDKTKRPVAL 1211
Query: 1700 EVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRD-TSVVWQV-FQPLLDPM 1757
K L D++ES A+++D + V F P L
Sbjct: 1212 RT--------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEF 1251
Query: 1758 VTPETLPMHPVRELQERCQQ-QAEGLE-----YKASRS-----GNLATVEVYIDGVQVGV 1806
+ + P +LQ+ C + EG E YK ++ TV VY G ++G
Sbjct: 1252 ILNQDWN-DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC 1310
Query: 1807 AQNPQKKMAQKLAA 1820
+ P + A+ AA
Sbjct: 1311 GKGPSIQQAEMGAA 1324
Score = 75 (31.5 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459
ER E LGDA ++++ S L+ +P EG L R +V N L A L ++
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 282 NQECNGKVGKKSEAKEKMPEE 302
+ + +GK + KEK PEE
Sbjct: 373 DSQSSGKEKSYTSIKEKEPEE 393
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 121 (47.7 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 38/129 (29%), Positives = 66/129 (51%)
Query: 697 VADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756
+ +GK K Q L +IL Y+ I+FV + A ++ K ++ K+ +L
Sbjct: 950 LTEGK---KKQKLQEILEMYEPP----IIVFVNQKKVADIISKSITKMK----YKAVALH 998
Query: 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816
G +QE+R ++T++ F++ +LVAT VA G+D+ +VI FD+ K + +Y
Sbjct: 999 G-GKAQEIR----EQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTH 1053
Query: 817 SRGRARKPG 825
GR + G
Sbjct: 1054 RIGRTGRAG 1062
Score = 71 (30.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 34/147 (23%), Positives = 60/147 (40%)
Query: 294 EAKEKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDL-----QR 347
+A +K E+ P Q+ + A + ++ I ETG+GKT VL + S L +
Sbjct: 711 KAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYET 770
Query: 348 QNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLV 407
A+ + P L Q E + Y +G +AQ ++ ++++
Sbjct: 771 SQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGV-EIVI 829
Query: 408 MTAQILLNILRHSIIKMEAINLLILDE 434
T L + L + + N +ILDE
Sbjct: 830 GTPGRLQDCLEKAYTVLNQCNYVILDE 856
Score = 51 (23.0 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 95 ENHQAEGLILLSNNGSDKDGV---DRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVH 151
EN + + +I + +G +RK+K E+ ++ ++ + R D + N H
Sbjct: 292 ENDKQKKMISSKEKEEEGEGEGEGERKKKKEH-HHIRHSCIDNRKHRRTEDSYEYRNDEH 350
Query: 152 RDNGNN-DHEASRIRDFDSE 170
R N +E I D D E
Sbjct: 351 RTNDKKRKNEYDHIND-DKE 369
Score = 48 (22.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 22/103 (21%), Positives = 38/103 (36%)
Query: 97 HQAEGLILLSNNGSDKDGVDRKRKLENCENV-NGYLVNGKAGGRLSDHFTKENGVHRDNG 155
++ + L + N SD D D +N N N N ++++ N V+ D+
Sbjct: 43 NEEDNLYIKRNEQSD-DNDDNDNNDDNDNNDDNDDDNNDDNNNDVNNNNVNNNDVNNDDV 101
Query: 156 NNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSD 198
NND E +D + + + S+Y Q D
Sbjct: 102 NNDGEKRNNISYDKNKKNLFNEKNDNIVHSSKYKKDNQTQEDD 144
Score = 38 (18.4 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 44 DSVDNTSNQDSLSND 58
D+ DN +N D+ +ND
Sbjct: 58 DNDDNDNNDDNDNND 72
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 121 (47.7 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 38/129 (29%), Positives = 66/129 (51%)
Query: 697 VADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756
+ +GK K Q L +IL Y+ I+FV + A ++ K ++ K+ +L
Sbjct: 950 LTEGK---KKQKLQEILEMYEPP----IIVFVNQKKVADIISKSITKMK----YKAVALH 998
Query: 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816
G +QE+R ++T++ F++ +LVAT VA G+D+ +VI FD+ K + +Y
Sbjct: 999 G-GKAQEIR----EQTLSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESYTH 1053
Query: 817 SRGRARKPG 825
GR + G
Sbjct: 1054 RIGRTGRAG 1062
Score = 71 (30.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 34/147 (23%), Positives = 60/147 (40%)
Query: 294 EAKEKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTLIAVLLIRSICNDL-----QR 347
+A +K E+ P Q+ + A + ++ I ETG+GKT VL + S L +
Sbjct: 711 KAIKKAKYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYET 770
Query: 348 QNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLV 407
A+ + P L Q E + Y +G +AQ ++ ++++
Sbjct: 771 SQDGPYALVIAPSRELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGV-EIVI 829
Query: 408 MTAQILLNILRHSIIKMEAINLLILDE 434
T L + L + + N +ILDE
Sbjct: 830 GTPGRLQDCLEKAYTVLNQCNYVILDE 856
Score = 51 (23.0 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 95 ENHQAEGLILLSNNGSDKDGV---DRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVH 151
EN + + +I + +G +RK+K E+ ++ ++ + R D + N H
Sbjct: 292 ENDKQKKMISSKEKEEEGEGEGEGERKKKKEH-HHIRHSCIDNRKHRRTEDSYEYRNDEH 350
Query: 152 RDNGNN-DHEASRIRDFDSE 170
R N +E I D D E
Sbjct: 351 RTNDKKRKNEYDHIND-DKE 369
Score = 48 (22.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 22/103 (21%), Positives = 38/103 (36%)
Query: 97 HQAEGLILLSNNGSDKDGVDRKRKLENCENV-NGYLVNGKAGGRLSDHFTKENGVHRDNG 155
++ + L + N SD D D +N N N N ++++ N V+ D+
Sbjct: 43 NEEDNLYIKRNEQSD-DNDDNDNNDDNDNNDDNDDDNNDDNNNDVNNNNVNNNDVNNDDV 101
Query: 156 NNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSD 198
NND E +D + + + S+Y Q D
Sbjct: 102 NNDGEKRNNISYDKNKKNLFNEKNDNIVHSSKYKKDNQTQEDD 144
Score = 38 (18.4 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 44 DSVDNTSNQDSLSND 58
D+ DN +N D+ +ND
Sbjct: 58 DNDDNDNNDDNDNND 72
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 117 (46.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 724 AIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783
A++FV+ A+ L K+ + + S V S I S + R ET+ +FR G + +
Sbjct: 376 ALVFVQSKDRAVQLVKLLSAIDSNLKVDS---INSGKSDKER----DETMERFRRGEIWV 428
Query: 784 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
LV T + GLD+ +VI +DL ++++YI GR + G
Sbjct: 429 LVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAG 470
Score = 67 (28.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 28/94 (29%), Positives = 43/94 (45%)
Query: 303 QARPYQLDVLE-QAKKKNTIAFLETGAGKTL-IAVLLIRSICNDLQR------QNKKMLA 354
Q P Q+ + +++N +A TG+GKTL A+ +I I QR + K+LA
Sbjct: 148 QPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLA 207
Query: 355 VFLVPKVPLVYQQ-AEVIR--EQTGYVVGHYCGE 385
V L P L Q E ++ T ++ GE
Sbjct: 208 VVLEPTRELAAQTYTEFLKYCANTSISAANFSGE 241
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 124 (48.7 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 747 LSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFD 806
LS +K+A L G N SQE R +Q+ FRDG+V L+A+ VA GLDI VI ++
Sbjct: 458 LSDLKAAELHG-NLSQEQRFDSLQQ----FRDGQVNYLLASDVASRGLDIIGVKTVINYN 512
Query: 807 LAKTVLAYIQSRGRARKPGSD 827
+ + YI GR + G D
Sbjct: 513 MPNNMANYIHRVGRTARAGMD 533
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 35/144 (24%), Positives = 63/144 (43%)
Query: 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVL--LIRSICNDLQRQNK 350
+A +K+ Q P Q + A K+ +A TG+GKT +L L R + D + +
Sbjct: 203 KAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAI 262
Query: 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTA 410
++L L+P L Q V+ + C +G AQ + V+
Sbjct: 263 RVL--ILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKSPDVVIATPG 320
Query: 411 QILLNILRHSIIKMEAINLLILDE 434
+++ ++L I ++ + +LILDE
Sbjct: 321 RLIDHLLNAHGIGLDDLEILILDE 344
Score = 45 (20.9 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 151 HRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDRV 202
+ DN ++D E + + + E+ ++ + + K + Q + ++DK +V
Sbjct: 124 NNDNDDDDEEVNEEEEEEEEEEDNENEK-EINKKQQQQQQQSNKQTTDKIKV 174
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 1162 GGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLVPDREAMQIHNADMPTG 1221
G D E GK+ QKS R + + + A G + D+E ++ N
Sbjct: 708 GDDNEEIDSGKMFERSQRAQKSSGKETKRIESLRRNYM-AGGALTDQEKQRVDNKKSKKN 766
Query: 1222 KLMMAD 1227
K M+ +
Sbjct: 767 KRMIVN 772
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 131 (51.2 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 52/195 (26%), Positives = 89/195 (45%)
Query: 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFV------ERVVAALVLPKV 740
+H+ V IG+ + V+ ++++ ++ E R + F+ E+V+ K
Sbjct: 586 DHIQVHIGST--EITANHNVRQIVEVCQDFEKKE--RMLSFLGSVGRDEKVIVFAETRKG 641
Query: 741 FAELPS-LSF--VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIR 797
+L L F KS + G N SQ R F +++F++G V +++AT VA GLDI+
Sbjct: 642 VDDLQRVLQFSGFKSIGIHG-NKSQPERDF----VLSQFKNGMVPIMIATDVASRGLDIK 696
Query: 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL--MIERGNLSHATFLRNARNSEETLRK 855
V+ +D T+ YI GR + G+ + ++ N A L E +K
Sbjct: 697 DIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLT--EAKQK 754
Query: 856 EAIERTDLSHLKDTS 870
IE ++LS TS
Sbjct: 755 IPIELSNLSVTPSTS 769
Score = 61 (26.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 28/124 (22%), Positives = 54/124 (43%)
Query: 316 KKKNTIAFLETGAGKTLIAVL--LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373
K ++ I +TG+GKTL +L ++ + R++ + + L P L Q I+E
Sbjct: 420 KGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPTRELALQ----IQE 475
Query: 374 QTGYVVGHYCGEMGQDFWDAQRWQREFDTK---QVLVMTAQILLNILRHSIIKMEAINLL 430
+T G + A + + K ++++ T L++IL + + L
Sbjct: 476 ETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYL 535
Query: 431 ILDE 434
+LDE
Sbjct: 536 VLDE 539
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 122 ENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDS 169
+N + Y + G + + +RD G+ + ++SR D++S
Sbjct: 15 DNRSGNSSYSSTSRGGSSYGNRSGSDRDYNRDGGSYNRDSSR--DYNS 60
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 112 (44.5 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 61/229 (26%), Positives = 105/229 (45%)
Query: 619 ERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEG-GTNEIEEGEL 677
+ A+ LD+ F+ + KV+ E + KKD D+E ++G T E +
Sbjct: 459 DEADRMLDMGFEPD-VQKVL-----EYMPDTNMKKDTDEFDNEEALMKGFSTREKYRQTV 512
Query: 678 LDSHVVSGG-EHVD---------VIIGAAVADGKVTPKVQSLI---------KILLKYQH 718
+ + +S E + V IG+A GK T +V+ ++ K L++
Sbjct: 513 MFTATMSSAIERLARQYLRRPAVVHIGSA---GKPTERVEQVVYMVPEDRKRKKLVEVLE 569
Query: 719 TEDFRA--IIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKF 776
++ F+ IIFV + A +L K L L F K L G Q+ R + +Q
Sbjct: 570 SQ-FQPPIIIFVNQKKGADMLSK---GLTKLGF-KPTVLHG-GKGQDQREYALQA----L 619
Query: 777 RDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
++G +LVAT VA G+D++ ++V+ +D+AK++ Y GR + G
Sbjct: 620 KEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAG 668
Score = 72 (30.4 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 30/126 (23%), Positives = 60/126 (47%)
Query: 316 KKKNTIAFLETGAGKT---LIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372
+ ++ I ETG+GKT L+ +L+ + ++RQ + L + + P + A+ I
Sbjct: 337 QNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAP-TRELAQQIE 395
Query: 373 EQT---GYVVG-HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAIN 428
E+T G ++G +G + Q + +V++ T LL++L + + +
Sbjct: 396 EETNKFGKLLGIKTVSVIGGASREDQGMKLRMGV-EVVIATPGRLLDVLENRYLLLNQCT 454
Query: 429 LLILDE 434
+ILDE
Sbjct: 455 YVILDE 460
Score = 51 (23.0 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 137 GGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSKRA 177
GGR D + RD N+D + R D D+E+ SK A
Sbjct: 119 GGRRRDRSRSRD--RRDR-NDDRKRDRNEDSDNEEDVSKMA 156
Score = 45 (20.9 bits), Expect = 0.00054, Sum P(4) = 0.00054
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 146 KENGVHRDNGNN-DHEASRIRDF--DSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDR 201
++ G+ R N + D E R RD D +R R R ++ + R + S +DR
Sbjct: 73 RDRGLDRGNDRDRDRERERDRDRRRDRRERSGSRDRRRRSRSRDRDGGRRRDRSRSRDR 131
Score = 44 (20.5 bits), Expect = 0.00067, Sum P(4) = 0.00067
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 146 KENGVHRDNG---NNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQYCSSDKDR 201
K + RD G ND + R R+ D + R +R R + SR + +DR
Sbjct: 67 KTSDDRRDRGLDRGNDRDRDRERERDRDRRRDRRERSGSRDRRRRSRSRDRDGGRRRDR 125
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 274 AGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIA 322
AG + N +E N + E + + E++ ++L+ ++ KK+ +A
Sbjct: 215 AGTDVNAQKKEKNSFYQEMMENRRTVDEKEQEMHRLE--KELKKEKKVA 261
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 103 (41.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 772 TIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
++ KF+ + +LVAT VA GLDI +VVI +D+ AYI GR + G
Sbjct: 404 SLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAG 457
Score = 80 (33.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 38/146 (26%), Positives = 63/146 (43%)
Query: 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
E+ E M + P Q + + A + K+ I +TG+GKT A I I L +
Sbjct: 136 ESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKT--AAFAI-PILQSLWHAQQPY 192
Query: 353 LAVFLVPKVPLVYQQAEVIREQTGYVVG--HYCGEMGQDFWDAQRWQREFDTK-QVLVMT 409
A+ L P L +Q + + G +G C G D D R + K V+V T
Sbjct: 193 FALVLAPTRELTFQIKDTF-DALGSSMGLRSSCIVGGMDMMDQAR---DLMRKPHVIVAT 248
Query: 410 AQILLNILRHSI-IKMEAINLLILDE 434
+++ L H+ ++ + L++DE
Sbjct: 249 PGRIMDHLEHTKGFSLKNLKYLVMDE 274
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 91 (37.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 91 (37.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 43/201 (21%), Positives = 99/201 (49%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K+E + +++LDE + + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVEHVQMIVLDEANKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 122 (48.0 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 40/119 (33%), Positives = 58/119 (48%)
Query: 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766
Q LI +L KY ++ R ++F V A L + L + K+ S+ G N +Q RT
Sbjct: 352 QRLIALLEKYHKSQKNRVLVFALYKVEAERLERF---LQQRGW-KAVSIHG-NKAQSERT 406
Query: 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+++ F++G LLVAT VA GLDI VVI + T Y+ GR + G
Sbjct: 407 ----RSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAG 461
Score = 59 (25.8 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 32/163 (19%), Positives = 71/163 (43%)
Query: 318 KNTIAFLETGAGKTLI----AVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVI 371
++ I +TG+GKTL A++ + + +KK+ LV P L Q ++V+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVL 211
Query: 372 REQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQ----VLVMTAQILLNILRHSIIKMEAI 427
RE G CG + + + +++ T L +++ +++++ +
Sbjct: 212 RE-----AGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDV 266
Query: 428 NLLILDECHHAVK---KHPYSLVMSEFYHTTSKEKRPSVFGMT 467
+ ++LDE + + P ++S T+K ++ +F T
Sbjct: 267 SFVVLDEADRMLDMGFEEPVRFILSN----TNKVRQMVMFSAT 305
Score = 46 (21.3 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 279 NGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLI 333
NG+ +E + K KK +E+ E+ + + DV E+ + + E+ K ++
Sbjct: 50 NGVEEELSNKEKKKKRKREEKESEKNK--KKDVPEKKLEAEDLGEGESEQQKVVV 102
Score = 42 (19.8 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 148 NGVHRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNESQYSSRGQ 193
NGV + N + + R R+ + E +K+ V K E++ G+
Sbjct: 50 NGVEEELSNKEKKKKRKRE-EKESEKNKKKDVPEKKLEAEDLGEGE 94
>UNIPROTKB|F1S758 [details] [associations]
symbol:LOC100523329 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:CU928873 Ensembl:ENSSSCT00000016589 Uniprot:F1S758
Length = 379
Score = 99 (39.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 265 SGELTVDQRAAIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 311
Score = 79 (32.9 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 33/131 (25%), Positives = 58/131 (44%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+
Sbjct: 33 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVVER---- 85
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 86 -MGRFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 144
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 145 ADVMIDTQGFS 155
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 129 (50.5 bits), Expect = 0.00020, P = 0.00020
Identities = 42/142 (29%), Positives = 67/142 (47%)
Query: 713 LLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQET 772
LL + E+ AIIFV R + A +L + +L V+ ASL QE RT +
Sbjct: 246 LLTCEEYENKTAIIFVNRTMTAEILRRTLKQLE----VRVASLHSQMPQQE-RT----NS 296
Query: 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG--SDYIL 830
+ +FR +L+AT VA GLDI +V+ +D+ +I GR + G D I
Sbjct: 297 LHRFRANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAIS 356
Query: 831 MIERGNLSHATFLRNARNSEET 852
+ + ++S + + N + T
Sbjct: 357 FVTQRDVSRIQAIEDRINKKMT 378
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 115 (45.5 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
Q + T+A FRDG ++LVAT VA GLD+ ++VI ++L ++ GR + G
Sbjct: 398 QRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAG 455
Score = 68 (29.0 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 33/137 (24%), Positives = 56/137 (40%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTL-IAVLLIRSIC--NDLQRQNKKMLAVFL 357
E+ P Q VLE A + ++ I TG GKTL + +I I N + K + L
Sbjct: 137 EKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVL 196
Query: 358 VPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
P L Q + RE + C G R + + V V T +++++
Sbjct: 197 APTRELARQVEKEFRESAPSL-DTICLYGGTPIGQQMR-ELNYGI-DVAVGTPGRIIDLM 253
Query: 418 RHSIIKMEAINLLILDE 434
+ + + + ++LDE
Sbjct: 254 KRGALNLSEVQFVVLDE 270
Score = 45 (20.9 bits), Expect = 0.00025, Sum P(3) = 0.00025
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 1155 GTNERTLGGDRREYGFGKLRHGMAFG 1180
G++ R GG R GFG G + G
Sbjct: 557 GSSSRYSGGSDRSSGFGSFGSGGSSG 582
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 91 (37.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 89 (36.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 43/201 (21%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K+E + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVEHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 112 (44.5 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSC--YQRLEFVGDAVLDHLITKHLFFS 1648
DFH LE + I+F + LL +A T + P + ++ QRLE++GD+VL +I+ +L+ +
Sbjct: 810 DFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLYRN 869
Query: 1649 YTNLPPGRLTDLRAAAVNNE 1668
+ G ++ LR + V+N+
Sbjct: 870 FPLHHEGHMSLLRTSLVSNQ 889
Score = 75 (31.5 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 22/71 (30%), Positives = 32/71 (45%)
Query: 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQ-- 1460
ER E LGDA ++ + S LF EG L R +V N L + A++ + +Q
Sbjct: 669 ERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRIDEMLQFA 728
Query: 1461 --ADRFAPSRW 1469
AD + W
Sbjct: 729 HGADLINEAEW 739
Score = 63 (27.2 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 1726 DIVESIAGAIFLDSGRD--TSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEGLE 1783
D+VE+ GA+++D G + S + VF P L + E LQ+ C L
Sbjct: 921 DLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWN-DAKSHLQQWC------LA 973
Query: 1784 YKASRSGNLATVEVYIDGVQVGVAQN 1809
+ SR+ N A E + G+Q G N
Sbjct: 974 IRDSRNPNPAMPEYRLLGIQ-GPTNN 998
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 273 RAGKEANGINQECNGKVGKKSEAKEKM 299
R G A + ++ N +V K +AK ++
Sbjct: 113 RVGTTAERVLEDFNSRVIKPLKAKRRL 139
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(5) = 0.00027
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1074 LDAELASLKNFHVRLMSIVLDVDVEPY 1100
L AEL LK+ H + L + V+ Y
Sbjct: 531 LKAELIVLKDKHREARQLKLKLPVKDY 557
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 101 (40.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
++SA++ G N SQ RT +A F+ G + +LVAT +A GLDI + V+ ++L
Sbjct: 270 IRSAAIHG-NKSQGART----RALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN 324
Query: 810 TVLAYIQSRGR 820
Y+ GR
Sbjct: 325 VPEDYVHRIGR 335
Score = 77 (32.2 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 38/143 (26%), Positives = 65/143 (45%)
Query: 296 KEKMP-EEQARPYQLDVLEQAKKKNTIAFLETGAGKT--LIAVLLIRSICNDLQRQNKKM 352
+E P ++QA P VLE ++ +A +TG GKT LL I + ++
Sbjct: 22 REPTPIQQQAIPA---VLEG---RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRP 75
Query: 353 L-AVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQ 411
+ A+ L P L Q E +R+ + Y+ G + Q + VLV T
Sbjct: 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV-DVLVATPG 134
Query: 412 ILLNILRHSIIKMEAINLLILDE 434
LL++ + +K++ + +L+LDE
Sbjct: 135 RLLDLEHQNAVKLDQVEILVLDE 157
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 114 (45.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 710 IKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM 769
+K LL+ ++ R I+FVE A + K L + A I + QE R + +
Sbjct: 349 LKSLLQRIFKDNDRIIVFVETKKNADFITKAL-RLDGMP----ALCIHGDKKQEERRWVL 403
Query: 770 QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
E F+ G+ +++AT VA GLDI+ VI FD + Y+ GR + GS
Sbjct: 404 NE----FKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Score = 65 (27.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/120 (22%), Positives = 51/120 (42%)
Query: 318 KNTIAFLETGAGKTLIAVL--LIRSICNDLQRQNKKMLAVFLVPKVPLVYQ-QAEVIREQ 374
K+ I ETG+GKTL +L + + + + + L P L Q + E I+
Sbjct: 151 KDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFS 210
Query: 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
T + + C G Q + + +L+ L+++L ++ + + L+LDE
Sbjct: 211 TESKIRNTCAYGGVPK-SGQIYALKQGV-HILIACPGRLIDLLEQNVTNLMRVTYLVLDE 268
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 114 (45.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 710 IKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM 769
+K LL+ ++ R I+FVE A + K L + A I + QE R + +
Sbjct: 349 LKSLLQRIFKDNDRIIVFVETKKNADFITKAL-RLDGMP----ALCIHGDKKQEERRWVL 403
Query: 770 QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
E F+ G+ +++AT VA GLDI+ VI FD + Y+ GR + GS
Sbjct: 404 NE----FKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGS 456
Score = 65 (27.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/120 (22%), Positives = 51/120 (42%)
Query: 318 KNTIAFLETGAGKTLIAVL--LIRSICNDLQRQNKKMLAVFLVPKVPLVYQ-QAEVIREQ 374
K+ I ETG+GKTL +L + + + + + L P L Q + E I+
Sbjct: 151 KDMIGKAETGSGKTLAFILPAFVHILAQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFS 210
Query: 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
T + + C G Q + + +L+ L+++L ++ + + L+LDE
Sbjct: 211 TESKIRNTCAYGGVPK-SGQIYALKQGV-HILIACPGRLIDLLEQNVTNLMRVTYLVLDE 268
>UNIPROTKB|J3QL17 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP000842 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:18698
ChiTaRS:DDX25 Ensembl:ENST00000530414 Uniprot:J3QL17
Length = 468
Score = 100 (40.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 372 SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 418
Score = 78 (32.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 35/131 (26%), Positives = 60/131 (45%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+ EQ
Sbjct: 140 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVV-EQ--- 192
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 193 -MGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDE 251
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 252 ADVMIDTQGFS 262
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 112 (44.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
+A+ I N SQ RT +A F+ G V +LVAT +A G+DI Q V+ F+L K
Sbjct: 269 TAAAIHGNKSQGART----RALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIA 324
Query: 812 LAYIQSRGRARKPG 825
Y+ GR + G
Sbjct: 325 EDYVHRIGRTGRAG 338
Score = 65 (27.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 29/131 (22%), Positives = 56/131 (42%)
Query: 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPL 363
P QL + K+ +A +TG GKT L ++ + + + ++ A+ L P L
Sbjct: 26 PIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALILTPTREL 85
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
Q + + ++ G + Q QR +LV T L+++ + +K
Sbjct: 86 AAQIQDNVMLYGRHLPLKSAVVFGGVKINPQM-QRMCKGADILVATPGRLMDLYNQNAVK 144
Query: 424 MEAINLLILDE 434
+ + +L+LDE
Sbjct: 145 FDQLEILVLDE 155
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 112 (44.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
+A+ I N SQ RT +A F+ G V +LVAT +A G+DI Q V+ F+L K
Sbjct: 269 TAAAIHGNKSQGART----RALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIA 324
Query: 812 LAYIQSRGRARKPG 825
Y+ GR + G
Sbjct: 325 EDYVHRIGRTGRAG 338
Score = 65 (27.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 29/131 (22%), Positives = 56/131 (42%)
Query: 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPL 363
P QL + K+ +A +TG GKT L ++ + + + ++ A+ L P L
Sbjct: 26 PIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALILTPTREL 85
Query: 364 VYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK 423
Q + + ++ G + Q QR +LV T L+++ + +K
Sbjct: 86 AAQIQDNVMLYGRHLPLKSAVVFGGVKINPQM-QRMCKGADILVATPGRLMDLYNQNAVK 144
Query: 424 MEAINLLILDE 434
+ + +L+LDE
Sbjct: 145 FDQLEILVLDE 155
>UNIPROTKB|Q9UHL0 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007286 "spermatid development" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006406 "mRNA export from
nucleus" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0033391 "chromatoid body" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 EMBL:CH471065
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF155140 EMBL:AY735312 EMBL:AY735301 EMBL:AY735302
EMBL:AY735303 EMBL:AY735304 EMBL:AY735305 EMBL:AY735306
EMBL:AY735307 EMBL:AY735308 EMBL:AY735309 EMBL:AY735310
EMBL:AY735311 EMBL:AK312772 EMBL:BC035388 EMBL:BC050360
IPI:IPI00296139 IPI:IPI00759454 RefSeq:NP_037396.3
UniGene:Hs.420263 PDB:2RB4 PDBsum:2RB4 ProteinModelPortal:Q9UHL0
SMR:Q9UHL0 STRING:Q9UHL0 PhosphoSite:Q9UHL0 DMDM:61222937
PaxDb:Q9UHL0 PRIDE:Q9UHL0 Ensembl:ENST00000263576 GeneID:29118
KEGG:hsa:29118 UCSC:uc001qcz.4 GeneCards:GC11P125773
HGNC:HGNC:18698 HPA:HPA020090 HPA:HPA020137 MIM:607663
neXtProt:NX_Q9UHL0 PharmGKB:PA38644 InParanoid:Q9UHL0 OMA:WHFAERI
PhylomeDB:Q9UHL0 ChiTaRS:DDX25 EvolutionaryTrace:Q9UHL0
GenomeRNAi:29118 NextBio:52207 ArrayExpress:Q9UHL0 Bgee:Q9UHL0
CleanEx:HS_DDX25 Genevestigator:Q9UHL0 GermOnline:ENSG00000109832
Uniprot:Q9UHL0
Length = 483
Score = 100 (40.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 369 SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 415
Score = 78 (32.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 35/131 (26%), Positives = 60/131 (45%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+ EQ
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVV-EQ--- 189
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 190 -MGKFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKLKLIDLTKIRVFVLDE 248
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 249 ADVMIDTQGFS 259
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 113 (44.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 37/121 (30%), Positives = 55/121 (45%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K Q L IL H + A+++V V A +L + VK+ S+ G +E
Sbjct: 342 KKQKLFDILRSQNHFKP-PAVVYVSSRVGADLLANAITVVTG---VKALSIHGEKPMKER 397
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R + + F G V +LV+T V G+D+ VI FD+ T+ YI GRA +
Sbjct: 398 R-----DVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRM 452
Query: 825 G 825
G
Sbjct: 453 G 453
Score = 65 (27.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 32/138 (23%), Positives = 63/138 (45%)
Query: 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-----QNKKMLAVFLVP 359
P Q+ + A K+ +A +TG+GKT ++ I S C Q + LA+ L P
Sbjct: 135 PIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAP 194
Query: 360 KVPLVYQ---QAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI 416
L Q QA+++ + + +G D Q ++ + ++++ T ++++
Sbjct: 195 TRELCVQVEDQAKMLGKGLPFKTALV---VGGDPMSGQLYRIQQGV-ELIIGTPGRVVDL 250
Query: 417 LRHSIIKMEAINLLILDE 434
L I+++ I +LDE
Sbjct: 251 LSKHTIELDNIMTFVLDE 268
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 114 (45.2 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 46/171 (26%), Positives = 82/171 (47%)
Query: 709 LIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQ 768
L ++ K T R ++FV R A L ++ L +S L G + +QE R
Sbjct: 467 LFNLIRKLDPTGQKRIVVFVARKETAHRL-RIIMGLLGMSV---GELHG-SLTQEQRL-- 519
Query: 769 MQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828
+++ KF++ V +L+ T +A GLDI + VVI +D+ K+ Y+ GR + G +
Sbjct: 520 --DSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREG 577
Query: 829 ILMIERGNLSH-ATFLRNARNSEETLRK----EAIERT-DLSHLKDTSRLI 873
+ G S + +R A S E + +A+ R D +++T++L+
Sbjct: 578 RSVTFVGESSQDRSIVRAAIKSVEENKSLTQGKALGRNVDWVQIEETNKLV 628
Score = 68 (29.0 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 38/171 (22%), Positives = 76/171 (44%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNK--KMLAVFLVPKVPLVYQQAEVIREQT 375
K+ IA TG+GKT A +I I L + K + L+P L Q A+V ++
Sbjct: 269 KDIIAGAVTGSGKT--AAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIA 326
Query: 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI-IKMEAINLLILDE 434
+V G G Q+ Q +++ T ++ +R+S ++++ +L++DE
Sbjct: 327 RFVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDE 386
Query: 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIK 485
+++ + ++E ++ +F T +N K + S V ++K
Sbjct: 387 ADRMLEEG-FQDELNEIMGLLPSNRQNLLFSAT---MNSK-IKSLVSLSLK 432
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 114 (45.2 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 45/135 (33%), Positives = 67/135 (49%)
Query: 739 KVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQ 798
++ A+L SF K A+L G + Q R ET+ KF+ G +L+AT VA GLDI+
Sbjct: 488 EIEAQLTLNSF-KVAALHG-DKDQASR----METLQKFKSGVHHVLIATDVAARGLDIKS 541
Query: 799 CNVVIRFDLAKTVLAYIQSRGRARKPGS-D---YILMIERGNLSHATFLRNARNSEETLR 854
V+ +D+AK + ++ GR + G D Y L+ +R A F NS
Sbjct: 542 LKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQR----EARFAGELVNSLVAAG 597
Query: 855 KEAI-ERTDLSHLKD 868
+ E TDL+ +KD
Sbjct: 598 QNVPPELTDLA-MKD 611
Score = 68 (29.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 292 KSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVL-LIRSICN--DLQRQ 348
K +A EK Q + + VL ++ I +TG+GKT VL +I I + +LQR
Sbjct: 244 KKQAYEKPTAIQCQALPI-VLSG---RDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR- 298
Query: 349 NKKMLAVFLVPKVPLVYQ---QAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQV 405
++ + V P L +Q +A+ + G V G M + ++++ ++
Sbjct: 299 DEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKH----EQFKELKAGCEI 354
Query: 406 LVMTAQILLNILRHSIIKMEAINLLILDE 434
+V T L+++L+ + M + L+LDE
Sbjct: 355 VVATPGRLIDMLKMKALTMMRASYLVLDE 383
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 126 (49.4 bits), Expect = 0.00044, P = 0.00044
Identities = 42/152 (27%), Positives = 72/152 (47%)
Query: 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766
++ + +L + +D A+IFV R A VL ++ L L F + ASL H+ EM
Sbjct: 239 EAYLNSILHLEQFKDSTAVIFVNRTTTAEVLRRM---LRKLDF-RVASL--HS---EMPQ 289
Query: 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG- 825
+ ++ +F+ G +L+AT VA GLDI +VI FD+ +I GR + G
Sbjct: 290 SERTNSLHRFKAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGR 349
Query: 826 -SDYILMIERGNLSHATFLRNARNSEETLRKE 856
D + +I ++ + N + L ++
Sbjct: 350 KGDAVSIIGEKDIDRIQSIEERINKKMELLED 381
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 118 (46.6 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760
+V K+ +L ++L E F A+I R A ++ +L + F SA+ I +
Sbjct: 233 QVARKMDALTRVL----EVEPFEAMIVFVRTKQAT--EEIAEKLRARGF--SAAAISGDV 284
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGR 820
Q R + TI RDG + +LVAT VA GLD+ + + V+ +D+ +Y+ GR
Sbjct: 285 PQAQR----ERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGR 340
Query: 821 ARKPG 825
+ G
Sbjct: 341 TGRAG 345
Score = 64 (27.6 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 34/154 (22%), Positives = 64/154 (41%)
Query: 319 NTIAFLETGAGKTL-IAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+ + +TG GKT A+ ++ I D+ +K A+ LVP L Q AE Y
Sbjct: 52 DVVGLAQTGTGKTAAFAIPMLSKI--DIT--SKVPQALVLVPTRELALQVAEAFGRYGAY 107
Query: 378 VVG-HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436
+ + G + Q QV+V T +++ L + + + ++ L+LDE
Sbjct: 108 LSQLNVLPIYGGSSYAVQLAGLRRGA-QVVVGTPGRMIDHLERATLDLSRVDFLVLDEAD 166
Query: 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470
+ ++ + T + K+ ++F T P
Sbjct: 167 EMLTMG-FADDVERILSETPEYKQVALFSATMPP 199
Score = 42 (19.8 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 1162 GGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVVKASGLV----PDR--EAMQIHN 1215
GG R FG++R G F P R + + + SG++ P R +A + HN
Sbjct: 495 GGLHRS-DFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRPYRPPDAARRHN 553
Query: 1216 ADMPTGK 1222
P K
Sbjct: 554 GGKPRRK 560
>UNIPROTKB|J9NSS1 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063236 CTD:29118 EMBL:AAEX03003382
RefSeq:XP_536532.3 Ensembl:ENSCAFT00000048680 GeneID:479396
KEGG:cfa:479396 Uniprot:J9NSS1
Length = 369
Score = 100 (40.3 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 255 SGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 301
Score = 74 (31.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 32/131 (24%), Positives = 57/131 (43%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+
Sbjct: 23 QNLIAQSQSGTGKTAAFVLAMLSRVNTLELFPQ---CLCLAPTYELALQTGRVVER---- 75
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 76 -MGKFCVDVQVMYAIRGNHIPRGTDVTKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 134
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 135 ADVMIDTQGFS 145
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 110 (43.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
EM + I++FR+G V +L+AT VA G+D+ + VI FDL ++ Y+ GR
Sbjct: 279 EMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTG 338
Query: 823 KPG 825
+ G
Sbjct: 339 RAG 341
Score = 65 (27.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 38/147 (25%), Positives = 58/147 (39%)
Query: 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
EA E+M + Q + + QA ++ +A TG GKT V+ D R+
Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGP 75
Query: 353 LAVF-LVPKVPLVYQ---QAEVIREQTGYVVGHYCGEMG-QDFWDAQRWQREFDTKQVLV 407
+ L P L Q QA+ + + T + G + Q+ D T+ ++V
Sbjct: 76 ARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA-----TTQDIVV 130
Query: 408 MTAQILLNILRHSIIKMEAINLLILDE 434
T LL + AI LILDE
Sbjct: 131 ATPGRLLEYIDAERFDCRAIEWLILDE 157
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 110 (43.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
EM + I++FR+G V +L+AT VA G+D+ + VI FDL ++ Y+ GR
Sbjct: 279 EMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTG 338
Query: 823 KPG 825
+ G
Sbjct: 339 RAG 341
Score = 65 (27.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 38/147 (25%), Positives = 58/147 (39%)
Query: 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKM 352
EA E+M + Q + + QA ++ +A TG GKT V+ D R+
Sbjct: 16 EAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRKAGP 75
Query: 353 LAVF-LVPKVPLVYQ---QAEVIREQTGYVVGHYCGEMG-QDFWDAQRWQREFDTKQVLV 407
+ L P L Q QA+ + + T + G + Q+ D T+ ++V
Sbjct: 76 ARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILA-----TTQDIVV 130
Query: 408 MTAQILLNILRHSIIKMEAINLLILDE 434
T LL + AI LILDE
Sbjct: 131 ATPGRLLEYIDAERFDCRAIEWLILDE 157
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 103 (41.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 44/161 (27%), Positives = 71/161 (44%)
Query: 670 NEIEEGELLDS-HVVSG---GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAI 725
NEI L + HV G EH D+ + D + K L ++L H + I
Sbjct: 195 NEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCD-HLDHKEALLSRLLSDESHKQ---VI 250
Query: 726 IFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLV 785
IF ++ A+L + F +A+L G E++ + + +F G+ +LV
Sbjct: 251 IFT---ATRADTERLAAKLSAQGFA-TAALSG-----ELKQAARNQIMDQFARGQQQILV 301
Query: 786 ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
T VA GLD+ ++VI FD+ K Y+ GR + G+
Sbjct: 302 TTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGA 342
Score = 73 (30.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 42/141 (29%), Positives = 66/141 (46%)
Query: 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVL--LIRSICND-LQRQNKKMLAVFL 357
+EQA P L K+ +A +TG+GKTL +L L R I L +++ ++L L
Sbjct: 28 QEQALPIAL------AGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDPRVL--IL 79
Query: 358 VPKVPL---VYQQAEVIREQTGYVVGHYCGEMGQDFWD-AQRWQREFDTKQVLVMTAQIL 413
+P L VY Q ++ T Y G G++F D A+ +E +V T +
Sbjct: 80 LPTRELAHQVYSQLRLLVANTQYKAISVLG--GENFNDQAKALAKE---PHFIVATPGRI 134
Query: 414 LNILRHSIIKMEAINLLILDE 434
+ L + + + LLILDE
Sbjct: 135 ADHLEQKNLFLNGLELLILDE 155
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 103 (41.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 44/161 (27%), Positives = 71/161 (44%)
Query: 670 NEIEEGELLDS-HVVSG---GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAI 725
NEI L + HV G EH D+ + D + K L ++L H + I
Sbjct: 195 NEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCD-HLDHKEALLSRLLSDESHKQ---VI 250
Query: 726 IFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLV 785
IF ++ A+L + F +A+L G E++ + + +F G+ +LV
Sbjct: 251 IFT---ATRADTERLAAKLSAQGFA-TAALSG-----ELKQAARNQIMDQFARGQQQILV 301
Query: 786 ATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826
T VA GLD+ ++VI FD+ K Y+ GR + G+
Sbjct: 302 TTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGA 342
Score = 73 (30.8 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 42/141 (29%), Positives = 66/141 (46%)
Query: 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVL--LIRSICND-LQRQNKKMLAVFL 357
+EQA P L K+ +A +TG+GKTL +L L R I L +++ ++L L
Sbjct: 28 QEQALPIAL------AGKDLMASSKTGSGKTLAFLLPALQRVISTRALSKRDPRVL--IL 79
Query: 358 VPKVPL---VYQQAEVIREQTGYVVGHYCGEMGQDFWD-AQRWQREFDTKQVLVMTAQIL 413
+P L VY Q ++ T Y G G++F D A+ +E +V T +
Sbjct: 80 LPTRELAHQVYSQLRLLVANTQYKAISVLG--GENFNDQAKALAKE---PHFIVATPGRI 134
Query: 414 LNILRHSIIKMEAINLLILDE 434
+ L + + + LLILDE
Sbjct: 135 ADHLEQKNLFLNGLELLILDE 155
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 105 (42.0 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 39/143 (27%), Positives = 66/143 (46%)
Query: 695 AAVADGKVTPKVQSLIKILLKY--QHTEDFRAIIFVERVVAALVLPKVFAEL-PSLSFVK 751
A + + ++Q I +L + H + ++I+F L +VF L P +S +
Sbjct: 286 ATLEQNYIVCELQQKISVLYSFLRSHLKK-KSIVFFSSCKEVQYLYRVFCRLRPGVSLL- 343
Query: 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811
+L H Q+MR ++ +F R +L AT +A GLD N V++FD +
Sbjct: 344 --AL--HGRQQQMRRMEVYN---EFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDA 396
Query: 812 LAYIQSRGR-AR-KPGSDYILMI 832
YI GR AR K + +L++
Sbjct: 397 NTYIHRAGRTARYKEDGEALLIL 419
Score = 83 (34.3 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 41/157 (26%), Positives = 70/157 (44%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PKVPLVYQQAEVIRE--- 373
K+ + +TG+GKTL ++ + LQ + L V ++ P L YQ EV+R+
Sbjct: 107 KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGK 166
Query: 374 QTGYVVGHYCGEMGQDF-WDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINL--L 430
+ G G G+D +A+R + +LV T LL + +I A NL L
Sbjct: 167 NHDFSAGLIIG--GKDLKHEAER----INNINILVCTPGRLLQHMDETIC-FHATNLQML 219
Query: 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467
+LDE + ++ M+ K+++ +F T
Sbjct: 220 VLDEADRILDMG-FADTMNAIIENLPKKRQTLLFSAT 255
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(3) = 0.00050
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 1441 VSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTK 1483
VS L + YALS GL + RF P V ED K
Sbjct: 491 VSKLPISDYALSLGL-AVAPRIRFLQRMQKQPSKELVVSEDNK 532
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 122 (48.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 37/101 (36%), Positives = 52/101 (51%)
Query: 725 IIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784
IIFV + A VL K L L + S +L G QE R + +A + G +L
Sbjct: 670 IIFVNQKKGADVLAK---GLEKLGY-NSCTLHG-GKGQEQREY----ALAALKSGAKDIL 720
Query: 785 VATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
VAT VA G+DI+ ++VI +D+AKT+ Y GR + G
Sbjct: 721 VATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAG 761
Score = 60 (26.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 32/151 (21%), Positives = 68/151 (45%)
Query: 297 EKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKTL--IAVLL--IRSI--CNDLQRQN 349
+K+ ++ P Q + + ++ I ETG+GKTL + LL I+S+ L+ +
Sbjct: 410 DKVGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVD 469
Query: 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVG-HYCGEMGQDFWDAQRWQREFDTKQVLVM 408
+ A+ + P L QQ E + G +G +G + Q ++ ++++
Sbjct: 470 QGPYAIIMAPTRELA-QQIEEETTKFGQPLGIRTVVVVGGLSREEQGFRLRLGC-EIVIA 527
Query: 409 TAQILLNILRHSIIKMEAINLLILDECHHAV 439
T L+++L + + + ++LDE +
Sbjct: 528 TPGRLIDVLENRYLVLNQCTYIVLDEADRMI 558
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 86 (35.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/201 (20%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K++ + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 86 (35.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/201 (20%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K++ + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 86 (35.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/201 (20%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K++ + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 86 (35.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/201 (20%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K++ + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 86 (35.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/201 (20%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K++ + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 91 (37.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+MR FR+G LV T + G+DI+ NVVI FD K Y+ GR+
Sbjct: 367 KMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSG 426
Query: 823 KPG 825
+ G
Sbjct: 427 RFG 429
Score = 86 (35.3 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 42/201 (20%), Positives = 98/201 (48%)
Query: 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKMLAV 355
+M E+ P Q + + A ++ +A + G GK+ + L+ + DL++ N + A+
Sbjct: 113 EMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL--DLKKDN--IQAM 168
Query: 356 FLVPKVPLVYQQAEVIREQTGYVVGH--YCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL 413
+VP L Q +++ + + ++ G G + D R DT V++ T +
Sbjct: 169 VIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI--MRLDDTVHVVIATPGRI 226
Query: 414 LNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNL 473
L++++ + K++ + +++LDE + + + +M + T K ++ ++ T P+++
Sbjct: 227 LDLIKKGVAKVDHVQMIVLDEADKLLSQD-FVQIMEDIILTLPKNRQILLYSATF-PLSV 284
Query: 474 -KGVSSQVDCAIKICNLESKL 493
K ++S + +I NL +L
Sbjct: 285 QKFMNSHLQKPYEI-NLMEEL 304
>UNIPROTKB|F1PIZ6 [details] [associations]
symbol:DDX25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:WHFAERI
EMBL:AAEX03003382 Ensembl:ENSCAFT00000016722 Uniprot:F1PIZ6
Length = 462
Score = 102 (41.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V+ G+D++Q +V+ FDL
Sbjct: 348 SGELTVDQRASIIQRFRDGKEKVLITTNVSRRGIDVKQVTIVVNFDL 394
Score = 74 (31.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 32/131 (24%), Positives = 57/131 (43%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+
Sbjct: 116 QNLIAQSQSGTGKTAAFVLAMLSRVNTLELFPQ---CLCLAPTYELALQTGRVVER---- 168
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 169 -MGKFCVDVQVMYAIRGNHIPRGTDVTKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 227
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 228 ADVMIDTQGFS 238
>UNIPROTKB|F1RVF0 [details] [associations]
symbol:LOC100512980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000063236 OMA:ESATTFE
Ensembl:ENSSSCT00000012145 Uniprot:F1RVF0
Length = 462
Score = 97 (39.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 350 ELTVDQRAAIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 394
Score = 79 (32.9 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 33/131 (25%), Positives = 58/131 (44%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+
Sbjct: 116 QNLIAQSQSGTGKTAAFVLAMLSRVNALELFPQ---CLCLAPTYELALQTGRVVER---- 168
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 169 -MGRFCVDVQVMYAIRGNRIPRGTDITKQIIIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 227
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 228 ADVMIDTQGFS 238
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 110 (43.8 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
Q E + +F+D ++ +LVAT VA GLDI VI F + TV Y+ GR + G
Sbjct: 467 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAG 524
Score = 61 (26.5 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 39/164 (23%), Positives = 63/164 (38%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
K+ A TG GKT L + RQ + LVP L Q V ++ +
Sbjct: 222 KDICACAATGTGKTAAFALPVLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQF 281
Query: 378 VVGHYCGEMGQ-DFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDEC 435
C +G D + R +L+ T L++ L + + +I +LILDE
Sbjct: 282 CSITTCLAVGGLDVKSQEAALRA--APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEA 339
Query: 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFG--MTASPVNLKGVS 477
+ ++ + M E S ++ +F MT +L VS
Sbjct: 340 DRMLDEY-FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVS 382
Score = 57 (25.1 bits), Expect = 0.00058, Sum P(3) = 0.00058
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 115 VDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDR-- 172
V ++RK E+ E +G V K G SD +EN + G+ D ++ D+ SED
Sbjct: 93 VRKRRKAEDKEAKSGK-VEEKEGQADSDLKGQENPGEDEAGSKDEDSET--DYSSEDEEI 149
Query: 173 FSKRARVSVCKNESQYSSRGQ 193
+K + V E + +GQ
Sbjct: 150 LTKADTLKV--KEKKKKKKGQ 168
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 100 (40.3 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+FR G+V LV + + G+DI+ NVVI FD KT Y+ GR+ + G
Sbjct: 312 EFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 362
Score = 77 (32.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 39/157 (24%), Positives = 68/157 (43%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQN-KKMLAVFLVP 359
E+ P Q + + A ++ +A + G GKT A +I C L + K+ A+ LVP
Sbjct: 51 EKPSPIQEESIPMALAGRDILARAKNGTGKT--ASFIIP--CLQLVKPKLNKVQALILVP 106
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEM--GQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
L Q ++V+R G VG C G D R D +LV T +L++
Sbjct: 107 TRELALQTSQVVRT-LGKHVGTQCMVTTGGTSLRDDI--VRLHDPVHILVGTPGRVLDLA 163
Query: 418 RHSIIKMEAINLLILDECHHAVKKHPYSLV--MSEFY 452
++ + L ++DE + + ++ + EF+
Sbjct: 164 ARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFF 200
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 100 (40.3 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+FR G+V LV + + G+DI+ NVVI FD KT Y+ GR+ + G
Sbjct: 312 EFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 362
Score = 77 (32.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 39/157 (24%), Positives = 68/157 (43%)
Query: 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQN-KKMLAVFLVP 359
E+ P Q + + A ++ +A + G GKT A +I C L + K+ A+ LVP
Sbjct: 51 EKPSPIQEESIPMALAGRDILARAKNGTGKT--ASFIIP--CLQLVKPKLNKVQALILVP 106
Query: 360 KVPLVYQQAEVIREQTGYVVGHYCGEM--GQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417
L Q ++V+R G VG C G D R D +LV T +L++
Sbjct: 107 TRELALQTSQVVRT-LGKHVGTQCMVTTGGTSLRDDI--VRLHDPVHILVGTPGRVLDLA 163
Query: 418 RHSIIKMEAINLLILDECHHAVKKHPYSLV--MSEFY 452
++ + L ++DE + + ++ + EF+
Sbjct: 164 ARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFF 200
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 121 (47.7 bits), Expect = 0.00070, P = 0.00070
Identities = 38/122 (31%), Positives = 61/122 (50%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K + L++IL ++ D R ++FVE A + + + + S+ G +E
Sbjct: 94 KREKLVEIL---RNIGDERTMVFVETKKKADFIATFLCQ----EKISTTSIHG---DREQ 143
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R + ++ + FR G+ +LVATSVA GLDI VI FDL T+ Y+ GR +
Sbjct: 144 R--EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRC 201
Query: 825 GS 826
G+
Sbjct: 202 GN 203
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 112 (44.5 bits), Expect = 0.00070, Sum P(4) = 0.00070
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 744 LPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVI 803
L L +K L G N SQ R E++ +F+D ++ +LVAT VA GLDI VI
Sbjct: 465 LLGLMGLKVGELHG-NLSQTQRL----ESLRRFKDEQIDILVATDVAARGLDIEGVKTVI 519
Query: 804 RFDLAKTVLAYIQSRGRARKPG 825
F + TV Y+ GR + G
Sbjct: 520 NFTMPNTVKHYVHRVGRTARAG 541
Score = 75 (31.5 bits), Expect = 0.00070, Sum P(4) = 0.00070
Identities = 42/165 (25%), Positives = 71/165 (43%)
Query: 318 KNTIAFLETGAGKTLIAVL--LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375
K+ A TG GKT +L L R I + Q ++L LVP L Q V R+
Sbjct: 239 KDICACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLV--LVPTRELGIQVHTVARQLA 296
Query: 376 GYVVGHYCGEMGQ-DFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILD 433
+ C +G D + R VL+ T L++ L ++ ++ I +LILD
Sbjct: 297 QFTTISTCLAVGGLDLKSQEAALRA--GPDVLIATPGRLIDHLHNTPSFELSQIEILILD 354
Query: 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSS 478
E + ++ + M E + +++ +F T S +K ++S
Sbjct: 355 EADRMLDEY-FEEQMKEIIRMCAYQRQTMLFSATMSE-EVKDLAS 397
Score = 46 (21.3 bits), Expect = 0.00070, Sum P(4) = 0.00070
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 816 QSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLK 867
+ + R K D+ L + RG A FL+ + E T A ER L LK
Sbjct: 640 RKKDRMAKALQDFDLAL-RGKKKRAQFLKQGKRKELT----AEERAQLEVLK 686
Score = 38 (18.4 bits), Expect = 0.00070, Sum P(4) = 0.00070
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 153 DNGNNDHEASRIR-----DFDSEDRFS 174
DN +D++A + D D ED FS
Sbjct: 133 DNDADDNDADEVSGGGDDDDDDEDEFS 159
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 94 (38.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K Q+L+ +L ++Q + ++F+ A L K +L V A+++ + SQ
Sbjct: 245 KTQALVALLKQHQWPQ---VLVFIGAKENADSLTK---KLNKAGIV--ATVLHGDKSQSE 296
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R + +A+F++G +L+AT + G+ I VVI F+L Y+ GR +
Sbjct: 297 R----EAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARA 352
Query: 825 GSDYILM 831
G I +
Sbjct: 353 GQHGIAL 359
Score = 80 (33.2 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 43/166 (25%), Positives = 69/166 (41%)
Query: 277 EANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVL---EQAKKKNTIAFLETGAGKTLI 333
E +GI + ++ + +P+ P + L K+ A TG+GKTL
Sbjct: 16 EYSGIQPMSFSSLALSADLIQALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLA 75
Query: 334 AVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH----YCGEMGQ 388
L L+ + ++Q A+ LVP L Q +EV+ G +G CG G
Sbjct: 76 YGLPLLERLKTSPEQQ-----ALVLVPTRELAMQVSEVLTH-VGTALGLNTLCLCG--GV 127
Query: 389 DFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
D + Q E +LV T L + L S +++ + L+LDE
Sbjct: 128 DKTEQQNALAE--NPNILVATTGRLFD-LTQSGLRLNRVTTLVLDE 170
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 94 (38.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 33/127 (25%), Positives = 60/127 (47%)
Query: 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764
K Q+L+ +L ++Q + ++F+ A L K +L V A+++ + SQ
Sbjct: 245 KTQALVALLKQHQWPQ---VLVFIGAKENADSLTK---KLNKAGIV--ATVLHGDKSQSE 296
Query: 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824
R + +A+F++G +L+AT + G+ I VVI F+L Y+ GR +
Sbjct: 297 R----EAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARA 352
Query: 825 GSDYILM 831
G I +
Sbjct: 353 GQHGIAL 359
Score = 80 (33.2 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 43/166 (25%), Positives = 69/166 (41%)
Query: 277 EANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVL---EQAKKKNTIAFLETGAGKTLI 333
E +GI + ++ + +P+ P + L K+ A TG+GKTL
Sbjct: 16 EYSGIQPMSFSSLALSADLIQALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLA 75
Query: 334 AVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH----YCGEMGQ 388
L L+ + ++Q A+ LVP L Q +EV+ G +G CG G
Sbjct: 76 YGLPLLERLKTSPEQQ-----ALVLVPTRELAMQVSEVLTH-VGTALGLNTLCLCG--GV 127
Query: 389 DFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
D + Q E +LV T L + L S +++ + L+LDE
Sbjct: 128 DKTEQQNALAE--NPNILVATTGRLFD-LTQSGLRLNRVTTLVLDE 170
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 89 (36.4 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 49/201 (24%), Positives = 86/201 (42%)
Query: 294 EAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKT-LIAVLLIRSICNDLQRQNKKM 352
E K K P + R + V Q K + I ETG+GKT A+ ++ ++ + QR
Sbjct: 78 ELKWKAPSKIQRE-AIPVALQGK--DVIGLAETGSGKTGAFALPILHALLENPQRY---- 130
Query: 353 LAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEM--GQDFWDAQRWQREFDTKQVLVMTA 410
A+ L P L +Q E E G +G C + G D AQ Q +++ T
Sbjct: 131 FALVLTPTRELAFQIGEQF-EALGSGIGIKCCVVVGGMDMV-AQGLQLA-KKPHIIIATP 187
Query: 411 QILLNILRHSI-IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFG--MT 467
L++ L + ++AI L++DE + + + + + +E+R +F MT
Sbjct: 188 GRLVDHLENMKGFNLKAIKYLVMDEADRILNMD-FEVELDKILKVLPRERRTFLFSATMT 246
Query: 468 ASPVNLKGVSSQVDCAIKICN 488
L+ S + +++ N
Sbjct: 247 KKVKKLQRASLKDPVKVEVSN 267
Score = 87 (35.7 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
KF+ ++L++T VA GLDI +VV+ FD+ YI GR + G
Sbjct: 345 KFKAKNRSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAG 395
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 95 (38.5 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/63 (30%), Positives = 37/63 (58%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
+M+ + + + FR G +L++T V G+D++Q ++VI +DL + + YI GR+
Sbjct: 298 DMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSG 357
Query: 823 KPG 825
+ G
Sbjct: 358 RFG 360
Score = 78 (32.5 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 28/119 (23%), Positives = 61/119 (51%)
Query: 318 KNTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376
K+ IA ++G GKT + L+++I DL++ K + A+ L P L Q +V++
Sbjct: 61 KDVIAQAQSGTGKTATFTIGLLQAI--DLRK--KDLQALILSPTRELASQIGQVVKNLGD 116
Query: 377 YV-VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
Y+ V + G+ D + ++ + V ++L ++++ +++ + +L+LDE
Sbjct: 117 YMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVL-DMIKKQMLQTRNVQMLVLDE 174
>UNIPROTKB|F1MSI6 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003676 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000063236
IPI:IPI00724449 OMA:WHFAERI EMBL:DAAA02063102
Ensembl:ENSBTAT00000005587 Uniprot:F1MSI6
Length = 483
Score = 100 (40.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 369 SGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 415
Score = 75 (31.5 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ---CLCLAPTYELALQTGRVVER---- 189
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 190 -MGKFCVDVQVMYAIRGNRIPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 248
>UNIPROTKB|Q2TBP1 [details] [associations]
symbol:DDX25 "ATP-dependent RNA helicase DDX25"
species:9913 "Bos taurus" [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0033391
"chromatoid body" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0007286 "spermatid
development" evidence=ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0006417 GO:GO:0007286
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q9UHL0
HOVERGEN:HBG107989 EMBL:BC109867 IPI:IPI00724449
RefSeq:NP_001033606.1 UniGene:Bt.14611 ProteinModelPortal:Q2TBP1
SMR:Q2TBP1 PRIDE:Q2TBP1 GeneID:508962 KEGG:bta:508962 CTD:29118
InParanoid:Q2TBP1 OrthoDB:EOG4NS3BD NextBio:20868762 Uniprot:Q2TBP1
Length = 483
Score = 100 (40.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 369 SGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 415
Score = 75 (31.5 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + S N L+ + + L P L Q V+
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQ---CLCLAPTYELALQTGRVVER---- 189
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 190 -MGKFCVDVQVMYAIRGNRIPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 248
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 105 (42.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
+ SA++ G N SQ R + +F+ G++ +LVAT VA GLDI + VI F+L
Sbjct: 281 LSSAAIHG-NKSQAAR----MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPD 335
Query: 810 TVLAYIQSRGRARKPGSD 827
Y+ GR + +D
Sbjct: 336 AAKDYVHRVGRTGRASND 353
Score = 68 (29.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 41/165 (24%), Positives = 69/165 (41%)
Query: 277 EANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKT--LIA 334
E G++ E + ++ + + QA P V+ QA+ + + +TG GKT
Sbjct: 13 EVLGLSAELLRAIREQGYVEPTPVQRQAIP----VILQAR--DVMVTAQTGTGKTAGFTL 66
Query: 335 VLLIRSICN--DLQRQNKKML-AVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFW 391
LL R + LQR K ++ A+ L P L Q E +R Y+ G
Sbjct: 67 PLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSI 126
Query: 392 DAQ--RWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
Q +R D +LV T LL+++ ++ + + +LDE
Sbjct: 127 KPQINHLRRGVD---ILVATPGRLLDLVNQGVLNLSRVEFFVLDE 168
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 105 (42.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK 809
+ SA++ G N SQ R + +F+ G++ +LVAT VA GLDI + VI F+L
Sbjct: 281 LSSAAIHG-NKSQAAR----MRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPD 335
Query: 810 TVLAYIQSRGRARKPGSD 827
Y+ GR + +D
Sbjct: 336 AAKDYVHRVGRTGRASND 353
Score = 68 (29.0 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 41/165 (24%), Positives = 69/165 (41%)
Query: 277 EANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKT--LIA 334
E G++ E + ++ + + QA P V+ QA+ + + +TG GKT
Sbjct: 13 EVLGLSAELLRAIREQGYVEPTPVQRQAIP----VILQAR--DVMVTAQTGTGKTAGFTL 66
Query: 335 VLLIRSICN--DLQRQNKKML-AVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFW 391
LL R + LQR K ++ A+ L P L Q E +R Y+ G
Sbjct: 67 PLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSI 126
Query: 392 DAQ--RWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434
Q +R D +LV T LL+++ ++ + + +LDE
Sbjct: 127 KPQINHLRRGVD---ILVATPGRLLDLVNQGVLNLSRVEFFVLDE 168
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 109 (43.4 bits), Expect = 0.00081, Sum P(4) = 0.00081
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
Q E + +F+D ++ +LVAT VA GLDI VI F + T+ Y+ GR + G
Sbjct: 501 QRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAG 558
Score = 63 (27.2 bits), Expect = 0.00081, Sum P(4) = 0.00081
Identities = 40/164 (24%), Positives = 63/164 (38%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
K+ A TG GKT L + RQ + LVP L Q V R+ +
Sbjct: 256 KDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQF 315
Query: 378 VVGHYCGEMGQ-DFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDEC 435
C +G D + R +L+ T L++ L + + +I +LILDE
Sbjct: 316 CNITTCLAVGGLDVKSQEAALRA--APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEA 373
Query: 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFG--MTASPVNLKGVS 477
+ ++ + M E S ++ +F MT +L VS
Sbjct: 374 DRMLDEY-FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVS 416
Score = 58 (25.5 bits), Expect = 0.00081, Sum P(4) = 0.00081
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 115 VDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDR-- 172
V +KRK E+ E +G L K S+ +E+ D ++ EAS D+ S D
Sbjct: 124 VRKKRKTEDKEAKSGKLEKEKEAKEGSEPKEQEDLQENDEEGSEDEASET-DYSSADENI 182
Query: 173 FSKRARVSVCKNESQYSSRGQ 193
+K + V K+ + +GQ
Sbjct: 183 LTKADTLKV-KDRKKKKKKGQ 202
Score = 41 (19.5 bits), Expect = 0.00081, Sum P(4) = 0.00081
Identities = 22/86 (25%), Positives = 36/86 (41%)
Query: 1410 DAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRW 1469
D L+ R F+K +K +G++T + L +A + + +R A
Sbjct: 672 DLALRGKKKRKKFMKDAKK-KGEMTAEERSQFEILKAQMFA-----ERLAKRNRRAKRAR 725
Query: 1470 AAPGVLPVFD--EDTKDGDSSLFDQE 1493
A P PV + K G S+FD+E
Sbjct: 726 AMPEEEPVRGPAKKQKQGKKSVFDEE 751
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 98 (39.6 bits), Expect = 0.00084, Sum P(4) = 0.00084
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822
++ Q + I + + G+ ++LVAT V GLDI + ++VI +DL AY+ GR
Sbjct: 287 DLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTG 346
Query: 823 KPGSD 827
+ G +
Sbjct: 347 RAGRE 351
Score = 78 (32.5 bits), Expect = 0.00084, Sum P(4) = 0.00084
Identities = 33/121 (27%), Positives = 56/121 (46%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI----RE 373
K+ + +TG GKT A + ++ + KK + L P L Q AE I ++
Sbjct: 53 KDVLGEAQTGTGKT--AAFGLPALAK-IDTSIKKPQLMVLAPTRELAMQVAEAIESFGKD 109
Query: 374 QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433
G V G GQ + ++Q+ QV+V T L++ LR +K++ + + +LD
Sbjct: 110 MKGLRVATLYG--GQSY--GPQFQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLD 165
Query: 434 E 434
E
Sbjct: 166 E 166
Score = 46 (21.3 bits), Expect = 0.00084, Sum P(4) = 0.00084
Identities = 31/145 (21%), Positives = 69/145 (47%)
Query: 472 NLKGVSSQVDCAIKICNLESKLDSV-VCTIKDRKELEKHVPMPSEVVV-EYDKAASLWSL 529
+L+ S ++D +++C L+ + + + ++D + + H+P +++ + ++ +
Sbjct: 148 HLRRKSLKLD-ELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKI 206
Query: 530 HEQ-LKQME---VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQV--YG---VSERTESD 580
+ LK E VA + A+++ + W+ G A E + +V Y + RT +D
Sbjct: 207 ANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRND 266
Query: 581 GAANLIQKLRAINY-AL---GELGQ 601
++ +KL Y AL G+L Q
Sbjct: 267 -TVDIAEKLERAGYPALALNGDLNQ 290
Score = 44 (20.5 bits), Expect = 0.00084, Sum P(4) = 0.00084
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 845 NARNSEETLRKEAIERTDLSHLKDTSRL-ISVD--AVPGTVYQVESTGAVVSLNSA-VGL 900
N N +E RK + R+D+ T RL + + A PG + V + +SL+S+ +G
Sbjct: 495 NRSNRDEKPRKAKVNRSDVDW--QTYRLEVGKEHGARPGDI--VGAIANEISLDSSYIGA 550
Query: 901 IHFY 904
I+ +
Sbjct: 551 INLH 554
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 115 (45.5 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 35/107 (32%), Positives = 53/107 (49%)
Query: 725 IIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784
IIFV + VL K L + + + +L G QE R F + A +D +L
Sbjct: 655 IIFVNQKKGCDVLAK---SLEKMGY-NACTLHG-GKGQEQREFALSNLKAGAKD----IL 705
Query: 785 VATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM 831
VAT VA G+DI+ ++V+ +D+AK + YI GR + G + M
Sbjct: 706 VATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAM 752
Score = 60 (26.2 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 33/154 (21%), Positives = 68/154 (44%)
Query: 294 EAKEKMPEEQARPYQLDVLEQA-KKKNTIAFLETGAGKT---LIAVLL-IRSI--CNDLQ 346
E EK + P Q + + ++ I ETG+GKT LI +L+ I ++ + ++
Sbjct: 391 EVIEKCGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIE 450
Query: 347 RQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG-HYCGEMGQDFWDAQRWQREFDTKQV 405
++ A+ L P L QQ E + G +G +G + Q ++ ++
Sbjct: 451 DSDQGPYAIILAPTRELA-QQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGC-EI 508
Query: 406 LVMTAQILLNILRHSIIKMEAINLLILDECHHAV 439
++ T L+++L + + + ++LDE +
Sbjct: 509 VIATPGRLIDVLENRYLVLSRCTYVVLDEADRMI 542
Score = 52 (23.4 bits), Expect = 0.00087, Sum P(3) = 0.00087
Identities = 26/96 (27%), Positives = 36/96 (37%)
Query: 90 DSTGGENHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENG 149
DS G E + S K R+RK K+ R D K+
Sbjct: 11 DSAGKERESRKRSRSRSRERDRKGSPGRERKRHRSRERKRSRSRSKSPDR--DRRLKDKD 68
Query: 150 VHRDNGNNDHEASRIRDFDSEDRFSKRARVSVCKNE 185
RD D E R RD +DR SK++R + K++
Sbjct: 69 RDRDRSRKDRE--RERDRRDKDR-SKKSRSASPKSK 101
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 109 (43.4 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 736 VLPKVFAELPSLSFVK--SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEG 793
VLP+ + F + +A + QE R F + A +D +LVAT VA G
Sbjct: 653 VLPRAHCSFFTSPFFQQYNACTLHGGKGQEQREFALSNLKAGAKD----ILVATDVAGRG 708
Query: 794 LDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825
+DI+ ++V+ +D+AK + YI GR + G
Sbjct: 709 IDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAG 740
Score = 60 (26.2 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 35/152 (23%), Positives = 69/152 (45%)
Query: 296 KEKMP-EEQARPYQLDVLEQAKKKNTIAFLETGAGKT---LIAVLL-IRSI--CNDLQRQ 348
KE P + QA P L + ++ I ETG+GKT LI +L+ I ++ + ++
Sbjct: 412 KEPTPIQRQAIPIGL------QNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEES 465
Query: 349 NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG-HYCGEMGQDFWDAQRWQREFDTKQVLV 407
++ A+ L P L QQ E + G +G +G + Q ++ ++++
Sbjct: 466 DQGPYAIILAPTRELA-QQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGC-EIVI 523
Query: 408 MTAQILLNILRHSIIKMEAINLLILDECHHAV 439
T L+++L + + + ++LDE +
Sbjct: 524 ATPGRLIDVLENRYLVLSRCTYVVLDEADRMI 555
Score = 58 (25.5 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 135 KAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDSEDRFSKR---ARVSVCKNESQYSSR 191
+ GG S ++ RD + + E + RD + +DR + R K S R
Sbjct: 53 RRGGSRSRSRSRSKSTERDRRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGR 112
Query: 192 GQYCSSDKDRVF 203
G+ S KDR F
Sbjct: 113 GKDFKSRKDRDF 124
>RGD|68381 [details] [associations]
symbol:Ddx25 "DEAD (Asp-Glu-Ala-Asp) box helicase 25"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006200 "ATP catabolic
process" evidence=ISO;IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO;ISS] [GO:0006417 "regulation of translation"
evidence=IEA;ISO;ISS] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA;ISO;ISS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0033391 "chromatoid body" evidence=IEA;ISO;ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:68381
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0006417
GO:GO:0007286 GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0033391 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 CTD:29118 OrthoDB:EOG4NS3BD
EMBL:AF142629 IPI:IPI00213497 IPI:IPI00760145 IPI:IPI00760150
RefSeq:NP_113818.2 UniGene:Rn.224821 ProteinModelPortal:Q9QY16
SMR:Q9QY16 STRING:Q9QY16 PRIDE:Q9QY16 GeneID:58856 KEGG:rno:58856
UCSC:RGD:68381 InParanoid:Q9QY16 NextBio:611449 ArrayExpress:Q9QY16
Genevestigator:Q9QY16 GermOnline:ENSRNOG00000012260 Uniprot:Q9QY16
Length = 483
Score = 100 (40.3 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL 807
S E+ Q I +FRDG+ +L+ T+V G+D++Q +V+ FDL
Sbjct: 369 SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDL 415
Score = 74 (31.1 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 32/131 (24%), Positives = 58/131 (44%)
Query: 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377
+N IA ++G GKT VL + + N L+ + + L P L Q V+
Sbjct: 137 QNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQ---CLCLAPTYELALQTGRVVER---- 189
Query: 378 VVGHYCGEMGQDFW-DAQRWQREFD-TKQVLVMTAQILLN-ILRHSIIKMEAINLLILDE 434
+G +C ++ + R R D TKQ+++ T +L+ + +I + I + +LDE
Sbjct: 190 -MGKFCVDVEVMYAIRGNRIPRGTDVTKQIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDE 248
Query: 435 CHHAVKKHPYS 445
+ +S
Sbjct: 249 ADVMIDTQGFS 259
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1931 1839 0.00096 125 3 11 22 0.41 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 218
No. of states in DFA: 636 (68 KB)
Total size of DFA: 740 KB (2317 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 152.43u 0.40s 152.83t Elapsed: 00:00:08
Total cpu time: 152.50u 0.40s 152.90t Elapsed: 00:00:08
Start: Fri May 10 06:21:08 2013 End: Fri May 10 06:21:16 2013
WARNINGS ISSUED: 1