Query 000174
Match_columns 1931
No_of_seqs 1008 out of 6175
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 21:57:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0701 dsRNA-specific nucleas 100.0 7.4E-70 1.6E-74 719.3 17.5 1513 18-1927 11-1600(1606)
2 COG1111 MPH1 ERCC4-like helica 100.0 1.3E-50 2.8E-55 474.2 47.9 475 299-856 11-501 (542)
3 KOG0354 DEAD-box like helicase 100.0 4.2E-46 9.2E-51 462.5 42.9 483 299-860 58-551 (746)
4 KOG0331 ATP-dependent RNA heli 100.0 5.3E-47 1.1E-51 459.1 33.0 342 283-830 93-441 (519)
5 KOG0330 ATP-dependent RNA heli 100.0 7.2E-47 1.6E-51 425.4 28.0 355 280-855 60-421 (476)
6 KOG1817 Ribonuclease [RNA proc 100.0 1E-45 2.3E-50 417.9 21.6 410 1336-1829 8-503 (533)
7 KOG0333 U5 snRNP-like RNA heli 100.0 1.4E-43 3E-48 411.0 25.6 367 281-836 245-625 (673)
8 KOG0338 ATP-dependent RNA heli 100.0 1.8E-43 3.8E-48 408.0 24.6 355 280-844 180-539 (691)
9 KOG0340 ATP-dependent RNA heli 100.0 7.5E-43 1.6E-47 388.6 27.5 358 280-854 6-374 (442)
10 PTZ00110 helicase; Provisional 100.0 1.1E-41 2.4E-46 439.5 41.7 347 281-835 130-484 (545)
11 COG0513 SrmB Superfamily II DN 100.0 9.8E-42 2.1E-46 435.5 34.9 341 281-832 29-375 (513)
12 KOG0342 ATP-dependent RNA heli 100.0 2.2E-42 4.8E-47 401.3 25.8 344 292-846 93-445 (543)
13 PRK04837 ATP-dependent RNA hel 100.0 5.9E-41 1.3E-45 425.0 34.8 342 281-832 8-357 (423)
14 KOG0345 ATP-dependent RNA heli 100.0 5.8E-41 1.3E-45 385.9 28.0 338 290-834 15-363 (567)
15 PLN00206 DEAD-box ATP-dependen 100.0 2.7E-40 5.9E-45 425.8 37.3 342 282-833 122-473 (518)
16 PRK14718 ribonuclease III; Pro 100.0 3E-42 6.4E-47 402.8 16.8 223 1592-1931 3-225 (467)
17 PRK11776 ATP-dependent RNA hel 100.0 5.9E-40 1.3E-44 420.4 37.2 331 282-828 5-340 (460)
18 PRK10590 ATP-dependent RNA hel 100.0 8.6E-40 1.9E-44 416.7 35.3 334 283-828 3-343 (456)
19 KOG0328 Predicted ATP-dependen 100.0 1.8E-40 4E-45 357.7 24.0 339 280-832 26-368 (400)
20 KOG0343 RNA Helicase [RNA proc 100.0 2.8E-40 6.1E-45 384.6 27.3 327 292-827 80-412 (758)
21 KOG0335 ATP-dependent RNA heli 100.0 4.4E-40 9.5E-45 391.6 29.1 333 294-833 87-442 (482)
22 PRK11634 ATP-dependent RNA hel 100.0 1.9E-39 4.2E-44 421.1 37.2 333 282-829 7-344 (629)
23 COG0571 Rnc dsRNA-specific rib 100.0 3.6E-41 7.8E-46 376.6 18.1 215 1591-1830 7-232 (235)
24 KOG0701 dsRNA-specific nucleas 100.0 8.8E-42 1.9E-46 453.3 15.0 1068 374-1779 10-1209(1606)
25 KOG0348 ATP-dependent RNA heli 100.0 2.3E-40 5E-45 384.5 24.7 380 283-837 138-556 (708)
26 PRK04537 ATP-dependent RNA hel 100.0 2.1E-39 4.6E-44 419.3 36.2 338 282-829 10-356 (572)
27 PRK12371 ribonuclease III; Rev 100.0 6.4E-41 1.4E-45 381.5 19.0 215 1590-1829 10-231 (235)
28 PRK11192 ATP-dependent RNA hel 100.0 4.1E-39 8.9E-44 410.3 36.1 336 283-828 3-343 (434)
29 PRK01297 ATP-dependent RNA hel 100.0 3.8E-38 8.3E-43 404.5 44.0 338 282-828 88-433 (475)
30 PRK12372 ribonuclease III; Rev 100.0 1.1E-40 2.3E-45 389.8 18.0 210 1592-1829 3-222 (413)
31 PRK13766 Hef nuclease; Provisi 100.0 4.6E-37 1E-41 418.4 53.3 477 300-857 12-500 (773)
32 KOG0336 ATP-dependent RNA heli 100.0 2.5E-39 5.5E-44 363.6 22.9 329 291-830 230-565 (629)
33 KOG0341 DEAD-box protein abstr 100.0 2.8E-39 6E-44 360.8 20.4 369 267-848 156-539 (610)
34 KOG0326 ATP-dependent RNA heli 100.0 1.4E-39 3E-44 356.2 16.1 353 280-855 84-443 (459)
35 KOG0347 RNA helicase [RNA proc 100.0 1.7E-38 3.7E-43 370.1 20.0 362 282-832 182-565 (731)
36 PTZ00424 helicase 45; Provisio 100.0 6.1E-37 1.3E-41 387.8 34.2 339 281-833 28-372 (401)
37 KOG0339 ATP-dependent RNA heli 100.0 6.2E-36 1.3E-40 344.8 28.3 341 282-833 224-574 (731)
38 PRK00102 rnc ribonuclease III; 100.0 5.6E-37 1.2E-41 355.3 18.6 215 1590-1829 3-228 (229)
39 TIGR03817 DECH_helic helicase/ 100.0 3.1E-35 6.8E-40 389.3 35.7 343 292-832 25-381 (742)
40 KOG0350 DEAD-box ATP-dependent 100.0 4.4E-36 9.6E-41 347.5 24.0 362 294-832 150-535 (620)
41 KOG0346 RNA helicase [RNA proc 100.0 1.1E-35 2.3E-40 339.2 23.8 341 281-831 19-404 (569)
42 KOG0332 ATP-dependent RNA heli 100.0 2.2E-35 4.7E-40 330.7 23.3 339 279-833 88-439 (477)
43 TIGR00614 recQ_fam ATP-depende 100.0 3E-34 6.5E-39 366.9 35.0 321 298-835 6-333 (470)
44 TIGR02191 RNaseIII ribonucleas 100.0 8.7E-36 1.9E-40 343.7 16.9 208 1595-1827 1-220 (220)
45 PLN03137 ATP-dependent DNA hel 100.0 8.5E-34 1.8E-38 368.0 33.8 318 298-832 455-784 (1195)
46 KOG4284 DEAD box protein [Tran 100.0 2.8E-34 6.2E-39 338.7 21.7 343 283-832 27-374 (980)
47 KOG0334 RNA helicase [RNA proc 100.0 1.9E-34 4.1E-39 364.5 21.3 342 281-833 365-718 (997)
48 PRK04914 ATP-dependent helicas 100.0 3.2E-33 6.9E-38 369.4 33.6 407 302-829 151-595 (956)
49 PRK11057 ATP-dependent DNA hel 100.0 5.8E-33 1.3E-37 363.6 33.7 317 299-834 21-342 (607)
50 KOG0387 Transcription-coupled 100.0 2E-33 4.4E-38 341.5 23.5 441 299-843 201-666 (923)
51 TIGR00603 rad25 DNA repair hel 100.0 3.9E-32 8.5E-37 347.1 35.2 319 301-826 253-589 (732)
52 PRK13767 ATP-dependent helicas 100.0 1.8E-32 3.9E-37 370.4 32.5 342 296-833 25-396 (876)
53 TIGR01389 recQ ATP-dependent D 100.0 4.2E-32 9E-37 357.3 34.8 316 299-833 9-329 (591)
54 PRK02362 ski2-like helicase; P 100.0 9.7E-32 2.1E-36 361.2 33.1 329 291-827 11-385 (737)
55 PHA02558 uvsW UvsW helicase; P 100.0 4E-31 8.6E-36 339.6 35.9 325 301-827 112-442 (501)
56 KOG0344 ATP-dependent RNA heli 100.0 8.2E-32 1.8E-36 321.5 26.1 328 293-827 148-485 (593)
57 PRK10917 ATP-dependent DNA hel 100.0 5.1E-31 1.1E-35 348.6 34.9 304 297-827 256-579 (681)
58 KOG0337 ATP-dependent RNA heli 100.0 1.2E-32 2.5E-37 313.3 16.4 342 280-835 20-369 (529)
59 TIGR00580 mfd transcription-re 100.0 6.4E-31 1.4E-35 350.0 35.7 297 299-827 448-760 (926)
60 KOG0327 Translation initiation 100.0 5.9E-32 1.3E-36 308.1 21.9 337 281-833 26-366 (397)
61 TIGR00643 recG ATP-dependent D 100.0 8.4E-31 1.8E-35 344.7 34.7 310 294-827 227-556 (630)
62 PLN03142 Probable chromatin-re 100.0 6.7E-30 1.5E-34 338.6 34.2 407 302-827 168-587 (1033)
63 PRK10689 transcription-repair 100.0 7.3E-30 1.6E-34 347.0 35.2 305 294-828 592-910 (1147)
64 PRK00254 ski2-like helicase; P 100.0 1.3E-29 2.9E-34 339.7 32.5 166 292-472 12-181 (720)
65 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-29 2.8E-34 326.7 30.9 158 299-471 12-216 (844)
66 COG1061 SSL2 DNA or RNA helica 100.0 7.9E-29 1.7E-33 311.7 35.2 335 299-823 32-375 (442)
67 KOG0385 Chromatin remodeling c 100.0 1.1E-29 2.3E-34 307.2 25.4 405 302-827 166-587 (971)
68 PRK01172 ski2-like helicase; P 100.0 5.7E-29 1.2E-33 332.6 32.4 166 292-472 12-181 (674)
69 PRK14718 ribonuclease III; Pro 100.0 7.7E-30 1.7E-34 299.0 18.6 130 1372-1560 4-134 (467)
70 PRK05580 primosome assembly pr 100.0 5.2E-29 1.1E-33 327.8 25.9 415 301-875 142-587 (679)
71 PRK09751 putative ATP-dependen 100.0 5.1E-28 1.1E-32 328.9 30.4 145 322-472 1-171 (1490)
72 COG1201 Lhr Lhr-like helicases 100.0 8E-28 1.7E-32 308.4 28.7 328 294-833 14-360 (814)
73 COG0514 RecQ Superfamily II DN 100.0 5.5E-27 1.2E-31 290.7 30.9 321 299-836 13-338 (590)
74 KOG0329 ATP-dependent RNA heli 100.0 3.5E-28 7.5E-33 259.1 15.8 173 290-471 51-228 (387)
75 PRK09401 reverse gyrase; Revie 100.0 2.5E-27 5.5E-32 323.0 27.8 299 302-823 79-430 (1176)
76 TIGR01587 cas3_core CRISPR-ass 100.0 9.3E-27 2E-31 290.0 28.3 98 720-827 221-322 (358)
77 KOG0384 Chromodomain-helicase 99.9 5.2E-28 1.1E-32 306.2 14.6 432 302-846 369-821 (1373)
78 PHA02653 RNA helicase NPH-II; 99.9 1.9E-26 4.1E-31 297.6 28.7 98 721-827 395-505 (675)
79 TIGR00595 priA primosomal prot 99.9 3.6E-27 7.8E-32 299.8 21.8 395 321-875 1-419 (505)
80 TIGR03158 cas3_cyano CRISPR-as 99.9 3.2E-25 6.8E-30 272.9 31.6 153 307-471 1-192 (357)
81 KOG0392 SNF2 family DNA-depend 99.9 6.7E-26 1.5E-30 285.0 25.0 437 302-830 974-1445(1549)
82 TIGR01970 DEAH_box_HrpB ATP-de 99.9 2.3E-25 4.9E-30 294.5 31.4 297 306-827 5-327 (819)
83 KOG0389 SNF2 family DNA-depend 99.9 7.2E-26 1.6E-30 275.6 23.0 444 301-827 397-876 (941)
84 PRK09200 preprotein translocas 99.9 1E-24 2.2E-29 282.1 33.5 120 702-833 410-539 (790)
85 PRK11448 hsdR type I restricti 99.9 6.1E-25 1.3E-29 298.0 32.9 356 302-833 412-813 (1123)
86 PRK14701 reverse gyrase; Provi 99.9 2.2E-25 4.7E-30 309.4 29.0 137 294-440 70-214 (1638)
87 PRK12898 secA preprotein trans 99.9 8.6E-25 1.9E-29 277.1 31.6 115 702-828 455-577 (656)
88 TIGR03714 secA2 accessory Sec 99.9 5.9E-25 1.3E-29 281.2 29.8 119 702-833 406-535 (762)
89 PRK11664 ATP-dependent RNA hel 99.9 9.6E-25 2.1E-29 289.5 31.7 297 306-827 8-330 (812)
90 COG1202 Superfamily II helicas 99.9 4.9E-25 1.1E-29 258.9 25.3 328 293-836 206-554 (830)
91 COG1204 Superfamily II helicas 99.9 4.8E-25 1.1E-29 288.2 26.3 163 295-472 23-192 (766)
92 TIGR01054 rgy reverse gyrase. 99.9 1.2E-24 2.6E-29 297.5 28.5 135 296-440 71-213 (1171)
93 KOG0349 Putative DEAD-box RNA 99.9 1.5E-25 3.2E-30 254.1 14.3 103 719-827 503-605 (725)
94 COG1200 RecG RecG-like helicas 99.9 1.1E-23 2.5E-28 259.3 28.7 158 295-472 254-423 (677)
95 KOG0390 DNA repair protein, SN 99.9 1.7E-23 3.8E-28 264.7 30.6 449 299-840 234-712 (776)
96 TIGR00963 secA preprotein tran 99.9 3.8E-24 8.3E-29 271.8 24.7 121 703-835 388-517 (745)
97 COG1205 Distinct helicase fami 99.9 5.7E-23 1.2E-27 272.8 30.8 347 293-839 60-425 (851)
98 COG1198 PriA Primosomal protei 99.9 5.3E-23 1.1E-27 263.0 23.2 413 301-876 196-642 (730)
99 PF14622 Ribonucleas_3_3: Ribo 99.9 5.2E-25 1.1E-29 229.3 1.9 124 1605-1754 1-124 (128)
100 PF03368 Dicer_dimer: Dicer di 99.9 7.8E-24 1.7E-28 203.9 8.8 85 897-986 1-85 (90)
101 PRK12371 ribonuclease III; Rev 99.9 9.5E-24 2.1E-28 240.9 11.0 133 1372-1562 13-148 (235)
102 KOG0386 Chromatin remodeling c 99.9 2.8E-23 6.1E-28 258.9 16.0 422 300-827 391-826 (1157)
103 COG0571 Rnc dsRNA-specific rib 99.9 1.1E-23 2.3E-28 236.4 10.8 133 1372-1562 9-146 (235)
104 KOG0391 SNF2 family DNA-depend 99.9 9.5E-22 2.1E-26 244.1 27.1 196 301-519 613-814 (1958)
105 COG1197 Mfd Transcription-repa 99.9 2.1E-21 4.5E-26 251.8 31.0 312 294-834 585-911 (1139)
106 KOG0952 DNA/RNA helicase MER3/ 99.9 5.3E-22 1.2E-26 248.6 24.2 165 298-472 105-287 (1230)
107 PRK11131 ATP-dependent RNA hel 99.9 2E-21 4.3E-26 260.3 31.1 100 720-827 285-402 (1294)
108 PRK12372 ribonuclease III; Rev 99.9 2.1E-23 4.5E-28 245.2 10.7 132 1372-1562 4-136 (413)
109 KOG3732 Staufen and related do 99.9 1.7E-22 3.8E-27 228.0 17.1 155 1765-1927 38-210 (339)
110 KOG0352 ATP-dependent DNA heli 99.9 5.8E-22 1.3E-26 225.6 21.1 115 720-843 254-370 (641)
111 PRK09694 helicase Cas3; Provis 99.9 6.5E-21 1.4E-25 251.8 31.4 98 720-826 559-664 (878)
112 KOG0388 SNF2 family DNA-depend 99.9 5.5E-22 1.2E-26 236.6 17.0 481 301-827 565-1142(1185)
113 KOG0351 ATP-dependent DNA heli 99.9 1E-20 2.2E-25 248.5 23.9 315 295-827 256-582 (941)
114 smart00535 RIBOc Ribonuclease 99.9 3.8E-22 8.2E-27 210.0 8.0 126 1607-1758 1-126 (129)
115 KOG1002 Nucleotide excision re 99.9 3E-19 6.5E-24 206.5 31.4 120 699-827 615-737 (791)
116 KOG1000 Chromatin remodeling p 99.9 4.4E-20 9.6E-25 214.3 24.6 385 298-827 193-591 (689)
117 TIGR01967 DEAH_box_HrpA ATP-de 99.9 3.4E-20 7.4E-25 249.8 27.1 100 720-827 278-395 (1283)
118 cd00593 RIBOc RIBOc. Ribonucle 99.9 5.7E-22 1.2E-26 210.1 7.4 127 1608-1759 2-129 (133)
119 COG4098 comFA Superfamily II D 99.8 1.8E-18 3.8E-23 194.0 31.6 296 302-825 96-402 (441)
120 TIGR00348 hsdR type I site-spe 99.8 9.9E-19 2.2E-23 230.8 33.5 153 302-473 237-405 (667)
121 KOG4439 RNA polymerase II tran 99.8 5.4E-19 1.2E-23 213.2 27.2 459 302-827 324-846 (901)
122 COG4096 HsdR Type I site-speci 99.8 5.3E-19 1.1E-23 220.2 25.4 149 299-472 161-322 (875)
123 PRK00102 rnc ribonuclease III; 99.8 1.5E-20 3.3E-25 218.1 10.4 136 1372-1565 6-146 (229)
124 smart00535 RIBOc Ribonuclease 99.8 1.6E-20 3.5E-25 197.6 9.5 117 1386-1561 2-120 (129)
125 PF00636 Ribonuclease_3: Ribon 99.8 8.8E-21 1.9E-25 194.8 6.4 114 1627-1740 1-114 (114)
126 PF14622 Ribonucleas_3_3: Ribo 99.8 6.1E-21 1.3E-25 198.8 5.0 120 1384-1562 2-123 (128)
127 cd00593 RIBOc RIBOc. Ribonucle 99.8 2E-20 4.3E-25 198.3 8.8 120 1386-1563 2-124 (133)
128 KOG0951 RNA helicase BRR2, DEA 99.8 3.2E-19 6.9E-24 225.8 20.4 166 299-472 305-486 (1674)
129 PRK13104 secA preprotein trans 99.8 3.4E-18 7.4E-23 220.5 27.9 114 702-827 426-577 (896)
130 KOG0353 ATP-dependent DNA heli 99.8 2.1E-18 4.5E-23 193.2 21.5 300 300-816 91-403 (695)
131 KOG1123 RNA polymerase II tran 99.8 3.6E-19 7.7E-24 206.4 15.7 322 299-826 298-636 (776)
132 TIGR02191 RNaseIII ribonucleas 99.8 6.3E-20 1.4E-24 211.8 9.6 132 1374-1563 1-138 (220)
133 KOG1817 Ribonuclease [RNA proc 99.8 1.6E-19 3.4E-24 206.4 12.3 131 1590-1743 41-226 (533)
134 cd00268 DEADc DEAD-box helicas 99.8 1.1E-18 2.3E-23 199.6 18.7 172 292-472 10-186 (203)
135 PF00636 Ribonuclease_3: Ribon 99.8 1.8E-20 3.9E-25 192.5 2.3 114 1403-1551 1-114 (114)
136 PF00270 DEAD: DEAD/DEAH box h 99.8 2.2E-18 4.7E-23 190.9 17.7 159 305-471 1-163 (169)
137 PRK12904 preprotein translocas 99.8 3E-17 6.5E-22 212.1 30.4 121 703-835 413-573 (830)
138 PRK12906 secA preprotein trans 99.8 5.2E-18 1.1E-22 218.3 22.8 122 703-836 423-554 (796)
139 COG0553 HepA Superfamily II DN 99.7 6E-16 1.3E-20 216.7 35.8 442 299-831 334-814 (866)
140 TIGR00631 uvrb excinuclease AB 99.7 1.9E-15 4.1E-20 197.1 37.5 121 702-832 424-549 (655)
141 PRK12899 secA preprotein trans 99.7 5.1E-16 1.1E-20 199.8 28.9 131 298-440 84-229 (970)
142 cd02844 PAZ_CAF_like PAZ domai 99.7 1.7E-17 3.6E-22 171.2 9.5 120 1220-1348 16-135 (135)
143 PRK13107 preprotein translocas 99.7 3.6E-16 7.7E-21 201.2 23.1 114 702-827 431-581 (908)
144 COG4581 Superfamily II RNA hel 99.7 9.4E-16 2E-20 200.2 27.1 152 301-472 117-272 (1041)
145 COG4889 Predicted helicase [Ge 99.7 1.8E-17 4E-22 202.2 9.1 173 292-472 150-352 (1518)
146 KOG0950 DNA polymerase theta/e 99.7 1E-15 2.2E-20 192.9 19.4 177 296-500 216-404 (1008)
147 PRK05298 excinuclease ABC subu 99.7 5.6E-14 1.2E-18 185.3 35.4 115 703-827 429-548 (652)
148 KOG0947 Cytoplasmic exosomal R 99.6 1E-14 2.2E-19 181.7 24.4 151 301-472 295-446 (1248)
149 KOG1015 Transcription regulato 99.6 6.8E-15 1.5E-19 181.3 21.5 123 700-828 1122-1266(1567)
150 PF04851 ResIII: Type III rest 99.6 2.1E-15 4.5E-20 169.4 15.8 153 302-471 2-183 (184)
151 PRK14873 primosome assembly pr 99.6 1.6E-15 3.5E-20 196.8 14.7 375 324-875 167-576 (665)
152 COG1203 CRISPR-associated heli 99.6 7.6E-15 1.6E-19 196.2 20.8 95 719-825 438-536 (733)
153 KOG0948 Nuclear exosomal RNA h 99.6 5.4E-15 1.2E-19 179.7 16.3 151 301-472 127-278 (1041)
154 smart00487 DEXDc DEAD-like hel 99.6 1.6E-14 3.4E-19 163.9 17.1 163 298-472 3-172 (201)
155 cd02843 PAZ_dicer_like PAZ dom 99.6 1.7E-15 3.7E-20 149.1 7.2 81 1230-1317 36-120 (122)
156 COG1643 HrpA HrpA-like helicas 99.6 1.8E-13 3.8E-18 178.8 25.7 310 303-831 50-384 (845)
157 KOG0920 ATP-dependent RNA heli 99.6 2.3E-13 5.1E-18 176.4 24.6 153 302-471 172-330 (924)
158 KOG0949 Predicted helicase, DE 99.5 1.1E-12 2.3E-17 164.1 28.6 176 302-498 510-693 (1330)
159 TIGR00596 rad1 DNA repair prot 99.5 1.9E-12 4.1E-17 170.6 32.5 131 401-541 6-141 (814)
160 PF00271 Helicase_C: Helicase 99.5 1.3E-14 2.8E-19 138.3 8.7 73 748-825 6-78 (78)
161 COG0556 UvrB Helicase subunit 99.5 2.1E-12 4.5E-17 153.6 28.1 118 705-832 431-553 (663)
162 TIGR01407 dinG_rel DnaQ family 99.5 1.4E-12 3.1E-17 178.3 28.6 139 295-440 238-454 (850)
163 COG1110 Reverse gyrase [DNA re 99.5 1.2E-12 2.6E-17 166.1 25.3 137 296-441 75-218 (1187)
164 KOG3769 Ribonuclease III domai 99.5 5.5E-14 1.2E-18 155.3 11.4 215 1589-1830 62-304 (333)
165 cd00079 HELICc Helicase superf 99.5 1.2E-13 2.7E-18 145.7 13.5 117 704-830 12-128 (131)
166 PRK12900 secA preprotein trans 99.5 2.4E-13 5.2E-18 175.8 18.6 121 702-834 580-710 (1025)
167 cd00046 DEXDc DEAD-like helica 99.5 3.5E-13 7.7E-18 143.6 15.4 142 318-470 1-144 (144)
168 KOG0922 DEAH-box RNA helicase 99.4 1.3E-11 2.8E-16 152.0 24.5 108 720-832 257-388 (674)
169 PF14709 DND1_DSRM: double str 99.4 1.4E-12 3.1E-17 122.5 8.9 75 1853-1927 2-80 (80)
170 PF00176 SNF2_N: SNF2 family N 99.4 3.4E-12 7.5E-17 155.3 13.7 154 307-472 1-174 (299)
171 smart00490 HELICc helicase sup 99.3 4.6E-12 9.9E-17 121.7 9.0 81 736-825 2-82 (82)
172 KOG1001 Helicase-like transcri 99.3 1.5E-11 3.3E-16 158.8 15.4 122 702-832 520-643 (674)
173 KOG3732 Staufen and related do 99.3 5.3E-12 1.1E-16 143.9 7.6 108 1809-1931 2-109 (339)
174 PRK07246 bifunctional ATP-depe 99.3 1.3E-09 2.8E-14 147.1 31.7 131 301-439 243-449 (820)
175 KOG0923 mRNA splicing factor A 99.3 1.7E-10 3.7E-15 139.8 20.1 156 301-471 263-421 (902)
176 KOG1016 Predicted DNA helicase 99.3 6.2E-10 1.3E-14 135.7 24.3 119 703-827 702-837 (1387)
177 KOG0926 DEAH-box RNA helicase 99.2 2.3E-10 4.9E-15 140.9 20.4 65 763-827 613-695 (1172)
178 PRK12326 preprotein translocas 99.2 2E-09 4.3E-14 136.6 29.0 135 294-441 69-213 (764)
179 KOG0924 mRNA splicing factor A 99.2 4.7E-10 1E-14 136.0 21.8 107 721-832 563-695 (1042)
180 cd00048 DSRM Double-stranded R 99.2 2.8E-11 6E-16 111.9 7.5 68 1853-1926 1-68 (68)
181 PRK08074 bifunctional ATP-depe 99.2 1E-09 2.2E-14 151.0 25.3 137 299-440 253-469 (928)
182 PRK13103 secA preprotein trans 99.2 1.9E-09 4.2E-14 140.1 25.1 127 301-440 80-216 (913)
183 cd02845 PAZ_piwi_like PAZ doma 99.2 4.3E-11 9.4E-16 121.6 7.7 92 1233-1348 26-117 (117)
184 PHA02701 ORF020 dsRNA-binding 99.2 3.8E-11 8.1E-16 126.7 7.4 72 1851-1929 107-178 (183)
185 smart00358 DSRM Double-strande 99.1 7.7E-11 1.7E-15 108.6 7.0 66 1854-1926 1-66 (67)
186 PHA03103 double-strand RNA-bin 99.1 1.7E-10 3.7E-15 123.2 7.5 71 1851-1929 108-178 (183)
187 PF00035 dsrm: Double-stranded 99.0 2.7E-10 5.8E-15 105.0 6.2 66 1854-1926 1-67 (67)
188 PF07652 Flavi_DEAD: Flaviviru 99.0 1.1E-09 2.3E-14 112.6 10.8 132 319-472 6-138 (148)
189 PRK12903 secA preprotein trans 99.0 6.7E-08 1.4E-12 124.5 27.3 112 703-827 409-529 (925)
190 KOG4150 Predicted ATP-dependen 99.0 4.7E-09 1E-13 124.6 13.9 103 720-827 524-630 (1034)
191 PF02170 PAZ: PAZ domain; Int 98.9 5.3E-10 1.1E-14 118.4 3.5 106 1232-1367 26-133 (135)
192 COG1199 DinG Rad3-related DNA 98.9 2.7E-07 5.8E-12 124.6 30.1 70 298-372 10-84 (654)
193 PRK11747 dinG ATP-dependent DN 98.9 8.9E-07 1.9E-11 118.5 34.4 91 706-809 520-616 (697)
194 TIGR03117 cas_csf4 CRISPR-asso 98.9 1.2E-08 2.5E-13 131.6 14.9 129 308-440 2-220 (636)
195 KOG0925 mRNA splicing factor A 98.8 1.4E-07 3.1E-12 111.3 18.5 162 294-471 38-202 (699)
196 TIGR02562 cas3_yersinia CRISPR 98.8 1.2E-06 2.6E-11 115.4 28.7 171 294-471 399-635 (1110)
197 PHA02701 ORF020 dsRNA-binding 98.8 2.2E-08 4.7E-13 106.1 9.2 67 1764-1830 107-178 (183)
198 CHL00122 secA preprotein trans 98.8 8.8E-07 1.9E-11 115.4 25.7 134 295-441 68-211 (870)
199 KOG1042 Germ-line stem cell di 98.7 1.1E-08 2.4E-13 123.8 6.8 100 1232-1356 281-380 (845)
200 smart00489 DEXDc3 DEAD-like he 98.7 9.6E-08 2.1E-12 114.4 13.8 73 302-374 7-84 (289)
201 smart00488 DEXDc2 DEAD-like he 98.7 9.6E-08 2.1E-12 114.4 13.8 73 302-374 7-84 (289)
202 PRK12902 secA preprotein trans 98.7 2.3E-06 5E-11 111.2 26.7 130 299-441 81-220 (939)
203 COG0610 Type I site-specific r 98.7 2.7E-06 5.9E-11 116.6 28.1 140 319-475 275-418 (962)
204 PHA03103 double-strand RNA-bin 98.7 6.4E-08 1.4E-12 103.7 9.4 67 1764-1830 108-178 (183)
205 smart00358 DSRM Double-strande 98.7 7.7E-08 1.7E-12 88.6 8.6 61 1767-1827 1-66 (67)
206 KOG0951 RNA helicase BRR2, DEA 98.7 1.3E-06 2.8E-11 113.6 22.3 144 304-472 1144-1301(1674)
207 KOG0953 Mitochondrial RNA heli 98.6 5E-07 1.1E-11 108.9 16.9 97 720-827 357-464 (700)
208 cd00048 DSRM Double-stranded R 98.6 1.4E-07 3E-12 87.1 8.6 62 1766-1827 1-68 (68)
209 KOG0383 Predicted helicase [Ge 98.6 2.1E-08 4.6E-13 128.0 2.7 81 702-793 613-696 (696)
210 PF00035 dsrm: Double-stranded 98.6 2.9E-07 6.2E-12 84.8 9.1 61 1767-1827 1-67 (67)
211 KOG4334 Uncharacterized conser 98.4 5.4E-07 1.2E-11 105.9 8.9 152 1764-1927 374-557 (650)
212 PF02399 Herpes_ori_bp: Origin 98.4 1.9E-05 4.2E-10 102.0 21.3 131 320-471 52-191 (824)
213 KOG2777 tRNA-specific adenosin 98.3 1.1E-06 2.4E-11 108.3 8.6 120 1791-1928 24-154 (542)
214 PRK15483 type III restriction- 98.3 5.2E-06 1.1E-10 110.2 13.6 141 319-471 61-239 (986)
215 PRK12901 secA preprotein trans 98.2 4.1E-05 8.9E-10 100.8 18.5 112 702-827 610-731 (1112)
216 cd02825 PAZ PAZ domain, named 98.1 3.3E-06 7.2E-11 86.5 6.2 83 1232-1344 30-114 (115)
217 KOG3769 Ribonuclease III domai 97.9 4.7E-05 1E-09 85.8 10.2 172 1374-1613 68-259 (333)
218 PF06862 DUF1253: Protein of u 97.8 0.0076 1.6E-07 75.0 28.9 96 719-823 298-395 (442)
219 TIGR00604 rad3 DNA repair heli 97.8 6.9E-05 1.5E-09 101.5 12.5 72 299-373 6-82 (705)
220 PF13086 AAA_11: AAA domain; P 97.7 9.4E-05 2E-09 86.4 10.0 71 303-373 1-75 (236)
221 PF07517 SecA_DEAD: SecA DEAD- 97.7 0.00029 6.2E-09 82.4 12.1 133 295-440 69-211 (266)
222 PF13872 AAA_34: P-loop contai 97.6 0.00037 8E-09 81.4 12.5 154 302-471 36-221 (303)
223 KOG0298 DEAD box-containing he 97.6 5.4E-05 1.2E-09 100.0 6.3 144 318-472 375-552 (1394)
224 PF14709 DND1_DSRM: double str 97.5 0.00021 4.5E-09 67.7 6.4 64 1765-1828 1-80 (80)
225 KOG1802 RNA helicase nonsense 97.4 0.00041 8.9E-09 85.8 9.6 138 294-441 401-583 (935)
226 cd02846 PAZ_argonaute_like PAZ 97.2 0.00045 9.7E-09 71.0 5.6 65 1234-1302 31-98 (114)
227 KOG2340 Uncharacterized conser 97.2 0.081 1.8E-06 65.0 24.2 124 704-836 534-669 (698)
228 KOG1803 DNA helicase [Replicat 97.1 0.00083 1.8E-08 83.5 7.8 137 302-448 184-380 (649)
229 PF09848 DUF2075: Uncharacteri 97.1 0.0011 2.5E-08 82.3 8.8 95 319-440 3-97 (352)
230 COG0653 SecA Preprotein transl 97.1 0.021 4.5E-07 75.4 20.1 113 702-827 411-535 (822)
231 TIGR00376 DNA helicase, putati 97.1 0.0029 6.2E-08 84.1 12.5 66 302-373 156-223 (637)
232 KOG0952 DNA/RNA helicase MER3/ 97.0 0.00018 3.8E-09 93.6 0.5 126 305-441 929-1061(1230)
233 PF02562 PhoH: PhoH-like prote 97.0 0.0025 5.4E-08 71.7 9.0 58 302-363 3-61 (205)
234 PF12340 DUF3638: Protein of u 97.0 0.0042 9E-08 70.4 10.6 135 300-440 20-186 (229)
235 COG1939 Ribonuclease III famil 96.9 0.0059 1.3E-07 61.1 9.4 47 1628-1675 17-63 (132)
236 PF13604 AAA_30: AAA domain; P 96.9 0.0018 4E-08 73.3 6.9 68 303-380 1-71 (196)
237 PF13307 Helicase_C_2: Helicas 96.8 0.0024 5.1E-08 70.5 7.3 80 721-809 9-92 (167)
238 KOG0921 Dosage compensation co 96.6 0.015 3.2E-07 74.9 13.0 107 721-832 643-770 (1282)
239 COG3587 Restriction endonuclea 96.6 0.0063 1.4E-07 78.4 9.4 48 775-823 479-526 (985)
240 PF13401 AAA_22: AAA domain; P 96.6 0.0047 1E-07 65.0 7.2 118 318-471 5-126 (131)
241 KOG1132 Helicase of the DEAD s 96.6 0.013 2.8E-07 76.0 12.0 38 301-338 19-61 (945)
242 PF13245 AAA_19: Part of AAA d 96.5 0.0077 1.7E-07 56.7 7.2 59 311-371 2-62 (76)
243 COG3421 Uncharacterized protei 96.5 0.0027 5.9E-08 78.2 4.8 112 323-439 3-125 (812)
244 PLN03202 protein argonaute; Pr 96.5 0.0031 6.6E-08 86.8 6.0 90 1232-1348 292-386 (900)
245 PRK10536 hypothetical protein; 96.4 0.043 9.3E-07 63.6 13.5 60 299-362 55-115 (262)
246 TIGR01448 recD_rel helicase, p 95.7 0.074 1.6E-06 72.1 13.5 70 300-377 320-390 (720)
247 PF03368 Dicer_dimer: Dicer di 95.7 0.024 5.2E-07 55.3 6.4 68 1855-1929 2-74 (90)
248 KOG1131 RNA polymerase II tran 95.6 0.045 9.7E-07 66.8 9.6 71 299-371 12-87 (755)
249 PRK06526 transposase; Provisio 95.4 0.039 8.5E-07 65.0 8.0 26 318-343 99-124 (254)
250 PF13871 Helicase_C_4: Helicas 95.4 0.064 1.4E-06 63.0 9.5 72 771-843 52-135 (278)
251 PRK12723 flagellar biosynthesi 95.2 0.16 3.5E-06 63.2 13.2 122 318-471 175-298 (388)
252 TIGR02768 TraA_Ti Ti-type conj 95.2 0.16 3.5E-06 69.1 14.3 101 302-440 351-453 (744)
253 KOG1805 DNA replication helica 95.2 0.062 1.3E-06 70.6 9.6 128 300-440 666-810 (1100)
254 PRK10875 recD exonuclease V su 95.2 0.095 2.1E-06 69.2 11.3 67 304-372 153-220 (615)
255 TIGR01447 recD exodeoxyribonuc 95.1 0.12 2.5E-06 68.2 12.0 67 306-373 148-215 (586)
256 PRK13889 conjugal transfer rel 95.1 0.14 3E-06 70.7 13.0 101 302-440 345-447 (988)
257 COG1875 NYN ribonuclease and A 95.1 0.075 1.6E-06 63.0 9.0 148 299-472 224-389 (436)
258 KOG4334 Uncharacterized conser 95.1 0.017 3.7E-07 69.2 3.8 66 1853-1926 376-441 (650)
259 KOG2777 tRNA-specific adenosin 95.0 0.064 1.4E-06 67.4 8.5 63 1764-1831 89-156 (542)
260 PF00580 UvrD-helicase: UvrD/R 95.0 0.046 1E-06 66.9 7.5 123 304-436 1-125 (315)
261 PRK08084 DNA replication initi 94.9 0.12 2.6E-06 60.5 10.0 25 318-342 46-70 (235)
262 PRK06835 DNA replication prote 94.8 0.12 2.7E-06 63.1 10.1 58 303-367 160-226 (329)
263 PRK04296 thymidine kinase; Pro 94.7 0.04 8.7E-07 62.2 5.5 34 320-359 5-38 (190)
264 PRK12377 putative replication 94.7 0.24 5.2E-06 58.1 11.9 44 318-368 102-145 (248)
265 PRK07952 DNA replication prote 94.4 0.31 6.8E-06 56.9 11.9 47 305-357 78-133 (244)
266 PRK08181 transposase; Validate 94.3 0.38 8.2E-06 57.2 12.5 57 304-367 88-149 (269)
267 COG1484 DnaC DNA replication p 94.3 0.088 1.9E-06 62.1 7.1 65 301-372 81-153 (254)
268 smart00492 HELICc3 helicase su 94.1 0.24 5.3E-06 52.8 9.3 44 766-809 33-79 (141)
269 TIGR00604 rad3 DNA repair heli 94.0 0.34 7.5E-06 66.1 12.9 97 707-809 508-615 (705)
270 cd00009 AAA The AAA+ (ATPases 93.9 0.54 1.2E-05 49.8 12.0 25 318-342 20-44 (151)
271 TIGR03015 pepcterm_ATPase puta 93.9 0.32 7E-06 58.2 11.2 38 302-339 22-65 (269)
272 KOG3792 Transcription factor N 93.9 0.067 1.4E-06 67.6 5.2 149 1764-1926 369-569 (816)
273 PTZ00112 origin recognition co 93.4 0.85 1.8E-05 60.7 14.0 40 304-343 759-807 (1164)
274 smart00491 HELICc2 helicase su 93.4 0.31 6.8E-06 52.1 8.6 42 768-809 32-80 (142)
275 smart00382 AAA ATPases associa 93.3 0.16 3.4E-06 53.4 6.5 39 318-362 3-41 (148)
276 PRK14722 flhF flagellar biosyn 93.3 1.2 2.6E-05 55.3 14.7 119 318-471 138-258 (374)
277 PF00448 SRP54: SRP54-type pro 93.2 0.66 1.4E-05 52.6 11.3 121 320-471 4-126 (196)
278 PRK08727 hypothetical protein; 93.2 0.25 5.5E-06 57.7 8.3 24 319-342 43-66 (233)
279 PRK06893 DNA replication initi 93.1 0.28 6E-06 57.2 8.6 25 319-343 41-65 (229)
280 PRK14974 cell division protein 93.1 0.83 1.8E-05 56.0 12.8 120 320-471 143-265 (336)
281 PRK05642 DNA replication initi 93.0 0.28 6E-06 57.4 8.3 43 425-469 96-138 (234)
282 PRK13826 Dtr system oriT relax 93.0 0.9 2E-05 63.3 14.2 102 301-440 379-482 (1102)
283 PF05970 PIF1: PIF1-like helic 92.7 0.24 5.1E-06 62.1 7.6 107 303-440 1-116 (364)
284 TIGR03420 DnaA_homol_Hda DnaA 92.6 0.56 1.2E-05 54.5 10.2 25 318-342 39-63 (226)
285 KOG0921 Dosage compensation co 92.5 0.2 4.4E-06 65.1 6.5 156 1766-1926 2-238 (1282)
286 PRK11889 flhF flagellar biosyn 92.4 1.2 2.5E-05 55.0 12.4 117 318-470 242-362 (436)
287 PRK05703 flhF flagellar biosyn 92.2 1.5 3.3E-05 55.8 13.9 120 318-471 222-343 (424)
288 TIGR02881 spore_V_K stage V sp 92.1 0.72 1.6E-05 55.0 10.3 24 318-341 43-66 (261)
289 PHA02533 17 large terminase pr 91.4 1.4 2.9E-05 57.7 12.5 147 302-471 58-210 (534)
290 PRK10919 ATP-dependent DNA hel 91.2 0.34 7.4E-06 65.6 7.1 90 303-417 2-91 (672)
291 PRK00149 dnaA chromosomal repl 91.2 0.91 2E-05 58.7 10.7 48 318-370 149-196 (450)
292 TIGR00362 DnaA chromosomal rep 91.1 1.1 2.4E-05 57.2 11.2 37 319-359 138-174 (405)
293 TIGR02928 orc1/cdc6 family rep 91.1 2 4.4E-05 53.9 13.6 39 304-342 19-65 (365)
294 PF00004 AAA: ATPase family as 91.1 0.92 2E-05 47.4 8.8 21 320-340 1-21 (132)
295 KOG0442 Structure-specific end 90.9 43 0.00092 44.9 24.4 150 304-471 14-165 (892)
296 PRK08116 hypothetical protein; 90.8 1.7 3.6E-05 52.0 11.5 41 320-367 117-157 (268)
297 COG1939 Ribonuclease III famil 90.7 0.33 7.1E-06 49.1 4.5 49 1401-1450 14-62 (132)
298 COG3973 Superfamily I DNA and 90.5 0.73 1.6E-05 58.2 8.2 96 294-415 196-298 (747)
299 KOG0298 DEAD box-containing he 90.3 0.42 9.1E-06 64.9 6.3 141 702-855 1201-1345(1394)
300 TIGR02688 conserved hypothetic 90.2 1.1 2.4E-05 55.7 9.3 49 423-471 257-307 (449)
301 TIGR03117 cas_csf4 CRISPR-asso 90.2 1.5 3.3E-05 58.0 11.3 79 720-809 469-561 (636)
302 PRK11054 helD DNA helicase IV; 90.1 0.58 1.3E-05 63.0 7.7 93 296-416 189-281 (684)
303 KOG0989 Replication factor C, 89.8 0.81 1.8E-05 53.6 7.3 37 306-342 39-82 (346)
304 PRK14087 dnaA chromosomal repl 89.7 1.9 4.1E-05 55.4 11.5 50 318-372 142-191 (450)
305 PF05876 Terminase_GpA: Phage 89.3 0.3 6.4E-06 64.3 4.0 155 302-473 15-182 (557)
306 cd01120 RecA-like_NTPases RecA 89.3 2.4 5.1E-05 46.0 10.6 39 320-364 2-40 (165)
307 COG1474 CDC6 Cdc6-related prot 89.3 3.3 7.1E-05 51.6 12.7 42 303-344 20-69 (366)
308 PRK10917 ATP-dependent DNA hel 89.2 1.2 2.6E-05 60.5 9.7 97 701-804 291-389 (681)
309 TIGR01075 uvrD DNA helicase II 89.1 1.2 2.6E-05 61.2 9.7 90 302-417 3-92 (715)
310 TIGR01074 rep ATP-dependent DN 88.9 1.6 3.5E-05 59.6 10.7 89 304-417 2-90 (664)
311 PRK11773 uvrD DNA-dependent he 88.8 1.4 3E-05 60.5 10.1 90 302-417 8-97 (721)
312 PRK06921 hypothetical protein; 88.8 1.4 3E-05 52.6 8.7 43 318-366 118-160 (266)
313 PRK14088 dnaA chromosomal repl 88.7 1.3 2.9E-05 56.8 9.1 37 319-359 132-168 (440)
314 PF14617 CMS1: U3-containing 9 88.7 0.86 1.9E-05 53.1 6.7 89 348-439 123-214 (252)
315 PRK12402 replication factor C 88.7 1.7 3.6E-05 53.9 9.9 38 305-342 20-61 (337)
316 PF01695 IstB_IS21: IstB-like 88.6 0.72 1.6E-05 51.4 5.8 41 318-365 48-88 (178)
317 PRK12422 chromosomal replicati 88.6 1.3 2.9E-05 56.7 8.9 40 319-365 143-182 (445)
318 COG2256 MGS1 ATPase related to 88.5 1.3 2.9E-05 53.9 8.1 22 318-339 49-70 (436)
319 PF05621 TniB: Bacterial TniB 88.3 1.3 2.8E-05 52.7 7.8 97 318-440 62-159 (302)
320 TIGR02880 cbbX_cfxQ probable R 88.3 2.6 5.6E-05 50.8 10.8 25 319-343 60-84 (284)
321 PRK07003 DNA polymerase III su 88.2 1.9 4.1E-05 57.3 9.9 23 320-342 41-63 (830)
322 PRK12727 flagellar biosynthesi 88.1 3.4 7.5E-05 53.0 11.9 118 318-471 351-470 (559)
323 PRK14956 DNA polymerase III su 88.0 1.3 2.8E-05 56.4 8.1 22 320-341 43-64 (484)
324 PRK05707 DNA polymerase III su 87.6 2.1 4.6E-05 52.5 9.5 41 303-343 3-48 (328)
325 PRK00411 cdc6 cell division co 87.4 4 8.7E-05 51.8 12.4 25 318-342 56-80 (394)
326 PRK00771 signal recognition pa 87.4 4.8 0.0001 51.3 12.7 24 319-342 97-120 (437)
327 PRK14086 dnaA chromosomal repl 87.2 1.4 3E-05 57.7 7.9 48 319-371 316-363 (617)
328 PF00308 Bac_DnaA: Bacterial d 87.2 1.6 3.4E-05 50.6 7.7 105 320-471 37-142 (219)
329 PRK08903 DnaA regulatory inact 87.2 2.6 5.7E-05 49.0 9.7 24 318-341 43-66 (227)
330 COG1419 FlhF Flagellar GTP-bin 87.1 7.8 0.00017 48.0 13.7 120 318-471 204-324 (407)
331 cd01122 GP4d_helicase GP4d_hel 87.1 5.1 0.00011 48.0 12.4 116 318-440 31-154 (271)
332 KOG1513 Nuclear helicase MOP-3 86.6 0.54 1.2E-05 60.4 3.5 60 774-833 851-922 (1300)
333 PRK06731 flhF flagellar biosyn 86.5 7.7 0.00017 46.2 13.0 118 318-470 76-196 (270)
334 PRK14964 DNA polymerase III su 86.5 3.3 7.2E-05 53.3 10.6 103 318-451 36-140 (491)
335 PLN03025 replication factor C 86.4 2.8 6.1E-05 51.6 9.8 25 318-342 35-59 (319)
336 PRK14712 conjugal transfer nic 86.3 3.8 8.3E-05 59.3 12.0 61 302-364 834-897 (1623)
337 PF13177 DNA_pol3_delta2: DNA 85.9 5.8 0.00013 43.5 10.9 121 319-471 21-143 (162)
338 PRK08939 primosomal protein Dn 85.7 3.3 7.3E-05 50.3 9.7 26 318-343 157-182 (306)
339 cd00984 DnaB_C DnaB helicase C 85.6 2.4 5.3E-05 49.8 8.4 37 319-360 15-51 (242)
340 PRK13894 conjugal transfer ATP 85.5 1.5 3.2E-05 53.6 6.6 56 304-363 133-190 (319)
341 PRK13833 conjugal transfer pro 85.5 1.5 3.4E-05 53.3 6.7 57 304-364 129-187 (323)
342 PF14954 LIX1: Limb expression 85.3 1.9 4.2E-05 47.3 6.4 70 1851-1924 20-93 (252)
343 PF05496 RuvB_N: Holliday junc 85.3 1.3 2.7E-05 50.5 5.3 22 319-340 52-73 (233)
344 CHL00181 cbbX CbbX; Provisiona 85.2 3.9 8.5E-05 49.3 9.9 24 319-342 61-84 (287)
345 PRK14960 DNA polymerase III su 85.2 2.8 6.1E-05 55.1 9.1 24 319-342 39-62 (702)
346 PHA03333 putative ATPase subun 84.9 12 0.00025 49.4 14.2 72 299-375 165-240 (752)
347 TIGR00643 recG ATP-dependent D 84.5 2.9 6.3E-05 56.4 9.4 97 701-804 265-363 (630)
348 TIGR03499 FlhF flagellar biosy 84.3 4.6 0.0001 48.7 10.0 25 319-343 196-220 (282)
349 PRK12678 transcription termina 84.2 3.9 8.5E-05 52.5 9.4 25 318-342 417-441 (672)
350 PRK12323 DNA polymerase III su 84.2 2.9 6.2E-05 54.9 8.5 23 320-342 41-63 (700)
351 PF03354 Terminase_1: Phage Te 84.2 2.9 6.4E-05 54.4 8.9 68 306-375 1-78 (477)
352 PRK14949 DNA polymerase III su 84.1 2 4.4E-05 58.1 7.4 23 320-342 41-63 (944)
353 TIGR02760 TraI_TIGR conjugativ 83.9 7.1 0.00015 59.0 13.5 113 302-440 428-543 (1960)
354 TIGR00580 mfd transcription-re 83.9 3.7 8.1E-05 57.2 10.0 97 701-804 481-579 (926)
355 PRK07764 DNA polymerase III su 83.7 3.5 7.5E-05 56.7 9.5 23 320-342 40-62 (824)
356 PRK14723 flhF flagellar biosyn 83.7 7 0.00015 52.7 12.0 115 320-470 188-305 (767)
357 COG1435 Tdk Thymidine kinase [ 83.7 3.9 8.4E-05 45.4 8.0 90 320-440 7-96 (201)
358 PRK05580 primosome assembly pr 83.6 4.5 9.6E-05 55.0 10.5 96 701-806 171-266 (679)
359 TIGR01073 pcrA ATP-dependent D 83.6 3.5 7.7E-05 56.7 9.8 90 302-417 3-92 (726)
360 PRK13709 conjugal transfer nic 83.4 4.6 9.9E-05 59.4 10.9 62 302-365 966-1030(1747)
361 PRK14958 DNA polymerase III su 83.2 4 8.7E-05 53.3 9.4 23 320-342 41-63 (509)
362 PRK10416 signal recognition pa 83.0 17 0.00036 44.6 14.1 121 320-470 117-244 (318)
363 PRK06645 DNA polymerase III su 83.0 5.3 0.00012 51.9 10.3 25 318-342 44-68 (507)
364 PRK08691 DNA polymerase III su 82.9 5.4 0.00012 53.1 10.3 24 319-342 40-63 (709)
365 PRK08769 DNA polymerase III su 82.8 5.3 0.00012 48.7 9.7 42 302-343 3-52 (319)
366 PF08423 Rad51: Rad51; InterP 82.8 3.1 6.7E-05 49.3 7.5 100 322-438 43-145 (256)
367 KOG0991 Replication factor C, 82.7 1.3 2.8E-05 49.6 3.9 26 318-343 49-74 (333)
368 TIGR02782 TrbB_P P-type conjug 82.7 2.5 5.4E-05 51.3 6.8 57 304-364 117-175 (299)
369 TIGR02785 addA_Gpos recombinat 82.4 3.1 6.7E-05 60.4 8.8 138 303-453 1-143 (1232)
370 PTZ00293 thymidine kinase; Pro 82.3 3.7 7.9E-05 46.7 7.5 35 320-360 7-41 (211)
371 KOG1513 Nuclear helicase MOP-3 82.3 1.8 3.9E-05 55.9 5.4 152 298-469 259-453 (1300)
372 PRK10867 signal recognition pa 82.3 7.3 0.00016 49.6 10.9 56 320-380 103-160 (433)
373 TIGR00595 priA primosomal prot 82.2 5.1 0.00011 52.4 9.9 94 701-804 6-99 (505)
374 PRK14963 DNA polymerase III su 81.9 7.3 0.00016 50.8 11.0 23 320-342 39-61 (504)
375 PRK07994 DNA polymerase III su 81.6 4.1 9E-05 54.1 8.8 24 320-343 41-64 (647)
376 PRK06904 replicative DNA helic 81.6 10 0.00022 49.1 12.2 114 320-439 224-347 (472)
377 TIGR02760 TraI_TIGR conjugativ 81.5 4.3 9.2E-05 61.2 9.8 58 302-364 1018-1081(1960)
378 PRK13341 recombination factor 81.5 5.2 0.00011 54.3 9.8 22 318-339 53-74 (725)
379 COG2255 RuvB Holliday junction 81.2 4.2 9E-05 47.5 7.4 23 318-340 53-75 (332)
380 COG0513 SrmB Superfamily II DN 81.2 4 8.6E-05 53.6 8.4 100 724-834 102-214 (513)
381 TIGR01425 SRP54_euk signal rec 81.2 13 0.00028 47.1 12.5 56 320-381 103-160 (429)
382 PF06733 DEAD_2: DEAD_2; Inte 81.1 0.86 1.9E-05 50.7 2.0 41 400-440 117-159 (174)
383 PRK08451 DNA polymerase III su 80.9 7.1 0.00015 50.9 10.3 24 320-343 39-62 (535)
384 PRK14948 DNA polymerase III su 80.9 6.8 0.00015 52.4 10.5 26 318-343 39-64 (620)
385 PRK09112 DNA polymerase III su 80.9 3.7 8.1E-05 50.9 7.6 25 319-343 47-71 (351)
386 PRK12724 flagellar biosynthesi 80.7 17 0.00037 45.8 13.0 117 320-471 226-345 (432)
387 PRK14961 DNA polymerase III su 80.3 6.4 0.00014 49.4 9.5 23 320-342 41-63 (363)
388 PRK06964 DNA polymerase III su 80.1 6 0.00013 48.8 8.9 40 304-343 2-47 (342)
389 PRK14951 DNA polymerase III su 80.0 5.5 0.00012 52.9 9.0 23 320-342 41-63 (618)
390 PRK13342 recombination factor 79.9 7.8 0.00017 49.5 10.3 22 318-339 37-58 (413)
391 PRK04195 replication factor C 79.9 5.2 0.00011 52.3 8.9 23 318-340 40-62 (482)
392 PRK05563 DNA polymerase III su 79.9 8.5 0.00018 51.0 10.8 23 320-342 41-63 (559)
393 TIGR00064 ftsY signal recognit 79.7 22 0.00047 42.6 13.3 120 320-469 75-201 (272)
394 PRK11331 5-methylcytosine-spec 79.5 4.7 0.0001 50.9 7.8 37 304-340 180-217 (459)
395 TIGR01547 phage_term_2 phage t 79.3 7.8 0.00017 49.3 10.0 133 320-472 4-142 (396)
396 TIGR03600 phage_DnaB phage rep 79.2 5.8 0.00013 50.9 8.9 115 319-439 196-318 (421)
397 COG1200 RecG RecG-like helicas 78.9 6.3 0.00014 51.5 8.8 95 703-804 294-390 (677)
398 COG1702 PhoH Phosphate starvat 78.8 1.4 3E-05 52.9 2.7 143 301-472 126-281 (348)
399 CHL00095 clpC Clp protease ATP 78.8 6.5 0.00014 54.8 9.7 38 305-342 184-225 (821)
400 TIGR02639 ClpA ATP-dependent C 78.7 7.3 0.00016 53.6 10.1 26 318-343 204-229 (731)
401 PF05707 Zot: Zonular occluden 78.6 5.6 0.00012 45.0 7.6 45 426-472 79-128 (193)
402 PF13173 AAA_14: AAA domain 78.6 11 0.00023 39.6 9.2 38 426-470 61-98 (128)
403 KOG0344 ATP-dependent RNA heli 78.6 7.5 0.00016 49.6 9.0 102 324-436 364-466 (593)
404 KOG0347 RNA helicase [RNA proc 78.4 3.5 7.6E-05 51.6 6.0 57 723-788 265-321 (731)
405 PRK10689 transcription-repair 78.3 7.3 0.00016 55.7 10.1 98 701-804 630-728 (1147)
406 PRK14952 DNA polymerase III su 78.3 8.3 0.00018 51.0 9.9 23 320-342 38-60 (584)
407 PRK12726 flagellar biosynthesi 78.3 16 0.00036 45.2 11.6 103 318-453 207-312 (407)
408 PRK14955 DNA polymerase III su 78.2 7.3 0.00016 49.5 9.2 23 320-342 41-63 (397)
409 PRK14721 flhF flagellar biosyn 78.1 19 0.0004 45.7 12.5 120 318-471 192-312 (420)
410 PRK14962 DNA polymerase III su 78.1 5.9 0.00013 51.2 8.3 22 320-341 39-60 (472)
411 PRK14959 DNA polymerase III su 77.7 5.4 0.00012 52.7 7.9 24 319-342 40-63 (624)
412 COG1219 ClpX ATP-dependent pro 77.4 1.9 4.1E-05 50.8 3.1 23 318-340 98-120 (408)
413 TIGR00959 ffh signal recogniti 77.4 25 0.00054 44.9 13.4 57 320-381 102-160 (428)
414 KOG1807 Helicases [Replication 77.3 4.2 9.2E-05 52.8 6.4 73 301-373 376-449 (1025)
415 PRK00440 rfc replication facto 77.3 19 0.00041 44.1 12.4 24 318-341 39-62 (319)
416 KOG2334 tRNA-dihydrouridine sy 77.1 1.3 2.8E-05 53.6 1.9 71 1848-1927 371-441 (477)
417 PRK14969 DNA polymerase III su 77.0 8.9 0.00019 50.4 9.7 23 320-342 41-63 (527)
418 PRK07004 replicative DNA helic 76.6 11 0.00025 48.6 10.4 115 319-439 215-337 (460)
419 PRK11034 clpA ATP-dependent Cl 76.2 6.3 0.00014 53.8 8.1 25 318-342 208-232 (758)
420 PLN03187 meiotic recombination 76.1 4.9 0.00011 49.6 6.5 43 320-362 129-171 (344)
421 PRK08506 replicative DNA helic 76.0 13 0.00028 48.4 10.6 114 319-439 194-315 (472)
422 PHA03368 DNA packaging termina 75.9 24 0.00051 46.5 12.5 129 316-469 253-389 (738)
423 PRK06871 DNA polymerase III su 75.7 13 0.00029 45.4 10.1 40 304-343 3-50 (325)
424 PRK07471 DNA polymerase III su 75.7 9 0.0002 47.9 8.8 25 319-343 43-67 (365)
425 TIGR03346 chaperone_ClpB ATP-d 75.7 10 0.00022 53.2 10.2 25 318-342 195-219 (852)
426 PRK06995 flhF flagellar biosyn 75.6 16 0.00034 47.1 11.0 23 320-342 259-281 (484)
427 PRK07940 DNA polymerase III su 75.4 11 0.00023 47.7 9.4 24 319-342 38-61 (394)
428 TIGR03689 pup_AAA proteasome A 75.3 10 0.00022 49.2 9.3 24 318-341 217-240 (512)
429 KOG0331 ATP-dependent RNA heli 75.3 18 0.00039 46.5 11.3 106 718-835 162-281 (519)
430 cd01124 KaiC KaiC is a circadi 75.1 5.6 0.00012 44.5 6.3 47 320-373 2-48 (187)
431 TIGR02012 tigrfam_recA protein 75.0 4.5 9.7E-05 49.3 5.7 42 319-366 57-98 (321)
432 PRK00080 ruvB Holliday junctio 74.9 5.8 0.00013 49.0 6.9 23 318-340 52-74 (328)
433 cd01393 recA_like RecA is a b 74.9 6.1 0.00013 45.9 6.7 43 320-362 22-64 (226)
434 COG1110 Reverse gyrase [DNA re 74.6 5.9 0.00013 53.5 6.9 66 719-789 123-190 (1187)
435 PRK07133 DNA polymerase III su 74.3 8.3 0.00018 51.8 8.3 23 320-342 43-65 (725)
436 PF14954 LIX1: Limb expression 74.2 9.2 0.0002 42.3 7.1 79 895-981 21-100 (252)
437 PRK06090 DNA polymerase III su 74.1 12 0.00026 45.8 9.0 42 302-343 2-51 (319)
438 COG0593 DnaA ATPase involved i 74.0 8.9 0.00019 48.0 8.0 38 318-359 114-151 (408)
439 PRK14957 DNA polymerase III su 73.2 17 0.00036 47.8 10.6 23 320-342 41-63 (546)
440 COG4626 Phage terminase-like p 73.1 42 0.0009 43.4 13.6 171 301-495 59-245 (546)
441 PRK09111 DNA polymerase III su 72.8 7.2 0.00016 51.8 7.3 25 319-343 48-72 (598)
442 PF03796 DnaB_C: DnaB-like hel 72.8 9.4 0.0002 45.4 7.7 115 320-440 22-144 (259)
443 PRK09183 transposase/IS protei 72.6 14 0.00029 44.1 8.9 42 318-366 103-144 (259)
444 PRK14950 DNA polymerase III su 72.4 14 0.0003 49.5 9.9 23 320-342 41-63 (585)
445 PHA02544 44 clamp loader, smal 72.2 25 0.00054 43.1 11.6 21 319-339 44-65 (316)
446 PRK08006 replicative DNA helic 72.1 14 0.0003 47.9 9.5 114 320-439 227-349 (471)
447 PRK10865 protein disaggregatio 72.0 12 0.00025 52.4 9.4 25 318-342 200-224 (857)
448 PRK05748 replicative DNA helic 71.9 23 0.00051 45.8 11.6 115 319-439 205-327 (448)
449 PRK06647 DNA polymerase III su 71.3 15 0.00032 48.7 9.6 23 320-342 41-63 (563)
450 PRK14873 primosome assembly pr 71.2 16 0.00034 49.3 10.0 97 702-807 170-266 (665)
451 TIGR02237 recomb_radB DNA repa 71.2 18 0.00038 41.4 9.3 35 320-360 15-49 (209)
452 PHA00729 NTP-binding motif con 70.9 16 0.00036 42.0 8.7 25 318-342 18-42 (226)
453 TIGR00665 DnaB replicative DNA 70.8 14 0.0003 47.7 9.2 114 319-439 197-318 (434)
454 PRK04301 radA DNA repair and r 70.6 10 0.00022 46.6 7.6 42 320-361 105-146 (317)
455 PRK14954 DNA polymerase III su 70.5 15 0.00032 49.1 9.4 23 320-342 41-63 (620)
456 cd03115 SRP The signal recogni 70.4 28 0.00061 38.4 10.4 24 320-343 3-26 (173)
457 cd00983 recA RecA is a bacter 70.3 5.2 0.00011 48.8 4.8 41 320-366 58-98 (325)
458 cd01123 Rad51_DMC1_radA Rad51_ 70.1 13 0.00028 43.4 8.0 41 320-360 22-62 (235)
459 PF01637 Arch_ATPase: Archaeal 70.0 7.2 0.00016 45.1 5.9 58 408-470 104-165 (234)
460 PRK14965 DNA polymerase III su 70.0 12 0.00027 49.8 8.6 23 320-342 41-63 (576)
461 PRK09354 recA recombinase A; P 69.8 7.1 0.00015 48.0 5.8 40 320-365 63-102 (349)
462 COG0552 FtsY Signal recognitio 69.6 1.2E+02 0.0027 36.8 15.6 124 320-472 142-271 (340)
463 PRK08760 replicative DNA helic 69.5 24 0.00052 45.9 10.8 113 320-439 232-352 (476)
464 TIGR00635 ruvB Holliday juncti 69.4 8.1 0.00018 47.2 6.4 22 318-339 31-52 (305)
465 TIGR02238 recomb_DMC1 meiotic 69.3 8.1 0.00018 47.2 6.2 44 320-363 99-142 (313)
466 PRK08840 replicative DNA helic 68.8 33 0.00071 44.4 11.8 115 319-439 219-342 (464)
467 PRK13851 type IV secretion sys 68.6 5.9 0.00013 48.9 4.8 50 308-364 151-202 (344)
468 cd01121 Sms Sms (bacterial rad 68.5 14 0.0003 46.3 8.1 46 320-372 85-130 (372)
469 PRK05896 DNA polymerase III su 68.5 23 0.00049 46.8 10.2 24 319-342 40-63 (605)
470 cd01129 PulE-GspE PulE/GspE Th 68.4 7.2 0.00016 46.5 5.4 54 304-363 64-120 (264)
471 TIGR03345 VI_ClpV1 type VI sec 68.3 28 0.0006 48.7 11.7 25 318-342 209-233 (852)
472 PF02456 Adeno_IVa2: Adenoviru 68.2 4.8 0.0001 47.4 3.6 42 320-365 90-131 (369)
473 KOG2028 ATPase related to the 68.0 14 0.00031 44.3 7.4 30 310-339 151-184 (554)
474 COG4962 CpaF Flp pilus assembl 67.7 8.8 0.00019 46.4 5.8 61 299-366 153-215 (355)
475 PRK07993 DNA polymerase III su 67.7 18 0.00039 44.6 8.8 41 303-343 2-50 (334)
476 PRK09361 radB DNA repair and r 67.3 15 0.00033 42.6 7.8 35 320-360 26-60 (225)
477 PLN03186 DNA repair protein RA 67.3 12 0.00027 46.1 7.2 43 320-362 126-168 (342)
478 TIGR00678 holB DNA polymerase 67.0 42 0.00091 37.7 11.1 26 318-343 15-40 (188)
479 COG1197 Mfd Transcription-repa 66.8 15 0.00033 51.1 8.4 88 719-819 641-729 (1139)
480 COG0470 HolB ATPase involved i 66.8 23 0.00049 43.5 9.7 24 320-343 27-50 (325)
481 PRK11823 DNA repair protein Ra 66.8 22 0.00049 45.8 9.7 48 319-373 82-129 (446)
482 COG2874 FlaH Predicted ATPases 66.6 81 0.0018 35.9 12.4 131 320-472 31-169 (235)
483 PF05729 NACHT: NACHT domain 66.2 19 0.00041 39.0 7.9 45 320-365 3-47 (166)
484 PRK04537 ATP-dependent RNA hel 66.2 22 0.00047 47.6 9.7 76 350-434 256-333 (572)
485 TIGR03881 KaiC_arch_4 KaiC dom 66.1 55 0.0012 38.0 12.2 47 318-371 21-67 (229)
486 PHA00012 I assembly protein 66.0 21 0.00045 43.0 8.3 24 320-343 4-27 (361)
487 PRK05973 replicative DNA helic 65.8 8.5 0.00019 44.8 5.1 49 318-373 65-113 (237)
488 PHA00350 putative assembly pro 65.7 28 0.00061 43.7 9.8 24 320-343 4-28 (399)
489 TIGR02640 gas_vesic_GvpN gas v 65.6 7.7 0.00017 46.2 4.9 36 304-339 3-43 (262)
490 PF05127 Helicase_RecD: Helica 65.5 3.6 7.9E-05 45.5 2.0 99 321-438 1-102 (177)
491 COG1221 PspF Transcriptional r 65.3 12 0.00027 46.6 6.7 95 309-440 88-187 (403)
492 PRK09165 replicative DNA helic 65.2 40 0.00088 44.1 11.7 118 320-439 220-354 (497)
493 cd01131 PilT Pilus retraction 64.9 7.3 0.00016 44.3 4.4 40 320-364 4-43 (198)
494 KOG1806 DEAD box containing he 64.5 9.4 0.0002 51.4 5.6 73 297-373 732-805 (1320)
495 PRK06305 DNA polymerase III su 64.4 26 0.00055 45.3 9.6 25 319-343 41-65 (451)
496 cd00268 DEADc DEAD-box helicas 64.4 31 0.00068 39.1 9.5 79 701-788 45-127 (203)
497 PF12846 AAA_10: AAA-like doma 63.8 8.8 0.00019 46.5 5.2 40 318-363 2-41 (304)
498 PRK05636 replicative DNA helic 63.6 43 0.00092 43.8 11.4 113 320-439 268-388 (505)
499 TIGR02397 dnaX_nterm DNA polym 63.2 29 0.00063 43.3 9.8 24 319-342 38-61 (355)
500 PRK13900 type IV secretion sys 63.0 11 0.00024 46.4 5.7 50 308-364 149-200 (332)
No 1
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=100.00 E-value=7.4e-70 Score=719.33 Aligned_cols=1513 Identities=24% Similarity=0.238 Sum_probs=978.8
Q ss_pred Ccchhhhhccccccc---cccccCcccc--ccccCCCCCcCCcccccccchhHHHhhccCCCCCCCCCCcccCCCCCCCC
Q 000174 18 QSSYWLDACEDILID---EFVNFDTSVV--QDSVDNTSNQDSLSNDFFGGIDHILDSIKNGSGLPNSNGNLLKNGSEDST 92 (1931)
Q Consensus 18 ~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (1931)
.+++||++|++.+|+ ++..|+..-. +.+.+..+ ++||+|||+++|.|.+.+|.+++.+... +.
T Consensus 11 ~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 78 (1606)
T KOG0701|consen 11 TPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIG----ALNLLFGGYLLLSDRVLLVFDECHNLVM--------DA 78 (1606)
T ss_pred cccccccccccccccccchhhhhhhhhhcccchhhhhh----hhhhhcCchhhhhhhhhhcccccccccc--------cc
Confidence 789999999999999 5544554444 22334444 5799999999999999999999998776 21
Q ss_pred CC---CCcccccchhhccCCCCCCcccccccccccccCCcccccCCCCCccccccccccCccccCCCCccccccccCcch
Q 000174 93 GG---ENHQAEGLILLSNNGSDKDGVDRKRKLENCENVNGYLVNGKAGGRLSDHFTKENGVHRDNGNNDHEASRIRDFDS 169 (1931)
Q Consensus 93 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1931)
.. ...+.+.... .++-|..+.++=+-++++ ....
T Consensus 79 ~~~~~~~~~~~~~~~--------~s~pr~~~~~a~~~~~~~-----------------------------------~~~~ 115 (1606)
T KOG0701|consen 79 HPRRHFMDLSSSGPS--------FSVPRILGLTASLLNDKF-----------------------------------WLEE 115 (1606)
T ss_pred CcchhhhhcccccCC--------CCcchhhhccCCCcCCCc-----------------------------------chhh
Confidence 11 1111111110 122233333333312221 2223
Q ss_pred hhhHhhhhccccccccCccCC-CCCcc-CCCccccccccccCCchhhcccCCCCccccCCCCCCCcccccccccCCCCCC
Q 000174 170 EDRFSKRARVSVCKNESQYSS-RGQYC-SSDKDRVFGRKRLRDLDDIGRRDRDPMRRREHYNGSSRKDVRDKDFRDREPR 247 (1931)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~r~r~~~~~~~~~~~~~r~~~~~g~~~r~~~~~~~~~~~~~r 247 (1931)
...+.+..+..+..+.+...+ ++... .+.+.+--.......|+..+-. -. ..-.- --.++..-.+.+
T Consensus 116 ~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~~~~~~~~~-~~-~~~~~---------~~~~~~~~~~~~ 184 (1606)
T KOG0701|consen 116 LDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDAEYGPLLIN-KD-KLICV---------FLIPDCIVITFQ 184 (1606)
T ss_pred hhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhhhhhhhhcc-cc-ceeEE---------eccCcceeeecc
Confidence 333444444444444333322 22111 1122222233444444432220 00 00000 011234444555
Q ss_pred CccccccCCCCccccccCCccccccccCCCCCCCCccccCCCCcchhhhhcCC--CCCCcHHHHHHHH-----HHhccCE
Q 000174 248 GYWERDRLGSNGMVFRLGSWEADHNRAGKEANGINQECNGKVGKKSEAKEKMP--EEQARPYQLDVLE-----QAKKKNT 320 (1931)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~Q~eai~-----~~l~~n~ 320 (1931)
.+|..+....+........|.....++..........+...... .+.+.. +..-.+.+.+.+. .+..-++
T Consensus 185 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 261 (1606)
T KOG0701|consen 185 KQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNPAELHYCEE---VFSDSELRFLMSIPRLLERLRDSKHEYIHQFEV 261 (1606)
T ss_pred ccchhhhhhcccCcchhhHHHHHHHhhcceeecCCHHHhhhhhh---hcCcHHHHHHHhHHHHHHHhhhcchhhhcccce
Confidence 66666655555555555555554333332221111111111111 100000 0011112222222 2223678
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc
Q 000174 321 IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400 (1931)
Q Consensus 321 Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~ 400 (1931)
+....++-+++++.......+..........--.+|.++.+..+.+..+.++..+...+..++|.+....|+...|...+
T Consensus 262 ~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~ 341 (1606)
T KOG0701|consen 262 LRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELEL 341 (1606)
T ss_pred eeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHh
Confidence 88889999999888654433333222233345589999999999999999999888888889999999999999999999
Q ss_pred CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchh
Q 000174 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQV 480 (1931)
Q Consensus 401 ~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~ 480 (1931)
....|+..++.-.++.|.+..+.+..++....+++++....+.|...+..+.+..+.....-+++.|..++..++.....
T Consensus 342 ~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~~s~~~ 421 (1606)
T KOG0701|consen 342 RQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKNPSYAY 421 (1606)
T ss_pred hhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcChhHhH
Confidence 99999999999999999988888999999999999999998899999999998876666677889988877655433344
Q ss_pred HHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 000174 481 DCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARD 560 (1931)
Q Consensus 481 ~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~ 560 (1931)
........|....++.+..+..+.++..+++.+...++.++.+..+..+...++.......+....+.++..++++...+
T Consensus 422 ~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~ 501 (1606)
T KOG0701|consen 422 TEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKIGELDDCLHPKGKEPKACLEEVD 501 (1606)
T ss_pred HhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHhhhhhhhhcccccchHHhhhhhc
Confidence 44445566666777777777778888888999999999888887777777666666666666667777888888888888
Q ss_pred chhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000174 561 AGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSL 640 (1931)
Q Consensus 561 ~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~ 640 (1931)
....++....+.............+....+.+..+....++||....+...+......+. +.+....+...|+......
T Consensus 502 ~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~-n~~~r~~~~~~~~~~~~~~ 580 (1606)
T KOG0701|consen 502 TEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER-NFERRKLYPPEDLTYCFGI 580 (1606)
T ss_pred cccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc-ccccccccCchhhhhhhcc
Confidence 888777777776666666666666777777888888899999997777655555444433 2222222222333333333
Q ss_pred hhhhhhhccccccccccccccc-ccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCC
Q 000174 641 LQCELVEGAVSKKDAKVVDSEN-GFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHT 719 (1931)
Q Consensus 641 l~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~ 719 (1931)
+.+...............+... .........+......+......+..+++++..........++...|+..|.-+...
T Consensus 581 l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~l~~~llp~~~~ 660 (1606)
T KOG0701|consen 581 LTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLAKINLEFDPKTAELIETLLPLNVL 660 (1606)
T ss_pred cchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhhccccccCCchhhHHHHhcccccc
Confidence 3222222111111100000000 000000000111111122223334455566655566677888999999999877667
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
.+.++++|+..--++-++...+-.++....++...+.+.....++....|......|+.+++..+++|+....|+|+.-|
T Consensus 661 ~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~ 740 (1606)
T KOG0701|consen 661 ADKRAIIIVRKFLEAIVAPSDLMPIPSKDEVRKAKYFDGEDSQDAVGMYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETF 740 (1606)
T ss_pred cccchhhhHHHHHHHHhCcccccCCCChhhhhhhhhcccccchhhhhhhhcccccceeeeeeeeeccchhcCCCcchhee
Confidence 78899999988777766666555555445566555555555556666688889999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCC
Q 000174 800 NVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVP 879 (1931)
Q Consensus 800 ~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~~~~~ 879 (1931)
+.|+++|.-.+...++|.+||++-.++.+.++++.++......+.......+.++++.+++..+.+..+.......+..|
T Consensus 741 ~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~~h~~~~s~~~~~~~~p 820 (1606)
T KOG0701|consen 741 NEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLIIHPALASLWRRAVCLP 820 (1606)
T ss_pred eeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCCCCcCcchhhhhhccCc
Confidence 99999999999999999999999999999999999887777777666667778888888877776665555444455678
Q ss_pred CccceeCCCCcEEcccchHHHHHHHhhcCCCCCCCccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHH
Q 000174 880 GTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRL 959 (1931)
Q Consensus 880 ~~~y~v~~tgA~lt~~~Ai~ll~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~ 959 (1931)
..+|.++.||+.++...|+.+|.+||+.++++.|...++ ..+.+...|.|.+.+|..+|++.+.|....+.+.
T Consensus 821 ~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 893 (1606)
T KOG0701|consen 821 EILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEAS-------KSDKNKDEYSCDLALPKENPVKQVLGKANQLDKV 893 (1606)
T ss_pred chheeeccccceeeeecccchhhhhhhhccchhhccccc-------cCCCCccccceeecccCCCchhhhhchhhhhhHH
Confidence 888999999999999999999999998766665544433 3344567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccccccCCcCCCCCCCCccccccccccccccccccccccCCCCCCCCcc
Q 000174 960 AQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQQEKVDQNDEGEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKL 1039 (1931)
Q Consensus 960 Akr~AAf~Ac~~L~~~G~ldd~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 1039 (1931)
++++++|++|+.||++|.++|++.|...+................| +.+
T Consensus 894 ~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~~~~~~~i~~a~~p------~~~------------------------- 942 (1606)
T KOG0701|consen 894 NQQAVELQECIQLHEVGALDDHLVFNKGVADQVLAKRESISLATRP------ELV------------------------- 942 (1606)
T ss_pred HhhhhhhhhhhhhhcccccccccccCccccchhhhhccccccccCc------ccc-------------------------
Confidence 9999999999999999999999999775542211100000000000 000
Q ss_pred eeEEEEEeeecCCCCCCCCccccccceeEeecccchHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCceEEEEecccCC
Q 000174 1040 FHLFMYTVKCVNNGISKDPFLTQVSDFAVLFSSELDAELASLKNFHVRLMSIVLDVDVEPYTTPWDPAKAYLFVPVVSDK 1119 (1931)
Q Consensus 1040 ~~~y~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~l~~f~~~~~~~v~~~~~~~~~~~~~~~~~yl~~P~~~~~ 1119 (1931)
+++.+..+.+. | +++.-+. +..... .+..+ +.|
T Consensus 943 -----------------~~~~~~~~~~s-----------------~--~~~n~l~----~~~~~~-~~~~s-~~~----- 975 (1606)
T KOG0701|consen 943 -----------------SPFIPEPPTTS-----------------H--LISNRLS----PSSPSN-SDLNS-LLP----- 975 (1606)
T ss_pred -----------------cccccCCchhh-----------------h--hhhhhcC----ccCCCC-CCccc-ccc-----
Confidence 00000000000 0 1111110 100000 00000 000
Q ss_pred CCCCCCccchhhHhhhhccCCCCCccccCCCCcccCccccccCCCcccccccccccccccCccCCCCcccccccchhhhh
Q 000174 1120 SVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDVV 1199 (1931)
Q Consensus 1120 ~~~~~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1931)
...+||+.++.+
T Consensus 976 ----~~~~~~E~~e~i---------------------------------------------------------------- 987 (1606)
T KOG0701|consen 976 ----NKRSDWEAVEKI---------------------------------------------------------------- 987 (1606)
T ss_pred ----cccccccccccc----------------------------------------------------------------
Confidence 011222211100
Q ss_pred hccCCCCchhhhhhcccCCCccccccccccCCccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccH
Q 000174 1200 KASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSY 1279 (1931)
Q Consensus 1200 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~ 1279 (1931)
.++.
T Consensus 988 ----------------------------------------------------------~n~~------------------ 991 (1606)
T KOG0701|consen 988 ----------------------------------------------------------LNFR------------------ 991 (1606)
T ss_pred ----------------------------------------------------------cccc------------------
Confidence 0000
Q ss_pred HHHHHhhcCccccCCCCceEEeeccccccccCCCccccccccccccccccccceEEEcCCcccccccCChHHHHHhhchh
Q 000174 1280 ADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLP 1359 (1931)
Q Consensus 1280 ~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~~~~lP 1359 (1931)
|.+. .+ ...+.+.
T Consensus 992 -------~~Fs--------------------------~~-------------~~~i~~~--------------------- 1004 (1606)
T KOG0701|consen 992 -------YVFS--------------------------IS-------------LASIALS--------------------- 1004 (1606)
T ss_pred -------eecc--------------------------cc-------------ccccccc---------------------
Confidence 0000 00 0001110
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCCChhHHHHHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhh
Q 000174 1360 SIMRRVESMLLAIQLKDKINYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1439 (1931)
Q Consensus 1360 si~~rl~~~l~a~~l~~~l~~~~~~~~ll~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~ 1439 (1931)
..+||||||+++|.+.++|||||+||||+||++++.+||.+||..+||+|+.+|+.
T Consensus 1005 ------------------------~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~ 1060 (1606)
T KOG0701|consen 1005 ------------------------TSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDV 1060 (1606)
T ss_pred ------------------------hhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHh
Confidence 57789999999999999999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCcccccc-chhhhcccCCCcCCCCcCccccccC
Q 000174 1440 MVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQE-KSVAEDKLGTDKNYNEYEDDDMEDG 1518 (1931)
Q Consensus 1440 lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 1518 (1931)
+++|.+|+++|+..||++|++.+.|.|+.|..|+....+..++++...+++... .+..+ ...+.+....++++
T Consensus 1061 ~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e------~~~df~e~~~~~~~ 1134 (1606)
T KOG0701|consen 1061 NVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDE------KIKDFQEAMEKEDG 1134 (1606)
T ss_pred cccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhh------hhhHHHHhhhccCC
Confidence 999999999999999999999999999765555556666666655433322211 01000 01111122222223
Q ss_pred cccCCCCCccccccchhhhHHHHHhhheeeccCHHHHH-----HHHhHhhccccCCCCcCCCCCCCCCCCccccchhhHH
Q 000174 1519 ELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAAN-----HLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFH 1593 (1931)
Q Consensus 1519 ~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~-----~~~~~l~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 1593 (1931)
........+.+...|++||++||||||+|+|+|...+. ++|+|.++...++......................+.
T Consensus 1135 ~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~ 1214 (1606)
T KOG0701|consen 1135 DSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLD 1214 (1606)
T ss_pred cccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHH
Confidence 22222224678899999999999999999999998887 9999999998776554332222212222222345678
Q ss_pred HHHHHcCC--CcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhC--hHH
Q 000174 1594 ALEDALKI--KFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVN--NEN 1669 (1931)
Q Consensus 1594 ~le~~lgy--~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~--n~~ 1669 (1931)
.+|..++| +|....|+.+|++|+|+...+..++|||+|+||++||++++++.|+.+....++.+++++++-+| |..
T Consensus 1215 ~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~ 1294 (1606)
T KOG0701|consen 1215 RLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNEN 1294 (1606)
T ss_pred HHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhc
Confidence 99999999 99999999999999999988888999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEee
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~ 1749 (1931)
++..++..-|+.+++..+......|..+++.+.......+.........+.|+.+.|+.|+++++.++|.......+|++
T Consensus 1295 ~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~ 1374 (1606)
T KOG0701|consen 1295 DLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKF 1374 (1606)
T ss_pred ccccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhh
Confidence 99999999999999999998889999999998877766665555555568899999999999999999999888778888
Q ss_pred ecc-----CCCCCCCCCCCCCCChHHHHHHHHhhcCCceeEEecc--CCeEEEEEEECCEEEEEeecCCHHHHHHHHHHH
Q 000174 1750 FQP-----LLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRS--GNLATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822 (1931)
Q Consensus 1750 ~~~-----~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~y~~~~~--g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~ 1822 (1931)
..+ +.++.+.......+|.....+.|.++...+.+.+..- ...-+..+..++..+.+-.+..+..+... |..
T Consensus 1375 e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~-a~~ 1453 (1606)
T KOG0701|consen 1375 EEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF-ASL 1453 (1606)
T ss_pred hcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhccccc-hhh
Confidence 877 6677777766677888888888887654332222211 00011111111111111111111111111 222
Q ss_pred HHHHHHhhhhhhhhcc-------------------------CCcCC------cccCCCCccchHHHHHHHHHHcCCCCCc
Q 000174 1823 ALAVLKEKETAEAKEK-------------------------GDENG------KKRKNGTQTFTRQTLNDICLRRNWPMPL 1871 (1931)
Q Consensus 1823 AL~~L~~~~~~~~~~~-------------------------~~~~~------~~~~~~~~~n~~~~L~e~~~~~~~~~p~ 1871 (1931)
|++.-.....+...+. +.+.+ ..+..+......+.+++.|..+.|++|-
T Consensus 1454 av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~~~~~~a~p~ 1533 (1606)
T KOG0701|consen 1454 AVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPCIEKFWALPP 1533 (1606)
T ss_pred HHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhcccceeecCcccccchHhhcCcCCCC
Confidence 2221111111110000 00000 0011222334567899999999999999
Q ss_pred ceeecccCCCCCceeEEEEEEEecCCCcce-----------eEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1872 YRCVREGGPAHAKRFTYAVRVNTTDKGWTD-----------ECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1872 y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~-----------~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+.++.+.++-|...+.+.........+.+. .|.|...+++|.|+..||...|..+.
T Consensus 1534 ~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1534 RSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred ccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 999999999999888776655544333222 34485555555555555555555544
No 2
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-50 Score=474.24 Aligned_cols=475 Identities=25% Similarity=0.360 Sum_probs=317.5
Q ss_pred CCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC-
Q 000174 299 MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY- 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l- 377 (1931)
-...++|.||......++.+|+++++|||+|||+||++.+...+.+. + +++|||+||++||.|+++.+++.+++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~----~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWF----G-GKVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred cccccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHHhc----C-CeEEEecCCchHHHHHHHHHHHHhCCC
Confidence 34578999999999999999999999999999999999999888763 3 37999999999999999999999977
Q ss_pred --cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 378 --VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 --~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
.+..++|....+. +...| ...+|+|+|||.+.|.|.+|.+.+.++.+||||||||+.++++|..+++.++...
T Consensus 86 ~~~i~~ltGev~p~~-R~~~w----~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 86 EDEIAALTGEVRPEE-REELW----AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hhheeeecCCCChHH-HHHHH----hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 4778999876643 44556 6789999999999999999999999999999999999999999999999888753
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC--eEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS--VVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL 533 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~--~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i 533 (1931)
..|++|||||||.... ..+.....+|+- ..+...+..++..++..-....+..+.+.....+.+.+
T Consensus 161 ---k~~~ilgLTASPGs~~---------ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l 228 (542)
T COG1111 161 ---KNPLILGLTASPGSDL---------EKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLL 228 (542)
T ss_pred ---cCceEEEEecCCCCCH---------HHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHH
Confidence 4599999999998522 356666666663 23333466788888888777777777665555555555
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhccccc-chhhHHHHhh-hccc-ccc-cch--hhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 534 KQMEVAVEEAAQSSSRRSKWQFMGARD-AGAKEELRQV-YGVS-ERT-ESD--GAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 534 ~~l~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~-~~~~-~r~-~~~--~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
..+.....+.+.... ++.... ...++.+... .... ... ... .+.........+.+++
T Consensus 229 ~~~l~~~Lk~L~~~g------~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~----------- 291 (542)
T COG1111 229 RDALKPRLKPLKELG------VIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHAL----------- 291 (542)
T ss_pred HHHHHHHHHHHHHcC------ceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHH-----------
Confidence 544433332222110 000000 0000100000 0000 000 000 0000000000010100
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
.-++. +... .-..|+.++.+.... .+... ...+ +.+.... .
T Consensus 292 -----ellet------qGi~-~~~~Yl~~l~e~~~~---~~sk~--a~~l--------------~~d~~~~--------~ 332 (542)
T COG1111 292 -----ELLET------QGIR-PFYQYLEKLEEEATK---GGSKA--AKSL--------------LADPYFK--------R 332 (542)
T ss_pred -----HHHHh------hChH-HHHHHHHHHHHHhcc---cchHH--HHHH--------------hcChhhH--------H
Confidence 00000 0000 012344333322111 00000 0000 0000000 0
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee-EEEEccCC---Cc
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS-ASLIGHNN---SQ 762 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~-~~l~G~~~---~~ 762 (1931)
.+...+. ....+..+||+..+.++|+++ ....+.|+|||++.|+||+.+..+|... +..+ ..+.|+++ +.
T Consensus 333 al~~~~~-~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~----~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 333 ALRLLIR-ADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI----GIKARVRFIGQASREGDK 407 (542)
T ss_pred HHHHHHH-hccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc----CCcceeEEeecccccccc
Confidence 0000111 123446689999999999987 4567799999999999999999999984 3344 48889653 46
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEecCChhHHHH
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATF 842 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~ 842 (1931)
+|+|++|.+++++||+|++||||||+|+|||||||.||+||+||+-.|+..+|||+|||||.....++++-..+..+..+
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeay 487 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAY 487 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999997555333333333445555
Q ss_pred HHHHHHHHHHHHHH
Q 000174 843 LRNARNSEETLRKE 856 (1931)
Q Consensus 843 l~~~~~~e~~l~~~ 856 (1931)
.....+.++.|.+.
T Consensus 488 y~~s~rke~~m~e~ 501 (542)
T COG1111 488 YYSSRRKEQKMIES 501 (542)
T ss_pred HHHHHHHHHHHHHH
Confidence 55556666666553
No 3
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.2e-46 Score=462.51 Aligned_cols=483 Identities=27% Similarity=0.362 Sum_probs=302.9
Q ss_pred CCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-CC
Q 000174 299 MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-GY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-~l 377 (1931)
.....+|+||.+.+..++.+|+||++|||+|||+||+..+.+++++. ++.+|||+|||++|+.||.+.+...+ +.
T Consensus 58 p~~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw~----p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEWR----PKGKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred cCcccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHhcC----CcceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 44678999999999999999999999999999999999999999875 44789999999999999998887754 55
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccccc-ccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK-MEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~-l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
.+....|+.....-+...| ...+|+|+|||+|.+.|.++... ++.+.+||||||||..++|+|..+|+.++....
T Consensus 134 ~~T~~l~~~~~~~~r~~i~----~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIV----ASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred cceeeccCccCCCchhhhh----cccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 6666667654433334444 78999999999999999987654 499999999999999999999999998887532
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccchhhhHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLK 534 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~ 534 (1931)
..+|||||||||. ++...+...+..|...|+...... ....+++++...|.. +.........++...++
T Consensus 210 --~~~qILgLTASpG-----~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~--~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 210 --QGNQILGLTASPG-----SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD--LSLCERDIEDPFGMIIE 280 (746)
T ss_pred --ccccEEEEecCCC-----ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc--HHHhhhhhhhhHHHHHH
Confidence 2369999999998 345667777888887777543322 345666666666654 22222223334444444
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh-ccccccc-chhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 535 QMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY-GVSERTE-SDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~r~~-~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
.+...+... ........... ............+ ....... ...+..+.. +.........+.-.+++.....+.
T Consensus 281 p~l~~l~~~--~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~-~~~~ll~~~gir~~~~l~~~~~f~ 355 (746)
T KOG0354|consen 281 PLLQQLQEE--GLIEISDKSTS--YEQWVVQAEKAAAPNGPENQRNCFYALHLRK-YNLALLISDGIRFVDALDYLEDFY 355 (746)
T ss_pred HHHHHHHhc--Ccccccccccc--ccchhhhhhhhhccCCCccchhhHHHHHHHH-HHHHHHhhcchhhHHHHhhhhhhc
Confidence 443333211 00000000000 0000000000000 0000000 000000000 000000000000001111111000
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
....... ......+..++..+... +.++..
T Consensus 356 ~e~~~~k----~~~~~~e~~~~~~~~~~----------------------------m~~~~~------------------ 385 (746)
T KOG0354|consen 356 EEVALKK----YLKLELEARLIRNFTEN----------------------------MNELEH------------------ 385 (746)
T ss_pred cccchhH----HHHHHhcchhhHHHHHH----------------------------HHhhhh------------------
Confidence 0000000 00000000000000000 000000
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccccHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQ 768 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~~~~~ 768 (1931)
-.......++|+..|.++|.++ ...++.|+||||++|..|..|..+|... ...++++..++|.+.+ .+|++.+
T Consensus 386 --l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~-~~~~ir~~~fiGq~~s~~~~gmtqk~ 462 (746)
T KOG0354|consen 386 --LSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQL-HELGIKAEIFIGQGKSTQSTGMTQKE 462 (746)
T ss_pred --hhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhh-hhcccccceeeeccccccccccCHHH
Confidence 0011225689999999999876 5678899999999999999999999852 1257899999997654 5899999
Q ss_pred HHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCC-CcEEEEEecCChhHHHHHHHHH
Q 000174 769 MQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG-SDYILMIERGNLSHATFLRNAR 847 (1931)
Q Consensus 769 R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~G-s~~ivlv~~~~~~~~~~l~~~~ 847 (1931)
|+++|++|++|++||||||+|+||||||+.||+||+||...|+..+|||+|| ||+. +++++++. +.. +. ..+...
T Consensus 463 Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t-~~~-~~-~~E~~~ 538 (746)
T KOG0354|consen 463 QKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTT-GSE-VI-EFERNN 538 (746)
T ss_pred HHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEc-chh-HH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 6654 54555544 433 22 233334
Q ss_pred HHHHHHHHHHHhh
Q 000174 848 NSEETLRKEAIER 860 (1931)
Q Consensus 848 ~~e~~l~~~~i~r 860 (1931)
...+.|++..+..
T Consensus 539 ~~~e~lm~~~i~~ 551 (746)
T KOG0354|consen 539 LAKEKLMNQTISK 551 (746)
T ss_pred HhHHHHHHHHHHH
Confidence 4444555555544
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-47 Score=459.08 Aligned_cols=342 Identities=20% Similarity=0.258 Sum_probs=271.8
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHh---hhcCCCcEEEEEe
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDL---QRQNKKMLAVFLV 358 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~---~~~~~~~~vL~Lv 358 (1931)
+...+..+.....+...++..|+|+|..+++.++. +|+|..+.||||||++|++|+..++... ...++.+++|||+
T Consensus 93 f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~ 172 (519)
T KOG0331|consen 93 FQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLA 172 (519)
T ss_pred hhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEc
Confidence 33444444455788899999999999999999999 9999999999999999999988777642 1245578899999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|||||+.|+.+++.++. +++..+++|+.... .+...+..+++|+|+||++|.++++.+.+.++++.++|+|||
T Consensus 173 PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~----~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 173 PTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKG----PQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred CcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCcc----HHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 99999999999999875 56789999998753 445556679999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|+|++ ++|...++.++...+...+ +.|+.|||=.. .+..|.. .++..|..
T Consensus 249 DrMld-mGFe~qI~~Il~~i~~~~r-Qtlm~saTwp~------------~v~~lA~----------------~fl~~~~~ 298 (519)
T KOG0331|consen 249 DRMLD-MGFEPQIRKILSQIPRPDR-QTLMFSATWPK------------EVRQLAE----------------DFLNNPIQ 298 (519)
T ss_pred Hhhhc-cccHHHHHHHHHhcCCCcc-cEEEEeeeccH------------HHHHHHH----------------HHhcCceE
Confidence 99999 6999999999988744333 79999999321 2222222 22222222
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
+.+.... .+
T Consensus 299 i~ig~~~---------~~-------------------------------------------------------------- 307 (519)
T KOG0331|consen 299 INVGNKK---------EL-------------------------------------------------------------- 307 (519)
T ss_pred EEecchh---------hh--------------------------------------------------------------
Confidence 2111000 00
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
.+..
T Consensus 308 -------~a~~--------------------------------------------------------------------- 311 (519)
T KOG0331|consen 308 -------KANH--------------------------------------------------------------------- 311 (519)
T ss_pred -------hhhc---------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.+.+.+.......|...|.++|..+......|+||||+++.+|+.|+..|+. .++++..|
T Consensus 312 ----------------~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~----~~~~a~~i 371 (519)
T KOG0331|consen 312 ----------------NIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR----KGWPAVAI 371 (519)
T ss_pred ----------------chhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh----cCcceeee
Confidence 0000001112346888888999888656778999999999999999999997 57999999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
|| +.+|.+|+.+|+.||+|+++||||||||+||||||+|++|||||+|.+..+||||+|||||+|+++..
T Consensus 372 HG-----d~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 372 HG-----DKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred cc-----cccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 99 99999999999999999999999999999999999999999999999999999999999997766333
No 5
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-47 Score=425.41 Aligned_cols=355 Identities=23% Similarity=0.282 Sum_probs=280.7
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..++.+.+..+...++.+..++..|+++|++++|.++. +++|+.++||||||.+|++||.+.+.. .+...+++||+
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~---~p~~~~~lVLt 136 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQ---EPKLFFALVLT 136 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHc---CCCCceEEEec
Confidence 44566667766777999999999999999999999999 999999999999999999999877765 34568899999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDE 434 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DE 434 (1931)
|||+|+.|+.+.++.+ +|+++.++.|++.. ..+-..+.+.++|+|+||++|.+++.+ +.+++.+++++|+||
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m----~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM----MLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchH----HHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 9999999999999986 48999999999874 334455668999999999999999984 678999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||++++ +.|...+..|+...+. ..+.+++|||-.. .+.+|.. ..+..|.
T Consensus 213 ADrlLd-~dF~~~ld~ILk~ip~--erqt~LfsATMt~------------kv~kL~r----------------asl~~p~ 261 (476)
T KOG0330|consen 213 ADRLLD-MDFEEELDYILKVIPR--ERQTFLFSATMTK------------KVRKLQR----------------ASLDNPV 261 (476)
T ss_pred HHhhhh-hhhHHHHHHHHHhcCc--cceEEEEEeecch------------hhHHHHh----------------hccCCCe
Confidence 999999 5999999999988774 3789999999542 2333321 1122222
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.+.+. ..+..
T Consensus 262 ~v~~s--------~ky~t-------------------------------------------------------------- 271 (476)
T KOG0330|consen 262 KVAVS--------SKYQT-------------------------------------------------------------- 271 (476)
T ss_pred EEecc--------chhcc--------------------------------------------------------------
Confidence 22110 00000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
...+ .+.|+.
T Consensus 272 -v~~l------------------------------kQ~ylf--------------------------------------- 281 (476)
T KOG0330|consen 272 -VDHL------------------------------KQTYLF--------------------------------------- 281 (476)
T ss_pred -hHHh------------------------------hhheEe---------------------------------------
Confidence 0000 001110
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
-....|...|+.+|.+. .+...||||++..+++.++-+|.. -++.+..
T Consensus 282 -------------------------v~~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~----lg~~a~~ 329 (476)
T KOG0330|consen 282 -------------------------VPGKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRN----LGFQAIP 329 (476)
T ss_pred -------------------------ccccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHh----cCcceec
Confidence 01123556678888765 457899999999999999999998 5899999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|| .|++..|..++++|++|.++|||||||++||+|+|.|++|||||.|.+..+||||+||++|+|..+ +.++
T Consensus 330 LhG-----qmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlV 404 (476)
T KOG0330|consen 330 LHG-----QMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLV 404 (476)
T ss_pred ccc-----hhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999774 4444
Q ss_pred ecCChhHHHHHHHHHHHHHHHHH
Q 000174 833 ERGNLSHATFLRNARNSEETLRK 855 (1931)
Q Consensus 833 ~~~~~~~~~~l~~~~~~e~~l~~ 855 (1931)
.. ..++.++++|..+.+
T Consensus 405 tq------yDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 405 TQ------YDVELVQRIEHALGK 421 (476)
T ss_pred eh------hhhHHHHHHHHHHhc
Confidence 42 345566666665543
No 6
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=100.00 E-value=1e-45 Score=417.88 Aligned_cols=410 Identities=26% Similarity=0.331 Sum_probs=320.0
Q ss_pred EcCCcccccccCChHHHHHhhchhhHHHHHHHHHHHHHHhhhcCCCCChhHHH-HHhccccCCC----------------
Q 000174 1336 FLPPELCFIHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYPVPASKIL-EALTAASCQE---------------- 1398 (1931)
Q Consensus 1336 ~L~Pelc~v~~lp~~~~~~~~~lPsi~~rl~~~l~a~~l~~~l~~~~~~~~ll-~AlT~~s~~~---------------- 1398 (1931)
.++.+-....++-.++++-++++|-..|.|-...-..-|++.|||.|.+..+| -||||||...
T Consensus 8 ~~~~~gf~~tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tnc 87 (533)
T KOG1817|consen 8 ELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNC 87 (533)
T ss_pred eeccchHHHhCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhcccccc
Confidence 34444555678899999999999999999876665677889999999999999 5999998510
Q ss_pred -----------------------------------------CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHH
Q 000174 1399 -----------------------------------------TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMR 1437 (1931)
Q Consensus 1399 -----------------------------------------~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R 1437 (1931)
...+||||||||++..+++|.++|..+|...||-|...|
T Consensus 88 g~r~~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyr 167 (533)
T KOG1817|consen 88 GIRQPKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYR 167 (533)
T ss_pred CcCCcccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHH
Confidence 126899999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCcccccc
Q 000174 1438 QQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMED 1517 (1931)
Q Consensus 1438 ~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1517 (1931)
..+|.|.+|+.+|+++.+..++.-.. |+...+. .
T Consensus 168 ta~vqnr~la~lakklrkd~fl~yah---------g~dl~~~---------------------------------~---- 201 (533)
T KOG1817|consen 168 TAIVQNRHLAKLAKKLRKDEFLLYAH---------GYDLCFE---------------------------------T---- 201 (533)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhc---------CcchhhH---------------------------------H----
Confidence 99999999999999999999887432 1111100 0
Q ss_pred CcccCCCCCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHhhc--cccCCCCcCCCCCC--CCCCCcc-------c
Q 000174 1518 GELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGI--QVESDPEEVGCPSR--PACVPES-------V 1586 (1931)
Q Consensus 1518 ~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~i--~~~~~~~~~~~~~~--~~~~p~~-------~ 1586 (1931)
--...+|+||||+|||.|+++|...+...-..... .......+...... ....|.. .
T Consensus 202 ------------E~Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~ 269 (533)
T KOG1817|consen 202 ------------ELKHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKY 269 (533)
T ss_pred ------------HHHHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccC
Confidence 01368999999999999999998777655322111 11000000000000 0000100 0
Q ss_pred cchhhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 000174 1587 LRSVDFHALEDALKIKFKDRGLLVEAITHASRPSS--GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAA 1664 (1931)
Q Consensus 1587 ~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~l 1664 (1931)
.....+-++|+++|..|.+++||.+|+|-.|.+.+ ...+|||||||||+||++++|++||.+||+..+|.|+.||+.|
T Consensus 270 Ppllp~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssL 349 (533)
T KOG1817|consen 270 PPLLPLTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSL 349 (533)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHH
Confidence 01123568999999999999999999999997632 3469999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCce
Q 000174 1665 VNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTS 1744 (1931)
Q Consensus 1665 v~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~ 1744 (1931)
|||++-+.+|..+|+++++..+..... + .....|.+||+|||+|||+|+|.|..
T Consensus 350 VsNetqakva~~lgf~e~li~n~~~k~-----~-------------------~~lk~K~~ADlfEAfiGaLyvD~~le-- 403 (533)
T KOG1817|consen 350 VSNETQAKVADDLGFHEYLITNFDLKD-----F-------------------QNLKLKDYADLFEAFIGALYVDKGLE-- 403 (533)
T ss_pred hccHHHHHHHHHhCCchhhhhCcchhh-----h-------------------hhhhHHHHHHHHHHHHHHHhhcCCcH--
Confidence 999999999999999999987654311 0 12457999999999999999997755
Q ss_pred eEEeeeccCCCCCCCC---CCCCCCChHHHHHHHHhhcCC------c-eeEEecc-C----CeEEEEEEECCEEEEEeec
Q 000174 1745 VVWQVFQPLLDPMVTP---ETLPMHPVRELQERCQQQAEG------L-EYKASRS-G----NLATVEVYIDGVQVGVAQN 1809 (1931)
Q Consensus 1745 ~v~~~~~~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~------~-~y~~~~~-g----~~f~v~V~v~g~~~~~g~g 1809 (1931)
.|++|+..++.|.|.. .....+|++.|+.+|...... + -|.+... | +.|+|+|+++|+.+|+|.|
T Consensus 404 ~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G 483 (533)
T KOG1817|consen 404 YCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVG 483 (533)
T ss_pred HHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccC
Confidence 5667788888886654 334679999999999875433 2 4555443 3 4699999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 000174 1810 PQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1810 ~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
++.|.|+.+||+.||+.++.
T Consensus 484 ~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 484 SNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred chHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999985
No 7
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=411.02 Aligned_cols=367 Identities=21% Similarity=0.237 Sum_probs=270.2
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh------cCCCcE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR------QNKKML 353 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~------~~~~~~ 353 (1931)
..++..+......+.+.+.+|..|+|+|..++|..++ +|+|..++||||||++|++|+.-.+..++. .-.++.
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 4556666555556889999999999999999999998 999999999999999999999888876652 345688
Q ss_pred EEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEE
Q 000174 354 AVFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLL 430 (1931)
Q Consensus 354 vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lL 430 (1931)
++||+||++|+.|+.++-.++. ++++..+.|+.+.+... -++..+++|+|+||++|.+.|.+.++-++++.++
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~----fqls~gceiviatPgrLid~Lenr~lvl~qctyv 400 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG----FQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYV 400 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh----hhhhccceeeecCchHHHHHHHHHHHHhccCceE
Confidence 9999999999999999887764 78999999998754321 2344799999999999999999999999999999
Q ss_pred EEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhC
Q 000174 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHV 510 (1931)
Q Consensus 431 V~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~ 510 (1931)
|+|||++|.+ ++|......++...|..+ |.|.. +.. ..-..+...+..
T Consensus 401 vldeadrmiD-mgfE~dv~~iL~~mPssn--------~k~~t-de~-------~~~~~~~~~~~~--------------- 448 (673)
T KOG0333|consen 401 VLDEADRMID-MGFEPDVQKILEQMPSSN--------AKPDT-DEK-------EGEERVRKNFSS--------------- 448 (673)
T ss_pred eccchhhhhc-ccccHHHHHHHHhCCccc--------cCCCc-cch-------hhHHHHHhhccc---------------
Confidence 9999999998 689888888887765431 12211 000 000011111110
Q ss_pred CCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHH
Q 000174 511 PMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590 (1931)
Q Consensus 511 ~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 590 (1931)
.......+.-+..+.+.. ..+
T Consensus 449 --~k~yrqT~mftatm~p~v---erl------------------------------------------------------ 469 (673)
T KOG0333|consen 449 --SKKYRQTVMFTATMPPAV---ERL------------------------------------------------------ 469 (673)
T ss_pred --ccceeEEEEEecCCChHH---HHH------------------------------------------------------
Confidence 000000000000000000 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 670 (1931)
.+.|+.
T Consensus 470 ---------------------------------------ar~ylr----------------------------------- 475 (673)
T KOG0333|consen 470 ---------------------------------------ARSYLR----------------------------------- 475 (673)
T ss_pred ---------------------------------------HHHHhh-----------------------------------
Confidence 001111
Q ss_pred ccccccccccccccCC--CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCC
Q 000174 671 EIEEGELLDSHVVSGG--EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLS 748 (1931)
Q Consensus 671 ~l~~~~l~~~~~~s~~--e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~ 748 (1931)
++.+++.| ....+.+++.+.....+.|+.+|+++|... -...+|||++++..|+.|++.|.+ .
T Consensus 476 --------~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK----~ 540 (673)
T KOG0333|consen 476 --------RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEK----A 540 (673)
T ss_pred --------CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhh----c
Confidence 11111111 011112333444446678999999999875 456899999999999999999998 5
Q ss_pred CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 749 ~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
++++..+|| +.++.+|+.+|+.||.|..+||||||||+||||||+|.+|||||++++..+|+||+|||||+|+.+
T Consensus 541 g~~~~tlHg-----~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~G 615 (673)
T KOG0333|consen 541 GYKVTTLHG-----GKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSG 615 (673)
T ss_pred cceEEEeeC-----CccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCc
Confidence 799999999 999999999999999999999999999999999999999999999999999999999999999884
Q ss_pred E--EEEecCC
Q 000174 829 I--LMIERGN 836 (1931)
Q Consensus 829 i--vlv~~~~ 836 (1931)
+ .|+...+
T Consensus 616 taiSflt~~d 625 (673)
T KOG0333|consen 616 TAISFLTPAD 625 (673)
T ss_pred eeEEEeccch
Confidence 4 4455444
No 8
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-43 Score=408.01 Aligned_cols=355 Identities=21% Similarity=0.277 Sum_probs=271.8
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..+|.++...-....++..+||..|+|+|..+||.++- +|++.|+.||||||.+|++||++.+...+.+-.-.+|||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 34566666655566899999999999999999999887 99999999999999999999998887665555567899999
Q ss_pred CChhHHHHHHHHHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeC
Q 000174 359 PKVPLVYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDE 434 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DE 434 (1931)
|||+|+.|.+.+.++ ++.+.|++..||.++. .+-..+...++|||+|||+|.|+|++. .+.++++.+||+||
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk----~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLK----AQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHH----HHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 999999999988776 5689999999998763 333344579999999999999999985 47899999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||+|+.. .|...|.+++..+++. .|.+++|||-.. .+..|-. -.+.+|.
T Consensus 336 ADRMLee-gFademnEii~lcpk~--RQTmLFSATMte------------eVkdL~s----------------lSL~kPv 384 (691)
T KOG0338|consen 336 ADRMLEE-GFADEMNEIIRLCPKN--RQTMLFSATMTE------------EVKDLAS----------------LSLNKPV 384 (691)
T ss_pred HHHHHHH-HHHHHHHHHHHhcccc--ccceeehhhhHH------------HHHHHHH----------------hhcCCCe
Confidence 9999996 9999999999999875 788999999542 3333322 2233454
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.+.+.-... ....|.+
T Consensus 385 rifvd~~~~-~a~~LtQ--------------------------------------------------------------- 400 (691)
T KOG0338|consen 385 RIFVDPNKD-TAPKLTQ--------------------------------------------------------------- 400 (691)
T ss_pred EEEeCCccc-cchhhhH---------------------------------------------------------------
Confidence 443321110 0000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
.|++
T Consensus 401 -------------------------------------EFiR--------------------------------------- 404 (691)
T KOG0338|consen 401 -------------------------------------EFIR--------------------------------------- 404 (691)
T ss_pred -------------------------------------HHhe---------------------------------------
Confidence 0000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
+.......+-..|..++... -..++||||.++..|..|.-+|.- -|+++.-
T Consensus 405 ----------------------IR~~re~dRea~l~~l~~rt---f~~~~ivFv~tKk~AHRl~IllGL----lgl~agE 455 (691)
T KOG0338|consen 405 ----------------------IRPKREGDREAMLASLITRT---FQDRTIVFVRTKKQAHRLRILLGL----LGLKAGE 455 (691)
T ss_pred ----------------------eccccccccHHHHHHHHHHh---cccceEEEEehHHHHHHHHHHHHH----hhchhhh
Confidence 00000011122233333332 146899999999999999888764 5899999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEec
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
+|| +++|.+|.+.|++|++++++||||||||+|||||+.+..||||++|.+...|+||+||+.|+|..+..+.-.
T Consensus 456 lHG-----sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlv 530 (691)
T KOG0338|consen 456 LHG-----SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLV 530 (691)
T ss_pred hcc-----cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEe
Confidence 999 999999999999999999999999999999999999999999999999999999999999999885544433
Q ss_pred CChhHHHHHH
Q 000174 835 GNLSHATFLR 844 (1931)
Q Consensus 835 ~~~~~~~~l~ 844 (1931)
++. +...++
T Consensus 531 gE~-dRkllK 539 (691)
T KOG0338|consen 531 GES-DRKLLK 539 (691)
T ss_pred ccc-cHHHHH
Confidence 332 244443
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-43 Score=388.60 Aligned_cols=358 Identities=20% Similarity=0.251 Sum_probs=277.7
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
..+|...|..++..+.+..+++.+|||+|..+||.+++ +|||.++.||||||.+|.+||.+.+.. .+.+..++||.
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse---dP~giFalvlT 82 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE---DPYGIFALVLT 82 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc---CCCcceEEEec
Confidence 45677788888888999999999999999999999999 999999999999999999999887664 45677899999
Q ss_pred CChhHHHHHHHHHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc----cccccceeEEE
Q 000174 359 PKVPLVYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS----IIKMEAINLLI 431 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~----~l~l~~i~lLV 431 (1931)
||++|+.|+++.|.. ..++++.+++|++..-. +-..+...+||||+||++|.+++... .+.+.++.++|
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~----qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIM----QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhh----hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 999999999998875 35899999999986422 22334478999999999999998764 35688999999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
+|||++++.. .|..+++.+....|.. .+.++||||... .+..+. .. .+.
T Consensus 159 lDEADrvL~~-~f~d~L~~i~e~lP~~--RQtLlfSATitd------------~i~ql~---~~-------------~i~ 207 (442)
T KOG0340|consen 159 LDEADRVLAG-CFPDILEGIEECLPKP--RQTLLFSATITD------------TIKQLF---GC-------------PIT 207 (442)
T ss_pred ecchhhhhcc-chhhHHhhhhccCCCc--cceEEEEeehhh------------HHHHhh---cC-------------Ccc
Confidence 9999999995 8999999988877653 689999999653 222221 10 011
Q ss_pred CCceeEEEe-ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHH
Q 000174 512 MPSEVVVEY-DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590 (1931)
Q Consensus 512 ~p~e~~~~y-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 590 (1931)
.+....+.. +....
T Consensus 208 k~~a~~~e~~~~vst----------------------------------------------------------------- 222 (442)
T KOG0340|consen 208 KSIAFELEVIDGVST----------------------------------------------------------------- 222 (442)
T ss_pred cccceEEeccCCCCc-----------------------------------------------------------------
Confidence 110000000 00000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 670 (1931)
.+
T Consensus 223 ------------------------------------------------------------------------------ve 224 (442)
T KOG0340|consen 223 ------------------------------------------------------------------------------VE 224 (442)
T ss_pred ------------------------------------------------------------------------------hh
Confidence 00
Q ss_pred ccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc
Q 000174 671 EIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV 750 (1931)
Q Consensus 671 ~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~ 750 (1931)
.|..++ .......|-..|+.+|..++..+...+||||++..+++.|+..|+.+ .+
T Consensus 225 tL~q~y---------------------I~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l----e~ 279 (442)
T KOG0340|consen 225 TLYQGY---------------------ILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL----EV 279 (442)
T ss_pred hhhhhe---------------------eecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh----ce
Confidence 000000 01122345567788888886557788999999999999999999984 68
Q ss_pred eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--E
Q 000174 751 KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--Y 828 (1931)
Q Consensus 751 ~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ 828 (1931)
++..+|+ .|+|++|...|.+||++..+||||||||+||+|||.|++|||||+|.+|..||||+||++|+|.. .
T Consensus 280 r~~~lHs-----~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a 354 (442)
T KOG0340|consen 280 RVVSLHS-----QMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA 354 (442)
T ss_pred eeeehhh-----cchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999888877 3
Q ss_pred EEEEecCChhHHHHHHHHHHHHHHHH
Q 000174 829 ILMIERGNLSHATFLRNARNSEETLR 854 (1931)
Q Consensus 829 ivlv~~~~~~~~~~l~~~~~~e~~l~ 854 (1931)
+.++.. ..++.++.+|+.+.
T Consensus 355 iSivt~------rDv~l~~aiE~~ig 374 (442)
T KOG0340|consen 355 ISIVTQ------RDVELLQAIEEEIG 374 (442)
T ss_pred EEEech------hhHHHHHHHHHHHh
Confidence 444442 23455566666554
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-41 Score=439.48 Aligned_cols=347 Identities=18% Similarity=0.221 Sum_probs=261.5
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~L 357 (1931)
.+|...+..+...+.+.+.++.+|+++|.+++|.++. +|+|++++||||||++|++|+...+.... ..+.++.+|||
T Consensus 130 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL 209 (545)
T PTZ00110 130 VSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVL 209 (545)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 3444444444455889999999999999999999999 99999999999999999999876554321 12345789999
Q ss_pred eCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 358 VPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
|||++||.|+.++++.+. ++++..++|+... ..++..+..+++|+|+||++|.+++.++...+.++++|||||
T Consensus 210 ~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~----~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 210 APTRELAEQIREQCNKFGASSKIRNTVAYGGVPK----RGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred CChHHHHHHHHHHHHHHhcccCccEEEEeCCCCH----HHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 999999999999999864 5778888888653 234455557899999999999999999888999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||++.+ +.|...++.+...... .++++++|||... .+..+...+.. ..|.
T Consensus 286 Ad~mld-~gf~~~i~~il~~~~~--~~q~l~~SAT~p~------------~v~~l~~~l~~---------------~~~v 335 (545)
T PTZ00110 286 ADRMLD-MGFEPQIRKIVSQIRP--DRQTLMWSATWPK------------EVQSLARDLCK---------------EEPV 335 (545)
T ss_pred HHhhhh-cchHHHHHHHHHhCCC--CCeEEEEEeCCCH------------HHHHHHHHHhc---------------cCCE
Confidence 999998 4788888877765532 4789999999642 12222111100 0010
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
...+ ..... .
T Consensus 336 ~i~v--g~~~l------------------------------------------------~-------------------- 345 (545)
T PTZ00110 336 HVNV--GSLDL------------------------------------------------T-------------------- 345 (545)
T ss_pred EEEE--CCCcc------------------------------------------------c--------------------
Confidence 0000 00000 0
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
. ...+
T Consensus 346 ---------------------------------------------------------------------~----~~~i-- 350 (545)
T PTZ00110 346 ---------------------------------------------------------------------A----CHNI-- 350 (545)
T ss_pred ---------------------------------------------------------------------c----CCCe--
Confidence 0 0000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.+.+.......|...|.++|.... ....++||||+++.+|+.|+..|.. .++.+..
T Consensus 351 -------------------~q~~~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ 406 (545)
T PTZ00110 351 -------------------KQEVFVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL----DGWPALC 406 (545)
T ss_pred -------------------eEEEEEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH----cCCcEEE
Confidence 000000011345666667776542 2567999999999999999999987 6789999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|| ++++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.++.+|+||+|||||.|..+ +.++
T Consensus 407 ihg-----~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 407 IHG-----DKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred EEC-----CCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999873 4444
Q ss_pred ecC
Q 000174 833 ERG 835 (1931)
Q Consensus 833 ~~~ 835 (1931)
..+
T Consensus 482 ~~~ 484 (545)
T PTZ00110 482 TPD 484 (545)
T ss_pred Ccc
Confidence 433
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-42 Score=435.47 Aligned_cols=341 Identities=22% Similarity=0.294 Sum_probs=266.9
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
..|.+.+..+...+++.+.+|..|+|+|..++|.++. +|+|+.++||||||++|++|+.+.+... .......+|||+|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-VERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-cccCCCceEEECC
Confidence 4456666555566899999999999999999999999 9999999999999999999998886632 1111112999999
Q ss_pred ChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||+||.|++++++.+. ++++..++|+.+... +...+-.+++|||+||++|+|++.++.+.+..+.++|+|||
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~----q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRK----QIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHH----HHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 9999999999998853 578999999977532 22333347999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|+|++ ++|...+..+...++. ..+++++|||... .+..|.. .+...|..
T Consensus 184 DrmLd-~Gf~~~i~~I~~~~p~--~~qtllfSAT~~~------------~i~~l~~----------------~~l~~p~~ 232 (513)
T COG0513 184 DRMLD-MGFIDDIEKILKALPP--DRQTLLFSATMPD------------DIRELAR----------------RYLNDPVE 232 (513)
T ss_pred hhhhc-CCCHHHHHHHHHhCCc--ccEEEEEecCCCH------------HHHHHHH----------------HHccCCcE
Confidence 99999 5999999999988776 5899999999652 1222211 22223322
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
..+.....
T Consensus 233 i~v~~~~~------------------------------------------------------------------------ 240 (513)
T COG0513 233 IEVSVEKL------------------------------------------------------------------------ 240 (513)
T ss_pred EEEccccc------------------------------------------------------------------------
Confidence 21110000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
......+.+.
T Consensus 241 ----------------------------------------------------------------------~~~~~~i~q~ 250 (513)
T COG0513 241 ----------------------------------------------------------------------ERTLKKIKQF 250 (513)
T ss_pred ----------------------------------------------------------------------cccccCceEE
Confidence 0000000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCC-HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVT-PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s-~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
+...... .|+..|..+|... ...++||||+++..++.|+..|.. .++++..
T Consensus 251 ---------------------~~~v~~~~~k~~~L~~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~----~g~~~~~ 302 (513)
T COG0513 251 ---------------------YLEVESEEEKLELLLKLLKDE---DEGRVIVFVRTKRLVEELAESLRK----RGFKVAA 302 (513)
T ss_pred ---------------------EEEeCCHHHHHHHHHHHHhcC---CCCeEEEEeCcHHHHHHHHHHHHH----CCCeEEE
Confidence 0001111 4888888888764 234799999999999999999998 6899999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
||| ++++.+|.+++++|++|+++|||||||++||||||++++|||||+|.++..|+||+|||||+|..+..+.
T Consensus 303 lhG-----~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~ 375 (513)
T COG0513 303 LHG-----DLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375 (513)
T ss_pred ecC-----CCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEE
Confidence 999 9999999999999999999999999999999999999999999999999999999999999998844433
No 12
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.2e-42 Score=401.32 Aligned_cols=344 Identities=20% Similarity=0.263 Sum_probs=267.1
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
...+++.+||..+|++|...++.++. +|+++++.||+|||++|++|+.+++..... ...+..++||||||+|+.|.+.
T Consensus 93 t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ 172 (543)
T KOG0342|consen 93 TLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFA 172 (543)
T ss_pred HHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHH
Confidence 45899999999999999999999999 999999999999999999999888776542 3455679999999999999999
Q ss_pred HHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCCcH
Q 000174 370 VIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 370 ~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
++++.+ +..+.++.|+.+- ...-+++..+++|+|+|||+|+|+|++. .+....++++|+|||||+++ .+|
T Consensus 173 eak~Ll~~h~~~~v~~viGG~~~----~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd-~GF 247 (543)
T KOG0342|consen 173 EAKELLKYHESITVGIVIGGNNF----SVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLD-IGF 247 (543)
T ss_pred HHHHHHhhCCCcceEEEeCCccc----hHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhh-ccc
Confidence 998865 5678999998753 3344455569999999999999999983 34556778999999999999 699
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccch
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
...|..++...+. ..+.+++|||-.. .+..|... .-.+....+.....
T Consensus 248 ~~di~~Ii~~lpk--~rqt~LFSAT~~~------------kV~~l~~~-----------------~L~~d~~~v~~~d~- 295 (543)
T KOG0342|consen 248 EEDVEQIIKILPK--QRQTLLFSATQPS------------KVKDLARG-----------------ALKRDPVFVNVDDG- 295 (543)
T ss_pred HHHHHHHHHhccc--cceeeEeeCCCcH------------HHHHHHHH-----------------hhcCCceEeecCCC-
Confidence 9999999998874 5889999999542 22222221 00011111111000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
T Consensus 296 -------------------------------------------------------------------------------- 295 (543)
T KOG0342|consen 296 -------------------------------------------------------------------------------- 295 (543)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
.....++.++++++..
T Consensus 296 -----------------------------------------------------------~~~~The~l~Qgyvv~----- 311 (543)
T KOG0342|consen 296 -----------------------------------------------------------GERETHERLEQGYVVA----- 311 (543)
T ss_pred -----------------------------------------------------------CCcchhhcccceEEec-----
Confidence 0001122222222221
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
....++..|..+|++.. ...|+||||.+...+.+++++|+. -.+++..||| .+
T Consensus 312 ----------------~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~----~dlpv~eiHg-----k~ 364 (543)
T KOG0342|consen 312 ----------------PSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNY----IDLPVLEIHG-----KQ 364 (543)
T ss_pred ----------------cccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhh----cCCchhhhhc-----CC
Confidence 22334677888888752 238999999999999999999997 4689999999 99
Q ss_pred cHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCChhHHHH
Q 000174 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGNLSHATF 842 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~~~~~~~ 842 (1931)
+|..|..+..+|++.+.-|||||||++||+|+|+|++||+||+|.++.+||||+|||+|.|.. .++++.+.+ ..|
T Consensus 365 ~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E---l~F 441 (543)
T KOG0342|consen 365 KQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE---LGF 441 (543)
T ss_pred cccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH---HHH
Confidence 999999999999999999999999999999999999999999999999999999999998876 555555433 444
Q ss_pred HHHH
Q 000174 843 LRNA 846 (1931)
Q Consensus 843 l~~~ 846 (1931)
++.+
T Consensus 442 lr~L 445 (543)
T KOG0342|consen 442 LRYL 445 (543)
T ss_pred HHHH
Confidence 4433
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-41 Score=425.04 Aligned_cols=342 Identities=20% Similarity=0.204 Sum_probs=260.2
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAV 355 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL 355 (1931)
..|.+.+..+...+++...++..|+|+|.++++.++. +|+|+++|||||||++|++|+.+.+..... ...+.++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 3455555544566889999999999999999999999 999999999999999999999877654321 12346899
Q ss_pred EEeCChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEE
Q 000174 356 FLVPKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLIL 432 (1931)
Q Consensus 356 ~LvPT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~ 432 (1931)
||+||++||.|+.+++..+ +++++..++|+...+ ..+.....+++|+|+||++|.+++.++.+.+.++++|||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~----~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lVi 163 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYD----KQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVL 163 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEE
Confidence 9999999999998887765 478999999986542 233333457899999999999999998999999999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPM 512 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~ 512 (1931)
||||++.+. .|...+..++...+.....+.+++|||+.. .+..+.. .....
T Consensus 164 DEad~l~~~-~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~------------~~~~~~~----------------~~~~~ 214 (423)
T PRK04837 164 DEADRMFDL-GFIKDIRWLFRRMPPANQRLNMLFSATLSY------------RVRELAF----------------EHMNN 214 (423)
T ss_pred ecHHHHhhc-ccHHHHHHHHHhCCCccceeEEEEeccCCH------------HHHHHHH----------------HHCCC
Confidence 999999884 788888888877665445667999999752 1111110 11111
Q ss_pred CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH
Q 000174 513 PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592 (1931)
Q Consensus 513 p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~ 592 (1931)
|....+ ......
T Consensus 215 p~~i~v--~~~~~~------------------------------------------------------------------ 226 (423)
T PRK04837 215 PEYVEV--EPEQKT------------------------------------------------------------------ 226 (423)
T ss_pred CEEEEE--cCCCcC------------------------------------------------------------------
Confidence 211111 000000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccc
Q 000174 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEI 672 (1931)
Q Consensus 593 ~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 672 (1931)
...+
T Consensus 227 ----------------------------------------------------------------------------~~~i 230 (423)
T PRK04837 227 ----------------------------------------------------------------------------GHRI 230 (423)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 0000
Q ss_pred ccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 673 EEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 673 ~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
.. .........|...|..++... ...++||||+++..++.|++.|.. .++++
T Consensus 231 ~~---------------------~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~----~g~~v 282 (423)
T PRK04837 231 KE---------------------ELFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAA----DGHRV 282 (423)
T ss_pred eE---------------------EEEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHh----CCCcE
Confidence 00 000001123555566666442 357899999999999999999987 68899
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
..+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|+.+..++
T Consensus 283 ~~lhg-----~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~ 357 (423)
T PRK04837 283 GLLTG-----DVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSIS 357 (423)
T ss_pred EEecC-----CCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEE
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999998854443
No 14
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-41 Score=385.91 Aligned_cols=338 Identities=21% Similarity=0.282 Sum_probs=262.1
Q ss_pred CcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCC--cEEEEEeCChhHHHH
Q 000174 290 GKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKK--MLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~--~~vL~LvPT~~Lv~Q 366 (1931)
+...+++...||...||+|..++|.+++ +|+++-++||||||++|++|+.+.+.+.....++ .-+|||+|||+|+.|
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 4456889999999999999999999999 9999999999999999999999998544333222 369999999999999
Q ss_pred HHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccC
Q 000174 367 QAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 367 ~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~ 440 (1931)
+.+++..+. .+.+.++.|+..++. +-..+ .-++++|+|+|||+|.+++.+.. +.+..+.+||+||||++++
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~-Di~~f--kee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEE-DIKTF--KEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHH-HHHHH--HHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 999988754 688999999977643 11222 12589999999999999999843 5566999999999999998
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEe
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEY 520 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y 520 (1931)
++|...+..++...|+. .+.=++|||-.. ....|- ...+..|..+.+.-
T Consensus 172 -mgFe~~~n~ILs~LPKQ--RRTGLFSATq~~------------~v~dL~----------------raGLRNpv~V~V~~ 220 (567)
T KOG0345|consen 172 -MGFEASVNTILSFLPKQ--RRTGLFSATQTQ------------EVEDLA----------------RAGLRNPVRVSVKE 220 (567)
T ss_pred -ccHHHHHHHHHHhcccc--cccccccchhhH------------HHHHHH----------------HhhccCceeeeecc
Confidence 79999999999998875 566778999432 111111 01122232221110
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHh
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg 600 (1931)
..... .
T Consensus 221 k~~~~--------------------------------------------------------------------------t 226 (567)
T KOG0345|consen 221 KSKSA--------------------------------------------------------------------------T 226 (567)
T ss_pred ccccc--------------------------------------------------------------------------C
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
...+.-.
T Consensus 227 --------------------------------------------------------------------PS~L~~~----- 233 (567)
T KOG0345|consen 227 --------------------------------------------------------------------PSSLALE----- 233 (567)
T ss_pred --------------------------------------------------------------------chhhcce-----
Confidence 0000000
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
........|+..|+++|... ...|+|||..+...+++...+|..+ +....+..+||
T Consensus 234 ----------------Y~v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~~~--l~~~~i~~iHG--- 289 (567)
T KOG0345|consen 234 ----------------YLVCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFSRL--LKKREIFSIHG--- 289 (567)
T ss_pred ----------------eeEecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHHHH--hCCCcEEEecc---
Confidence 00012246888999999764 5789999999999999999999876 36788999999
Q ss_pred CccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
.|++..|..++++|++-.-.+|+||||++||||||++++||+||+|.++..|+||.|||+|.|+. .++|+.+
T Consensus 290 --K~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 290 --KMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred --hhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 99999999999999997777999999999999999999999999999999999999999999887 5555554
No 15
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.7e-40 Score=425.82 Aligned_cols=342 Identities=22% Similarity=0.294 Sum_probs=255.2
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAVF 356 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL~ 356 (1931)
.|...+..+...+.+.+.+|..|+|+|.++++.++. +|+|++++||||||++|++|+...+..... ...++++||
T Consensus 122 ~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLI 201 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMV 201 (518)
T ss_pred CHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEE
Confidence 344444444455889999999999999999999999 999999999999999999998876643221 234678999
Q ss_pred EeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEe
Q 000174 357 LVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~D 433 (1931)
|+||++|+.|+.++++.+. ++++..+.|+.... .+...+..+++|+|+||++|.+++.++.+.+.++.+||||
T Consensus 202 L~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~----~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViD 277 (518)
T PLN00206 202 LTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMP----QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLD 277 (518)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH----HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEee
Confidence 9999999999998888754 56777788876532 2233445689999999999999999888899999999999
Q ss_pred CCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 434 EaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
|||++.+. +|...+..++...+ .++++++|||... .+..+...+.. .+
T Consensus 278 Ead~ml~~-gf~~~i~~i~~~l~---~~q~l~~SATl~~------------~v~~l~~~~~~----------------~~ 325 (518)
T PLN00206 278 EVDCMLER-GFRDQVMQIFQALS---QPQVLLFSATVSP------------EVEKFASSLAK----------------DI 325 (518)
T ss_pred cHHHHhhc-chHHHHHHHHHhCC---CCcEEEEEeeCCH------------HHHHHHHHhCC----------------CC
Confidence 99999984 67777666766543 4799999999753 22222222111 01
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
.. +........ .
T Consensus 326 ~~--i~~~~~~~~---------------------~--------------------------------------------- 337 (518)
T PLN00206 326 IL--ISIGNPNRP---------------------N--------------------------------------------- 337 (518)
T ss_pred EE--EEeCCCCCC---------------------C---------------------------------------------
Confidence 00 000000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
..
T Consensus 338 ----------------------------------------------------------------------------~~-- 339 (518)
T PLN00206 338 ----------------------------------------------------------------------------KA-- 339 (518)
T ss_pred ----------------------------------------------------------------------------cc--
Confidence 00
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
+.+.+.......|...|.++|.... ....++||||+++..++.|++.|... .++++.
T Consensus 340 -------------------v~q~~~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~ 396 (518)
T PLN00206 340 -------------------VKQLAIWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVV---TGLKAL 396 (518)
T ss_pred -------------------eeEEEEeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhc---cCcceE
Confidence 0000000011234455666665431 22357999999999999999999753 478899
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEE
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILM 831 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivl 831 (1931)
.+|| ++++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|.. .++|
T Consensus 397 ~~Hg-----~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 397 SIHG-----EKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred EeeC-----CCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999876 3444
Q ss_pred Ee
Q 000174 832 IE 833 (1931)
Q Consensus 832 v~ 833 (1931)
+.
T Consensus 472 ~~ 473 (518)
T PLN00206 472 VN 473 (518)
T ss_pred Ec
Confidence 44
No 16
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=3e-42 Score=402.75 Aligned_cols=223 Identities=28% Similarity=0.428 Sum_probs=190.5
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||.+||++++|.||.+|+.||||++|+
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~---e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA 79 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA---THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLY 79 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc---ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHH
Confidence 56799999999999999999999999854 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|..+||++||+.+.++.. .++...+++|+|+|||||||||+|+|++ .++.|+.
T Consensus 80 ~IAr~LGL~d~Lrlg~gE~~-----------------------sgG~~~~sILADvFEALIGAIYLDsG~e--~a~~fI~ 134 (467)
T PRK14718 80 EIAQALNISDGLRLGEGELR-----------------------SGGFRRPSILADAFEAIIGAVFLDGGFE--AAQGVIK 134 (467)
T ss_pred HHHHHcCchHHHhhCCcccc-----------------------cCCCCChhHHHHHHHHHHHHHHHccCHH--HHHHHHH
Confidence 99999999999998776532 2334679999999999999999999975 5666676
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHhhcCCceeEEeccCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1752 PLLDPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1752 ~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
++|.+++....
T Consensus 135 ~ll~p~i~~~d--------------------------------------------------------------------- 145 (467)
T PRK14718 135 RLYVPILDHID--------------------------------------------------------------------- 145 (467)
T ss_pred HHHHHHHhhhc---------------------------------------------------------------------
Confidence 66654321100
Q ss_pred hhhhhccCCcCCcccCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCH
Q 000174 1832 TAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSV 1911 (1931)
Q Consensus 1832 ~~~~~~~~~~~~~~~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sK 1911 (1931)
......||++.||||||++++..|.|.++.++||.|.+.|++.|.|++... .++|.| +||
T Consensus 146 ---------------~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~--~G~G~G---~SK 205 (467)
T PRK14718 146 ---------------PRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDI--KVSGSG---ASR 205 (467)
T ss_pred ---------------ccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeee--EEEEEc---CCH
Confidence 000123789999999999999999999999999999999999999975322 248899 999
Q ss_pred HHHHHHHHHHHHHHHhhhCC
Q 000174 1912 KKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1912 K~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
|+|+|.||+.||++|....|
T Consensus 206 KeAEQ~AAk~AL~kL~~~~~ 225 (467)
T PRK14718 206 RAAEQAAAKKALDEVTAVAP 225 (467)
T ss_pred HHHHHHHHHHHHHHhcccch
Confidence 99999999999999986543
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.9e-40 Score=420.45 Aligned_cols=331 Identities=21% Similarity=0.271 Sum_probs=258.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|.+.+..+...+++.++++..|+|+|.++++.+++ +|+|+++|||||||++|++|+.+.+.. .....++|||+||
T Consensus 5 ~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~---~~~~~~~lil~Pt 81 (460)
T PRK11776 5 AFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV---KRFRVQALVLCPT 81 (460)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh---ccCCceEEEEeCC
Confidence 345555445556889999999999999999999999 999999999999999999999887653 2234579999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.|++++++.+. ++++..++|+...+ .++.....+++|+|+||++|.+++.++.+.+.++++|||||||
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~----~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad 157 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMG----PQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD 157 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChH----HHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH
Confidence 999999999998764 67889999987653 2333344689999999999999999988899999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++.+ ++|...+..++...+. ..+++++|||+.. .+..+... +...|...
T Consensus 158 ~~l~-~g~~~~l~~i~~~~~~--~~q~ll~SAT~~~------------~~~~l~~~----------------~~~~~~~i 206 (460)
T PRK11776 158 RMLD-MGFQDAIDAIIRQAPA--RRQTLLFSATYPE------------GIAAISQR----------------FQRDPVEV 206 (460)
T ss_pred HHhC-cCcHHHHHHHHHhCCc--ccEEEEEEecCcH------------HHHHHHHH----------------hcCCCEEE
Confidence 9997 4787777777776654 3789999999752 22222211 11112111
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+.-.. .
T Consensus 207 ~~~~~~--~----------------------------------------------------------------------- 213 (460)
T PRK11776 207 KVESTH--D----------------------------------------------------------------------- 213 (460)
T ss_pred EECcCC--C-----------------------------------------------------------------------
Confidence 110000 0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+.+
T Consensus 214 ------------------------------------------------------------------------~~~i~~-- 219 (460)
T PRK11776 214 ------------------------------------------------------------------------LPAIEQ-- 219 (460)
T ss_pred ------------------------------------------------------------------------CCCeeE--
Confidence 000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|..+|... ...++||||+++..++.+++.|.. .++.+..+|
T Consensus 220 -------------------~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~----~~~~v~~~h 273 (460)
T PRK11776 220 -------------------RFYEVSPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNA----QGFSALALH 273 (460)
T ss_pred -------------------EEEEeCcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHh----CCCcEEEEe
Confidence 000001123566666666543 346899999999999999999988 688999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
| +|++.+|+.+++.|++|+++|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|+.+
T Consensus 274 g-----~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G 340 (460)
T PRK11776 274 G-----DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340 (460)
T ss_pred C-----CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999774
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.6e-40 Score=416.71 Aligned_cols=334 Identities=20% Similarity=0.253 Sum_probs=250.3
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---cCCCcEEEEEe
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR---QNKKMLAVFLV 358 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~---~~~~~~vL~Lv 358 (1931)
|...+..+...+.+.+.++..|+++|.++++.+++ +|+|+.+|||||||++|++|+.+.+..... .....++|||+
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred HHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 33444444456889999999999999999999999 999999999999999999999887754211 11234799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++||.|+.++++.+. ++++..++|+...+ .++......++|+|+||++|++++.+..+.++++++||||||
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~----~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEa 158 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN----PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEA 158 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHH----HHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecH
Confidence 99999999999998764 67888889887642 234444568999999999999999888889999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|++... .|...++.++...+. ..+++++|||+.. .+..+...+ ...|..
T Consensus 159 h~ll~~-~~~~~i~~il~~l~~--~~q~l~~SAT~~~------------~~~~l~~~~----------------~~~~~~ 207 (456)
T PRK10590 159 DRMLDM-GFIHDIRRVLAKLPA--KRQNLLFSATFSD------------DIKALAEKL----------------LHNPLE 207 (456)
T ss_pred HHHhcc-ccHHHHHHHHHhCCc--cCeEEEEeCCCcH------------HHHHHHHHH----------------cCCCeE
Confidence 999985 666666666665543 3689999999753 222222111 111211
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
..+.......
T Consensus 208 i~~~~~~~~~---------------------------------------------------------------------- 217 (456)
T PRK10590 208 IEVARRNTAS---------------------------------------------------------------------- 217 (456)
T ss_pred EEEecccccc----------------------------------------------------------------------
Confidence 1110000000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
..+..
T Consensus 218 --------------------------------------------------------------------------~~i~~- 222 (456)
T PRK10590 218 --------------------------------------------------------------------------EQVTQ- 222 (456)
T ss_pred --------------------------------------------------------------------------cceeE-
Confidence 00000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.+.......|...|..++.. ....++||||+++..++.|++.|.. .++.+..+
T Consensus 223 --------------------~~~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~~----~g~~~~~l 275 (456)
T PRK10590 223 --------------------HVHFVDKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLNK----DGIRSAAI 275 (456)
T ss_pred --------------------EEEEcCHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHHH----CCCCEEEE
Confidence 00000001122222233322 2356899999999999999999987 67899999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|..+
T Consensus 276 hg-----~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G 343 (456)
T PRK10590 276 HG-----NKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATG 343 (456)
T ss_pred EC-----CCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCe
Confidence 99 999999999999999999999999999999999999999999999999999999999999998763
No 19
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-40 Score=357.69 Aligned_cols=339 Identities=21% Similarity=0.256 Sum_probs=267.0
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
...|.+.+.-+.....+-..||.+|..+|+.|++.+++ +|+|+.+..|+|||.+|.+-+++.+.- ..+...++||+
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~---~~r~tQ~lils 102 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI---SVRETQALILS 102 (400)
T ss_pred ccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc---ccceeeEEEec
Confidence 45566777766677888899999999999999999999 999999999999999888765544332 23346899999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|||+|+.|+.+++... +++++..+.|+.+... ..+..-.+.+||.+||+++++++.++.+.-..+.+||+|||
T Consensus 103 PTRELa~Qi~~vi~alg~~mnvq~hacigg~n~ge----dikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 103 PTRELAVQIQKVILALGDYMNVQCHACIGGKNLGE----DIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEA 178 (400)
T ss_pred ChHHHHHHHHHHHHHhcccccceEEEEecCCccch----hhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccH
Confidence 9999999999998874 4788888888887543 22233368999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|.+++. +|...+-.+|...|.. .+++++|||... ++.+ ...++.+.|..
T Consensus 179 DemL~k-gfk~Qiydiyr~lp~~--~Qvv~~SATlp~------------eile----------------mt~kfmtdpvr 227 (400)
T KOG0328|consen 179 DEMLNK-GFKEQIYDIYRYLPPG--AQVVLVSATLPH------------EILE----------------MTEKFMTDPVR 227 (400)
T ss_pred HHHHHh-hHHHHHHHHHHhCCCC--ceEEEEeccCcH------------HHHH----------------HHHHhcCCcee
Confidence 999997 8988888888887654 799999999652 2222 23355666655
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
..+.-+.... +-|+++
T Consensus 228 ilvkrdeltl-----EgIKqf----------------------------------------------------------- 243 (400)
T KOG0328|consen 228 ILVKRDELTL-----EGIKQF----------------------------------------------------------- 243 (400)
T ss_pred EEEecCCCch-----hhhhhh-----------------------------------------------------------
Confidence 5443221100 000000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
....+
T Consensus 244 ----------------~v~ve----------------------------------------------------------- 248 (400)
T KOG0328|consen 244 ----------------FVAVE----------------------------------------------------------- 248 (400)
T ss_pred ----------------eeeec-----------------------------------------------------------
Confidence 00000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
...=|+..|.++.... .-.++||||+++..+++|.+.+++ ..+.+.++
T Consensus 249 -------------------------~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~----~nftVssm 296 (400)
T KOG0328|consen 249 -------------------------KEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSM 296 (400)
T ss_pred -------------------------hhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHh----hCceeeec
Confidence 0001444444444332 346899999999999999999998 68999999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
|| +|.+++|.+++.+||+|+.+|||+|||-+||||+|.|++|||||+|.+...||||+||.||.|.+++.+-
T Consensus 297 HG-----Dm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvain 368 (400)
T KOG0328|consen 297 HG-----DMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 368 (400)
T ss_pred cC-----CcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999966553
No 20
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=384.58 Aligned_cols=327 Identities=20% Similarity=0.258 Sum_probs=259.3
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh-hcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ-RQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~-~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
....|....|..++.+|+.+|+.++. +++|.++.||||||++|+.|+++.+-+.. ....+--+|||.|||+|+.|+.+
T Consensus 80 t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFe 159 (758)
T KOG0343|consen 80 TLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFE 159 (758)
T ss_pred HHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHH
Confidence 44889999999999999999999999 99999999999999999999987765442 23455669999999999999999
Q ss_pred HHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCCcHH
Q 000174 370 VIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 370 ~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
++.+ +.++..+++.||..+.. -...+...+|+|||||+|+.++... .+.-.++.+||+||||+|++ |+|.
T Consensus 160 vL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD-MGFk 233 (758)
T KOG0343|consen 160 VLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD-MGFK 233 (758)
T ss_pred HHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH-HhHH
Confidence 9987 45789999999976532 1223468999999999999999774 57889999999999999999 7999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
..+..++...|.. .+.|++|||+.. .+..|..+ .+..|..+.+. .....
T Consensus 234 ~tL~~Ii~~lP~~--RQTLLFSATqt~------------svkdLaRL----------------sL~dP~~vsvh-e~a~~ 282 (758)
T KOG0343|consen 234 KTLNAIIENLPKK--RQTLLFSATQTK------------SVKDLARL----------------SLKDPVYVSVH-ENAVA 282 (758)
T ss_pred HHHHHHHHhCChh--heeeeeecccch------------hHHHHHHh----------------hcCCCcEEEEe-ccccc
Confidence 9999999988764 789999999874 11122111 01222222111 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
.. ...
T Consensus 283 at--------------------------------------------------------------------P~~------- 287 (758)
T KOG0343|consen 283 AT--------------------------------------------------------------------PSN------- 287 (758)
T ss_pred cC--------------------------------------------------------------------hhh-------
Confidence 00 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
T Consensus 288 -------------------------------------------------------------------------------- 287 (758)
T KOG0343|consen 288 -------------------------------------------------------------------------------- 287 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
+.+.+.......|+..|...++.+ ...|+|||+.+...+.++++.+..+. +|++...+|| .|+
T Consensus 288 -------L~Q~y~~v~l~~Ki~~L~sFI~sh---lk~K~iVF~SscKqvkf~~e~F~rlr--pg~~l~~L~G-----~~~ 350 (758)
T KOG0343|consen 288 -------LQQSYVIVPLEDKIDMLWSFIKSH---LKKKSIVFLSSCKQVKFLYEAFCRLR--PGIPLLALHG-----TMS 350 (758)
T ss_pred -------hhheEEEEehhhHHHHHHHHHHhc---cccceEEEEehhhHHHHHHHHHHhcC--CCCceeeecc-----chh
Confidence 000000112345777777777664 46799999999999999999999874 7899999999 999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 766 TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|..|.++..+|-....-||+||||++||||+|.||+||+||.|.++.+||||+||++|.+..
T Consensus 351 Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~ 412 (758)
T KOG0343|consen 351 QKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKER 412 (758)
T ss_pred HHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999996544
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-40 Score=391.55 Aligned_cols=333 Identities=20% Similarity=0.248 Sum_probs=260.6
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-------cCCCcEEEEEeCChhHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-------QNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-------~~~~~~vL~LvPT~~Lv~ 365 (1931)
.+++..++..|+|||+.+++.+.. ++.++||+||||||.+|++||...+..... ....++++||+||++||.
T Consensus 87 ~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~ 166 (482)
T KOG0335|consen 87 GNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVD 166 (482)
T ss_pred hccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhh
Confidence 678889999999999999999999 999999999999999999999877765421 112478999999999999
Q ss_pred HHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 366 QQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 366 Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
|++++.+++. +.++...+|+.... .+......+++|+|+||++|.+.++.+.+.|.++.++|||||++|++.+
T Consensus 167 Qi~nea~k~~~~s~~~~~~~ygg~~~~----~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~m 242 (482)
T KOG0335|consen 167 QIYNEARKFSYLSGMKSVVVYGGTDLG----AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEM 242 (482)
T ss_pred HHHHHHHhhcccccceeeeeeCCcchh----hhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhc
Confidence 9999999975 57788888885543 3334455799999999999999999999999999999999999999989
Q ss_pred cHHHHHHHHHhhcCC--CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh--cCCeEEEecchHHHhhhCCCCceeEE
Q 000174 443 PYSLVMSEFYHTTSK--EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESK--LDSVVCTIKDRKELEKHVPMPSEVVV 518 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~--~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~--l~~~i~t~~~~~~l~~~~~~p~e~~~ 518 (1931)
+|...|+.+...... ....+.+++|||-.. .+..+-.. .+..+. +
T Consensus 243 gF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~------------~iq~l~~~fl~~~yi~-------------------l 291 (482)
T KOG0335|consen 243 GFEPQIRKIVEQLGMPPKNNRQTLLFSATFPK------------EIQRLAADFLKDNYIF-------------------L 291 (482)
T ss_pred cccccHHHHhcccCCCCccceeEEEEeccCCh------------hhhhhHHHHhhccceE-------------------E
Confidence 999999998876533 345788999999331 11111110 000000 0
Q ss_pred EeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 000174 519 EYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE 598 (1931)
Q Consensus 519 ~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~ 598 (1931)
....
T Consensus 292 aV~r---------------------------------------------------------------------------- 295 (482)
T KOG0335|consen 292 AVGR---------------------------------------------------------------------------- 295 (482)
T ss_pred EEee----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccc
Q 000174 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELL 678 (1931)
Q Consensus 599 lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~ 678 (1931)
.|
T Consensus 296 vg------------------------------------------------------------------------------ 297 (482)
T KOG0335|consen 296 VG------------------------------------------------------------------------------ 297 (482)
T ss_pred ec------------------------------------------------------------------------------
Confidence 00
Q ss_pred ccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCC-C-----CceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHT-E-----DFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 679 ~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~-~-----~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
...+.+.+.+.......|...|+++|...... . ..+++|||+++..|..|+.+|.. .++++
T Consensus 298 ---------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~----~~~~~ 364 (482)
T KOG0335|consen 298 ---------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS----NGYPA 364 (482)
T ss_pred ---------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc----CCCCc
Confidence 00000111111223356777777777654211 2 24899999999999999999998 78999
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEE
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YIL 830 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~iv 830 (1931)
..||| +.++.+|.++|+.|++|.+.+||||+|++||||||+|.+||+||+|.+..+|+||+|||||.|.. .+.
T Consensus 365 ~sIhg-----~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 365 KSIHG-----DRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred eeecc-----hhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999977 444
Q ss_pred EEe
Q 000174 831 MIE 833 (1931)
Q Consensus 831 lv~ 833 (1931)
|+.
T Consensus 440 f~n 442 (482)
T KOG0335|consen 440 FFN 442 (482)
T ss_pred Eec
Confidence 554
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.9e-39 Score=421.15 Aligned_cols=333 Identities=22% Similarity=0.284 Sum_probs=256.5
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|.+.+..+...+++.+++|.+|+|+|.++++.+++ +|+|+.++||||||++|++|+.+.+.. ....+++||||||
T Consensus 7 ~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~---~~~~~~~LIL~PT 83 (629)
T PRK11634 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP---ELKAPQILVLAPT 83 (629)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh---ccCCCeEEEEeCc
Confidence 345555444566899999999999999999999999 999999999999999999998877653 2345689999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.|+++++..+. ++.+..++|+...+. +......+++|||+||++|++++.++.+.++++.+|||||||
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~----q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDV----QLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHH----HHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 999999999988764 688888899865432 222333579999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
+++. +.|...+..++...+. ..+++++|||... .+..+.. .+...|..+
T Consensus 160 ~ml~-~gf~~di~~Il~~lp~--~~q~llfSAT~p~------------~i~~i~~----------------~~l~~~~~i 208 (629)
T PRK11634 160 EMLR-MGFIEDVETIMAQIPE--GHQTALFSATMPE------------AIRRITR----------------RFMKEPQEV 208 (629)
T ss_pred HHhh-cccHHHHHHHHHhCCC--CCeEEEEEccCCh------------hHHHHHH----------------HHcCCCeEE
Confidence 9987 4777777777766554 3788999999642 1111111 112222211
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+......
T Consensus 209 ~i~~~~~~------------------------------------------------------------------------ 216 (629)
T PRK11634 209 RIQSSVTT------------------------------------------------------------------------ 216 (629)
T ss_pred EccCcccc------------------------------------------------------------------------
Confidence 11000000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+..
T Consensus 217 ------------------------------------------------------------------------~~~i~q-- 222 (629)
T PRK11634 217 ------------------------------------------------------------------------RPDISQ-- 222 (629)
T ss_pred ------------------------------------------------------------------------CCceEE--
Confidence 000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|..+|... ...++||||+++..+..|++.|.. .++.+..+|
T Consensus 223 -------------------~~~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~----~g~~~~~lh 276 (629)
T PRK11634 223 -------------------SYWTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER----NGYNSAALN 276 (629)
T ss_pred -------------------EEEEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh----CCCCEEEee
Confidence 000001124666677776543 346899999999999999999988 678999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
| +|++.+|++++++|++|+++|||||+|+++|||+|+|++||+||+|.++.+|+||+|||||.|..+.
T Consensus 277 g-----d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 277 G-----DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred C-----CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce
Confidence 9 9999999999999999999999999999999999999999999999999999999999999998633
No 23
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=3.6e-41 Score=376.57 Aligned_cols=215 Identities=37% Similarity=0.500 Sum_probs=194.2
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSS--GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNE 1668 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~ 1668 (1931)
.+..|++.|||+|+|+.||.+||||+||.+. ...+||||||||||||+++|++|||++||++++|.||.+|+.+||++
T Consensus 7 ~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~ 86 (235)
T COG0571 7 KLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEE 86 (235)
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999754 45799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEe
Q 000174 1669 NFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQ 1748 (1931)
Q Consensus 1669 ~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~ 1748 (1931)
+|+.+|..+||++||+.++++.. .++...+++++|+|||+|||||+|+|++ .+++
T Consensus 87 ~La~ia~~l~l~~~l~lg~ge~~-----------------------~gg~~~~silaD~~EAligAiylD~g~~--~~~~ 141 (235)
T COG0571 87 SLAEIARELGLGDYLRLGKGEEK-----------------------SGGRRRESILADAFEALIGAIYLDSGLE--AARK 141 (235)
T ss_pred HHHHHHHHhCccchhhccCChhh-----------------------cCCCCchhHHHHHHHHHHHHHHHhCChH--HHHH
Confidence 99999999999999999999864 3567889999999999999999999944 6778
Q ss_pred eeccCCCCCCCCC---CCCCCChHHHHHHHHhhcCC-ceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHH
Q 000174 1749 VFQPLLDPMVTPE---TLPMHPVRELQERCQQQAEG-LEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLA 1819 (1931)
Q Consensus 1749 ~~~~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~-~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~A 1819 (1931)
|+.+++.+.+... ...++|++.||||+|+++.. |.|++... | +.|++.|.|+|..+++|.|.|||+|++.|
T Consensus 142 ~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~A 221 (235)
T COG0571 142 FILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAA 221 (235)
T ss_pred HHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHH
Confidence 8999998876642 23489999999999998876 49997654 4 47999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 000174 1820 ARNALAVLKEK 1830 (1931)
Q Consensus 1820 A~~AL~~L~~~ 1830 (1931)
|+.||..|...
T Consensus 222 A~~al~~l~~~ 232 (235)
T COG0571 222 AEQALKKLGVK 232 (235)
T ss_pred HHHHHHHhccc
Confidence 99999998754
No 24
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=100.00 E-value=8.8e-42 Score=453.28 Aligned_cols=1068 Identities=24% Similarity=0.302 Sum_probs=589.7
Q ss_pred HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHH
Q 000174 374 QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFY 452 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~ 452 (1931)
.....+.-.++......|....|...+...++.+.|+..+++++..+++.+....++++||||++... +++...|....
T Consensus 10 ~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (1606)
T KOG0701|consen 10 HTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRHFMDLSS 89 (1606)
T ss_pred ccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchhhhhccc
Confidence 34455555566666666765588888899999999999999999999999999999999999999975 66666665444
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
. .+....|+++|+||.+.+.+. ..+.....+..++......+.+..+...+.++...|.++++..-..
T Consensus 90 ~-~~~~s~pr~~~~~a~~~~~~~--~~~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~--------- 157 (1606)
T KOG0701|consen 90 S-GPSFSVPRILGLTASLLNDKF--WLEELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDA--------- 157 (1606)
T ss_pred c-cCCCCcchhhhccCCCcCCCc--chhhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhh---------
Confidence 3 333567999999999887543 4455667788888888888888877777778888888887654110
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
.+.+... ....++- ....+... -.-.+........+...|+||..+++....
T Consensus 158 ------~~~~~~~-----~~~~~~~--------------~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 209 (1606)
T KOG0701|consen 158 ------EYGPLLI-----NKDKLIC--------------VFLIPDCI---VITFQKQYTLLKVLFKKGPWCSVKWIAQDV 209 (1606)
T ss_pred ------hhhhhhc-----cccceeE--------------EeccCcce---eeeccccchhhhhhcccCcchhhHHHHHHH
Confidence 0111100 0000000 00000000 000011111222345678888877776555
Q ss_pred HHhhhhhhhhhh----hhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 613 TALQNDERANYQ----LDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 613 ~~l~~~~~~~~~----~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
..+..-...... ....|...-++.....-. ....+.- ..++.....+.. . ......
T Consensus 210 ~e~~~~~~~~~~~~~~~~e~f~~~~~~~~~~~~~-~~~~~~~----------------~~~~~~~~~e~~--~-~~~~~~ 269 (1606)
T KOG0701|consen 210 RELPKVIAGNPAELHYCEEVFSDSELRFLMSIPR-LLERLRD----------------SKHEYIHQFEVL--R-KYEPHD 269 (1606)
T ss_pred hhcceeecCCHHHhhhhhhhcCcHHHHHHHhHHH-HHHHhhh----------------cchhhhccccee--e-eecccc
Confidence 544321111000 000010000000000000 0000000 000000000000 0 000000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCc------
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ------ 762 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~------ 762 (1931)
...++. . .....-.|. .|.+ .....+||||+.+.++..+.+++++. ....+..+.|.....
T Consensus 270 ~~~l~~-~-~~~~~v~k~-----~l~~---~~~l~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~k~~~ 336 (1606)
T KOG0701|consen 270 VFRLIH-E-SVCPLVDKE-----YLEK---IETLSGIIFVDQRYTAYVLLELLREI---FSNDPLFVTGASGANLWKSFK 336 (1606)
T ss_pred cceeeh-h-hcCchhhHH-----HHHh---hhhhhheeecccchHHHHHHHHHHHh---hccCcceeeccccCccchhhH
Confidence 000010 0 000000111 2222 23467999999999999999999885 334556677743221
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEecCChhHHHH
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIERGNLSHATF 842 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~ 842 (1931)
......|.+++..|+..++|+|++|++++||+|++.|+.||.+|.|.....|+|+.||+++.++.++++..+.+. ..
T Consensus 337 ~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~---~~ 413 (1606)
T KOG0701|consen 337 NELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSA---VS 413 (1606)
T ss_pred HHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhh---hh
Confidence 112345889999999999999999999999999999999999999999999999999999999998887654331 11
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCccceeCCCCcEEcccchHHHHHHHhhcCCCCCCCccCceEEE
Q 000174 843 LRNARNSEETLRKEAIERTDLSHLKDTSRLISVDAVPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIM 922 (1931)
Q Consensus 843 l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~~~~~~~~y~v~~tgA~lt~~~Ai~ll~~yC~~Lp~d~~~~~~P~~~~ 922 (1931)
+.. -... ....+.+. .+ +.....+ ++.||+..-.
T Consensus 414 ~~~--~s~~--~~~~i~~~---------~l----------~~~~~~~-----------v~~~~~~~e~------------ 447 (1606)
T KOG0701|consen 414 LKN--PSYA--YTEQIPRP---------QL----------FLRLDAN-----------VNKYCARAEL------------ 447 (1606)
T ss_pred hcC--hhHh--HHhhcccc---------hh----------hcccccc-----------hHHHHHHHHh------------
Confidence 111 0000 00111110 00 1111111 7889984311
Q ss_pred EecCCCCCCceEEEEEEcCCCCCCC-cccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCcc---cccccCC
Q 000174 923 ERHEKPGGPTEYSCKLQLPCNAPFE-KLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEQ---QEKVDQN 998 (1931)
Q Consensus 923 ~~~~~~~~~~~~~~~v~LP~~~p~~-~~~g~~~~sk~~Akr~AAf~Ac~~L~~~G~ldd~L~P~~~~~~~---~~~~~~~ 998 (1931)
.....+..+|.||.++|.+ .+.| +|.+||++|++||+|+|.+..... ....++.
T Consensus 448 ------~~~~~~~~~v~~~~~~p~~~~~~~----------------~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ 505 (1606)
T KOG0701|consen 448 ------LKHVPFLSTVVLPVNSPLKMCIVG----------------LCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEE 505 (1606)
T ss_pred ------ccCCCcceeEEEecCchHHHHHHH----------------hHHHHHHhhhhhhhhcccccchHHhhhhhccccc
Confidence 1123566789999998865 2333 999999999999999996543311 1111222
Q ss_pred cC----CCCCCCCccccccccccccccccccccccCCCCCCCCcceeEEEEEeeecC-------C---------------
Q 000174 999 DE----GEPLPGTARHREFYPEGVADILQGEWILSGRDGCTGSKLFHLFMYTVKCVN-------N--------------- 1052 (1931)
Q Consensus 999 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~y~~~i~~~~-------~--------------- 1052 (1931)
++ -++.+++++++++|.+.++.....+.... ...+|.|.+...- .
T Consensus 506 ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~---------~~~c~~~~~~~~~~~~~~e~~n~~~r~~~~~~~~~~ 576 (1606)
T KOG0701|consen 506 EEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKA---------DQPCYLYVIGLELTMPLPEERNFERRKLYPPEDLTY 576 (1606)
T ss_pred hhhccccCCCCCcccccccccchhHHHhcccccCC---------CCceeeeeeccceecCCchhcccccccccCchhhhh
Confidence 22 24678999999999987765554443322 2356666543221 0
Q ss_pred --CCCCCCccccccceeEeeccc---------------chHHHHHHHHHHHHHHHhhhccccCCCCCCCCC---CceEEE
Q 000174 1053 --GISKDPFLTQVSDFAVLFSSE---------------LDAELASLKNFHVRLMSIVLDVDVEPYTTPWDP---AKAYLF 1112 (1931)
Q Consensus 1053 --~~~~~~~~~~~~~~~l~~~~~---------------l~~~~~~l~~f~~~~~~~v~~~~~~~~~~~~~~---~~~yl~ 1112 (1931)
|..+-..+++.+.|++++... .++.+.....|+.++|..++... .....+++ ...+.+
T Consensus 577 ~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~--~~~~~~~~~~~~l~~~l 654 (1606)
T KOG0701|consen 577 CFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLA--KINLEFDPKTAELIETL 654 (1606)
T ss_pred hhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhh--ccccccCCchhhHHHHh
Confidence 000001134455555554210 01123445568888887766521 11111222 234677
Q ss_pred EecccCCCCCCCCccchhhHhhhhccCCCCCccccCCCCcccCccccccCCCcccccccccccccccCccCCCCcccccc
Q 000174 1113 VPVVSDKSVDPMNELDWDLVEKITKTDAWTNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGA 1192 (1931)
Q Consensus 1113 ~P~~~~~~~~~~~~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 (1931)
+|.+.... .-...|+|..|+.++.......+
T Consensus 655 lp~~~~~~-~~~~~i~~k~l~~iv~~~~~~~~------------------------------------------------ 685 (1606)
T KOG0701|consen 655 LPLNVLAD-KRAIIIVRKFLEAIVAPSDLMPI------------------------------------------------ 685 (1606)
T ss_pred cccccccc-cchhhhHHHHHHHHhCcccccCC------------------------------------------------
Confidence 88653321 11246888888876543211000
Q ss_pred cchhhhhhccCCCCchhhhhhcccCCCccccccccccCCccccCCcEEEcccCC---CeEEEEeeccCCCCCCCCCCCCC
Q 000174 1193 IAQFDVVKASGLVPDREAMQIHNADMPTGKLMMADSCANAGDLEGRIVTAAHSG---KRFYVESIRYEMTAESSFPRKEG 1269 (1931)
Q Consensus 1193 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vv~~~~~~---~~y~v~~v~~dltp~s~fp~~~g 1269 (1931)
|..+-.. + -.++..+++.+++++ |.+ ..||+..|.....|.|.||..
T Consensus 686 -------------~~~~~~~---------~----~~~f~~~~~~~~~~~--~rn~~~~~~~~~~v~~~~~pss~~~g~-- 735 (1606)
T KOG0701|consen 686 -------------PSKDEVR---------K----AKYFDGEDSQDAVGM--YRNDDQPQFYVAEVLPLLAPSSLFPGL-- 735 (1606)
T ss_pred -------------CChhhhh---------h----hhhcccccchhhhhh--hhcccccceeeeeeeeeccchhcCCCc--
Confidence 0000000 0 001233444555555 322 246899999999999999966
Q ss_pred CCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCCCccccccccccc--cc--cccccceEEEcCCcccccc
Q 000174 1270 YLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSEEQEGE--GE--EILDKTYYVFLPPELCFIH 1345 (1931)
Q Consensus 1270 ~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~~~~~~~~~~~~~--~~--~~~~k~~~~~L~Pelc~v~ 1345 (1931)
.|.++..||..+|...+....||++.++..+.+.|++.|+.....+.... +. +..... .+ -.--.++
T Consensus 736 -----~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~e---s~-~~~~~~h 806 (1606)
T KOG0701|consen 736 -----DYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDE---SL-EHSLIIH 806 (1606)
T ss_pred -----chheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHH---Hh-hccCCCC
Confidence 68899999999999999999999999999999999999987654332210 00 000000 00 0112278
Q ss_pred cCChHHHHHhhchhhHHHHHHHHHHHHHHhhhcCCC-CChh--HHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHH
Q 000174 1346 PLPGSLVRGAQRLPSIMRRVESMLLAIQLKDKINYP-VPAS--KIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFL 1421 (1931)
Q Consensus 1346 ~lp~~~~~~~~~lPsi~~rl~~~l~a~~l~~~l~~~-~~~~--~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l 1421 (1931)
+.+++.|+.+.++|.+++|++ +.+..++...-+. ++.. .++ .++-..+.....|+. .|....++
T Consensus 807 ~~~~s~~~~~~~~p~~v~~v~--~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~----------~~~~~~~~ 874 (1606)
T KOG0701|consen 807 PALASLWRRAVCLPEILYRVL--LTGALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKD----------EYSCDLAL 874 (1606)
T ss_pred cCcchhhhhhccCcchheeec--cccceeeeecccchhhhhhhhccchhhccccccCCCCcc----------ccceeecc
Confidence 999999999999999999983 2233322221111 0000 011 111111111111111 01111111
Q ss_pred HHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhccc
Q 000174 1422 FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKL 1501 (1931)
Q Consensus 1422 ~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1501 (1931)
=... ..+....+.=+-..+.+.|+. |.+.+.-.. . |. +
T Consensus 875 ~~~~------~~~~~~~~~~~~~~~~q~av~--l~~~~~~~~--~------~~---------~----------------- 912 (1606)
T KOG0701|consen 875 PKEN------PVKQVLGKANQLDKVNQQAVE--LQECIQLHE--V------GA---------L----------------- 912 (1606)
T ss_pred cCCC------chhhhhchhhhhhHHHhhhhh--hhhhhhhhc--c------cc---------c-----------------
Confidence 1111 112222222222333333332 111111000 0 00 0
Q ss_pred CCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHhhheeeccCH-----------HHHHHHHhHhhccccCCC
Q 000174 1502 GTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGK-----------DAANHLMKWIGIQVESDP 1570 (1931)
Q Consensus 1502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~-----------~~a~~~~~~l~i~~~~~~ 1570 (1931)
.-+.+.+|..++-++|--+-+++..-. .-+..+...++ +
T Consensus 913 ------------------------~d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~------~ 962 (1606)
T KOG0701|consen 913 ------------------------DDHLVFNKGVADQVLAKRESISLATRPELVSPFIPEPPTTSHLISNRLS------P 962 (1606)
T ss_pred ------------------------ccccccCccccchhhhhccccccccCcccccccccCCchhhhhhhhhcC------c
Confidence 001122333333333322212111111 00000000100 0
Q ss_pred CcCCCCCCCCCCCcccc--chhhHHHHHHHcC--CCcCCH--------HHHHHHhcCCCCCCCCCCCchhHHHHHHHHHH
Q 000174 1571 EEVGCPSRPACVPESVL--RSVDFHALEDALK--IKFKDR--------GLLVEAITHASRPSSGVSCYQRLEFVGDAVLD 1638 (1931)
Q Consensus 1571 ~~~~~~~~~~~~p~~~~--~~~~~~~le~~lg--y~F~~~--------~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd 1638 (1931)
. .... ..+.+.. ...+.+.+|+++. |.|.++ .+|.+||||+++. ...+|||||+|||++|.
T Consensus 963 ~----~~~~-~~~~s~~~~~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~--~s~s~Erle~Lgds~Lk 1035 (1606)
T KOG0701|consen 963 S----SPSN-SDLNSLLPNKRSDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQ--DSFSLERLELLGDSLLK 1035 (1606)
T ss_pred c----CCCC-CCcccccccccccccccccccccceeccccccccccchhHHHHHhhcCccc--cchhHHHHHhhHHHHHH
Confidence 0 0000 0001111 1234688999999 999999 9999999999986 44799999999999999
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccC--Cch---------------------------
Q 000174 1639 HLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG--SSA--------------------------- 1689 (1931)
Q Consensus 1639 ~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~--~~~--------------------------- 1689 (1931)
+.+++|||.+||+..||+|+.+|+.+++|+.|+.+|+..||..+++++ -+.
T Consensus 1036 ~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~ 1115 (1606)
T KOG0701|consen 1036 LAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILY 1115 (1606)
T ss_pred HHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999987 222
Q ss_pred --hHHHHHHHHHHHHHhhcCCCCCCCCC--CCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCCCC----C
Q 000174 1690 --LDRQIRDFVKEVLEELLKPGFNSFGL--GDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP----E 1761 (1931)
Q Consensus 1690 --~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i~~----~ 1761 (1931)
....+..|........ +...... .....||.++|++||++||+|+|.|+...... +...+|+..+.. .
T Consensus 1116 ~e~~e~~~df~e~~~~~~---~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~-~~~~~lk~~~~~~dy~~ 1191 (1606)
T KOG0701|consen 1116 KELDEKIKDFQEAMEKED---GDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFET-IGDSFLKWSITNYDYDT 1191 (1606)
T ss_pred cchhhhhhHHHHhhhccC---CcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhH-HHHHHHhhhhhhhhhhc
Confidence 2233333333222111 1111111 25678999999999999999999998765311 234444433221 1
Q ss_pred CCCCCChHHHHHHHHhhc
Q 000174 1762 TLPMHPVRELQERCQQQA 1779 (1931)
Q Consensus 1762 ~~~~~P~~~L~e~~~~~~ 1779 (1931)
..++++.-.+.-++....
T Consensus 1192 ~e~~~~~~~~~~~s~~~~ 1209 (1606)
T KOG0701|consen 1192 LEPKHAGKLSFRRSKIVK 1209 (1606)
T ss_pred ccccchhhhhhhhhhHhh
Confidence 234566655555554433
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=384.54 Aligned_cols=380 Identities=19% Similarity=0.216 Sum_probs=261.6
Q ss_pred ccccCCCCcchhhh-hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---cCCCcEEEEE
Q 000174 283 QECNGKVGKKSEAK-EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR---QNKKMLAVFL 357 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l-~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~---~~~~~~vL~L 357 (1931)
+.+.+.-+.....+ .++.+..||.+|+++||.+++ +|++|.++||||||++|++||.+.++.+.. ...+..+|||
T Consensus 138 f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVi 217 (708)
T KOG0348|consen 138 FASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVI 217 (708)
T ss_pred chhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEE
Confidence 33444443333333 347899999999999999999 999999999999999999999999887653 3557889999
Q ss_pred eCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeCCC
Q 000174 358 VPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDECH 436 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEaH 436 (1931)
||||+||.|.++.++++..--.+++-|..-..+.++.+..++.++++|+|+|||+|+|+|.+ ..+.+.++.+|||||||
T Consensus 218 vPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD 297 (708)
T KOG0348|consen 218 VPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD 297 (708)
T ss_pred echHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh
Confidence 99999999999999998754444444443334445667777889999999999999999988 56889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCC--------CC---CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh-cCCeEEEecchH
Q 000174 437 HAVKKHPYSLVMSEFYHTTSK--------EK---RPSVFGMTASPVNLKGVSSQVDCAIKICNLESK-LDSVVCTIKDRK 504 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~--------~~---~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~-l~~~i~t~~~~~ 504 (1931)
++++ .+|.+.+..++..... .. +.+.++||||... .+..|... |+..++.-
T Consensus 298 rlle-LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd------------~V~rLa~~sLkDpv~I~---- 360 (708)
T KOG0348|consen 298 RLLE-LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTD------------GVNRLADLSLKDPVYIS---- 360 (708)
T ss_pred HHHh-ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHH------------HHHHHhhccccCceeee----
Confidence 9998 5888887777765411 01 1356899999653 22223221 22111111
Q ss_pred HHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHH
Q 000174 505 ELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAAN 584 (1931)
Q Consensus 505 ~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~ 584 (1931)
.+... ..+..-...+.+. .
T Consensus 361 ---------------ld~s~------~~~~p~~~a~~ev---------------------------~------------- 379 (708)
T KOG0348|consen 361 ---------------LDKSH------SQLNPKDKAVQEV---------------------------D------------- 379 (708)
T ss_pred ---------------ccchh------hhcCcchhhhhhc---------------------------C-------------
Confidence 11100 0000000000000 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 000174 585 LIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGF 664 (1931)
Q Consensus 585 l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 664 (1931)
-++. +.. + .
T Consensus 380 --------------~~~~-~~~------------------l--------------------------------------~ 388 (708)
T KOG0348|consen 380 --------------DGPA-GDK------------------L--------------------------------------D 388 (708)
T ss_pred --------------Cccc-ccc------------------c--------------------------------------c
Confidence 0000 000 0 0
Q ss_pred ccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhc
Q 000174 665 VEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAE 743 (1931)
Q Consensus 665 ~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~ 743 (1931)
.-...+.|.+.+. .....-++..|..+|... ......|+|||..+.+.+++.+.+|..
T Consensus 389 ~~~iPeqL~qry~---------------------vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 389 SFAIPEQLLQRYT---------------------VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred cccCcHHhhhceE---------------------ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHh
Confidence 0000111111111 001122444555555543 334556999999999999999998875
Q ss_pred C------------------CCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEc
Q 000174 744 L------------------PSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRF 805 (1931)
Q Consensus 744 ~------------------~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~f 805 (1931)
. +.+.+.++..+|| +|+|.+|..+++.|+..+-.||+||||++||||+|+|.+||.|
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG-----sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQY 522 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG-----SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQY 522 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecC-----chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEe
Confidence 2 0113467889999 9999999999999998888899999999999999999999999
Q ss_pred CCCCCHHHHHHhhccCCCCCCc--EEEEEecCCh
Q 000174 806 DLAKTVLAYIQSRGRARKPGSD--YILMIERGNL 837 (1931)
Q Consensus 806 D~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~~ 837 (1931)
|+|.++.+|+||+||++|+|.+ .++|+.+.+.
T Consensus 523 d~P~s~adylHRvGRTARaG~kG~alLfL~P~Ea 556 (708)
T KOG0348|consen 523 DPPFSTADYLHRVGRTARAGEKGEALLFLLPSEA 556 (708)
T ss_pred CCCCCHHHHHHHhhhhhhccCCCceEEEecccHH
Confidence 9999999999999999999877 5666665543
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-39 Score=419.31 Aligned_cols=338 Identities=18% Similarity=0.226 Sum_probs=255.8
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAVF 356 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL~ 356 (1931)
.|.+.+..+...+.+.+.++..|+|+|.++|+.+++ +|+|+.++||||||++|++|+.+.+..... .....++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 355555555566899999999999999999999999 999999999999999999998876643211 112468999
Q ss_pred EeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEE
Q 000174 357 LVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLIL 432 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~ 432 (1931)
|+||++|+.|+++.+..+. ++++..++|+...+. .......+++|+|+||++|++++... .+.+..+++|||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~----q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDK----QRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH----HHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 9999999999999988764 688999999875432 11222357899999999999998764 578899999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPM 512 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~ 512 (1931)
||||++.+. .|...+..++...+.....+++++|||... .+..+.. .++..
T Consensus 166 DEAh~lld~-gf~~~i~~il~~lp~~~~~q~ll~SATl~~------------~v~~l~~----------------~~l~~ 216 (572)
T PRK04537 166 DEADRMFDL-GFIKDIRFLLRRMPERGTRQTLLFSATLSH------------RVLELAY----------------EHMNE 216 (572)
T ss_pred cCHHHHhhc-chHHHHHHHHHhcccccCceEEEEeCCccH------------HHHHHHH----------------HHhcC
Confidence 999999874 787777777776665445789999999652 1111110 11111
Q ss_pred CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH
Q 000174 513 PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592 (1931)
Q Consensus 513 p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~ 592 (1931)
|....+......
T Consensus 217 p~~i~v~~~~~~-------------------------------------------------------------------- 228 (572)
T PRK04537 217 PEKLVVETETIT-------------------------------------------------------------------- 228 (572)
T ss_pred CcEEEecccccc--------------------------------------------------------------------
Confidence 111111000000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccc
Q 000174 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEI 672 (1931)
Q Consensus 593 ~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 672 (1931)
...+
T Consensus 229 ----------------------------------------------------------------------------~~~i 232 (572)
T PRK04537 229 ----------------------------------------------------------------------------AARV 232 (572)
T ss_pred ----------------------------------------------------------------------------ccce
Confidence 0000
Q ss_pred ccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 673 EEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 673 ~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
. +.+.......|+..|+.+|.. ....++||||+++..++.|++.|.. .++.+
T Consensus 233 ~---------------------q~~~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~----~g~~v 284 (572)
T PRK04537 233 R---------------------QRIYFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLER----HGYRV 284 (572)
T ss_pred e---------------------EEEEecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHH----cCCCE
Confidence 0 000000112355556666543 3467899999999999999999988 57899
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
..+|| +|++.+|++++++|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|..+.
T Consensus 285 ~~lhg-----~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ 356 (572)
T PRK04537 285 GVLSG-----DVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGD 356 (572)
T ss_pred EEEeC-----CCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCce
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999998743
No 27
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=6.4e-41 Score=381.46 Aligned_cols=215 Identities=28% Similarity=0.358 Sum_probs=187.3
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
..+..||++|||+|+|+.||.+||||+||......+||||||||||||+++|++|||.+||++++|.||.+|+.+|||++
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~ 89 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAET 89 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHH
Confidence 45788999999999999999999999999765456999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEee
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~ 1749 (1931)
||.+|.++||++||+.++.... .+....+|++||+|||+|||||+|+|++ .+++|
T Consensus 90 La~ia~~lgL~~~i~~~~~~~~-----------------------~~~~~~~~ilad~~EAliGAiylD~G~~--~a~~~ 144 (235)
T PRK12371 90 CAAIADEIGLHDLIRTGSDVKK-----------------------LTGKRLLNVRADVVEALIAAIYLDGGLE--AARPF 144 (235)
T ss_pred HHHHHHHCCcHHHhccCcchhh-----------------------cCCcccchHHHHHHHHHHHHHHHcCCHH--HHHHH
Confidence 9999999999999998765421 1233557999999999999999999976 56678
Q ss_pred eccCCCCCCCC-CCCCCCChHHHHHHHHhhcC-CceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHH
Q 000174 1750 FQPLLDPMVTP-ETLPMHPVRELQERCQQQAE-GLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822 (1931)
Q Consensus 1750 ~~~~l~~~i~~-~~~~~~P~~~L~e~~~~~~~-~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~ 1822 (1931)
+.+++.+.+.. .....|||+.||||||+.+. .++|++.. .| +.|+|+|+++|..+++|.|.|||+|++.||+.
T Consensus 145 i~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~ 224 (235)
T PRK12371 145 IQRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEK 224 (235)
T ss_pred HHHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHH
Confidence 88887775543 23467999999999998755 46999753 34 47999999999999999999999999999999
Q ss_pred HHHHHHh
Q 000174 1823 ALAVLKE 1829 (1931)
Q Consensus 1823 AL~~L~~ 1829 (1931)
||+.|+.
T Consensus 225 al~~~~~ 231 (235)
T PRK12371 225 MLEREGV 231 (235)
T ss_pred HHHHhhh
Confidence 9999864
No 28
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-39 Score=410.28 Aligned_cols=336 Identities=23% Similarity=0.272 Sum_probs=253.9
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCC
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPK 360 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT 360 (1931)
|+..+..+...+.+...++.+|+++|.++++.+++ +|+|+++|||+|||++|++|+.+.+..... .....++|||+||
T Consensus 3 f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 33444444455889999999999999999999999 899999999999999999998877654321 2334689999999
Q ss_pred hhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++|+.|+++.+..+ +++++..++|+..... .......+++|+|+||++|++.+.++.+.+.++++|||||||+
T Consensus 83 ~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~----~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 83 RELAMQVADQARELAKHTHLDIATITGGVAYMN----HAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999887765 4789999999876432 2222335789999999999999999888899999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.. +.|...+..+....+ ...++++||||+.. ..+..+...+ ...|....
T Consensus 159 ~l~-~~~~~~~~~i~~~~~--~~~q~~~~SAT~~~-----------~~~~~~~~~~----------------~~~~~~i~ 208 (434)
T PRK11192 159 MLD-MGFAQDIETIAAETR--WRKQTLLFSATLEG-----------DAVQDFAERL----------------LNDPVEVE 208 (434)
T ss_pred HhC-CCcHHHHHHHHHhCc--cccEEEEEEeecCH-----------HHHHHHHHHH----------------ccCCEEEE
Confidence 997 478888877766543 24789999999752 0111111111 11111110
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
. .+... .+
T Consensus 209 ~--~~~~~-------------------------------------------------~~--------------------- 216 (434)
T PRK11192 209 A--EPSRR-------------------------------------------------ER--------------------- 216 (434)
T ss_pred e--cCCcc-------------------------------------------------cc---------------------
Confidence 0 00000 00
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
..+.....
T Consensus 217 ------------------------------------------------------------------------~~i~~~~~ 224 (434)
T PRK11192 217 ------------------------------------------------------------------------KKIHQWYY 224 (434)
T ss_pred ------------------------------------------------------------------------cCceEEEE
Confidence 00000000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
.......|...|..++.. ....++||||+++..+..|++.|.. .++++..+||
T Consensus 225 --------------------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g 277 (434)
T PRK11192 225 --------------------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK----AGINCCYLEG 277 (434)
T ss_pred --------------------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecC
Confidence 000112344555555532 2457999999999999999999987 6789999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|.+...|+||+|||||.|..+
T Consensus 278 -----~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g 343 (434)
T PRK11192 278 -----EMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKG 343 (434)
T ss_pred -----CCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999874
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-38 Score=404.54 Aligned_cols=338 Identities=22% Similarity=0.272 Sum_probs=252.7
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc----CCCcEEEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ----NKKMLAVF 356 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~----~~~~~vL~ 356 (1931)
.+......+...+.+.+.++..|+++|.++++.+++ +|+|++++||||||++|++|+.+.+...... ....++||
T Consensus 88 ~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 88 RFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred CHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 344444444455889999999999999999999999 8999999999999999999988776542110 12468999
Q ss_pred EeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEe
Q 000174 357 LVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILD 433 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~D 433 (1931)
|+||++|+.||.+.++.+. ++++..++|+..... .........++|+|+||++|++++.++.+.+.++++||||
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~---~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDK---QLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHH---HHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999988764 788888999865322 2222123568999999999999998888889999999999
Q ss_pred CCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 434 EaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
|||++.+. .|...++.+....+....++++++|||... .+..+... +...|
T Consensus 245 Eah~l~~~-~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~------------~~~~~~~~----------------~~~~~ 295 (475)
T PRK01297 245 EADRMLDM-GFIPQVRQIIRQTPRKEERQTLLFSATFTD------------DVMNLAKQ----------------WTTDP 295 (475)
T ss_pred hHHHHHhc-ccHHHHHHHHHhCCCCCCceEEEEEeecCH------------HHHHHHHH----------------hccCC
Confidence 99999884 677777777776655445789999999642 11111111 11111
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+......
T Consensus 296 ~~v~~~~~~~~--------------------------------------------------------------------- 306 (475)
T PRK01297 296 AIVEIEPENVA--------------------------------------------------------------------- 306 (475)
T ss_pred EEEEeccCcCC---------------------------------------------------------------------
Confidence 11000000000
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
...+.
T Consensus 307 ---------------------------------------------------------------------------~~~~~ 311 (475)
T PRK01297 307 ---------------------------------------------------------------------------SDTVE 311 (475)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 00000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
. .+.....+.|...|.+++.. ....++||||+++.+++.|++.|.. .++.+.
T Consensus 312 ~---------------------~~~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~----~~~~~~ 363 (475)
T PRK01297 312 Q---------------------HVYAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVK----DGINAA 363 (475)
T ss_pred E---------------------EEEEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHH----cCCCEE
Confidence 0 00000112344455555543 2356899999999999999999987 578999
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
.+|| ++++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.|+.+|+||+|||||.|+.+
T Consensus 364 ~~~g-----~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g 433 (475)
T PRK01297 364 QLSG-----DVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG 433 (475)
T ss_pred EEEC-----CCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999874
No 30
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=1.1e-40 Score=389.85 Aligned_cols=210 Identities=29% Similarity=0.442 Sum_probs=184.8
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||++||++++|.||.+|+.||||++|+
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~---~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA 79 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA---THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLY 79 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc---ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHH
Confidence 56799999999999999999999999854 489999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|.++||++||+++.++.. .++...+++|+|+|||||||||+|+|++ .++.|+.
T Consensus 80 ~IA~~LgL~~~Lrlg~ge~~-----------------------sgg~~~~kILADvfEALIGAIYLDsG~e--~a~~fV~ 134 (413)
T PRK12372 80 EIAQALNISEGLRLGEGELR-----------------------SGGFRRPSILADAFEAIIGAVFLDGGFE--AAQGVIK 134 (413)
T ss_pred HHHHHcCchHhhhcCcchhh-----------------------cCCCCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 99999999999998876532 2335679999999999999999999976 5677888
Q ss_pred cCCCCCCCC---CCCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEE-EEEeecCCHHHHHHHHHH
Q 000174 1752 PLLDPMVTP---ETLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQ-VGVAQNPQKKMAQKLAAR 1821 (1931)
Q Consensus 1752 ~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~-~~~g~g~skk~Ak~~AA~ 1821 (1931)
.+|.++++. ....+|||+.||||||+++.. ++|++.. .| +.|+|.|+|+|.. .++|.|.|||+|++.||+
T Consensus 135 ~ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr 214 (413)
T PRK12372 135 RLYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAK 214 (413)
T ss_pred HHHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHH
Confidence 887776543 234679999999999998876 5998654 34 4799999999854 489999999999999999
Q ss_pred HHHHHHHh
Q 000174 1822 NALAVLKE 1829 (1931)
Q Consensus 1822 ~AL~~L~~ 1829 (1931)
.||++|..
T Consensus 215 ~AL~kL~~ 222 (413)
T PRK12372 215 KALDEVMA 222 (413)
T ss_pred HHHHHHhc
Confidence 99999984
No 31
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.6e-37 Score=418.37 Aligned_cols=477 Identities=24% Similarity=0.318 Sum_probs=295.5
Q ss_pred CCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC--
Q 000174 300 PEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY-- 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l-- 377 (1931)
+..++|+||.+++..++.+|+|+++|||+|||++|++++.+++. ..+.++|||+||++|+.||.+.++++++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 45689999999999999999999999999999999999888764 24568999999999999999999998866
Q ss_pred -cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 -VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 -~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
++..++|+.... .....+..++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.|..+++.+....
T Consensus 87 ~~v~~~~g~~~~~-----~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~- 160 (773)
T PRK13766 87 EKIVVFTGEVSPE-----KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA- 160 (773)
T ss_pred ceEEEEeCCCCHH-----HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcC-
Confidence 788888876543 2233346789999999999998888888999999999999999999889999988776543
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccchhhhHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLK 534 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~ 534 (1931)
..|+++||||||... ...+..+...|....... .....+..++..+....+..........+...+.
T Consensus 161 --~~~~il~lTaTP~~~---------~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~ 229 (773)
T PRK13766 161 --KNPLVLGLTASPGSD---------EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLN 229 (773)
T ss_pred --CCCEEEEEEcCCCCC---------HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHH
Confidence 358999999999742 124555555554333222 2344566666655544444443333334444443
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HH
Q 000174 535 QMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQS--FL 612 (1931)
Q Consensus 535 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~--~l 612 (1931)
.+.......+....... ..+. . .....+......+...+..... ..+..... .+
T Consensus 230 ~~~~~~l~~l~~~~~~~-----~~~~---------------~---~~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 285 (773)
T PRK13766 230 EALKDRLKKLKELGVIV-----SISP---------------D---VSKKELLGLQKKLQQEIANDDS-EGYEAISILAEA 285 (773)
T ss_pred HHHHHHHHHHHHCCCcc-----cCCC---------------C---cCHHHHHHHHHHHHHHhhcCch-HHHHHHHHHHHH
Confidence 33222111111000000 0000 0 0000000000000000000000 00000000 00
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
..+..............-..|+..+..... ..+. . .....-..+. .....
T Consensus 286 ~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~---~~~~-~--------------~~~~~l~~~~------------~~~~~ 335 (773)
T PRK13766 286 MKLRHAVELLETQGVEALRRYLERLREEAR---SSGG-S--------------KASKRLVEDP------------RFRKA 335 (773)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhhcc---ccCC-c--------------HHHHHHHhCH------------HHHHH
Confidence 000000000000000001122222211100 0000 0 0000000000 00000
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccccHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEMRTFQ 768 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~~~~~ 768 (1931)
+.........++|+..|.++|.+. ...++.++||||+++.++..|.+.|.. .++++..+||.+.. .+|++.+
T Consensus 336 ~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~----~~~~~~~~~g~~~~~~~~~~~~~~ 411 (773)
T PRK13766 336 VRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK----EGIKAVRFVGQASKDGDKGMSQKE 411 (773)
T ss_pred HHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh----CCCceEEEEccccccccCCCCHHH
Confidence 101111124579999999999876 235778999999999999999999976 67889999995322 3588999
Q ss_pred HHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-EEEEEecCChhHHHHHHHHH
Q 000174 769 MQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-YILMIERGNLSHATFLRNAR 847 (1931)
Q Consensus 769 R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-~ivlv~~~~~~~~~~l~~~~ 847 (1931)
|.+++++|++|++++||||++++||+|+|+|++||+||+|+|+.+|+||+||+||.|.. .++|+..+..++..++...
T Consensus 412 r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~~y~~~~- 490 (773)
T PRK13766 412 QIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEAYYWSSR- 490 (773)
T ss_pred HHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHHHHHHhh-
Confidence 99999999999999999999999999999999999999999999999999999997655 4455555554444444333
Q ss_pred HHHHHHHHHH
Q 000174 848 NSEETLRKEA 857 (1931)
Q Consensus 848 ~~e~~l~~~~ 857 (1931)
+.|+.|.+..
T Consensus 491 ~ke~~~~~~l 500 (773)
T PRK13766 491 RKEKKMKEEL 500 (773)
T ss_pred HHHHHHHHHH
Confidence 3455554433
No 32
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=363.56 Aligned_cols=329 Identities=20% Similarity=0.238 Sum_probs=250.7
Q ss_pred cchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh---hcCCCcEEEEEeCChhHHHH
Q 000174 291 KKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ---RQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 291 ~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~---~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
...+.+.+.||.+|+|+|.+|.|.+++ .|+|.++.||+|||++|++|-.-++...+ .+..++.+|+++||++|+.|
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalq 309 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQ 309 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHH
Confidence 355889999999999999999999999 99999999999999999997554433221 13456779999999999999
Q ss_pred HHHHHHHHc--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH
Q 000174 367 QAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 367 ~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
+.-+..++. +++..+++|+.+. ..+...+..+.+|+|+||++|.++...+.+.+..+.+||+||||+|++ ++|
T Consensus 310 ie~e~~kysyng~ksvc~ygggnR----~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLD-MgF 384 (629)
T KOG0336|consen 310 IEGEVKKYSYNGLKSVCVYGGGNR----NEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD-MGF 384 (629)
T ss_pred HHhHHhHhhhcCcceEEEecCCCc----hhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhc-ccc
Confidence 988887754 7888888887653 455566668999999999999999999999999999999999999999 789
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeec-CCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTAS-PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA 523 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTAT-P~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~ 523 (1931)
...++.++..... ..++++.||| |. .++.|.. .+...|....+- ..
T Consensus 385 EpqIrkilldiRP--DRqtvmTSATWP~-------------~VrrLa~----------------sY~Kep~~v~vG--sL 431 (629)
T KOG0336|consen 385 EPQIRKILLDIRP--DRQTVMTSATWPE-------------GVRRLAQ----------------SYLKEPMIVYVG--SL 431 (629)
T ss_pred cHHHHHHhhhcCC--cceeeeecccCch-------------HHHHHHH----------------HhhhCceEEEec--cc
Confidence 8877777654332 3688999999 43 2223321 122222211110 00
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~ 603 (1931)
. .-
T Consensus 432 d------------------------------------L~----------------------------------------- 434 (629)
T KOG0336|consen 432 D------------------------------------LV----------------------------------------- 434 (629)
T ss_pred c------------------------------------ee-----------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccc
Q 000174 604 AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVV 683 (1931)
Q Consensus 604 a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~ 683 (1931)
+. .
T Consensus 435 a~---------------------------------------------------------------------~-------- 437 (629)
T KOG0336|consen 435 AV---------------------------------------------------------------------K-------- 437 (629)
T ss_pred ee---------------------------------------------------------------------e--------
Confidence 00 0
Q ss_pred cCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 684 SGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 684 s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
.+.+.+.....+.|+...-.++.. ..++.|+||||.++..|+-|..-|.- .++.+..+|| +
T Consensus 438 --------sVkQ~i~v~~d~~k~~~~~~f~~~--ms~ndKvIiFv~~K~~AD~LSSd~~l----~gi~~q~lHG-----~ 498 (629)
T KOG0336|consen 438 --------SVKQNIIVTTDSEKLEIVQFFVAN--MSSNDKVIIFVSRKVMADHLSSDFCL----KGISSQSLHG-----N 498 (629)
T ss_pred --------eeeeeEEecccHHHHHHHHHHHHh--cCCCceEEEEEechhhhhhccchhhh----cccchhhccC-----C
Confidence 000000011223444333333333 35678999999999999998877654 7999999999 8
Q ss_pred ccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 764 ~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
..|.+|+.+++.|++|+++||||||+++||||+|++.+|+|||.|.|...|+||+||+||+|.++..
T Consensus 499 r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 499 REQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred hhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999988443
No 33
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.8e-39 Score=360.78 Aligned_cols=369 Identities=20% Similarity=0.223 Sum_probs=278.6
Q ss_pred ccccccccCCCCCCCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHh
Q 000174 267 WEADHNRAGKEANGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDL 345 (1931)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~ 345 (1931)
|....+.+..++...+|.+..+.......+++.|+..|||+|.+.+|.++. +|.|..+-||||||++|++|+.-+..+.
T Consensus 156 ~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~Leq 235 (610)
T KOG0341|consen 156 LHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQ 235 (610)
T ss_pred heEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHH
Confidence 433344445555556666666665667889999999999999999999999 9999999999999999999877555433
Q ss_pred h-----hcCCCcEEEEEeCChhHHHHHHHHHHHHc---------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHH
Q 000174 346 Q-----RQNKKMLAVFLVPKVPLVYQQAEVIREQT---------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQ 411 (1931)
Q Consensus 346 ~-----~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq 411 (1931)
. ..+.++..||+||+|+|+.|.++.+..++ .++..++.|+..+ .++......+.+|+|+||+
T Consensus 236 E~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v----~eql~~v~~GvHivVATPG 311 (610)
T KOG0341|consen 236 EMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPV----REQLDVVRRGVHIVVATPG 311 (610)
T ss_pred HhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccH----HHHHHHHhcCeeEEEcCcc
Confidence 2 25678889999999999999999988764 2567778888875 3455556689999999999
Q ss_pred HHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHH
Q 000174 412 ILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLES 491 (1931)
Q Consensus 412 ~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~ 491 (1931)
+|.|+|....++++-..+|++|||+++.+ ++|...++.++...+. +.+.|++|||-.. .|+.+..
T Consensus 312 RL~DmL~KK~~sLd~CRyL~lDEADRmiD-mGFEddir~iF~~FK~--QRQTLLFSATMP~------------KIQ~FAk 376 (610)
T KOG0341|consen 312 RLMDMLAKKIMSLDACRYLTLDEADRMID-MGFEDDIRTIFSFFKG--QRQTLLFSATMPK------------KIQNFAK 376 (610)
T ss_pred hHHHHHHHhhccHHHHHHhhhhhHHHHhh-ccchhhHHHHHHHHhh--hhheeeeeccccH------------HHHHHHH
Confidence 99999999999999999999999999998 6998888887766543 4789999999442 2222111
Q ss_pred hcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh
Q 000174 492 KLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY 571 (1931)
Q Consensus 492 ~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 571 (1931)
.-+-+|..+.+.-.....
T Consensus 377 ----------------SALVKPvtvNVGRAGAAs---------------------------------------------- 394 (610)
T KOG0341|consen 377 ----------------SALVKPVTVNVGRAGAAS---------------------------------------------- 394 (610)
T ss_pred ----------------hhcccceEEecccccccc----------------------------------------------
Confidence 011123222111000000
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccc
Q 000174 572 GVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVS 651 (1931)
Q Consensus 572 ~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~ 651 (1931)
..+++ +-.|.+
T Consensus 395 ---------------------------------ldViQ--------------------evEyVk---------------- 405 (610)
T KOG0341|consen 395 ---------------------------------LDVIQ--------------------EVEYVK---------------- 405 (610)
T ss_pred ---------------------------------hhHHH--------------------HHHHHH----------------
Confidence 00000 001110
Q ss_pred cccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh
Q 000174 652 KKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV 731 (1931)
Q Consensus 652 ~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r 731 (1931)
...|+..|++-|.+ ....++||++.+
T Consensus 406 --------------------------------------------------qEaKiVylLeCLQK----T~PpVLIFaEkK 431 (610)
T KOG0341|consen 406 --------------------------------------------------QEAKIVYLLECLQK----TSPPVLIFAEKK 431 (610)
T ss_pred --------------------------------------------------hhhhhhhHHHHhcc----CCCceEEEeccc
Confidence 12355566666643 467899999999
Q ss_pred hHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCH
Q 000174 732 VAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTV 811 (1931)
Q Consensus 732 ~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~ 811 (1931)
..++.+.++|-- .|+.++.||| +..|++|...++.||.|+-+|||||||++.|+|+|++.+|||||+|...
T Consensus 432 ~DVD~IhEYLLl----KGVEavaIHG-----GKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 432 ADVDDIHEYLLL----KGVEAVAIHG-----GKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred cChHHHHHHHHH----ccceeEEeec-----CcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHH
Confidence 999999999865 8999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHH
Q 000174 812 LAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARN 848 (1931)
Q Consensus 812 ~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~ 848 (1931)
..|+||+||+||.|.+++.-+.-.....+..+.+++.
T Consensus 503 ENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~ 539 (610)
T KOG0341|consen 503 ENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKH 539 (610)
T ss_pred HHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHH
Confidence 9999999999999999655443222333445555543
No 34
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=356.19 Aligned_cols=353 Identities=22% Similarity=0.277 Sum_probs=278.5
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
...|++...-....-.+-..|+.+|.|+|.++||.++. +|+++.+..|+|||-+|++|.++.+.. ......++|+|
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~---~~~~IQ~~ilV 160 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP---KKNVIQAIILV 160 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc---cccceeEEEEe
Confidence 34455555544455778889999999999999999999 999999999999999999998877653 34567899999
Q ss_pred CChhHHHHHHHH---HHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEV---IREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~---l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+-|..+. +.+++++.|.+.+|+.+.. +...++...++++|+||++++|+...+.-.+++..++|+|||
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lr----DDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR----DDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccc----cceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 999999886555 4556799999999998652 333445578999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeec-CCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS-PVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTAT-P~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
|.++.. .|..++..++...|+. +++++.||| |.. -...+.+++.+|.
T Consensus 237 DKlLs~-~F~~~~e~li~~lP~~--rQillySATFP~t-----------------------------Vk~Fm~~~l~kPy 284 (459)
T KOG0326|consen 237 DKLLSV-DFQPIVEKLISFLPKE--RQILLYSATFPLT-----------------------------VKGFMDRHLKKPY 284 (459)
T ss_pred hhhhch-hhhhHHHHHHHhCCcc--ceeeEEecccchh-----------------------------HHHHHHHhccCcc
Confidence 999995 8999999999988875 899999999 432 1224446777776
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
++.. .+.+
T Consensus 285 ~INL-----------M~eL------------------------------------------------------------- 292 (459)
T KOG0326|consen 285 EINL-----------MEEL------------------------------------------------------------- 292 (459)
T ss_pred eeeh-----------hhhh-------------------------------------------------------------
Confidence 5421 0000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
++....++.+
T Consensus 293 tl~GvtQyYa---------------------------------------------------------------------- 302 (459)
T KOG0326|consen 293 TLKGVTQYYA---------------------------------------------------------------------- 302 (459)
T ss_pred hhcchhhhee----------------------------------------------------------------------
Confidence 0000111111
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
-...+.|+..|-.++.+. .-.++||||++...++.|+..+.+ -|+.+.+
T Consensus 303 ------------------------fV~e~qKvhCLntLfskL---qINQsIIFCNS~~rVELLAkKITe----lGyscyy 351 (459)
T KOG0326|consen 303 ------------------------FVEERQKVHCLNTLFSKL---QINQSIIFCNSTNRVELLAKKITE----LGYSCYY 351 (459)
T ss_pred ------------------------eechhhhhhhHHHHHHHh---cccceEEEeccchHhHHHHHHHHh----ccchhhH
Confidence 012245777777776665 356899999999999999999998 4799999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|. .|.+..|..++..||+|.++.|||||.+.||||+|++|+|||||.|.++++|.||+||+||.|.-+ +.++
T Consensus 352 iHa-----kM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLi 426 (459)
T KOG0326|consen 352 IHA-----KMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI 426 (459)
T ss_pred HHH-----HHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999874 4445
Q ss_pred ecCChhHHHHHHHHHHHHHHHHH
Q 000174 833 ERGNLSHATFLRNARNSEETLRK 855 (1931)
Q Consensus 833 ~~~~~~~~~~l~~~~~~e~~l~~ 855 (1931)
.-++. .++.++|+++..
T Consensus 427 tyedr------f~L~~IE~eLGt 443 (459)
T KOG0326|consen 427 TYEDR------FNLYRIEQELGT 443 (459)
T ss_pred ehhhh------hhHHHHHHHhcc
Confidence 43321 234556665543
No 35
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-38 Score=370.09 Aligned_cols=362 Identities=20% Similarity=0.245 Sum_probs=248.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHh----------hhcC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDL----------QRQN 349 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~----------~~~~ 349 (1931)
.|..++.......++..+||..|+++|...+|.+.. .|+|.+++||||||++|.+||.+.+... ...+
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 345554444466999999999999999999999988 7999999999999999999998733221 1234
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHH---HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc---c
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIRE---QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII---K 423 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~---~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l---~ 423 (1931)
.++.+|||+|||+||.|+.+.|.. .+++++..++||+.+- .+-+-+...++|||+|||+|+.++..+.. .
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavq----KQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQ----KQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHH----HHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 445699999999999999988876 4589999999998752 22222335899999999999999987644 6
Q ss_pred ccceeEEEEeCCCcccCCCcHHHHHHHHHhh---cCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe
Q 000174 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHT---TSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI 500 (1931)
Q Consensus 424 l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~---~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~ 500 (1931)
+.++++||+||||||....-|... ..++.. .+.....+.|.+|||..-.... .+.....
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~El-s~lL~~L~e~~~~~qrQTlVFSATlt~~~~~--------~~~~~~k--------- 399 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEEL-SKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ--------PLSSSRK--------- 399 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHH-HHHHHHhhhhhcccccceEEEEEEeehhhcC--------hhHHhhh---------
Confidence 788999999999999987445433 333332 2334457899999996531110 0000000
Q ss_pred cchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccch
Q 000174 501 KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD 580 (1931)
Q Consensus 501 ~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~ 580 (1931)
.... ...+...|..++..+. .+++-.++ .
T Consensus 400 -------~~~k--------------~~~~~~kiq~Lmk~ig-------~~~kpkii------------------D----- 428 (731)
T KOG0347|consen 400 -------KKDK--------------EDELNAKIQHLMKKIG-------FRGKPKII------------------D----- 428 (731)
T ss_pred -------ccch--------------hhhhhHHHHHHHHHhC-------ccCCCeeE------------------e-----
Confidence 0000 0011111111111100 00000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH-HHhhhhhhhcccccccccccc
Q 000174 581 GAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVV-SLLQCELVEGAVSKKDAKVVD 659 (1931)
Q Consensus 581 ~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~-~~l~~~~~~~~~~~~~~~i~~ 659 (1931)
+.+ +......+. ..+.|.+
T Consensus 429 ------------------~t~----------------------------q~~ta~~l~Es~I~C~~-------------- 448 (731)
T KOG0347|consen 429 ------------------LTP----------------------------QSATASTLTESLIECPP-------------- 448 (731)
T ss_pred ------------------cCc----------------------------chhHHHHHHHHhhcCCc--------------
Confidence 000 000000000 0011110
Q ss_pred cccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHH
Q 000174 660 SENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPK 739 (1931)
Q Consensus 660 ~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 739 (1931)
..|-..|.-+|..| ..++||||++++.+..|+-
T Consensus 449 -------------------------------------------~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~ 481 (731)
T KOG0347|consen 449 -------------------------------------------LEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTV 481 (731)
T ss_pred -------------------------------------------cccceeEEEEEeec----CCceEEEechHHHHHHHHH
Confidence 01111122222223 5799999999999999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
+|..+ ++.+..+|. .|.|++|...|++|++....||||||||+||||||+|.+||||-.|.+..-||||.|
T Consensus 482 ~L~~L----~i~p~~LHA-----~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSG 552 (731)
T KOG0347|consen 482 LLNNL----DIPPLPLHA-----SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSG 552 (731)
T ss_pred HHhhc----CCCCchhhH-----HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccc
Confidence 99984 688899999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEE
Q 000174 820 RARKPGSDYILMI 832 (1931)
Q Consensus 820 Ra~R~Gs~~ivlv 832 (1931)
|++|+++.++.++
T Consensus 553 RTARA~~~Gvsvm 565 (731)
T KOG0347|consen 553 RTARANSEGVSVM 565 (731)
T ss_pred ccccccCCCeEEE
Confidence 9999999854433
No 36
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.1e-37 Score=387.81 Aligned_cols=339 Identities=19% Similarity=0.230 Sum_probs=249.1
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.++...+..+...+++.+.++..|+|+|.++++.+++ +|+|+++|||||||++|++++.+.+.. ...+.++|||+|
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~---~~~~~~~lil~P 104 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY---DLNACQALILAP 104 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC---CCCCceEEEECC
Confidence 3344455444455888999999999999999999998 999999999999999999998877642 224568999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.|+.+.+..+. +..+..+.|+... ...|.....+++|+|+||++|.+.+.++.+.+.++++||+||||
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVV----RDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCH----HHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999888764 4566667776543 34455555678999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++... .|...+..++...+ ..++++++|||+.+ .+..+.. .+...|...
T Consensus 181 ~~~~~-~~~~~~~~i~~~~~--~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~~~~ 229 (401)
T PTZ00424 181 EMLSR-GFKGQIYDVFKKLP--PDVQVALFSATMPN------------EILELTT----------------KFMRDPKRI 229 (401)
T ss_pred HHHhc-chHHHHHHHHhhCC--CCcEEEEEEecCCH------------HHHHHHH----------------HHcCCCEEE
Confidence 99875 56655555555443 34789999999753 1111111 111111111
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+....... . . + ...+.
T Consensus 230 ~~~~~~~~~----------------------~--~---~------------~~~~~------------------------ 246 (401)
T PTZ00424 230 LVKKDELTL----------------------E--G---I------------RQFYV------------------------ 246 (401)
T ss_pred EeCCCCccc----------------------C--C---c------------eEEEE------------------------
Confidence 100000000 0 0 0 00000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
T Consensus 247 -------------------------------------------------------------------------------- 246 (401)
T PTZ00424 247 -------------------------------------------------------------------------------- 246 (401)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.......+...+.+++.. ....++||||+++..++.+++.|.. .++.+..+|
T Consensus 247 ---------------------~~~~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~----~~~~~~~~h 298 (401)
T PTZ00424 247 ---------------------AVEKEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE----RDFTVSCMH 298 (401)
T ss_pred ---------------------ecChHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH----CCCcEEEEe
Confidence 000000122233333322 2346899999999999999999987 578999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEe
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIE 833 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~ 833 (1931)
| ++++.+|+.++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+|||||.|..+ ++++.
T Consensus 299 ~-----~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~ 372 (401)
T PTZ00424 299 G-----DMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVT 372 (401)
T ss_pred C-----CCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEc
Confidence 9 999999999999999999999999999999999999999999999999999999999999998774 44443
No 37
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-36 Score=344.81 Aligned_cols=341 Identities=22% Similarity=0.271 Sum_probs=267.7
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~Lv 358 (1931)
.++..++......++.+..|.+|||+|.++++.++. +++|-.+-||||||.+|+.|++-++.... ..+.++..||||
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 344444444455788999999999999999999999 99999999999999999998876664433 247788999999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|+..+.+++ .++++..+||+.+... +...+..++.||||||++|++++.-+...+.++.+||||||
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~e----Q~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEa 379 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWE----QSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEA 379 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHH----HHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEech
Confidence 9999999999999987 4899999999976422 22233379999999999999999999999999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
++|.. ++|...++.+...... ..+.|++|||-.. .|..|.. .++..|..
T Consensus 380 drmfd-mGfe~qVrSI~~hirp--drQtllFsaTf~~------------kIe~lar----------------d~L~dpVr 428 (731)
T KOG0339|consen 380 DRMFD-MGFEPQVRSIKQHIRP--DRQTLLFSATFKK------------KIEKLAR----------------DILSDPVR 428 (731)
T ss_pred hhhhc-cccHHHHHHHHhhcCC--cceEEEeeccchH------------HHHHHHH----------------HHhcCCee
Confidence 99998 6999998888776543 3789999999542 2222211 11122222
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
++.. +.
T Consensus 429 vVqg-~v------------------------------------------------------------------------- 434 (731)
T KOG0339|consen 429 VVQG-EV------------------------------------------------------------------------- 434 (731)
T ss_pred EEEe-eh-------------------------------------------------------------------------
Confidence 1110 00
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
|..
T Consensus 435 ----gea------------------------------------------------------------------------- 437 (731)
T KOG0339|consen 435 ----GEA------------------------------------------------------------------------- 437 (731)
T ss_pred ----hcc-------------------------------------------------------------------------
Confidence 000
Q ss_pred cccccccccCCCchhhhhhhcccC-CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVAD-GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~-~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.+.|.+.+.. .....|+..|++.|.++ ....++||||..+..++.++..|+- .++.+..
T Consensus 438 --------------n~dITQ~V~V~~s~~~Kl~wl~~~L~~f--~S~gkvlifVTKk~~~e~i~a~Lkl----k~~~v~l 497 (731)
T KOG0339|consen 438 --------------NEDITQTVSVCPSEEKKLNWLLRHLVEF--SSEGKVLIFVTKKADAEEIAANLKL----KGFNVSL 497 (731)
T ss_pred --------------ccchhheeeeccCcHHHHHHHHHHhhhh--ccCCcEEEEEeccCCHHHHHHHhcc----ccceeee
Confidence 0000000000 02235888888888776 3457999999999999999999975 8999999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc---EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD---YILM 831 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~---~ivl 831 (1931)
+|| +|.|.+|.++|.+|+++.+.|||+|||+++|+|||....|||||...+...|.||+||+||+|.+ |.++
T Consensus 498 lhg-----dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 498 LHG-----DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred ecC-----chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEe
Confidence 999 99999999999999999999999999999999999999999999999999999999999999887 4444
Q ss_pred Ee
Q 000174 832 IE 833 (1931)
Q Consensus 832 v~ 833 (1931)
++
T Consensus 573 Te 574 (731)
T KOG0339|consen 573 TE 574 (731)
T ss_pred ch
Confidence 44
No 38
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=5.6e-37 Score=355.30 Aligned_cols=215 Identities=35% Similarity=0.509 Sum_probs=188.4
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCC--CCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhCh
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPS--SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNN 1667 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n 1667 (1931)
.++..||++|||+|+|+.||.+||||+||.. ....+|||||||||+||+++|++|||.+||++++|.|+.+|+.+|||
T Consensus 3 ~~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn 82 (229)
T PRK00102 3 KDLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVRE 82 (229)
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCH
Confidence 3578899999999999999999999999964 24579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEE
Q 000174 1668 ENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVW 1747 (1931)
Q Consensus 1668 ~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~ 1747 (1931)
++|+.+|.++||++||++++.... .+....+|+++|+|||+|||||+|+|++ .++
T Consensus 83 ~~la~~a~~lgl~~~i~~~~~~~~-----------------------~~~~~~~k~~ad~~EA~iGAiyld~g~~--~~~ 137 (229)
T PRK00102 83 ESLAEIARELGLGEYLLLGKGEEK-----------------------SGGRRRPSILADAFEALIGAIYLDQGLE--AAR 137 (229)
T ss_pred HHHHHHHHHCCcHHHHccCcHHHH-----------------------cCCCCCccHHHHHHHHHHHHHHHhCCHH--HHH
Confidence 999999999999999998765321 1223568999999999999999999875 667
Q ss_pred eeeccCCCCCCCCC---CCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHH
Q 000174 1748 QVFQPLLDPMVTPE---TLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKL 1818 (1931)
Q Consensus 1748 ~~~~~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~ 1818 (1931)
+|+..++.|++... ....||++.|+|+|++++.+ ++|++.. .| +.|+|+|+++|..+++|.|.|||+||+.
T Consensus 138 ~~i~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~ 217 (229)
T PRK00102 138 KFILRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQA 217 (229)
T ss_pred HHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHH
Confidence 88887777765542 35689999999999998876 5998754 33 5799999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 000174 1819 AARNALAVLKE 1829 (1931)
Q Consensus 1819 AA~~AL~~L~~ 1829 (1931)
||+.||+.|+.
T Consensus 218 AA~~Al~~l~~ 228 (229)
T PRK00102 218 AAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 39
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.1e-35 Score=389.29 Aligned_cols=343 Identities=19% Similarity=0.244 Sum_probs=236.0
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+.+.++.+|+++|.++++.+++ +|+|+.+|||||||++|++|+.+.+.. +++.++|||+||++|+.|+.++
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~----~~~~~aL~l~PtraLa~q~~~~ 100 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD----DPRATALYLAPTKALAADQLRA 100 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh----CCCcEEEEEcChHHHHHHHHHH
Confidence 44788899999999999999999999 999999999999999999999887753 3457899999999999999999
Q ss_pred HHHHc--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc----cccccceeEEEEeCCCcccCC--C
Q 000174 371 IREQT--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS----IIKMEAINLLILDECHHAVKK--H 442 (1931)
Q Consensus 371 l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~----~l~l~~i~lLV~DEaH~~~~~--~ 442 (1931)
++.+. ++++..+.|+...+ .. .....+++|+|+||++|...+-.. ...++++++|||||||.+.+. .
T Consensus 101 l~~l~~~~i~v~~~~Gdt~~~---~r--~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~ 175 (742)
T TIGR03817 101 VRELTLRGVRPATYDGDTPTE---ER--RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGS 175 (742)
T ss_pred HHHhccCCeEEEEEeCCCCHH---HH--HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHH
Confidence 99874 67888888876532 11 223357899999999987533211 113788999999999999762 1
Q ss_pred cHHHHHHHHHhhcC-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEec
Q 000174 443 PYSLVMSEFYHTTS-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYD 521 (1931)
Q Consensus 443 ~~~~im~~~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~ 521 (1931)
....+++.+..... ....|+++++|||..+ +. ...+.++...+..+.. ...+.+...+..+.
T Consensus 176 ~~~~il~rL~ri~~~~g~~~q~i~~SATi~n------~~------~~~~~l~g~~~~~i~~-----~~~~~~~~~~~~~~ 238 (742)
T TIGR03817 176 HVALVLRRLRRLCARYGASPVFVLASATTAD------PA------AAASRLIGAPVVAVTE-----DGSPRGARTVALWE 238 (742)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCC------HH------HHHHHHcCCCeEEECC-----CCCCcCceEEEEec
Confidence 12233333322221 1235899999999764 11 1122222221111100 00011111111111
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhH
Q 000174 522 KAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQ 601 (1931)
Q Consensus 522 ~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~ 601 (1931)
+... ... ...+
T Consensus 239 p~~~----------------------------------------------~~~----------------------~~~~- 249 (742)
T TIGR03817 239 PPLT----------------------------------------------ELT----------------------GENG- 249 (742)
T ss_pred CCcc----------------------------------------------ccc----------------------cccc-
Confidence 0000 000 0000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccc
Q 000174 602 WCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSH 681 (1931)
Q Consensus 602 ~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~ 681 (1931)
T Consensus 250 -------------------------------------------------------------------------------- 249 (742)
T TIGR03817 250 -------------------------------------------------------------------------------- 249 (742)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC-C---CCCceeEEEEc
Q 000174 682 VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP-S---LSFVKSASLIG 757 (1931)
Q Consensus 682 ~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~-~---l~~~~~~~l~G 757 (1931)
..........+...|.+++. .+.++||||+++..++.|+..|+... . ..+.++..+||
T Consensus 250 -------------~~~r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hg 311 (742)
T TIGR03817 250 -------------APVRRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRA 311 (742)
T ss_pred -------------cccccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheec
Confidence 00000001123334444443 25699999999999999999887521 0 01467889999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
++++++|.+++++|++|++++||||+++++|||||++++||+||.|.+..+|+||+|||||.|...+.++
T Consensus 312 -----g~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 312 -----GYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred -----CCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998754443
No 40
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-36 Score=347.50 Aligned_cols=362 Identities=20% Similarity=0.288 Sum_probs=236.5
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+.+.++.+..++|+|..++++++. +|+.|.+|||||||++|.+||.+.+... .-+.-++|||+||++|
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R--~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSR--PVKRLRAVVIVPTREL 227 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccC--CccceEEEEEeeHHHH
Confidence 558889999999999999999853 6899999999999999999999887642 2345789999999999
Q ss_pred HHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC----CccEEEEcHHHHHHHHhc-ccccccceeEEEEeCC
Q 000174 364 VYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD----TKQVLVMTAQILLNILRH-SIIKMEAINLLILDEC 435 (1931)
Q Consensus 364 v~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~----~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEa 435 (1931)
+.|.+++|..+. |+.|+...|..+... +..+-.-. ..+|+|+||++|.|+|.+ ..+.+..+.++|+|||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~---E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEA 304 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLED---EARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEA 304 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHH---HHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechH
Confidence 999999999986 788888888765422 22111112 349999999999999985 5689999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCC----CcEEEEEe--ecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhh
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEK----RPSVFGMT--ASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKH 509 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~----~p~iLgLT--ATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~ 509 (1931)
||+++. .|...+......+.... .-.+|-+. ++|.. +..+...++ .
T Consensus 305 DRll~q-sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~~--------------~ 356 (620)
T KOG0350|consen 305 DRLLDQ-SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKLG--------------K 356 (620)
T ss_pred HHHHHH-HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchh-------------hHHHHhhcC--------------C
Confidence 999985 67766655544332210 01111111 12221 111111110 0
Q ss_pred CCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHH
Q 000174 510 VPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKL 589 (1931)
Q Consensus 510 ~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 589 (1931)
...|.-..+ + ...+.+.-..+.+.-... +.+..+. .
T Consensus 357 ~~~~l~kL~-~---------satLsqdP~Kl~~l~l~~--------------------Prl~~v~---~----------- 392 (620)
T KOG0350|consen 357 LYPPLWKLV-F---------SATLSQDPSKLKDLTLHI--------------------PRLFHVS---K----------- 392 (620)
T ss_pred cCchhHhhh-c---------chhhhcChHHHhhhhcCC--------------------CceEEee---c-----------
Confidence 000100000 0 000000000000000000 0000000 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCc
Q 000174 590 RAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGT 669 (1931)
Q Consensus 590 ~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 669 (1931)
...|.+ .+ .
T Consensus 393 -------~~~~ry---------------------sl-------------------------------------------p 401 (620)
T KOG0350|consen 393 -------PLIGRY---------------------SL-------------------------------------------P 401 (620)
T ss_pred -------ccceee---------------------ec-------------------------------------------C
Confidence 000000 00 0
Q ss_pred cccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCC
Q 000174 670 NEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF 749 (1931)
Q Consensus 670 ~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~ 749 (1931)
+.|....+ ....--|...+..++..+ +-.++|+|+++..++..|+.+|+-.-.-..
T Consensus 402 ~~l~~~~v---------------------v~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 402 SSLSHRLV---------------------VTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhhhcee---------------------ecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 00000000 001112444556666554 567999999999999999999983211145
Q ss_pred ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 750 ~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
+++..+.| ..+.+.|.+.+++|++|++++|||||+++||||+-+++.|||||+|.+..+||||+||++|+|+.+.
T Consensus 458 ~~~s~~t~-----~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~ 532 (620)
T KOG0350|consen 458 FKVSEFTG-----QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY 532 (620)
T ss_pred chhhhhhh-----hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce
Confidence 67777888 8999999999999999999999999999999999999999999999999999999999999998855
Q ss_pred EEE
Q 000174 830 LMI 832 (1931)
Q Consensus 830 vlv 832 (1931)
.+.
T Consensus 533 a~t 535 (620)
T KOG0350|consen 533 AIT 535 (620)
T ss_pred EEE
Confidence 444
No 41
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=339.16 Aligned_cols=341 Identities=20% Similarity=0.218 Sum_probs=257.6
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---cCCCcEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR---QNKKMLAVF 356 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~---~~~~~~vL~ 356 (1931)
..|+..+..+...+++.+.|+.+||-+|..+||.+++ +|+++.+.||||||.+|++|+.+.+..... ...+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 4566777776677999999999999999999999999 999999999999999999999887765432 234568999
Q ss_pred EeCChhHHHHHHHHHHHHc-----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc-ccccceeEE
Q 000174 357 LVPKVPLVYQQAEVIREQT-----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI-IKMEAINLL 430 (1931)
Q Consensus 357 LvPT~~Lv~Q~~~~l~~~~-----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~-l~l~~i~lL 430 (1931)
||||++||.|.+.++.+.. .+++.-++.+++... .+.| +...++|||+||+.|+.++..+. ..+..+.+|
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv--~~~~--L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~L 174 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSV--NSVA--LMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFL 174 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHH--HHHH--HccCCCeEEeChHHHHHHHhhccchhhhheeeE
Confidence 9999999999999999854 355665665554321 1223 45789999999999999999887 678899999
Q ss_pred EEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhC
Q 000174 431 ILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHV 510 (1931)
Q Consensus 431 V~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~ 510 (1931)
|+||||-++. .+|...|+.+....|. ..+.++||||... .+..|..++ +
T Consensus 175 VvDEADLlls-fGYeedlk~l~~~LPr--~~Q~~LmSATl~d------------Dv~~LKkL~----------------l 223 (569)
T KOG0346|consen 175 VVDEADLLLS-FGYEEDLKKLRSHLPR--IYQCFLMSATLSD------------DVQALKKLF----------------L 223 (569)
T ss_pred Eechhhhhhh-cccHHHHHHHHHhCCc--hhhheeehhhhhh------------HHHHHHHHh----------------c
Confidence 9999999998 5999999999988774 4778999999752 233333221 1
Q ss_pred CCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHH
Q 000174 511 PMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLR 590 (1931)
Q Consensus 511 ~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 590 (1931)
+.|... ......... .+
T Consensus 224 ~nPviL--kl~e~el~~-------------------~d------------------------------------------ 240 (569)
T KOG0346|consen 224 HNPVIL--KLTEGELPN-------------------PD------------------------------------------ 240 (569)
T ss_pred cCCeEE--EeccccCCC-------------------cc------------------------------------------
Confidence 222211 100000000 00
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTN 670 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 670 (1931)
.+.+
T Consensus 241 -------qL~Q--------------------------------------------------------------------- 244 (569)
T KOG0346|consen 241 -------QLTQ--------------------------------------------------------------------- 244 (569)
T ss_pred -------cceE---------------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc
Q 000174 671 EIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV 750 (1931)
Q Consensus 671 ~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~ 750 (1931)
.........|+..|.-+|+-- --..|.||||++.+.+..|.-+|.. -|+
T Consensus 245 -------------------------y~v~cse~DKflllyallKL~--LI~gKsliFVNtIdr~YrLkLfLeq----FGi 293 (569)
T KOG0346|consen 245 -------------------------YQVKCSEEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQ----FGI 293 (569)
T ss_pred -------------------------EEEEeccchhHHHHHHHHHHH--HhcCceEEEEechhhhHHHHHHHHH----hCc
Confidence 000001123444444433321 1246899999999999999999998 689
Q ss_pred eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----------------------------------ccccCCC
Q 000174 751 KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----------------------------------VAEEGLD 795 (1931)
Q Consensus 751 ~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----------------------------------VaeeGlD 795 (1931)
+...+.| .++...|..++++|+.|-++++|||| -.+||||
T Consensus 294 ksciLNs-----eLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGID 368 (569)
T KOG0346|consen 294 KSCILNS-----ELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGID 368 (569)
T ss_pred Hhhhhcc-----cccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhcccc
Confidence 9999999 99999999999999999999999999 2358999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEE
Q 000174 796 IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILM 831 (1931)
Q Consensus 796 ip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivl 831 (1931)
+..|+.|||||+|.++.+||||+|||+|.+.+++++
T Consensus 369 F~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal 404 (569)
T KOG0346|consen 369 FHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL 404 (569)
T ss_pred chheeeeeecCCCCchHHHHHhccccccCCCCCceE
Confidence 999999999999999999999999999998875443
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=330.71 Aligned_cols=339 Identities=21% Similarity=0.229 Sum_probs=257.0
Q ss_pred CCCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEE
Q 000174 279 NGINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAV 355 (1931)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL 355 (1931)
+-.+|++...-++..+.+-.++|.+|..+|..++|.++. +|.|..+..|+|||.+|++.++.... .....+.++
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd---~~~~~PQ~i 164 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD---PDVVVPQCI 164 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC---ccccCCCce
Confidence 456677777777777888899999999999999999998 99999999999999999998655433 233456799
Q ss_pred EEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEE
Q 000174 356 FLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLI 431 (1931)
Q Consensus 356 ~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV 431 (1931)
.|+||++||.|..+++.+.- ++......-+.. .-+-..-..+|+|+||+.++|++.. ..+.+..+..+|
T Consensus 165 CLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk-------~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfV 237 (477)
T KOG0332|consen 165 CLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK-------AKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFV 237 (477)
T ss_pred eeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc-------cccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEE
Confidence 99999999999999988743 333333332221 1111123568999999999999887 778899999999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
+|||++|.+..+|...-..++...+. ..+++++|||-.. . -.....+.++
T Consensus 238 lDEAD~Mi~tqG~~D~S~rI~~~lP~--~~QllLFSATf~e------------~----------------V~~Fa~kivp 287 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQDQSIRIMRSLPR--NQQLLLFSATFVE------------K----------------VAAFALKIVP 287 (477)
T ss_pred ecchhhhhhcccccccchhhhhhcCC--cceEEeeechhHH------------H----------------HHHHHHHhcC
Confidence 99999999877777766667766653 4789999999542 1 1122335555
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
.|+..++.-+...
T Consensus 288 n~n~i~Lk~eel~------------------------------------------------------------------- 300 (477)
T KOG0332|consen 288 NANVIILKREELA------------------------------------------------------------------- 300 (477)
T ss_pred CCceeeeehhhcc-------------------------------------------------------------------
Confidence 5554443211100
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
+..+.+ .|+.
T Consensus 301 ----L~~IkQ------------------------------lyv~------------------------------------ 310 (477)
T KOG0332|consen 301 ----LDNIKQ------------------------------LYVL------------------------------------ 310 (477)
T ss_pred ----ccchhh------------------------------heee------------------------------------
Confidence 000000 0000
Q ss_pred cccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCce
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVK 751 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~ 751 (1931)
-.....|.+.|.++.... .-.+.||||.++.+|.+|+..|.. .|..
T Consensus 311 ---------------------------C~~~~~K~~~l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~----~Gh~ 356 (477)
T KOG0332|consen 311 ---------------------------CACRDDKYQALVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRA----EGHQ 356 (477)
T ss_pred ---------------------------ccchhhHHHHHHHHHhhh---hhhheEEEEeehhhHHHHHHHHHh----cCce
Confidence 001234666776654332 346899999999999999999998 7899
Q ss_pred eEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCC
Q 000174 752 SASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPG 825 (1931)
Q Consensus 752 ~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~G 825 (1931)
+..+|| ++...+|..++++||.|..+|||+|+|.+||||++.|++|||||+|- ++..|+||+|||||.|
T Consensus 357 V~~l~G-----~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG 431 (477)
T KOG0332|consen 357 VSLLHG-----DLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG 431 (477)
T ss_pred eEEeec-----cchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccc
Confidence 999999 99999999999999999999999999999999999999999999995 7899999999999999
Q ss_pred CcEEEEEe
Q 000174 826 SDYILMIE 833 (1931)
Q Consensus 826 s~~ivlv~ 833 (1931)
.+++.+--
T Consensus 432 kkG~a~n~ 439 (477)
T KOG0332|consen 432 KKGLAINL 439 (477)
T ss_pred ccceEEEe
Confidence 99666543
No 43
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-34 Score=366.86 Aligned_cols=321 Identities=17% Similarity=0.230 Sum_probs=226.9
Q ss_pred cCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
..|+..+||+|.++++.+++ +|+++.+|||+|||++|++|+.. ....+|||+||++|+.||...++. .+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---------~~~~~lVi~P~~~L~~dq~~~l~~-~g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---------SDGITLVISPLISLMEDQVLQLKA-SG 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---------cCCcEEEEecHHHHHHHHHHHHHH-cC
Confidence 47899999999999999998 99999999999999999999753 135699999999999999999986 58
Q ss_pred CcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHH-hcccc-cccceeEEEEeCCCcccCC-CcHHHHHHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNIL-RHSII-KMEAINLLILDECHHAVKK-HPYSLVMSEFY 452 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L-~~~~l-~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~ 452 (1931)
+.+..+.|+..... ....+.... ...+|+++||+++.... ....+ ...++++|||||||++... +.|+.....+.
T Consensus 76 i~~~~l~~~~~~~~-~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 76 IPATFLNSSQSKEQ-QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CcEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 88888887755332 122233332 35899999999976422 11112 5678999999999999753 45665544432
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
.........++++||||+.. .. ...+...++ +..|......++....
T Consensus 155 ~l~~~~~~~~~l~lTAT~~~--------~~---~~di~~~l~---------------l~~~~~~~~s~~r~nl------- 201 (470)
T TIGR00614 155 SLKQKFPNVPIMALTATASP--------SV---REDILRQLN---------------LKNPQIFCTSFDRPNL------- 201 (470)
T ss_pred HHHHHcCCCceEEEecCCCH--------HH---HHHHHHHcC---------------CCCCcEEeCCCCCCCc-------
Confidence 22111223678999999863 00 011111111 0011100000000000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
.+.
T Consensus 202 -------------------------------------~~~---------------------------------------- 204 (470)
T TIGR00614 202 -------------------------------------YYE---------------------------------------- 204 (470)
T ss_pred -------------------------------------EEE----------------------------------------
Confidence 000
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
T Consensus 205 -------------------------------------------------------------------------------- 204 (470)
T TIGR00614 205 -------------------------------------------------------------------------------- 204 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQET 772 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~ 772 (1931)
+ ......++..+.+.+... .++.++||||+++..++.+++.|.. .++++..+|| +|++.+|.++
T Consensus 205 ----v-~~~~~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~----~g~~~~~~H~-----~l~~~eR~~i 268 (470)
T TIGR00614 205 ----V-RRKTPKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQN----LGIAAGAYHA-----GLEISARDDV 268 (470)
T ss_pred ----E-EeCCccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHh----cCCCeeEeeC-----CCCHHHHHHH
Confidence 0 000001233344444321 2456789999999999999999988 6889999999 9999999999
Q ss_pred HHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 773 l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
+++|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|.. ++++....
T Consensus 269 ~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 269 HHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred HHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 9999999999999999999999999999999999999999999999999999866 45554433
No 44
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=8.7e-36 Score=343.66 Aligned_cols=208 Identities=37% Similarity=0.500 Sum_probs=181.3
Q ss_pred HHHHcCCCcCCHHHHHHHhcCCCCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHH
Q 000174 1595 LEDALKIKFKDRGLLVEAITHASRPSS---GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFA 1671 (1931)
Q Consensus 1595 le~~lgy~F~~~~LL~~AlTH~S~~~~---~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La 1671 (1931)
||++|||+|+|+.||.+||||+||... ...+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999998643 45699999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeec
Q 000174 1672 RVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQ 1751 (1931)
Q Consensus 1672 ~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~ 1751 (1931)
.+|.++||+++|+.++.... ......+|+++|+|||+|||||+|+|+ +.+++|+.
T Consensus 81 ~~a~~~gl~~~i~~~~~~~~-----------------------~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~ 135 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEEK-----------------------SGGRRRESILADAFEALIGAIYLDSGL--EAARKFIL 135 (220)
T ss_pred HHHHHCCcHHHhccCchHhh-----------------------cCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHH
Confidence 99999999999998765321 112456999999999999999999994 46778887
Q ss_pred cCCCCCCCC---CCCCCCChHHHHHHHHhhcCC-ceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHH
Q 000174 1752 PLLDPMVTP---ETLPMHPVRELQERCQQQAEG-LEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARN 1822 (1931)
Q Consensus 1752 ~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~~-~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~ 1822 (1931)
.++.|.+.. .....||++.|+|+|++++.. ++|++... | +.|+|.|+++|..+++|.|.|||+||+.||+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~ 215 (220)
T TIGR02191 136 KLLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKA 215 (220)
T ss_pred HHHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHH
Confidence 777776543 235689999999999987764 79987533 2 48999999999999999999999999999999
Q ss_pred HHHHH
Q 000174 1823 ALAVL 1827 (1931)
Q Consensus 1823 AL~~L 1827 (1931)
||+.|
T Consensus 216 Al~~l 220 (220)
T TIGR02191 216 ALEKL 220 (220)
T ss_pred HHHhC
Confidence 99865
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.5e-34 Score=368.03 Aligned_cols=318 Identities=17% Similarity=0.193 Sum_probs=221.8
Q ss_pred cCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 298 KMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
-.|+..+||+|.++|+.++. +|+|+.+|||+|||++|++|++.. ...+|||+|+++|+.+|...+.. .+
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---------~GiTLVISPLiSLmqDQV~~L~~-~G 524 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---------PGITLVISPLVSLIQDQIMNLLQ-AN 524 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---------CCcEEEEeCHHHHHHHHHHHHHh-CC
Confidence 46899999999999999999 999999999999999999998631 35699999999999988777765 58
Q ss_pred CcEEEEeCCCcccccchHHHHhh---cCCccEEEEcHHHHHH--HHhccc--c-cccceeEEEEeCCCcccCC-CcHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQRE---FDTKQVLVMTAQILLN--ILRHSI--I-KMEAINLLILDECHHAVKK-HPYSLV 447 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~---~~~~~IlV~Tpq~L~d--~L~~~~--l-~l~~i~lLV~DEaH~~~~~-~~~~~i 447 (1931)
+++..+.|++..... ...+... ....+||++||++|.. .+.+.. + ....+.+|||||||++... |.|+..
T Consensus 525 I~Aa~L~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpd 603 (1195)
T PLN03137 525 IPAASLSAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPD 603 (1195)
T ss_pred CeEEEEECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHH
Confidence 888889888764321 1222222 2468999999999862 122111 1 2345899999999999863 456665
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhh
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 527 (1931)
.+.+-.........++++||||... .....+...-...+..++. ....+|......
T Consensus 604 Yr~L~~Lr~~fp~vPilALTATAT~--------~V~eDI~~~L~l~~~~vfr--------~Sf~RpNL~y~V-------- 659 (1195)
T PLN03137 604 YQGLGILKQKFPNIPVLALTATATA--------SVKEDVVQALGLVNCVVFR--------QSFNRPNLWYSV-------- 659 (1195)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCH--------HHHHHHHHHcCCCCcEEee--------cccCccceEEEE--------
Confidence 5443211111123568899999652 1111111110000000000 000011100000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
.
T Consensus 660 ----------------------------------------------v--------------------------------- 660 (1195)
T PLN03137 660 ----------------------------------------------V--------------------------------- 660 (1195)
T ss_pred ----------------------------------------------e---------------------------------
Confidence 0
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
T Consensus 661 -------------------------------------------------------------------------------- 660 (1195)
T PLN03137 661 -------------------------------------------------------------------------------- 660 (1195)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHH
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~ 767 (1931)
. .....+..+.+++... ..+.++||||.++..++.|++.|.. .++++..+|| +|++.
T Consensus 661 -----------~-k~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~----~Gika~~YHA-----GLs~e 717 (1195)
T PLN03137 661 -----------P-KTKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQE----FGHKAAFYHG-----SMDPA 717 (1195)
T ss_pred -----------c-cchhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHH----CCCCeeeeeC-----CCCHH
Confidence 0 0000111222333221 1245799999999999999999987 6899999999 99999
Q ss_pred HHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEE
Q 000174 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMI 832 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv 832 (1931)
+|..++++|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+|||||.|.. ++++.
T Consensus 718 eR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 718 QRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999976 44443
No 46
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=2.8e-34 Score=338.66 Aligned_cols=343 Identities=18% Similarity=0.245 Sum_probs=264.2
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
+++..........|...+|..|+++|..|||.++. -|.||.+..|+|||++|..++.+-+.. ......++||+|||
T Consensus 27 fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~---~~~~~q~~Iv~PTR 103 (980)
T KOG4284|consen 27 FEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS---RSSHIQKVIVTPTR 103 (980)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc---ccCcceeEEEecch
Confidence 34444443445778888999999999999999998 899999999999999999877654442 34567899999999
Q ss_pred hHHHHHHHHHHHH----cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 362 PLVYQQAEVIREQ----TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 362 ~Lv~Q~~~~l~~~----~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
+++.|+.+.+.+. .|+++.++.||..... -...++.++|+|+|||++..++..+.+.++.++|+|+||||.
T Consensus 104 EiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~-----d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 104 EIAVQIKETVRKVAPSFTGARCSVFIGGTAHKL-----DLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADK 178 (980)
T ss_pred hhhhHHHHHHHHhcccccCcceEEEecCchhhh-----hhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHh
Confidence 9999999999874 4899999999986532 122347889999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.....|...+..++..+|.. .+++.+|||-.. .|..+ +.+++..|..+.
T Consensus 179 L~~t~sfq~~In~ii~slP~~--rQv~a~SATYp~------------nLdn~----------------Lsk~mrdp~lVr 228 (980)
T KOG4284|consen 179 LMDTESFQDDINIIINSLPQI--RQVAAFSATYPR------------NLDNL----------------LSKFMRDPALVR 228 (980)
T ss_pred hhchhhHHHHHHHHHHhcchh--heeeEEeccCch------------hHHHH----------------HHHHhcccceee
Confidence 999779999999999988765 789999999432 11111 123333333221
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
..-+.. +++|.
T Consensus 229 ~n~~d~------------------------------~L~Gi--------------------------------------- 239 (980)
T KOG4284|consen 229 FNADDV------------------------------QLFGI--------------------------------------- 239 (980)
T ss_pred cccCCc------------------------------eeech---------------------------------------
Confidence 100000 00000
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
.++ ...+++ . ...++
T Consensus 240 --kQy-------------------------------v~~~~s-----~--------------------nnsve------- 254 (980)
T KOG4284|consen 240 --KQY-------------------------------VVAKCS-----P--------------------NNSVE------- 254 (980)
T ss_pred --hhe-------------------------------eeeccC-----C--------------------cchHH-------
Confidence 000 000000 0 00000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
..-.|++.|-+++... +-.++||||.....|+-++..|+. .|+.+.+|.|
T Consensus 255 -----------------------emrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~s----sG~d~~~ISg 304 (980)
T KOG4284|consen 255 -----------------------EMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKS----SGLDVTFISG 304 (980)
T ss_pred -----------------------HHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhc----cCCCeEEecc
Confidence 0113666666666554 456899999999999999999998 7999999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
.|+|.+|..+++.+|.-.++|||+||..+||||-++||+|||.|+|.+-.+|.||+|||||.|+.++.++
T Consensus 305 -----aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT 374 (980)
T KOG4284|consen 305 -----AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVT 374 (980)
T ss_pred -----ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999965554
No 47
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=364.45 Aligned_cols=342 Identities=23% Similarity=0.311 Sum_probs=266.3
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~L 357 (1931)
.+|...+........++++++.+||++|.+|||.++. +++|..+.||||||+.|++|+..++...+ ..+.++.+|||
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 4455555555566778999999999999999999999 99999999999999999999876655433 24678999999
Q ss_pred eCChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc---ccccceeEEE
Q 000174 358 VPKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI---IKMEAINLLI 431 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~---l~l~~i~lLV 431 (1931)
+||++|+.|+.+.++.+ +++++..++|+... ..+...+..++.|+||||++..|.+.... ..+.++.++|
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~----~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGI----SQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccH----HHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 99999999999998876 48999999998764 34455556789999999999999885533 3567777999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
+||||+|. ++.|......++..... ..+.+++|||-.+ .+..|. .+...
T Consensus 521 ~deaDrmf-dmgfePq~~~Ii~nlrp--drQtvlfSatfpr------------~m~~la----------------~~vl~ 569 (997)
T KOG0334|consen 521 LDEADRMF-DMGFEPQITRILQNLRP--DRQTVLFSATFPR------------SMEALA----------------RKVLK 569 (997)
T ss_pred echhhhhh-eeccCcccchHHhhcch--hhhhhhhhhhhhH------------HHHHHH----------------HHhhc
Confidence 99999999 46776655446554432 3678888998432 122211 13334
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
+|.++++.+.....
T Consensus 570 ~Pveiiv~~~svV~------------------------------------------------------------------ 583 (997)
T KOG0334|consen 570 KPVEIIVGGRSVVC------------------------------------------------------------------ 583 (997)
T ss_pred CCeeEEEccceeEe------------------------------------------------------------------
Confidence 66664443221000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
+ .
T Consensus 584 ---------------------k----------------------~----------------------------------- 585 (997)
T KOG0334|consen 584 ---------------------K----------------------E----------------------------------- 585 (997)
T ss_pred ---------------------c----------------------c-----------------------------------
Confidence 0 0
Q ss_pred cccccccccccccCCCchhhhhhhccc-CCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVA-DGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV 750 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~-~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~ 750 (1931)
+.+.+. ....+.|+.+|+++|..+. .+.++||||.....|+.|.+-|.+ .++
T Consensus 586 ---------------------V~q~v~V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~L~~----ag~ 638 (997)
T KOG0334|consen 586 ---------------------VTQVVRVCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRDLQK----AGY 638 (997)
T ss_pred ---------------------ceEEEEEecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHHHHh----cCc
Confidence 000000 0124579999999999873 378999999999999999999987 689
Q ss_pred eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--E
Q 000174 751 KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--Y 828 (1931)
Q Consensus 751 ~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ 828 (1931)
.+..+|| +.++.+|..+++.||+|.+++||||+|+++|||+.+..+|||||.|....+|+||.|||||.|.+ .
T Consensus 639 ~~~slHG-----gv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~A 713 (997)
T KOG0334|consen 639 NCDSLHG-----GVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAA 713 (997)
T ss_pred chhhhcC-----CCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCcccee
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998877 3
Q ss_pred EEEEe
Q 000174 829 ILMIE 833 (1931)
Q Consensus 829 ivlv~ 833 (1931)
+.|+.
T Consensus 714 vtFi~ 718 (997)
T KOG0334|consen 714 VTFIT 718 (997)
T ss_pred EEEeC
Confidence 44444
No 48
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.2e-33 Score=369.43 Aligned_cols=407 Identities=18% Similarity=0.185 Sum_probs=240.1
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
..|.|||..++..++. .++|+++++|+|||+.+++.+.+++. .+...++|||||+ .|+.||..++.+.+++.
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~----~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~ 225 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL----TGRAERVLILVPE-TLQHQWLVEMLRRFNLR 225 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH----cCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC
Confidence 6799999999988766 57999999999999999999887765 2445689999997 89999999999999988
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHh-cccccccceeEEEEeCCCcccCC----C-cHHHHHHHHH
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR-HSIIKMEAINLLILDECHHAVKK----H-PYSLVMSEFY 452 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~-~~~l~l~~i~lLV~DEaH~~~~~----~-~~~~im~~~~ 452 (1931)
+.++.++......... ...+...+++|+|++.+...-. ...+.-..|++||+|||||+... . .|. .+..+.
T Consensus 226 ~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~-~v~~La 302 (956)
T PRK04914 226 FSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ-VVEQLA 302 (956)
T ss_pred eEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH-HHHHHh
Confidence 8887665432211100 0123467899999999875221 11233458999999999999832 1 122 222232
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhh-hC-CCCceeEEE--eccchhhhH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEK-HV-PMPSEVVVE--YDKAASLWS 528 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~-~~-~~p~e~~~~--y~~~~~~~~ 528 (1931)
. ..+++|+|||||.+.+. ..+..+-.++++..+.. ...+.. .. ..|.-..+. .........
T Consensus 303 ~-----~~~~~LLLTATP~q~~~--------~e~falL~lLdP~~f~~--~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~ 367 (956)
T PRK04914 303 E-----VIPGVLLLTATPEQLGQ--------ESHFARLRLLDPDRFHD--YEAFVEEQQQYRPVADAVQALLAGEKLSDD 367 (956)
T ss_pred h-----ccCCEEEEEcCcccCCc--------HHHHHhhhhhCCCcCCC--HHHHHHHHHhhHHHHHHHHHHhcCCcCCHH
Confidence 2 24789999999996332 23344446666655422 222211 00 000000000 000000000
Q ss_pred HHHHHHHHHH--HHHHHHh---------------------hhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHH
Q 000174 529 LHEQLKQMEV--AVEEAAQ---------------------SSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL 585 (1931)
Q Consensus 529 l~~~i~~l~~--~~~~~~~---------------------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l 585 (1931)
..+.+..+.. ...+.+. ..+......+.+.| ..+.+...|......-.+
T Consensus 368 ~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR--------~~v~~fp~R~~~~~~l~~ 439 (956)
T PRK04914 368 ALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTR--------AAVKGFPKRELHPIPLPL 439 (956)
T ss_pred HHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccH--------HhhcCCCcCceeEeecCC
Confidence 0011111100 0000000 00000000000000 000011111110000000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccc
Q 000174 586 IQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFV 665 (1931)
Q Consensus 586 ~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 665 (1931)
.. .|...... ........ ..|-..+....
T Consensus 440 ~~-------------~y~~~~~~-~~~~~~~~-------------~l~pe~~~~~~------------------------ 468 (956)
T PRK04914 440 PE-------------QYQTAIKV-SLEARARD-------------MLYPEQIYQEF------------------------ 468 (956)
T ss_pred CH-------------HHHHHHHH-hHHHHHHh-------------hcCHHHHHHHH------------------------
Confidence 00 01000000 00000000 00000000000
Q ss_pred cCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC
Q 000174 666 EGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP 745 (1931)
Q Consensus 666 ~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 745 (1931)
.........++|+..|+++|+.. ...|+||||+++.++..|.+.|+..
T Consensus 469 ----------------------------~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~- 516 (956)
T PRK04914 469 ----------------------------EDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALRER- 516 (956)
T ss_pred ----------------------------hhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhc-
Confidence 00001124568999999999764 3679999999999999999999642
Q ss_pred CCCCceeEEEEccCCCccccHHHHHHHHHHhhcC--CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 746 SLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG--RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 746 ~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G--~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.|+++..+|| +|++.+|+++++.|+++ .++|||||++++||+|++.|++||+||+||||..|+||+||++|
T Consensus 517 --~Gi~~~~ihG-----~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R 589 (956)
T PRK04914 517 --EGIRAAVFHE-----GMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR 589 (956)
T ss_pred --cCeeEEEEEC-----CCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc
Confidence 5899999999 99999999999999974 69999999999999999999999999999999999999999999
Q ss_pred CCCcEE
Q 000174 824 PGSDYI 829 (1931)
Q Consensus 824 ~Gs~~i 829 (1931)
.|++..
T Consensus 590 iGQ~~~ 595 (956)
T PRK04914 590 IGQKHD 595 (956)
T ss_pred CCCCce
Confidence 999833
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.8e-33 Score=363.59 Aligned_cols=317 Identities=15% Similarity=0.204 Sum_probs=224.6
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
.|+..+||+|.++++.++. +|+++.+|||+|||++|++|+... ...+|||+|+++|+.||.+.++. .++
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---------~g~tlVisPl~sL~~dqv~~l~~-~gi 90 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---------DGLTLVVSPLISLMKDQVDQLLA-NGV 90 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---------CCCEEEEecHHHHHHHHHHHHHH-cCC
Confidence 6899999999999999998 999999999999999999997631 34699999999999999999986 478
Q ss_pred cEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHHhhc
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~~~~ 455 (1931)
.+..+.+....... ...+.... ...+++++||++|........+...++++|||||||++... +.|+..+..+-...
T Consensus 91 ~~~~~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 91 AAACLNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred cEEEEcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 88877776543321 12222222 35789999999987432222244567999999999999853 44555444332221
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
......++++||||+... ....+ ...+. ...|......+.....
T Consensus 170 ~~~p~~~~v~lTAT~~~~--------~~~di---~~~l~---------------l~~~~~~~~~~~r~nl---------- 213 (607)
T PRK11057 170 QRFPTLPFMALTATADDT--------TRQDI---VRLLG---------------LNDPLIQISSFDRPNI---------- 213 (607)
T ss_pred HhCCCCcEEEEecCCChh--------HHHHH---HHHhC---------------CCCeEEEECCCCCCcc----------
Confidence 112236689999997631 00011 11110 0001000000000000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
.+.+
T Consensus 214 ----------------------------------~~~v------------------------------------------ 217 (607)
T PRK11057 214 ----------------------------------RYTL------------------------------------------ 217 (607)
T ss_pred ----------------------------------eeee------------------------------------------
Confidence 0000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
T Consensus 218 -------------------------------------------------------------------------------- 217 (607)
T PRK11057 218 -------------------------------------------------------------------------------- 217 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
.....+...|+..+.. ..+.++||||+++..++.+++.|.. .++++..+|| +|++.+|.+++++
T Consensus 218 ----~~~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~----~g~~v~~~Ha-----~l~~~~R~~i~~~ 281 (607)
T PRK11057 218 ----VEKFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS----RGISAAAYHA-----GLDNDVRADVQEA 281 (607)
T ss_pred ----eeccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEecC-----CCCHHHHHHHHHH
Confidence 0000122233333332 2457899999999999999999998 6889999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
|+.|+++|||||+++++|||+|+|++||+||+|.++.+|+||+|||||.|.. +++++..
T Consensus 282 F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~ 342 (607)
T PRK11057 282 FQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP 342 (607)
T ss_pred HHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCH
Confidence 9999999999999999999999999999999999999999999999999865 5555543
No 50
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2e-33 Score=341.47 Aligned_cols=441 Identities=18% Similarity=0.170 Sum_probs=268.9
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..+..|.+||+++++|+.+ ...|+.++||+|||++.+..+..+...- .--+++|||||. .++.||.+++..
T Consensus 201 ~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~---k~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 201 FIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSG---KLTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcc---cccCceEEEccH-HHHHHHHHHHHH
Confidence 3456899999999999976 5689999999999987776555444321 112679999995 788999999999
Q ss_pred Hc-CCcEEEEeCCCccc----ccchHHHHh-----hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 374 QT-GYVVGHYCGEMGQD----FWDAQRWQR-----EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 374 ~~-~l~v~~~~G~~~~~----~~~~~~w~~-----~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
|. .++|.++||..... ......|.. ......|+|+|+..+. +....+.-..|+++|+||+|+++++++
T Consensus 277 w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpns 354 (923)
T KOG0387|consen 277 WWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPNS 354 (923)
T ss_pred hCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCcc
Confidence 86 68999999875421 111222333 2347889999999887 333445667899999999999998753
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEec
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYD 521 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~ 521 (1931)
.+...+.+...+++|+||+||++ ++|..|+.++| .+++- .....+......|...--.-.
T Consensus 355 ------~islackki~T~~RiILSGTPiQ-----------NnL~ELwsLfD-Fv~PG~Lgt~~~F~~~f~~pI~~GgyaN 416 (923)
T KOG0387|consen 355 ------KISLACKKIRTVHRIILSGTPIQ-----------NNLTELWSLFD-FVFPGKLGTLPVFQQNFEHPINRGGYAN 416 (923)
T ss_pred ------HHHHHHHhccccceEEeeCcccc-----------chHHHHHHHhh-hccCCcccchHHHHhhhhhheeccccCC
Confidence 34444444556889999999996 36778887776 22211 111222222222211111001
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhH-HHHHHHHHHHHHHHHHh
Q 000174 522 KAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAA-NLIQKLRAINYALGELG 600 (1931)
Q Consensus 522 ~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~-~l~~~~~~~~~~l~~lg 600 (1931)
.++ .+....+.++......+.++.+ +|.+.++.. .|+.+-..+.+|-..-.
T Consensus 417 As~---------~qv~~aykca~~Lr~lI~PylL-------------------RR~K~dv~~~~Lp~K~E~VlfC~LT~~ 468 (923)
T KOG0387|consen 417 ASP---------RQVQTAYKCAVALRDLISPYLL-------------------RRMKSDVKGLKLPKKEEIVLFCRLTKL 468 (923)
T ss_pred CCH---------HHHHHHHHHHHHHHHHhHHHHH-------------------HHHHHHhhhccCCCccceEEEEeccHH
Confidence 111 1111122222211111111111 111111111 12222222222211111
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
| .+..+.|+..-+-....++..........++++|+ |+++..+.-.+.
T Consensus 469 Q---R~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICn-----------------------------HPdll~~~~~~~ 516 (923)
T KOG0387|consen 469 Q---RRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICN-----------------------------HPDLLDRRDEDE 516 (923)
T ss_pred H---HHHHHHHhhhHHHHHHHcCCccceechHHHHhhcC-----------------------------CcccccCccccc
Confidence 1 11111122211111111111111222334444444 222222110000
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
-.+ .+ .......+.|++.|.++|..+ ...+.|+|+|.+++.+.++|..+|... .++.+..|.|
T Consensus 517 ---~~~--~D-----~~g~~k~sGKm~vl~~ll~~W-~kqg~rvllFsqs~~mLdilE~fL~~~---~~ysylRmDG--- 579 (923)
T KOG0387|consen 517 ---KQG--PD-----YEGDPKRSGKMKVLAKLLKDW-KKQGDRVLLFSQSRQMLDILESFLRRA---KGYSYLRMDG--- 579 (923)
T ss_pred ---ccC--CC-----cCCChhhcchHHHHHHHHHHH-hhCCCEEEEehhHHHHHHHHHHHHHhc---CCceEEEecC---
Confidence 000 00 002335688999999999998 456779999999999999999999853 7899999999
Q ss_pred CccccHHHHHHHHHHhhcCCce--EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-----EEEEEe
Q 000174 761 SQEMRTFQMQETIAKFRDGRVT--LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-----YILMIE 833 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~--vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-----~ivlv~ 833 (1931)
..+...|+.++++|++++.- +|++|.|++-|+|+..+|.||.|||.|||....|++-||+|.||+ |.+| .
T Consensus 580 --tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~-t 656 (923)
T KOG0387|consen 580 --TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM-T 656 (923)
T ss_pred --CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe-c
Confidence 88999999999999977654 889999999999999999999999999999999999999999998 4444 3
Q ss_pred cCChhHHHHH
Q 000174 834 RGNLSHATFL 843 (1931)
Q Consensus 834 ~~~~~~~~~l 843 (1931)
.+..++..+.
T Consensus 657 ~gTIEEkiY~ 666 (923)
T KOG0387|consen 657 AGTIEEKIYH 666 (923)
T ss_pred CCcHHHHHHH
Confidence 4444443333
No 51
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-32 Score=347.08 Aligned_cols=319 Identities=18% Similarity=0.213 Sum_probs=223.4
Q ss_pred CCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 301 EEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
-..|||||.+++..+.. ++.||++|||+|||++++..+..+ +.++|||||+.+|+.||.++|.+++.
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 36899999999999885 368999999999999999876543 34599999999999999999999874
Q ss_pred ---CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--------ccccccceeEEEEeCCCcccCCCcHH
Q 000174 377 ---YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--------SIIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 377 ---l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--------~~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
..+..++|+... .+ .....|+|+|++++.....+ ..+.-..|++||+|||||+... .|+
T Consensus 324 l~~~~I~~~tg~~k~------~~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~fr 393 (732)
T TIGR00603 324 IDDSQICRFTSDAKE------RF---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MFR 393 (732)
T ss_pred CCCceEEEEecCccc------cc---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HHH
Confidence 456667765322 11 13478999999998643221 1233467999999999999763 566
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccch
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~ 524 (1931)
.++..+. .+.+|||||||.+.++. +..|..++...++.....+.+. .++..+....+.+....
T Consensus 394 ~il~~l~-------a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~ 457 (732)
T TIGR00603 394 RVLTIVQ-------AHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTP 457 (732)
T ss_pred HHHHhcC-------cCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCH
Confidence 5554331 25689999999976542 2345666777777664433332 34443332222221110
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
. . ...
T Consensus 458 ~---~----------~~~-------------------------------------------------------------- 462 (732)
T TIGR00603 458 E---F----------YRE-------------------------------------------------------------- 462 (732)
T ss_pred H---H----------HHH--------------------------------------------------------------
Confidence 0 0 000
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
++.. ... ..++ +
T Consensus 463 ------yl~~---~~~----------~k~~------l------------------------------------------- 474 (732)
T TIGR00603 463 ------YLRE---NSR----------KRML------L------------------------------------------- 474 (732)
T ss_pred ------HHHh---cch----------hhhH------H-------------------------------------------
Confidence 0000 000 0000 0
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
......|+..+..++..+ ...+.++||||.+...+..+++.|. +..|+| .+
T Consensus 475 --------------~~~np~K~~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L~---------~~~I~G-----~t 525 (732)
T TIGR00603 475 --------------YVMNPNKFRACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKLG---------KPFIYG-----PT 525 (732)
T ss_pred --------------hhhChHHHHHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHcC---------CceEEC-----CC
Confidence 000124666666666554 2467899999999998888887763 346899 99
Q ss_pred cHHHHHHHHHHhhcC-CceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCC
Q 000174 765 RTFQMQETIAKFRDG-RVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G-~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs 826 (1931)
++.+|++++++|++| .+++||+|+|+.+|||+|+|++||+++.|. |...|+||+||+.|.+.
T Consensus 526 s~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 526 SQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 999999999999965 889999999999999999999999999985 99999999999999763
No 52
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.8e-32 Score=370.44 Aligned_cols=342 Identities=18% Similarity=0.177 Sum_probs=227.1
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc---CCCcEEEEEeCChhHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ---NKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~---~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.-+.++..|||+|.++++.+++ +|+|+++|||||||++|++|+.+.+...... ..+.++|+|+||++|+.|+++.+
T Consensus 25 ~~~~~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L 104 (876)
T PRK13767 25 WFKEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNL 104 (876)
T ss_pred HHHHccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHH
Confidence 3334678899999999999988 9999999999999999999988766543211 23567999999999999998865
Q ss_pred HH-------Hc--------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc--cccceeEEEEeC
Q 000174 372 RE-------QT--------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII--KMEAINLLILDE 434 (1931)
Q Consensus 372 ~~-------~~--------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l--~l~~i~lLV~DE 434 (1931)
.. +. ++++.+.+|+..... ........++|+|+||++|..++....+ .+.++++|||||
T Consensus 105 ~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~----r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 105 EEPLTEIREIAKERGEELPEIRVAIRTGDTSSYE----KQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred HHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHH----HHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEec
Confidence 52 21 567888999875432 1122235789999999999887765433 478999999999
Q ss_pred CCcccCCCc---HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 435 CHHAVKKHP---YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 435 aH~~~~~~~---~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
||++.+... +...+..+.... ...++++|||||+.+. ..+...+...... ...
T Consensus 181 ~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~-------------~~va~~L~~~~~~---------~~~ 236 (876)
T PRK13767 181 IHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPL-------------EEVAKFLVGYEDD---------GEP 236 (876)
T ss_pred hhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCH-------------HHHHHHhcCcccc---------CCC
Confidence 999986321 222333333332 1348899999997631 1111112110000 001
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
.+... +...... . + .+ ... . . ...+
T Consensus 237 r~~~i-v~~~~~k---~-------~-----------------~i----------------~v~-~-p---~~~l------ 261 (876)
T PRK13767 237 RDCEI-VDARFVK---P-------F-----------------DI----------------KVI-S-P---VDDL------ 261 (876)
T ss_pred CceEE-EccCCCc---c-------c-----------------eE----------------EEe-c-c---Cccc------
Confidence 11111 0000000 0 0 00 000 0 0 0000
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
T Consensus 262 -------------------------------------------------------------------------------- 261 (876)
T PRK13767 262 -------------------------------------------------------------------------------- 261 (876)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCCchhhhhhhcccCCCC-CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC--CC
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVADGKV-TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS--LS 748 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~-s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~--l~ 748 (1931)
... ..... ......|.+++. .+.++||||+++..|+.++..|..... ..
T Consensus 262 -~~~----------------------~~~~~~~~l~~~L~~~i~-----~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~ 313 (876)
T PRK13767 262 -IHT----------------------PAEEISEALYETLHELIK-----EHRTTLIFTNTRSGAERVLYNLRKRFPEEYD 313 (876)
T ss_pred -ccc----------------------ccchhHHHHHHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHHhchhhcc
Confidence 000 00000 001122223332 246799999999999999999986311 12
Q ss_pred CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCC---
Q 000174 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG--- 825 (1931)
Q Consensus 749 ~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~G--- 825 (1931)
+..+..+|| ++++.+|..++++|++|+++|||||+++++|||+|++++||+||.|.++.+|+||+|||||.+
T Consensus 314 ~~~i~~hHg-----~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~ 388 (876)
T PRK13767 314 EDNIGAHHS-----SLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEV 388 (876)
T ss_pred ccceeeeeC-----CCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCC
Confidence 367889999 999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CcEEEEEe
Q 000174 826 SDYILMIE 833 (1931)
Q Consensus 826 s~~ivlv~ 833 (1931)
+++++++.
T Consensus 389 ~~g~ii~~ 396 (876)
T PRK13767 389 SKGRIIVV 396 (876)
T ss_pred CcEEEEEc
Confidence 34555553
No 53
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.2e-32 Score=357.32 Aligned_cols=316 Identities=18% Similarity=0.232 Sum_probs=228.6
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
.|+.++||+|.++++.++. +|+++++|||+|||++|++|+.. ....++||+|+++|+.||.+.++. .++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---------~~g~~lVisPl~sL~~dq~~~l~~-~gi 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---------LKGLTVVISPLISLMKDQVDQLRA-AGV 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHH-cCC
Confidence 7899999999999999998 99999999999999999998752 134689999999999999999987 588
Q ss_pred cEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHHhhc
Q 000174 378 VVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~~~~ 455 (1931)
.+..++|+...+.. ...+... ....+|+++||++|....-...+...++++|||||||++... +.|+..+..+....
T Consensus 79 ~~~~~~s~~~~~~~-~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 79 AAAYLNSTLSAKEQ-QDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred cEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 88888888764432 2223333 247899999999997544334456778999999999999752 45555544433222
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
.......+++||||+.. ... ..+...+. ...+......+...
T Consensus 158 ~~~~~~~vi~lTAT~~~--------~~~---~~i~~~l~---------------~~~~~~~~~~~~r~------------ 199 (591)
T TIGR01389 158 ERFPQVPRIALTATADA--------ETR---QDIRELLR---------------LADANEFITSFDRP------------ 199 (591)
T ss_pred HhCCCCCEEEEEeCCCH--------HHH---HHHHHHcC---------------CCCCCeEecCCCCC------------
Confidence 11122339999999753 000 11111111 00000000000000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
T Consensus 200 -------------------------------------------------------------------------------- 199 (591)
T TIGR01389 200 -------------------------------------------------------------------------------- 199 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
.+.-
T Consensus 200 -------------------------------------------------------nl~~--------------------- 203 (591)
T TIGR01389 200 -------------------------------------------------------NLRF--------------------- 203 (591)
T ss_pred -------------------------------------------------------CcEE---------------------
Confidence 0000
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
.+ .....+...+.+.|... .+.++||||+++..++.+++.|.. .++++..+|| +|+..+|..++++
T Consensus 204 ~v--~~~~~~~~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~----~g~~~~~~H~-----~l~~~~R~~i~~~ 269 (591)
T TIGR01389 204 SV--VKKNNKQKFLLDYLKKH---RGQSGIIYASSRKKVEELAERLES----QGISALAYHA-----GLSNKVRAENQED 269 (591)
T ss_pred EE--EeCCCHHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEEEC-----CCCHHHHHHHHHH
Confidence 00 00012334455555443 256899999999999999999987 6889999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEe
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIE 833 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~ 833 (1931)
|++|+++|||||+++++|||+|++++||+||+|.|+.+|+|++|||||.|.. ++++..
T Consensus 270 F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~ 329 (591)
T TIGR01389 270 FLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYS 329 (591)
T ss_pred HHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecC
Confidence 9999999999999999999999999999999999999999999999999865 444443
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.7e-32 Score=361.19 Aligned_cols=329 Identities=23% Similarity=0.247 Sum_probs=232.7
Q ss_pred cchhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 291 KKSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 291 ~~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
...+.+.+.|+.+|+|+|.++++. ++. +|+|+++|||||||++|.+++.+.+. .+.++|||+|+++||.|+.
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~------~~~kal~i~P~raLa~q~~ 84 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA------RGGKALYIVPLRALASEKF 84 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh------cCCcEEEEeChHHHHHHHH
Confidence 344778889999999999999998 444 89999999999999999999887764 2467999999999999999
Q ss_pred HHHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 369 EVIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 369 ~~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
+.++.+ +++++..++|+...+. . .+..++|+|+||+++..++.++...+.++++||+||+|.+.+. .+..
T Consensus 85 ~~~~~~~~~g~~v~~~tGd~~~~~----~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~-~rg~ 156 (737)
T PRK02362 85 EEFERFEELGVRVGISTGDYDSRD----E---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA-NRGP 156 (737)
T ss_pred HHHHHhhcCCCEEEEEeCCcCccc----c---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCC-cchH
Confidence 999975 3889999999865421 1 2356899999999999888876667889999999999999763 4444
Q ss_pred HHHHHHhhcC-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 447 VMSEFYHTTS-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 447 im~~~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
.+..++.... ....+|+++||||+.+. ..+...++...+.. .+.+.|....+.+.....
T Consensus 157 ~le~il~rl~~~~~~~qii~lSATl~n~-------------~~la~wl~~~~~~~-------~~rpv~l~~~v~~~~~~~ 216 (737)
T PRK02362 157 TLEVTLAKLRRLNPDLQVVALSATIGNA-------------DELADWLDAELVDS-------EWRPIDLREGVFYGGAIH 216 (737)
T ss_pred HHHHHHHHHHhcCCCCcEEEEcccCCCH-------------HHHHHHhCCCcccC-------CCCCCCCeeeEecCCeec
Confidence 4433333221 12348999999998641 23333444322111 011111111111100000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
+ ..+
T Consensus 217 -----------------------------~------------------~~~----------------------------- 220 (737)
T PRK02362 217 -----------------------------F------------------DDS----------------------------- 220 (737)
T ss_pred -----------------------------c------------------ccc-----------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
...
T Consensus 221 --------------------------------------------------------------------~~~--------- 223 (737)
T PRK02362 221 --------------------------------------------------------------------QRE--------- 223 (737)
T ss_pred --------------------------------------------------------------------ccc---------
Confidence 000
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC--C----------------
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS--L---------------- 747 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~--l---------------- 747 (1931)
+.......++..+.+.+. .+.++||||+++..|..++..|..... +
T Consensus 224 -----------~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~ 287 (737)
T PRK02362 224 -----------VEVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIR 287 (737)
T ss_pred -----------CCCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 000000122333333332 357899999999999988887764210 0
Q ss_pred --------------CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cC---
Q 000174 748 --------------SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FD--- 806 (1931)
Q Consensus 748 --------------~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD--- 806 (1931)
-...++++|| ++++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||
T Consensus 288 ~~~~~~~~~~L~~~l~~gva~hHa-----gl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~ 362 (737)
T PRK02362 288 EVSDTETSKDLADCVAKGAAFHHA-----GLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA 362 (737)
T ss_pred hccCccccHHHHHHHHhCEEeecC-----CCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC
Confidence 0135788899 999999999999999999999999999999999999999997 88
Q ss_pred --CCCCHHHHHHhhccCCCCCCc
Q 000174 807 --LAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 807 --~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
.|.+..+|+||+|||||.|..
T Consensus 363 g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 363 GMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred CceeCCHHHHHHHhhcCCCCCCC
Confidence 688999999999999998854
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4e-31 Score=339.57 Aligned_cols=325 Identities=18% Similarity=0.219 Sum_probs=220.0
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC--
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY-- 377 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l-- 377 (1931)
...||+||.++++.++. +++|++++||+|||+++..++...+.. .+.++||||||++|+.||.++++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 46899999999999988 789999999999999988766554442 2348999999999999999999987632
Q ss_pred -cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 -VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 -~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
.+..+.|+... + ...+|+|+|||+|.+... ..+.++++||+|||||+... .+..++..+-
T Consensus 187 ~~~~~i~~g~~~-------~----~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~-~~~~il~~~~---- 247 (501)
T PHA02558 187 EAMHKIYSGTAK-------D----TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK-SLTSIITKLD---- 247 (501)
T ss_pred cceeEEecCccc-------C----CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch-hHHHHHHhhh----
Confidence 33344444321 1 357999999999986442 24678999999999999874 5666665432
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
..++++||||||...+. ....+...++...+.+...+.+. .++..+....+....... . ...
T Consensus 248 --~~~~~lGLTATp~~~~~---------~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~--~----~~~ 310 (501)
T PHA02558 248 --NCKFKFGLTGSLRDGKA---------NILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDE--D----RVK 310 (501)
T ss_pred --ccceEEEEeccCCCccc---------cHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHH--H----hhh
Confidence 13679999999965332 11223334454444432222221 111112111111000000 0 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
+ .-+.|.. .+.
T Consensus 311 ~-------------------------------------------------------------~~~~~~~------~~~-- 321 (501)
T PHA02558 311 L-------------------------------------------------------------KGEDYQE------EIK-- 321 (501)
T ss_pred h-------------------------------------------------------------cccchHH------HHH--
Confidence 0 0000000 000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
++ .
T Consensus 322 -----------------~l---~--------------------------------------------------------- 324 (501)
T PHA02558 322 -----------------YI---T--------------------------------------------------------- 324 (501)
T ss_pred -----------------HH---h---------------------------------------------------------
Confidence 00 0
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
....+...+.+++.... ..+.++|||+.++.+++.|++.|.. .++++..+|| ++++.+|..+++.
T Consensus 325 -----~~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~----~g~~v~~i~G-----~~~~~eR~~i~~~ 389 (501)
T PHA02558 325 -----SHTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKK----VYDKVYYVSG-----EVDTEDRNEMKKI 389 (501)
T ss_pred -----ccHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHH----cCCCEEEEeC-----CCCHHHHHHHHHH
Confidence 00012222223332221 2456899999999999999999998 5789999999 9999999999999
Q ss_pred hhcCCceEEEEe-cccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 776 FRDGRVTLLVAT-SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 776 Fr~G~~~vLVaT-dVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++|+..||||| ++++||+|+|++++||.++++.+...|+||+||++|.+..
T Consensus 390 ~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 390 AEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred HhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 999999999999 8999999999999999999999999999999999997643
No 56
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-32 Score=321.50 Aligned_cols=328 Identities=20% Similarity=0.270 Sum_probs=242.6
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEeCChhHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
.+++...+|..|+|+|.++++.++. +++++|+|||||||++|.+||...+.... +...+-+++||+||++|+.|.+.
T Consensus 148 l~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~r 227 (593)
T KOG0344|consen 148 LENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYR 227 (593)
T ss_pred HHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHH
Confidence 3678889999999999999999999 99999999999999999999988877553 12445789999999999999999
Q ss_pred HHHHHc-----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCC
Q 000174 370 VIREQT-----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 370 ~l~~~~-----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
++.++. ++++..+........ +.. ......++|+|.||-++..++..+. +.+..+.++|+||||++.+..
T Consensus 228 e~~k~~~~~~t~~~a~~~~~~~~~~q-k~a--~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~ 304 (593)
T KOG0344|consen 228 EMRKYSIDEGTSLRAAQFSKPAYPSQ-KPA--FLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE 304 (593)
T ss_pred HHHhcCCCCCCchhhhhcccccchhh-ccc--hhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh
Confidence 999865 344444443322111 100 0111367999999999999998875 688999999999999999965
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEecc
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK 522 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 522 (1931)
.|...+..+|..+.. ...++=++|||-.. .+.++.... ...+..+++....
T Consensus 305 ~f~~Qla~I~sac~s-~~i~~a~FSat~~~------------~VEE~~~~i----------------~~~~~~vivg~~~ 355 (593)
T KOG0344|consen 305 FFVEQLADIYSACQS-PDIRVALFSATISV------------YVEEWAELI----------------KSDLKRVIVGLRN 355 (593)
T ss_pred hHHHHHHHHHHHhcC-cchhhhhhhccccH------------HHHHHHHHh----------------hccceeEEEecch
Confidence 788888888887644 33455667777331 111111110 0011111110000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
.. ...
T Consensus 356 sa-----~~~---------------------------------------------------------------------- 360 (593)
T KOG0344|consen 356 SA-----NET---------------------------------------------------------------------- 360 (593)
T ss_pred hH-----hhh----------------------------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
+-+
T Consensus 361 ----V~Q------------------------------------------------------------------------- 363 (593)
T KOG0344|consen 361 ----VDQ------------------------------------------------------------------------- 363 (593)
T ss_pred ----hhh-------------------------------------------------------------------------
Confidence 000
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCc
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~ 762 (1931)
..+--+....|+..+.+++..- -...++||+++...|..|++.|.. +.++.+.++||
T Consensus 364 ------------elvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~----- 420 (593)
T KOG0344|consen 364 ------------ELVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHG----- 420 (593)
T ss_pred ------------hheeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEec-----
Confidence 0000112235666666666542 345799999999999999999963 37899999999
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..++.+|.+++++||.|++.+||||++++||||+.++|+|||||.|.+-.+|+||+||+||+|..
T Consensus 421 e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~ 485 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS 485 (593)
T ss_pred ccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999877
No 57
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-31 Score=348.59 Aligned_cols=304 Identities=20% Similarity=0.267 Sum_probs=212.6
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..++ ++||++|.++++.+.. .|.|++++||||||++|++++...+. .+.+++||+||++|+.|+++
T Consensus 256 ~~l~-f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~Q~~~ 328 (681)
T PRK10917 256 ASLP-FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE------AGYQAALMAPTEILAEQHYE 328 (681)
T ss_pred HhCC-CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHHHHHH
Confidence 3344 4799999999999977 27999999999999999999887664 35689999999999999999
Q ss_pred HHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHH
Q 000174 370 VIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 370 ~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
.+++++ ++++..++|+..... +...+..... .++|+|+||+.+.+ .+.+.++++||+||+|++... ..
T Consensus 329 ~l~~l~~~~~i~v~ll~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~--qr 400 (681)
T PRK10917 329 NLKKLLEPLGIRVALLTGSLKGKE-RREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE--QR 400 (681)
T ss_pred HHHHHHhhcCcEEEEEcCCCCHHH-HHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH--HH
Confidence 999876 689999999976433 2334444433 59999999998753 356789999999999998431 12
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
..+. . ....|++|+|||||.. ....+...-+-.+..+.. + .....|....+.
T Consensus 401 ~~l~---~---~~~~~~iL~~SATp~p------------rtl~~~~~g~~~~s~i~~---~-p~~r~~i~~~~~------ 452 (681)
T PRK10917 401 LALR---E---KGENPHVLVMTATPIP------------RTLAMTAYGDLDVSVIDE---L-PPGRKPITTVVI------ 452 (681)
T ss_pred HHHH---h---cCCCCCEEEEeCCCCH------------HHHHHHHcCCCceEEEec---C-CCCCCCcEEEEe------
Confidence 2211 1 1224889999999973 000111100000000000 0 000000000000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
T Consensus 453 -------------------------------------------------------------------------------- 452 (681)
T PRK10917 453 -------------------------------------------------------------------------------- 452 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
T Consensus 453 -------------------------------------------------------------------------------- 452 (681)
T PRK10917 453 -------------------------------------------------------------------------------- 452 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh--------hHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV--------VAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r--------~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
...+...+++.+.+. ...+.+++|||+.+ ..+..+++.|... +.++++..+||
T Consensus 453 ----------------~~~~~~~~~~~i~~~-~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG 513 (681)
T PRK10917 453 ----------------PDSRRDEVYERIREE-IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHG 513 (681)
T ss_pred ----------------CcccHHHHHHHHHHH-HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeC
Confidence 000011112222211 12356899999853 3456677777653 23578999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|++.+|++++++|++|+++|||||+|+++|||+|++++||+||.|. ...+|.||+||+||.|..
T Consensus 514 -----~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~ 579 (681)
T PRK10917 514 -----RMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQ 579 (681)
T ss_pred -----CCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCc
Confidence 99999999999999999999999999999999999999999999997 688899999999999866
No 58
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=313.35 Aligned_cols=342 Identities=17% Similarity=0.230 Sum_probs=270.8
Q ss_pred CCCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 280 GINQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
...|.+.+.......++.+.+|..|+|+|+..+|.+++ ++++..+-||||||.+|++|+.+.+.... ..+.++++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s--~~g~Ralils 97 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS--QTGLRALILS 97 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc--ccccceeecc
Confidence 35667777777777999999999999999999999999 99999999999999999999998887653 4567899999
Q ss_pred CChhHHHHHHHHHHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|..++++.+ ++++..+++|+... .++|..+-.+++||++||+++......-.+.++.+.+||||||
T Consensus 98 ptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~----eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGTKLRQSLLVGGDSI----EEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred CcHHHHHHHHHHHHHhccccchhhhhhcccchH----HHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 9999999999988874 57888877777653 4678777789999999999999776666688999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCc
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPS 514 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~ 514 (1931)
+++.+ ++|...+.+++...+.. .+.++||||..+ .| .+.. .-...|.
T Consensus 174 drlfe-mgfqeql~e~l~rl~~~--~QTllfSatlp~---------------~l--------------v~fakaGl~~p~ 221 (529)
T KOG0337|consen 174 DRLFE-MGFQEQLHEILSRLPES--RQTLLFSATLPR---------------DL--------------VDFAKAGLVPPV 221 (529)
T ss_pred hHHHh-hhhHHHHHHHHHhCCCc--ceEEEEeccCch---------------hh--------------HHHHHccCCCCc
Confidence 99998 69999999999988765 499999999653 00 0111 1112222
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.+.+..+. .+.
T Consensus 222 lVRldvet-----kis---------------------------------------------------------------- 232 (529)
T KOG0337|consen 222 LVRLDVET-----KIS---------------------------------------------------------------- 232 (529)
T ss_pred eEEeehhh-----hcc----------------------------------------------------------------
Confidence 22111000 000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
+.++.
T Consensus 233 --------------------------------------------e~lk~------------------------------- 237 (529)
T KOG0337|consen 233 --------------------------------------------ELLKV------------------------------- 237 (529)
T ss_pred --------------------------------------------hhhhh-------------------------------
Confidence 00000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.........|...|+.++... ..+.++||||.++..++++..+|.. .++.+..
T Consensus 238 ---------------------~f~~~~~a~K~aaLl~il~~~--~~~~~t~vf~~tk~hve~~~~ll~~----~g~~~s~ 290 (529)
T KOG0337|consen 238 ---------------------RFFRVRKAEKEAALLSILGGR--IKDKQTIVFVATKHHVEYVRGLLRD----FGGEGSD 290 (529)
T ss_pred ---------------------heeeeccHHHHHHHHHHHhcc--ccccceeEEecccchHHHHHHHHHh----cCCCccc
Confidence 000012235777788888764 2356899999999999999999998 6788888
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc---EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD---YILM 831 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~---~ivl 831 (1931)
+.| .+.+.-|..-+.+|+.++.++||.||||+||+|||-.+.|||||.|....-|+||+||++|+|+. |-++
T Consensus 291 iys-----slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V 365 (529)
T KOG0337|consen 291 IYS-----SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLV 365 (529)
T ss_pred ccc-----ccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEE
Confidence 999 99999999999999999999999999999999999999999999999999999999999888765 5555
Q ss_pred EecC
Q 000174 832 IERG 835 (1931)
Q Consensus 832 v~~~ 835 (1931)
+.++
T Consensus 366 ~~~~ 369 (529)
T KOG0337|consen 366 ASTD 369 (529)
T ss_pred eccc
Confidence 5443
No 59
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=6.4e-31 Score=350.03 Aligned_cols=297 Identities=20% Similarity=0.244 Sum_probs=212.7
Q ss_pred CCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.++ +||++|.++++.+++ .|.+++++||+|||.+|++++...+.. +.+++|||||++||.|+++.+
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~------g~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD------GKQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh------CCeEEEEeCcHHHHHHHHHHH
Confidence 455 699999999999976 489999999999999999998776652 468999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
++.+ ++++..++|...... ....+..... .++|||+||..+ ...+.+.++++||+||+|++.. .....
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e-~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv--~~~~~ 592 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKE-QNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGV--KQKEK 592 (926)
T ss_pred HHHhccCCcEEEEEeccccHHH-HHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccch--hHHHH
Confidence 9865 577888888765432 1223333333 589999999644 2446789999999999999743 22222
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHH-HHHhcCCeEEEecchHHHhhhCCCCcee--EEEeccch
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICN-LESKLDSVVCTIKDRKELEKHVPMPSEV--VVEYDKAA 524 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~-Le~~l~~~i~t~~~~~~l~~~~~~p~e~--~~~y~~~~ 524 (1931)
+ ...+ ..+++|+|||||... .+.. +....+..+.. ..|... +..+-.
T Consensus 593 L----~~~~--~~~~vL~~SATpipr-----------tl~~~l~g~~d~s~I~-----------~~p~~R~~V~t~v~-- 642 (926)
T TIGR00580 593 L----KELR--TSVDVLTLSATPIPR-----------TLHMSMSGIRDLSIIA-----------TPPEDRLPVRTFVM-- 642 (926)
T ss_pred H----HhcC--CCCCEEEEecCCCHH-----------HHHHHHhcCCCcEEEe-----------cCCCCccceEEEEE--
Confidence 2 2222 247899999999730 0100 00001100000 000000 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
.
T Consensus 643 ----------------------------------------------------------------------------~--- 643 (926)
T TIGR00580 643 ----------------------------------------------------------------------------E--- 643 (926)
T ss_pred ----------------------------------------------------------------------------e---
Confidence 0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
T Consensus 644 -------------------------------------------------------------------------------- 643 (926)
T TIGR00580 644 -------------------------------------------------------------------------------- 643 (926)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhhhcccCCCCCHH-HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 685 GGEHVDVIIGAAVADGKVTPK-VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~K-v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
..... ...+...+ ..+.+++|||+++.+++.+++.|+++ ++++++..+|| .
T Consensus 644 ----------------~~~~~i~~~i~~el-----~~g~qv~if~n~i~~~e~l~~~L~~~--~p~~~v~~lHG-----~ 695 (926)
T TIGR00580 644 ----------------YDPELVREAIRREL-----LRGGQVFYVHNRIESIEKLATQLREL--VPEARIAIAHG-----Q 695 (926)
T ss_pred ----------------cCHHHHHHHHHHHH-----HcCCeEEEEECCcHHHHHHHHHHHHh--CCCCeEEEecC-----C
Confidence 00000 00011111 12568999999999999999999874 24689999999 9
Q ss_pred ccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 764 MRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 764 ~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++.+|++++++|++|+++|||||+++++|||+|++++||++|.|. ...+|+||+||+||.|..
T Consensus 696 m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~ 760 (926)
T TIGR00580 696 MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK 760 (926)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999975 788999999999999877
No 60
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-32 Score=308.13 Aligned_cols=337 Identities=18% Similarity=0.234 Sum_probs=262.1
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+.....+-..||.+|+.+|+.|+..+.+ .|+++.+++|+|||.+|..++++.+.. .-....+++++|
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~---~~ke~qalilaP 102 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM---SVKETQALILAP 102 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc---chHHHHHHHhcc
Confidence 3566777776777889999999999999999999988 999999999999999999999887643 223456999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.|..++...+. +.++..+.|+..... ..-......++|+|+||++.++++..+.+....+.+.|+|||+
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~---~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRR---EDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchh---hhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 9999999998887754 567777777765431 1111223468999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
.++.. +|...+..+....+.. .|++++|||-.. .+..+. .++...|...
T Consensus 180 EmLs~-gfkdqI~~if~~lp~~--vQv~l~SAT~p~------------~vl~vt----------------~~f~~~pv~i 228 (397)
T KOG0327|consen 180 EMLSR-GFKDQIYDIFQELPSD--VQVVLLSATMPS------------DVLEVT----------------KKFMREPVRI 228 (397)
T ss_pred hhhcc-chHHHHHHHHHHcCcc--hhheeecccCcH------------HHHHHH----------------HHhccCceEE
Confidence 99984 8988888888877654 689999999432 111111 1233334333
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.+..+... +
T Consensus 229 ~vkk~~lt-----------------------------------------------------------------------l 237 (397)
T KOG0327|consen 229 LVKKDELT-----------------------------------------------------------------------L 237 (397)
T ss_pred Eecchhhh-----------------------------------------------------------------------h
Confidence 22211100 0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
. .+.
T Consensus 238 ~---------gik------------------------------------------------------------------- 241 (397)
T KOG0327|consen 238 E---------GIK------------------------------------------------------------------- 241 (397)
T ss_pred h---------hee-------------------------------------------------------------------
Confidence 0 000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
+........+|+..|.++.. .-.+.+|||+++..+..|...|.. .++.+..+|
T Consensus 242 ------------------q~~i~v~k~~k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~----~~~~~s~~~ 294 (397)
T KOG0327|consen 242 ------------------QFYINVEKEEKLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRA----HGFTVSAIH 294 (397)
T ss_pred ------------------eeeeeccccccccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhh----CCceEEEee
Confidence 00000011126666666665 346799999999999999999977 678999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEe
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIE 833 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~ 833 (1931)
| +|.+.+|..++.+|++|..+|||+|+.+++|||+..|.+|||||+|.+..+|+||+||+||.|.+++.+..
T Consensus 295 ~-----d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~ 366 (397)
T KOG0327|consen 295 G-----DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINF 366 (397)
T ss_pred c-----ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeee
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999766643
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.98 E-value=8.4e-31 Score=344.71 Aligned_cols=310 Identities=20% Similarity=0.243 Sum_probs=214.2
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.++.++| +||++|+++++.++. .|.+++++||||||++|++++...+. .+.+++||+||++|+.|
T Consensus 227 ~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~------~g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 227 KFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE------AGYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEECCHHHHHHH
Confidence 44556776 899999999999876 25899999999999999999887665 24679999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
+++.+++++ ++++..++|+..... +...|.... ..++|+|+||+.+.+ .+.+.++++||+||+|++...
T Consensus 300 ~~~~~~~l~~~~gi~v~lltg~~~~~~-r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~- 372 (630)
T TIGR00643 300 HYNSLRNLLAPLGIEVALLTGSLKGKR-RKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE- 372 (630)
T ss_pred HHHHHHHHhcccCcEEEEEecCCCHHH-HHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-
Confidence 999999876 689999999876543 233444433 368999999998863 356789999999999997431
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEecc
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK 522 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 522 (1931)
....+. ........|++|+|||||... . ..+...-+-.+.... .+ .....|....+.
T Consensus 373 -qr~~l~---~~~~~~~~~~~l~~SATp~pr-----------t-l~l~~~~~l~~~~i~---~~-p~~r~~i~~~~~--- 429 (630)
T TIGR00643 373 -QRKKLR---EKGQGGFTPHVLVMSATPIPR-----------T-LALTVYGDLDTSIID---EL-PPGRKPITTVLI--- 429 (630)
T ss_pred -HHHHHH---HhcccCCCCCEEEEeCCCCcH-----------H-HHHHhcCCcceeeec---cC-CCCCCceEEEEe---
Confidence 111121 111111258899999999740 0 001000000000000 00 000000000000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
T Consensus 430 -------------------------------------------------------------------------------- 429 (630)
T TIGR00643 430 -------------------------------------------------------------------------------- 429 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
T Consensus 430 -------------------------------------------------------------------------------- 429 (630)
T TIGR00643 430 -------------------------------------------------------------------------------- 429 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh--------hHHHHHHHHHhcCCCCCCceeEE
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV--------VAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r--------~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
. ..+...+++.+.+. -..+.+++|||+.. ..+..+++.|.+. +.++++..
T Consensus 430 ------------------~-~~~~~~~~~~i~~~-l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~--~~~~~v~~ 487 (630)
T TIGR00643 430 ------------------K-HDEKDIVYEFIEEE-IAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA--FPKYNVGL 487 (630)
T ss_pred ------------------C-cchHHHHHHHHHHH-HHhCCcEEEEEccccccccchHHHHHHHHHHHHhh--CCCCcEEE
Confidence 0 00001111111111 01346788888764 4566777777653 25688999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|| +|++.+|.+++++|++|+.+|||||+++++|||+|++++||+||.|. +..+|.||+||+||.|..
T Consensus 488 lHG-----~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~ 556 (630)
T TIGR00643 488 LHG-----RMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQ 556 (630)
T ss_pred EeC-----CCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCC
Confidence 999 99999999999999999999999999999999999999999999996 788999999999999876
No 62
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=6.7e-30 Score=338.55 Aligned_cols=407 Identities=18% Similarity=0.183 Sum_probs=238.1
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
.+|++||.+++.+++. .++|++++||+|||++++.++.++... .+..+++|||||. .|+.||.++|+++++
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~---~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p 243 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY---RGITGPHMVVAPK-STLGNWMNEIRRFCP 243 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh---cCCCCCEEEEeCh-HHHHHHHHHHHHHCC
Confidence 4899999999999864 689999999999999998887655432 2334579999996 677999999999874
Q ss_pred -CcEEEEeCCCcccccchHHHHhh--cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH-HHHHHHHH
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQRE--FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY-SLVMSEFY 452 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~--~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~-~~im~~~~ 452 (1931)
+++..++|.... +....... ....+|+|+|++.+..... .+.--.|++|||||||++.+..+. ...++.+
T Consensus 244 ~l~v~~~~G~~~e---R~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L- 317 (1033)
T PLN03142 244 VLRAVKFHGNPEE---RAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF- 317 (1033)
T ss_pred CCceEEEeCCHHH---HHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh-
Confidence 678888886432 11111111 2467899999999986543 244457999999999999874321 2222222
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
...++|+|||||+..+ ...+..|-.++.+.++. ....+......+... ........|+..
T Consensus 318 ------~a~~RLLLTGTPlqNn--------l~ELwsLL~FL~P~~f~--s~~~F~~~f~~~~~~----~~~e~i~~L~~~ 377 (1033)
T PLN03142 318 ------STNYRLLITGTPLQNN--------LHELWALLNFLLPEIFS--SAETFDEWFQISGEN----DQQEVVQQLHKV 377 (1033)
T ss_pred ------hcCcEEEEecCCCCCC--------HHHHHHHHhcCCCCcCC--CHHHHHHHHcccccc----chHHHHHHHHHH
Confidence 2356899999999622 12344444444443332 222222222211100 000111122222
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh-cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY-GVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSF 611 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~ 611 (1931)
+..++.+ +.+..+.. .++... ......-....+.+ +..+ +. ..
T Consensus 378 L~pf~LR----------R~KsdV~~--------~LPpK~e~iv~v~LS~~Qk~l---Y~~l---l~------------k~ 421 (1033)
T PLN03142 378 LRPFLLR----------RLKSDVEK--------GLPPKKETILKVGMSQMQKQY---YKAL---LQ------------KD 421 (1033)
T ss_pred hhHHHhh----------hhHHHHhh--------hCCCceeEEEeeCCCHHHHHH---HHHH---HH------------HH
Confidence 2111110 00000000 000000 00000000000000 0000 00 00
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhh
Q 000174 612 LTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDV 691 (1931)
Q Consensus 612 l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~ 691 (1931)
...+...... ..+.. .-..++++|+. +.+..+..+...... + ..
T Consensus 422 ~~~l~~g~~~-~~Lln--ilmqLRk~cnH-----------------------------P~L~~~~ep~~~~~~-~---e~ 465 (1033)
T PLN03142 422 LDVVNAGGER-KRLLN--IAMQLRKCCNH-----------------------------PYLFQGAEPGPPYTT-G---EH 465 (1033)
T ss_pred HHHHhccccH-HHHHH--HHHHHHHHhCC-----------------------------HHhhhcccccCcccc-h---hH
Confidence 0000000000 00000 00011222110 000000000000000 0 00
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHH
Q 000174 692 IIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQE 771 (1931)
Q Consensus 692 ~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~ 771 (1931)
....+.|+..|.++|... ...+.|+|||++...+++.|.++|.. .++.+..|+| +++..+|++
T Consensus 466 -------lie~SgKl~lLdkLL~~L-k~~g~KVLIFSQft~~LdiLed~L~~----~g~~y~rIdG-----sts~~eRq~ 528 (1033)
T PLN03142 466 -------LVENSGKMVLLDKLLPKL-KERDSRVLIFSQMTRLLDILEDYLMY----RGYQYCRIDG-----NTGGEDRDA 528 (1033)
T ss_pred -------HhhhhhHHHHHHHHHHHH-HhcCCeEEeehhHHHHHHHHHHHHHH----cCCcEEEECC-----CCCHHHHHH
Confidence 013478999999999876 35678999999999999999999987 6889999999 999999999
Q ss_pred HHHHhhcC---CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 772 TIAKFRDG---RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 772 ~l~~Fr~G---~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
++++|+.. ..-+|++|.+++.|||++.|++||+||++|||..++|++||++|.||+
T Consensus 529 ~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQk 587 (1033)
T PLN03142 529 SIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQK 587 (1033)
T ss_pred HHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCC
Confidence 99999853 345899999999999999999999999999999999999999999998
No 63
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=7.3e-30 Score=347.01 Aligned_cols=305 Identities=19% Similarity=0.199 Sum_probs=212.1
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.....+| +||++|.++++.++. .|++++++||+|||.+|+.++...+. .+.+++|||||++|+.|
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHH
Confidence 33455665 799999999999876 58999999999999999987765543 35789999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
+++.+++.+ ++++..++|..+... ....|.... ..++|||+||+.|. ..+.+.++++||+||+|++..
T Consensus 665 ~~~~f~~~~~~~~v~i~~l~g~~s~~e-~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 665 HYDNFRDRFANWPVRIEMLSRFRSAKE-QTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHhhccCCceEEEEECCCCHHH-HHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--
Confidence 999999865 467888888765432 122333332 36899999997553 346778999999999999832
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHH--HhcCCeEEEecchHHHhhhCCCCceeEEEe
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLE--SKLDSVVCTIKDRKELEKHVPMPSEVVVEY 520 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le--~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y 520 (1931)
.+...+ ...+ ..+++|+|||||.. ....+. ...+..+..... ....+....+.
T Consensus 737 ~~~e~l----k~l~--~~~qvLl~SATpip------------rtl~l~~~gl~d~~~I~~~p------~~r~~v~~~~~- 791 (1147)
T PRK10689 737 RHKERI----KAMR--ADVDILTLTATPIP------------RTLNMAMSGMRDLSIIATPP------ARRLAVKTFVR- 791 (1147)
T ss_pred hHHHHH----HhcC--CCCcEEEEcCCCCH------------HHHHHHHhhCCCcEEEecCC------CCCCCceEEEE-
Confidence 222222 2222 24789999999973 111111 011111000000 00000000000
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHh
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg 600 (1931)
T Consensus 792 -------------------------------------------------------------------------------- 791 (1147)
T PRK10689 792 -------------------------------------------------------------------------------- 791 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
T Consensus 792 -------------------------------------------------------------------------------- 791 (1147)
T PRK10689 792 -------------------------------------------------------------------------------- 791 (1147)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
. .....+ ...++.+. ..+.+++|||+++..++.+++.|.+. ++++++..+||
T Consensus 792 ------------------~-~~~~~~--k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~--~p~~~v~~lHG--- 843 (1147)
T PRK10689 792 ------------------E-YDSLVV--REAILREI--LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHG--- 843 (1147)
T ss_pred ------------------e-cCcHHH--HHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHh--CCCCcEEEEeC---
Confidence 0 000000 00111111 12468999999999999999999874 24678999999
Q ss_pred CccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCC-CCHHHHHHhhccCCCCCCcE
Q 000174 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA-KTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p-~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|++.+|++++.+|++|+++|||||+++++|||+|++++||..+.. .+..+|+||+||+||.|..+
T Consensus 844 --~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g 910 (1147)
T PRK10689 844 --QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 (1147)
T ss_pred --CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce
Confidence 9999999999999999999999999999999999999999955443 35678999999999999873
No 64
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=1.3e-29 Score=339.75 Aligned_cols=166 Identities=21% Similarity=0.305 Sum_probs=134.7
Q ss_pred chhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+++.++.+|+|+|.++++. ++. +|+|+++|||||||++|.+++.+.+.. .+.++|+|+|+++|+.|+++
T Consensus 12 ~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-----~~~~~l~l~P~~aLa~q~~~ 86 (720)
T PRK00254 12 IKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-----EGGKAVYLVPLKALAEEKYR 86 (720)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-----cCCeEEEEeChHHHHHHHHH
Confidence 44778889999999999999987 455 999999999999999999988766542 24689999999999999999
Q ss_pred HHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHH
Q 000174 370 VIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 370 ~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
.++.+ +++++..++|+...+ ..| +..++|+|+||+++..++.++...+.++++||+||+|.+... .+...
T Consensus 87 ~~~~~~~~g~~v~~~~Gd~~~~----~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~-~rg~~ 158 (720)
T PRK00254 87 EFKDWEKLGLRVAMTTGDYDST----DEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY-DRGAT 158 (720)
T ss_pred HHHHHhhcCCEEEEEeCCCCCc----hhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc-cchHH
Confidence 99864 478899999986532 223 357899999999999888877667899999999999999763 44455
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+..+..... ..+++++||||+.+
T Consensus 159 le~il~~l~--~~~qiI~lSATl~n 181 (720)
T PRK00254 159 LEMILTHML--GRAQILGLSATVGN 181 (720)
T ss_pred HHHHHHhcC--cCCcEEEEEccCCC
Confidence 555554443 34899999999864
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.97 E-value=1.3e-29 Score=326.66 Aligned_cols=158 Identities=17% Similarity=0.239 Sum_probs=117.3
Q ss_pred CCCCCCcHHHHHHHHHHhc-c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 299 MPEEQARPYQLDVLEQAKK-K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
.|+. |+|||.++++.++. + ++++.++||||||.++.+++..+.. ......++++++||++|+.|++++++++.
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~---~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEI---GAKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccc---cccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 4555 99999999999998 4 5788899999999966543332211 11223355667799999999999988754
Q ss_pred -------------------------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc--------
Q 000174 376 -------------------------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-------- 422 (1931)
Q Consensus 376 -------------------------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-------- 422 (1931)
++++..++|+... ..+|.....+++|||+|+ |++.++.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~----~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFAD----NDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGF 159 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCCh----HHHHHhcCCCCcEEEECH----HHHcCCcccccccccc
Confidence 2678888999764 467877778999999994 55555544
Q ss_pred --------cccceeEEEEeCCCcccCCCcHHHHHHHHHhhc--CCCC-CcEEEEEeecCC
Q 000174 423 --------KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT--SKEK-RPSVFGMTASPV 471 (1931)
Q Consensus 423 --------~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~--~~~~-~p~iLgLTATP~ 471 (1931)
.+.++.+||||||| +. ++|...+..+.... +... ..++++||||+.
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p 216 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSR 216 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCC
Confidence 26889999999999 33 58999988888753 2211 258999999975
No 66
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=7.9e-29 Score=311.74 Aligned_cols=335 Identities=24% Similarity=0.304 Sum_probs=235.7
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.....||+||.+++..+.+ +..++++|||+|||++++..+..+. ..+||||||.+|+.||++.+..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~---------~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK---------RSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc---------CCEEEEECcHHHHHHHHHHHHH
Confidence 3456899999999999876 5789999999999999999887642 2399999999999999999998
Q ss_pred HcCCc--EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH
Q 000174 374 QTGYV--VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451 (1931)
Q Consensus 374 ~~~l~--v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~ 451 (1931)
+++.. ++.+.|+... + ....|+|+|.|.+........+....+++||||||||+..+ .|..+...+
T Consensus 103 ~~~~~~~~g~~~~~~~~-------~----~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~ 170 (442)
T COG1061 103 FLLLNDEIGIYGGGEKE-------L----EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELL 170 (442)
T ss_pred hcCCccccceecCceec-------c----CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhh
Confidence 88774 5666654321 0 11479999999998753122344558999999999999885 778777766
Q ss_pred HhhcCCCCCcE-EEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccchhhhHH
Q 000174 452 YHTTSKEKRPS-VFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 452 ~~~~~~~~~p~-iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
.. +. +|||||||.+.++- .+..+...++..++...-.+.+. .++..+....+...........
T Consensus 171 ~~-------~~~~LGLTATp~R~D~~--------~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~ 235 (442)
T COG1061 171 SA-------AYPRLGLTATPEREDGG--------RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEERE 235 (442)
T ss_pred hc-------ccceeeeccCceeecCC--------chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHH
Confidence 54 33 99999999875521 44566666777777776666665 3333333332222111000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQ 609 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~ 609 (1931)
. ... ..............-.|
T Consensus 236 ~---~~~-------------------------------------------------~~~~~~~~~~~~~~~~~------- 256 (442)
T COG1061 236 Y---AKE-------------------------------------------------SARFRELLRARGTLRAE------- 256 (442)
T ss_pred h---hhh-------------------------------------------------hhhhhhhhhhhhhhhHH-------
Confidence 0 000 00000000000000000
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCch
Q 000174 610 SFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHV 689 (1931)
Q Consensus 610 ~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~ 689 (1931)
.....
T Consensus 257 ----------------------~~~~~----------------------------------------------------- 261 (442)
T COG1061 257 ----------------------NEARR----------------------------------------------------- 261 (442)
T ss_pred ----------------------HHHHH-----------------------------------------------------
Confidence 00000
Q ss_pred hhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHH
Q 000174 690 DVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM 769 (1931)
Q Consensus 690 ~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R 769 (1931)
.......|+..+..++.... .+.++|||+....++..++..+.. +++ +..+.| ..+..+|
T Consensus 262 --------~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~----~~~-~~~it~-----~t~~~eR 321 (442)
T COG1061 262 --------IAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLA----PGI-VEAITG-----ETPKEER 321 (442)
T ss_pred --------HhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcC----CCc-eEEEEC-----CCCHHHH
Confidence 00012345566666665542 578999999999999999999987 455 889999 9999999
Q ss_pred HHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 770 QETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 770 ~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.+++++|+.|++++||++.|+.||+|+|+++++|...+..|+..|+||+||.-|
T Consensus 322 ~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 322 EAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999
No 67
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.97 E-value=1.1e-29 Score=307.17 Aligned_cols=405 Identities=19% Similarity=0.199 Sum_probs=254.3
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
..+|+||.+.+.|+.. -|+|++++||+|||++.+..+.++... .+-.++-||+||...| ..|.++|++|+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~---~~~~GPfLVi~P~StL-~NW~~Ef~rf~P 241 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR---KGIPGPFLVIAPKSTL-DNWMNEFKRFTP 241 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh---cCCCCCeEEEeeHhhH-HHHHHHHHHhCC
Confidence 5799999999999876 579999999999999998877665543 2445679999999888 55999999998
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcC--CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc-HHHHHHHHH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFD--TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP-YSLVMSEFY 452 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~--~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~-~~~im~~~~ 452 (1931)
++++.+++|+... +....+..+. ..+|+|+|+++.+.. ..++.--.|.+||+|||||+.+.+. ...+++.|.
T Consensus 242 ~l~~~~~~Gdk~e---R~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEE---RAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHH---HHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhc
Confidence 6999999998532 2233333332 689999999999864 4456667899999999999998532 334455444
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh---cCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESK---LDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~---l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
. ...|++|+||.+ ++|..|+++ +-+.|+.. .+.+..+...... .........|
T Consensus 317 ~-------~nrLLlTGTPLQ-----------NNL~ELWaLLnFllPdiF~~--~e~F~swF~~~~~----~~~~e~v~~L 372 (971)
T KOG0385|consen 317 T-------DNRLLLTGTPLQ-----------NNLHELWALLNFLLPDIFNS--AEDFDSWFDFTNC----EGDQELVSRL 372 (971)
T ss_pred c-------cceeEeeCCccc-----------ccHHHHHHHHHhhchhhccC--HHHHHHHHccccc----ccCHHHHHHH
Confidence 3 668999999996 234445544 44444432 2333332221100 0000111122
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHH--HhHHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE--LGQWCAYKV 607 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~--lg~~~a~~~ 607 (1931)
+..++.+ +. +|.+.++.+.|+.+.....++-.. -..|...
T Consensus 373 h~vL~pF-------lL-----------------------------RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~-- 414 (971)
T KOG0385|consen 373 HKVLRPF-------LL-----------------------------RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKA-- 414 (971)
T ss_pred HhhhhHH-------HH-----------------------------HHHHHhHhhcCCCcceeeEeccchHHHHHHHHH--
Confidence 2222111 11 111111111111111100000000 0001000
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
.+.+.+..-... ... ...-|..+.-.|..+.. |+-|.++..+.++ ...++
T Consensus 415 --iL~kdl~~~n~~-~~~----~k~kL~NI~mQLRKccn----------------------HPYLF~g~ePg~p-yttde 464 (971)
T KOG0385|consen 415 --ILMKDLDALNGE-GKG----EKTKLQNIMMQLRKCCN----------------------HPYLFDGAEPGPP-YTTDE 464 (971)
T ss_pred --HHHhcchhhccc-ccc----hhhHHHHHHHHHHHhcC----------------------CccccCCCCCCCC-CCcch
Confidence 000000000000 000 11112222222211110 3333333222111 12222
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHH
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~ 767 (1931)
++ ..-|.|+..|-++|... ...++|++||.+...+.+.|.++..- .++....|.| +++.+
T Consensus 465 hL----------v~nSGKm~vLDkLL~~L-k~~GhRVLIFSQmt~mLDILeDyc~~----R~y~ycRiDG-----St~~e 524 (971)
T KOG0385|consen 465 HL----------VTNSGKMLVLDKLLPKL-KEQGHRVLIFSQMTRMLDILEDYCML----RGYEYCRLDG-----STSHE 524 (971)
T ss_pred HH----------HhcCcceehHHHHHHHH-HhCCCeEEEeHHHHHHHHHHHHHHHh----cCceeEeecC-----CCCcH
Confidence 21 13478999999999887 56799999999999999999999875 7899999999 99999
Q ss_pred HHHHHHHHhhcCC---ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 768 QMQETIAKFRDGR---VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~---~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|...++.|.... .-+|++|.+++-|||+..++.||.||..|||....|...||+|+||+
T Consensus 525 eR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~ 587 (971)
T KOG0385|consen 525 EREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQK 587 (971)
T ss_pred HHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCc
Confidence 9999999999543 44899999999999999999999999999999999999999999998
No 68
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=5.7e-29 Score=332.61 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=128.7
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+.+.++. |+++|.++++.+.+ +|+|+++|||||||++|.+++.+.+.. +.++|+|+|+++|+.|++++
T Consensus 12 ~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~------~~k~v~i~P~raLa~q~~~~ 84 (674)
T PRK01172 12 FLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA------GLKSIYIVPLRSLAMEKYEE 84 (674)
T ss_pred HHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh------CCcEEEEechHHHHHHHHHH
Confidence 33566666654 99999999999988 899999999999999999988776652 35799999999999999999
Q ss_pred HHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 371 IREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 371 l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
++++ +|.++...+|+...+. ..+...+|+|+||+++..++.+....+.++++||+||||++.+. .+...+
T Consensus 85 ~~~l~~~g~~v~~~~G~~~~~~-------~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~-~rg~~l 156 (674)
T PRK01172 85 LSRLRSLGMRVKISIGDYDDPP-------DFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDE-DRGPTL 156 (674)
T ss_pred HHHHhhcCCeEEEEeCCCCCCh-------hhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCC-CccHHH
Confidence 9874 3788888888764321 12357899999999998888776666899999999999999753 444444
Q ss_pred HHHHhhcC-CCCCcEEEEEeecCCC
Q 000174 449 SEFYHTTS-KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 449 ~~~~~~~~-~~~~p~iLgLTATP~~ 472 (1931)
..++.... .....++++||||+.+
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n 181 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSN 181 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCC
Confidence 44333221 1234789999999864
No 69
>PRK14718 ribonuclease III; Provisional
Probab=99.97 E-value=7.7e-30 Score=299.01 Aligned_cols=130 Identities=32% Similarity=0.508 Sum_probs=110.0
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|+++|||.|.+..|| +||||+|+.. .||||||||||+||+++++.|||.+||+++||.||.+|+.+|||.+|+.+|
T Consensus 4 ~~LEkrLGY~Fkn~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~IA 82 (467)
T PRK14718 4 SQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIA 82 (467)
T ss_pred HHHHHHhCCCcCCHHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 35788899999665555 9999999865 489999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
+++||..||+... +. .. ... ..
T Consensus 83 r~LGL~d~Lrlg~---------gE---------------------------------------~~--------sgG--~~ 104 (467)
T PRK14718 83 QALNISDGLRLGE---------GE---------------------------------------LR--------SGG--FR 104 (467)
T ss_pred HHcCchHHHhhCC---------cc---------------------------------------cc--------cCC--CC
Confidence 9999999998643 00 00 000 12
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMK 1560 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~ 1560 (1931)
.++++||+|||||||+|+|+|++.+..|+.
T Consensus 105 ~~sILADvFEALIGAIYLDsG~e~a~~fI~ 134 (467)
T PRK14718 105 RPSILADAFEAIIGAVFLDGGFEAAQGVIK 134 (467)
T ss_pred ChhHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 578999999999999999999987776653
No 70
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=5.2e-29 Score=327.80 Aligned_cols=415 Identities=18% Similarity=0.193 Sum_probs=262.0
Q ss_pred CCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 301 EEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
...|+++|+++++.+.+ +++++.++||||||.+|+.++.+.+.. ++++|||+||++|+.|+.+.+++.++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~fg 215 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRARFG 215 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 34799999999999986 679999999999999999988877652 46799999999999999999999999
Q ss_pred CcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC---Cc-H-HHHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---HP-Y-SLVMSE 450 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---~~-~-~~im~~ 450 (1931)
.++..++|+.+... +...|.+... ..+|||+|++.++ ..+.++++||+||+|+..-. .+ | ...+..
T Consensus 216 ~~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 99999999876532 3466776654 5799999998875 56889999999999987532 11 1 111111
Q ss_pred HHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc-------
Q 000174 451 FYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA------- 523 (1931)
Q Consensus 451 ~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~------- 523 (1931)
+.. .....+++++||||.. ..+.....- .-.......+ . .-...|...++.....
T Consensus 288 ~ra---~~~~~~~il~SATps~-----------~s~~~~~~g-~~~~~~l~~r--~-~~~~~p~v~~id~~~~~~~~~~~ 349 (679)
T PRK05580 288 VRA---KLENIPVVLGSATPSL-----------ESLANAQQG-RYRLLRLTKR--A-GGARLPEVEIIDMRELLRGENGS 349 (679)
T ss_pred HHh---hccCCCEEEEcCCCCH-----------HHHHHHhcc-ceeEEEeccc--c-ccCCCCeEEEEechhhhhhcccC
Confidence 111 1223678999999962 011111100 0011111100 0 0112343333332110
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~ 603 (1931)
.....+.+.+++....-++.+...+++....++.++.++....|+.+...+.-++.. -.-.++||
T Consensus 350 ~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~---------------~~l~Ch~C 414 (679)
T PRK05580 350 FLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQ---------------RRLRCHHC 414 (679)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCC---------------CeEECCCC
Confidence 011223333333322222233334444444444444444333222221110000000 00001111
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccc
Q 000174 604 AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVV 683 (1931)
Q Consensus 604 a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~ 683 (1931)
.+.. .
T Consensus 415 g~~~-----------------------------------------------------------------------~---- 419 (679)
T PRK05580 415 GYQE-----------------------------------------------------------------------P---- 419 (679)
T ss_pred cCCC-----------------------------------------------------------------------C----
Confidence 1000 0
Q ss_pred cCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 684 SGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 684 s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
.. ...+......|......++.+++.|.++ +++.++..+|| +
T Consensus 420 -------------~~------------------~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~--fp~~~v~~~~~-----d 461 (679)
T PRK05580 420 -------------IP------------------KACPECGSTDLVPVGPGTERLEEELAEL--FPEARILRIDR-----D 461 (679)
T ss_pred -------------CC------------------CCCCCCcCCeeEEeeccHHHHHHHHHHh--CCCCcEEEEec-----c
Confidence 00 0011122234666677788888888774 35788999999 6
Q ss_pred cc--HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE--cCCCCC----------HHHHHHhhccCCCCCCcEE
Q 000174 764 MR--TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR--FDLAKT----------VLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 764 ~~--~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~--fD~p~s----------~~~yiQr~GRa~R~Gs~~i 829 (1931)
+. ..++++++++|++|+++|||+|+++++|+|+|++++|+. +|.+.+ ...|+|++|||||.+..+.
T Consensus 462 ~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~ 541 (679)
T PRK05580 462 TTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGE 541 (679)
T ss_pred ccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCE
Confidence 65 567899999999999999999999999999999999954 454443 3678999999999999988
Q ss_pred EEEecCChhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q 000174 830 LMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISV 875 (1931)
Q Consensus 830 vlv~~~~~~~~~~l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~ 875 (1931)
+++++.++++..+........+.+.+..++.+...+++|+.++..+
T Consensus 542 viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i 587 (679)
T PRK05580 542 VLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALL 587 (679)
T ss_pred EEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEe
Confidence 9988888877766655556666777777777777788888876655
No 71
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=5.1e-28 Score=328.85 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=107.7
Q ss_pred EEeCCCchHHHHHHHHHHHHHHHhhh-------cCCCcEEEEEeCChhHHHHHHHHHHH---------------HcCCcE
Q 000174 322 AFLETGAGKTLIAVLLIRSICNDLQR-------QNKKMLAVFLVPKVPLVYQQAEVIRE---------------QTGYVV 379 (1931)
Q Consensus 322 l~~~TGsGKTliall~i~~~l~~~~~-------~~~~~~vL~LvPT~~Lv~Q~~~~l~~---------------~~~l~v 379 (1931)
|++|||||||++|.+|+...+..... ...+.++|+|+|+++|+.|+.+.++. .++++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57899999999999987766543211 12357899999999999999998864 136789
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCC---cHHHHHHHHHhhc
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKH---PYSLVMSEFYHTT 455 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~---~~~~im~~~~~~~ 455 (1931)
.+.+|+...+ +.++...+.++|||+||++|..+|.+. ...+.++++|||||+|.+.+.. .+...+..+....
T Consensus 81 ~vrtGDt~~~----eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~ 156 (1490)
T PRK09751 81 GIRTGDTPAQ----ERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL 156 (1490)
T ss_pred EEEECCCCHH----HHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC
Confidence 9999987643 222223357899999999999887653 3468999999999999998641 2445555555543
Q ss_pred CCCCCcEEEEEeecCCC
Q 000174 456 SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~ 472 (1931)
+ ..+|+||||||..+
T Consensus 157 ~--~~~QrIgLSATI~n 171 (1490)
T PRK09751 157 H--TSAQRIGLSATVRS 171 (1490)
T ss_pred C--CCCeEEEEEeeCCC
Confidence 2 34799999999753
No 72
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=8e-28 Score=308.44 Aligned_cols=328 Identities=19% Similarity=0.198 Sum_probs=233.4
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEeCChhHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
+.+... +..|||.|.+|++.+.+ +|++|.+|||||||++|++|+...+.... ....+..+|+|+|-++|...+...
T Consensus 14 ~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~r 92 (814)
T COG1201 14 EWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRR 92 (814)
T ss_pred HHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHH
Confidence 334444 99999999999999999 99999999999999999999987776541 123457899999999999999998
Q ss_pred HHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCCcHH
Q 000174 371 IREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 371 l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
++.+ +|+.+.+-||++.... .-+...+.+||+|+||+.|.-++.... -.+.++.++|+||.|.+..+.--.
T Consensus 93 L~~~~~~~G~~v~vRhGDT~~~e----r~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 93 LEEPLRELGIEVAVRHGDTPQSE----KQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHHHHHHcCCccceecCCCChHH----hhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 8874 5899999999876432 222334689999999999998776633 258999999999999998642222
Q ss_pred HH---HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC-----eEEEecchHHHhhhCCCCceeE
Q 000174 446 LV---MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-----VVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 446 ~i---m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~-----~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
++ +..+..... .++++|||||-.. +. .+..+|.. .|..... ...+...+
T Consensus 169 ~Lsl~LeRL~~l~~---~~qRIGLSATV~~------~~-------~varfL~g~~~~~~Iv~~~~-------~k~~~i~v 225 (814)
T COG1201 169 QLALSLERLRELAG---DFQRIGLSATVGP------PE-------EVAKFLVGFGDPCEIVDVSA-------AKKLEIKV 225 (814)
T ss_pred hhhhhHHHHHhhCc---ccEEEeehhccCC------HH-------HHHHHhcCCCCceEEEEccc-------CCcceEEE
Confidence 21 233333222 6999999999653 11 11111111 1111100 00000000
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
+.-...
T Consensus 226 ~~p~~~-------------------------------------------------------------------------- 231 (814)
T COG1201 226 ISPVED-------------------------------------------------------------------------- 231 (814)
T ss_pred EecCCc--------------------------------------------------------------------------
Confidence 000000
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
..|.
T Consensus 232 --~~~~-------------------------------------------------------------------------- 235 (814)
T COG1201 232 --LIYD-------------------------------------------------------------------------- 235 (814)
T ss_pred --cccc--------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
......-...+.+++++ ...+|||+|||.+|+.|+..|++. ....+..-||
T Consensus 236 ---------------------~~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~~~L~~~---~~~~i~~HHg 286 (814)
T COG1201 236 ---------------------EELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLAFRLKKL---GPDIIEVHHG 286 (814)
T ss_pred ---------------------cchhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHHHHHHHh---cCCceeeecc
Confidence 00000112233344433 347999999999999999999985 2367788888
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCC-C--CcEEEEEe
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP-G--SDYILMIE 833 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~-G--s~~ivlv~ 833 (1931)
+++.++|.++.++|++|+.+++|||+-+|-|||+.++++||+|..|.+...++||+||+|+. | ++++++..
T Consensus 287 -----SlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 287 -----SLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred -----cccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999863 3 55777754
No 73
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=5.5e-27 Score=290.75 Aligned_cols=321 Identities=18% Similarity=0.242 Sum_probs=234.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
.|+...|+-|.++|+.++. +|+|+.+|||.||+++|.+|++-. .+.+|||+|-.+|...|.+.++. .|+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---------~G~TLVVSPLiSLM~DQV~~l~~-~Gi 82 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---------EGLTLVVSPLISLMKDQVDQLEA-AGI 82 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---------CCCEEEECchHHHHHHHHHHHHH-cCc
Confidence 6889999999999999999 999999999999999999997532 24699999999999999999987 478
Q ss_pred cEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHHHHHHHhhc
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLVMSEFYHTT 455 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~im~~~~~~~ 455 (1931)
++..+.+..+.+.|. ..+..+.. ..+++..+|++|...--...+....+.++||||||++... |.|+.....+-...
T Consensus 83 ~A~~lnS~l~~~e~~-~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 83 RAAYLNSTLSREERQ-QVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred eeehhhcccCHHHHH-HHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 888888887665543 33333333 5899999999998654334455678899999999999963 56777666555444
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
..-..+.++.||||-.. .+... +.+.|. ...+...+..++.++....
T Consensus 162 ~~~~~~p~~AlTATA~~--------~v~~D---I~~~L~---------------l~~~~~~~~sfdRpNi~~~------- 208 (590)
T COG0514 162 AGLPNPPVLALTATATP--------RVRDD---IREQLG---------------LQDANIFRGSFDRPNLALK------- 208 (590)
T ss_pred hhCCCCCEEEEeCCCCh--------HHHHH---HHHHhc---------------CCCcceEEecCCCchhhhh-------
Confidence 33345789999998432 11111 111111 0011111111111100000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
+..
T Consensus 209 -----------------------------------------------------------------------v~~------ 211 (590)
T COG0514 209 -----------------------------------------------------------------------VVE------ 211 (590)
T ss_pred -----------------------------------------------------------------------hhh------
Confidence 000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
T Consensus 212 -------------------------------------------------------------------------------- 211 (590)
T COG0514 212 -------------------------------------------------------------------------------- 211 (590)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
..+++.+.+ .|.+........+||||.+|..++.+++.|.. .|+++..+|| +|+..+|+.+-++
T Consensus 212 -----~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~----~g~~a~~YHa-----Gl~~~eR~~~q~~ 275 (590)
T COG0514 212 -----KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRK----NGISAGAYHA-----GLSNEERERVQQA 275 (590)
T ss_pred -----cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHH----CCCceEEecC-----CCCHHHHHHHHHH
Confidence 000000000 11111123455699999999999999999998 6899999999 9999999999999
Q ss_pred hhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCC
Q 000174 776 FRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGN 836 (1931)
Q Consensus 776 Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~ 836 (1931)
|..+++.|+|||.+.+.|||-|++..|||||+|.|+.+|+|-+|||||.|.. .+++..+++
T Consensus 276 f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 276 FLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999977 555555554
No 74
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.5e-28 Score=259.10 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=145.3
Q ss_pred CcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 290 GKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
++...++-..||..|.+.|.++||.++- -+++..+..|.|||.+|++.-++-++ ..++...++++|.||+|+.|+.
T Consensus 51 pellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqie---pv~g~vsvlvmchtrelafqi~ 127 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIE---PVDGQVSVLVMCHTRELAFQIS 127 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcC---CCCCeEEEEEEeccHHHHHHHH
Confidence 3455788889999999999999999766 99999999999999999997655443 3345578999999999999999
Q ss_pred HHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcH
Q 000174 369 EVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 369 ~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
++..++. +.+|.+++|++.... +. ..+.+.++|+|+||++++.+.+++.+.+.++...|+|||+.++..-..
T Consensus 128 ~ey~rfskymP~vkvaVFfGG~~Ikk-de---e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDM 203 (387)
T KOG0329|consen 128 KEYERFSKYMPSVKVSVFFGGLFIKK-DE---ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDM 203 (387)
T ss_pred HHHHHHHhhCCCceEEEEEcceeccc-cH---HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHH
Confidence 9887764 689999999987632 11 122348899999999999999999999999999999999999987778
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+..++++....|.. .+++.+|||..
T Consensus 204 rRDvQEifr~tp~~--KQvmmfsatls 228 (387)
T KOG0329|consen 204 RRDVQEIFRMTPHE--KQVMMFSATLS 228 (387)
T ss_pred HHHHHHHhhcCccc--ceeeeeeeecc
Confidence 88888888876654 78999999975
No 75
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=2.5e-27 Score=322.96 Aligned_cols=299 Identities=17% Similarity=0.156 Sum_probs=206.1
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GY 377 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l 377 (1931)
.+|+++|.++++.++. +|+++++|||+|||.. ++++...+.. .+.+++||+||++|+.|+++.++.+. ++
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f-~l~~~~~l~~-----~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTF-GLVMSLYLAK-----KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHH-HHHHHHHHHh-----cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 4899999999999998 9999999999999964 4444333321 35789999999999999999999865 56
Q ss_pred cEEEEeCCCccc-ccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC----------CcHH
Q 000174 378 VVGHYCGEMGQD-FWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK----------HPYS 445 (1931)
Q Consensus 378 ~v~~~~G~~~~~-~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~----------~~~~ 445 (1931)
.+..++|+.+.. ......+.... ..++|+|+||++|.+++. .+....+++||+||||++++. .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 677777664321 11222333333 368999999999999886 366777999999999999852 3453
Q ss_pred -HHHHHHHhhcCC----------------------CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecc
Q 000174 446 -LVMSEFYHTTSK----------------------EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKD 502 (1931)
Q Consensus 446 -~im~~~~~~~~~----------------------~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~ 502 (1931)
..+..++...+. ....+++++|||.... +. ....+...+. +.+
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~--------~~~l~~~ll~---~~v-- 296 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GN--------RVKLFRELLG---FEV-- 296 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-ch--------HHHHhhccce---EEe--
Confidence 344444443321 0135677777775310 00 0000000000 000
Q ss_pred hHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhh
Q 000174 503 RKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGA 582 (1931)
Q Consensus 503 ~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~ 582 (1931)
..+
T Consensus 297 --------~~~--------------------------------------------------------------------- 299 (1176)
T PRK09401 297 --------GSP--------------------------------------------------------------------- 299 (1176)
T ss_pred --------cCc---------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccc
Q 000174 583 ANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSEN 662 (1931)
Q Consensus 583 ~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~ 662 (1931)
T Consensus 300 -------------------------------------------------------------------------------- 299 (1176)
T PRK09401 300 -------------------------------------------------------------------------------- 299 (1176)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhH---HHHHHH
Q 000174 663 GFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVA---ALVLPK 739 (1931)
Q Consensus 663 ~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~t---a~~L~~ 739 (1931)
......+.+. .. ....|...|.+++... +.++||||+++.. |+.|++
T Consensus 300 ---~~~~rnI~~~---------------------yi--~~~~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~ 349 (1176)
T PRK09401 300 ---VFYLRNIVDS---------------------YI--VDEDSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAE 349 (1176)
T ss_pred ---ccccCCceEE---------------------EE--EcccHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHH
Confidence 0000000000 00 0014666777777654 3479999999888 999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEE----ecccccCCCCCC-CCEEEEcCCCC-----
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA----TSVAEEGLDIRQ-CNVVIRFDLAK----- 809 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa----TdVaeeGlDip~-~~lVI~fD~p~----- 809 (1931)
.|.. .++++..+|| +| ++.+++|++|+++|||| |++++||||+|+ +++||+||+|.
T Consensus 350 ~L~~----~gi~v~~~hg-----~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~ 415 (1176)
T PRK09401 350 YLED----LGINAELAIS-----GF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSL 415 (1176)
T ss_pred HHHH----CCCcEEEEeC-----cH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEec
Confidence 9998 6899999999 77 23569999999999999 699999999999 89999999999
Q ss_pred -CHHHHHHhhccCCC
Q 000174 810 -TVLAYIQSRGRARK 823 (1931)
Q Consensus 810 -s~~~yiQr~GRa~R 823 (1931)
....|.||+||+-.
T Consensus 416 ~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 416 EEELAPPFLLLRLLS 430 (1176)
T ss_pred cccccCHHHHHHHHh
Confidence 77889999999864
No 76
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=9.3e-27 Score=289.99 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=85.9
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHH----HHHHhhcCCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQE----TIAKFRDGRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~----~l~~Fr~G~~~vLVaTdVaeeGlD 795 (1931)
.+.++||||+++..++.+++.|++.. ....+..+|| .+++.+|.+ ++++|++|+..|||||+++++|||
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~--~~~~~~~~h~-----~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiD 293 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENA--PEEEIMLLHS-----RFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLD 293 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhc--CCCeEEEEEC-----CCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceec
Confidence 45799999999999999999998731 2246899999 898888865 589999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 796 IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 796 ip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|+ +++||+++.| +.+|+||+||+||.|.+
T Consensus 294 i~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~ 322 (358)
T TIGR01587 294 IS-ADVMITELAP--IDSLIQRLGRLHRYGRK 322 (358)
T ss_pred cC-CCEEEEcCCC--HHHHHHHhccccCCCCC
Confidence 95 8999999876 78999999999998765
No 77
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.95 E-value=5.2e-28 Score=306.19 Aligned_cols=432 Identities=20% Similarity=0.178 Sum_probs=254.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~ 376 (1931)
.+||+||.+.+.+++. +|+|+++++|+|||+..+..+..+..... -.++.|||||...+.. |..+|..|+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~---~~gpflvvvplst~~~-W~~ef~~w~~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ---IHGPFLVVVPLSTITA-WEREFETWTD 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh---ccCCeEEEeehhhhHH-HHHHHHHHhh
Confidence 6899999999999764 89999999999999988887776665432 2345999999876655 9999999999
Q ss_pred CcEEEEeCCCcccccc-hHHHHhhc----CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH
Q 000174 377 YVVGHYCGEMGQDFWD-AQRWQREF----DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~-~~~w~~~~----~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~ 451 (1931)
.++.+|+|+.....-. .-.|-..- -..+++++|+++++..- .++.--.|.++++||||++.+.. ......+
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~--~~l~~~l 520 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDE--SKLYESL 520 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchH--HHHHHHH
Confidence 9999999987532211 11121111 14789999999997433 34566678999999999999743 2222221
Q ss_pred HhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhc---CCeEEEecchHHHh-hhCCCCceeEEEeccchhhh
Q 000174 452 YHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKL---DSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 452 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l---~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~ 527 (1931)
. ....-+.|++|+||.+ +.|..|.+++ .+.-+.. .+++. .+ ..
T Consensus 521 ~----~f~~~~rllitgTPlQ-----------NsikEL~sLl~Fl~P~kf~~--~~~f~~~~-~~--------------- 567 (1373)
T KOG0384|consen 521 N----QFKMNHRLLITGTPLQ-----------NSLKELWSLLHFLMPGKFDS--WDEFLEEF-DE--------------- 567 (1373)
T ss_pred H----HhcccceeeecCCCcc-----------ccHHHHHHHhcccCCCCCCc--HHHHHHhh-cc---------------
Confidence 1 1123568999999985 2444555444 3222211 11111 11 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
.-.+.+..+...+.+++.- |.+.++.+.|..+...++.+-..--|-..|++
T Consensus 568 ~~e~~~~~L~~~L~P~~lR-----------------------------r~kkdvekslp~k~E~IlrVels~lQk~yYk~ 618 (1373)
T KOG0384|consen 568 ETEEQVRKLQQILKPFLLR-----------------------------RLKKDVEKSLPPKEETILRVELSDLQKQYYKA 618 (1373)
T ss_pred hhHHHHHHHHHHhhHHHHH-----------------------------HHHhhhccCCCCCcceEEEeehhHHHHHHHHH
Confidence 0011222232222222211 11111111111111111111000000001111
Q ss_pred HH-HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 608 AQ-SFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 608 ~~-~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
+. .-...+....... .-.+|.-+.+.-+|+.-.-.... .++..+.+.. .
T Consensus 619 ILtkN~~~LtKG~~g~-------~~~lLNimmELkKccNHpyLi~g-------------------aee~~~~~~~--~-- 668 (1373)
T KOG0384|consen 619 ILTKNFSALTKGAKGS-------TPSLLNIMMELKKCCNHPYLIKG-------------------AEEKILGDFR--D-- 668 (1373)
T ss_pred HHHhhHHHHhccCCCC-------CchHHHHHHHHHHhcCCccccCc-------------------HHHHHHHhhh--h--
Confidence 10 0011111111100 00122222222222211000000 0000000000 0
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccH
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~ 766 (1931)
-..++.+.+.+ ..|.|+..|-++|... ...++|+|||.+-+.+.+.|+++|.. .+++...|.| ++..
T Consensus 669 ~~~d~~L~~lI---~sSGKlVLLDKLL~rL-k~~GHrVLIFSQMVRmLDIL~eYL~~----r~ypfQRLDG-----svrg 735 (1373)
T KOG0384|consen 669 KMRDEALQALI---QSSGKLVLLDKLLPRL-KEGGHRVLIFSQMVRMLDILAEYLSL----RGYPFQRLDG-----SVRG 735 (1373)
T ss_pred cchHHHHHHHH---HhcCcEEeHHHHHHHH-hcCCceEEEhHHHHHHHHHHHHHHHH----cCCcceeccC-----Ccch
Confidence 00111222211 3467888888888776 46789999999999999999999987 8999999999 9999
Q ss_pred HHHHHHHHHhh---cCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE---ecCChhHH
Q 000174 767 FQMQETIAKFR---DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI---ERGNLSHA 840 (1931)
Q Consensus 767 ~~R~~~l~~Fr---~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv---~~~~~~~~ 840 (1931)
..|+.+|+.|. +..+-+|+||.+++-|||+..++.||.||..|||...+|+..||+|+||+-.|.| -+.+.-.+
T Consensus 736 elRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEe 815 (1373)
T KOG0384|consen 736 ELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEE 815 (1373)
T ss_pred HHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHH
Confidence 99999999999 4567799999999999999999999999999999999999999999999933332 12233344
Q ss_pred HHHHHH
Q 000174 841 TFLRNA 846 (1931)
Q Consensus 841 ~~l~~~ 846 (1931)
.+++.+
T Consensus 816 EilERA 821 (1373)
T KOG0384|consen 816 EILERA 821 (1373)
T ss_pred HHHHHH
Confidence 555544
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=1.9e-26 Score=297.60 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=85.8
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHh-hcCCceEEEEecccccCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKF-RDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F-r~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
+.++|||++++..++.+.+.|.+.. +++.+..+|| ++++. ++++++| ++|+.+|||||++||+|||||+|
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~--~~~~v~~LHG-----~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V 465 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL--PIYDFYIIHG-----KVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNA 465 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc--CCceEEeccC-----CcCHH--HHHHHHHhccCceeEEeccChhhccccccCe
Confidence 4689999999999999999998731 3688999999 88864 5778888 79999999999999999999999
Q ss_pred CEEEEcC---CCC---------CHHHHHHhhccCCCCCCc
Q 000174 800 NVVIRFD---LAK---------TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 800 ~lVI~fD---~p~---------s~~~yiQr~GRa~R~Gs~ 827 (1931)
++||++| .|. |..+|+||+|||||....
T Consensus 466 ~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G 505 (675)
T PHA02653 466 THVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPG 505 (675)
T ss_pred eEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCC
Confidence 9999999 565 888999999999998443
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.6e-27 Score=299.79 Aligned_cols=395 Identities=16% Similarity=0.187 Sum_probs=241.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc
Q 000174 321 IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400 (1931)
Q Consensus 321 Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~ 400 (1931)
++.++||||||.+|+.++.+.+. .++++|||+|+++|+.|+.+.+++.++.++.+++|+.+... +...|.+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~------~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA------LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHH
Confidence 47899999999999988877765 25679999999999999999999999999999999876433 456787765
Q ss_pred C-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC---Cc-H-HHHHHHHHhhcCCCCCcEEEEEeecCCCCC
Q 000174 401 D-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---HP-Y-SLVMSEFYHTTSKEKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 401 ~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---~~-~-~~im~~~~~~~~~~~~p~iLgLTATP~~~~ 474 (1931)
. ..+|||+|++.++ ..+.++++|||||+|+..-. .+ | ...+..+... .....++++||||.-
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~---~~~~~vil~SATPsl-- 141 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK---KFNCPVVLGSATPSL-- 141 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH---hcCCCEEEEeCCCCH--
Confidence 5 5799999999875 56889999999999998621 12 1 1112222221 123668999999972
Q ss_pred CCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccch----hhhHHHHHHHHHHHHHHHHHhhhhhh
Q 000174 475 GVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAA----SLWSLHEQLKQMEVAVEEAAQSSSRR 550 (1931)
Q Consensus 475 ~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~----~~~~l~~~i~~l~~~~~~~~~~~~~~ 550 (1931)
..+............-.... .....|...++...... ....+.+.+.+....-.+.+...+++
T Consensus 142 ------------es~~~~~~g~~~~~~l~~r~-~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrr 208 (505)
T TIGR00595 142 ------------ESYHNAKQKAYRLLVLTRRV-SGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRR 208 (505)
T ss_pred ------------HHHHHHhcCCeEEeechhhh-cCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 11111111111111000000 11223443343332211 12233334433333323334445555
Q ss_pred hhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 000174 551 SKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQ 630 (1931)
Q Consensus 551 ~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~ 630 (1931)
....++.++.+|....|+.+...+.-++... .-.++||.+...
T Consensus 209 Gya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~---------------~l~Ch~Cg~~~~---------------------- 251 (505)
T TIGR00595 209 GYSKNLLCRSCGYILCCPNCDVSLTYHKKEG---------------KLRCHYCGYQEP---------------------- 251 (505)
T ss_pred cCCCeeEhhhCcCccCCCCCCCceEEecCCC---------------eEEcCCCcCcCC----------------------
Confidence 5555555555554443333321110000000 000111111000
Q ss_pred HHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHH
Q 000174 631 ESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLI 710 (1931)
Q Consensus 631 ~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li 710 (1931)
++.
T Consensus 252 ----------------------------------------------~~~------------------------------- 254 (505)
T TIGR00595 252 ----------------------------------------------IPK------------------------------- 254 (505)
T ss_pred ----------------------------------------------CCC-------------------------------
Confidence 000
Q ss_pred HHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHH--HHHHHHHhhcCCceEEEEec
Q 000174 711 KILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQ--MQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 711 ~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~--R~~~l~~Fr~G~~~vLVaTd 788 (1931)
.. ..-+... +......++.+++.|.+. +++.++..+|+ +++..+ .++++++|++|+++|||+|+
T Consensus 255 ----~C-p~C~s~~--l~~~g~Gte~~~e~l~~~--fp~~~v~~~d~-----d~~~~~~~~~~~l~~f~~g~~~ILVgT~ 320 (505)
T TIGR00595 255 ----TC-PQCGSED--LVYKGYGTEQVEEELAKL--FPGARIARIDS-----DTTSRKGAHEALLNQFANGKADILIGTQ 320 (505)
T ss_pred ----CC-CCCCCCe--eEeecccHHHHHHHHHhh--CCCCcEEEEec-----ccccCccHHHHHHHHHhcCCCCEEEeCc
Confidence 00 0001111 222334456666666653 35788999999 666544 48999999999999999999
Q ss_pred ccccCCCCCCCCEEE--EcCCCC----------CHHHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHHHHHHHHHH
Q 000174 789 VAEEGLDIRQCNVVI--RFDLAK----------TVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARNSEETLRKE 856 (1931)
Q Consensus 789 VaeeGlDip~~~lVI--~fD~p~----------s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~~e~~l~~~ 856 (1931)
++++|+|+|++++|+ ++|... ....|+|++|||||.+..+.+++++.++++..+........+.+.+.
T Consensus 321 ~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~~~~~~~d~~~f~~~ 400 (505)
T TIGR00595 321 MIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGDYEAFYEQ 400 (505)
T ss_pred ccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHH
Confidence 999999999999985 666432 35678999999999998888888888887776655555556666666
Q ss_pred HHhhccccccccccccccc
Q 000174 857 AIERTDLSHLKDTSRLISV 875 (1931)
Q Consensus 857 ~i~r~~l~~~~~~~~~~~~ 875 (1931)
.++.+...+++|+.++..+
T Consensus 401 el~~R~~~~~PPf~~l~~i 419 (505)
T TIGR00595 401 ELAQRRALNYPPFTRLIRL 419 (505)
T ss_pred HHHHHHHcCCCchhcEEEE
Confidence 6766777788888877654
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=3.2e-25 Score=272.89 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=105.8
Q ss_pred HHHHHHHHHhc-c--CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-------C
Q 000174 307 YQLDVLEQAKK-K--NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-------G 376 (1931)
Q Consensus 307 ~Q~eai~~~l~-~--n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-------~ 376 (1931)
+|.++++.+.+ . ++++++|||||||.+|++++.. ...++++++|+++|+.||.+.++.++ +
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~ 71 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERD 71 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 69999999998 3 3789999999999999998763 12358999999999999999999876 4
Q ss_pred CcEEEEeCCCccc--ccch------------HHHHhh--cCCccEEEEcHHHHHHHHhcccc--------cccceeEEEE
Q 000174 377 YVVGHYCGEMGQD--FWDA------------QRWQRE--FDTKQVLVMTAQILLNILRHSII--------KMEAINLLIL 432 (1931)
Q Consensus 377 l~v~~~~G~~~~~--~~~~------------~~w~~~--~~~~~IlV~Tpq~L~d~L~~~~l--------~l~~i~lLV~ 432 (1931)
..+..++|....+ .+.. ..++.. ...+.|+++||+.|..++.+.+. .+..+++|||
T Consensus 72 ~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 72 VNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred ceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 5677777763322 1110 001111 24788999999999876654221 2478999999
Q ss_pred eCCCcccCCCc----HH-HHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 433 DECHHAVKKHP----YS-LVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 433 DEaH~~~~~~~----~~-~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
||+|.+..... +. ..+. +.... ...+++++|||||.
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~-~~~~~--~~~~~~i~lSAT~~ 192 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQ-LIRFF--ECRRKFVFLSATPD 192 (357)
T ss_pred ecccccCcccchhhhhhhHHHH-HHHhh--hcCCcEEEEecCCC
Confidence 99999874211 11 1222 11111 12378999999986
No 81
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.94 E-value=6.7e-26 Score=285.05 Aligned_cols=437 Identities=16% Similarity=0.185 Sum_probs=259.0
Q ss_pred CCCcHHHHHHHHHHh--c---cCEEEEeCCCchHHHHHHHHHH-HHHHHhh--hcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAK--K---KNTIAFLETGAGKTLIAVLLIR-SICNDLQ--RQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l--~---~n~Il~~~TGsGKTliall~i~-~~l~~~~--~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..+|.||++.+.|+. + -+.|+|++||.|||++.+..+. .+..+.. ..-...+.|||||. .|+--|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 568999999999963 3 6899999999999999887543 3333310 11234569999996 799999999999
Q ss_pred HcCC-cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHH
Q 000174 374 QTGY-VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 452 (1931)
Q Consensus 374 ~~~l-~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~ 452 (1931)
++++ +|..+.|.-.. +...+..+++++|+|++|..+.+.+.. +.-..|+|+|+||.|-+++. -.++.+...
T Consensus 1053 f~pfL~v~~yvg~p~~----r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1053 FFPFLKVLQYVGPPAE----RRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred hcchhhhhhhcCChHH----HHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 9874 77777876432 334455567899999999999976643 44568999999999999873 222222211
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc-hhhhHHHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA-ASLWSLHE 531 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~-~~~~~l~~ 531 (1931)
. -..-++|.||+||++.+ . .+|..|-..|-+..... ..+.-.++ .+|......-... .....-..
T Consensus 1125 q----L~a~hRLILSGTPIQNn----v----leLWSLFdFLMPGfLGt-EKqFqsrf-~kpI~asRd~K~Sske~EaG~l 1190 (1549)
T KOG0392|consen 1125 Q----LRANHRLILSGTPIQNN----V----LELWSLFDFLMPGFLGT-EKQFQSRF-GKPILASRDPKSSSKEQEAGVL 1190 (1549)
T ss_pred H----HhhcceEEeeCCCcccC----H----HHHHHHHHHhcccccCc-HHHHHHHh-cchhhhhcCcccchhHHHhhHH
Confidence 1 12356899999999622 1 23333333332222111 12222222 1221110000000 00000011
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000174 532 QLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSF 611 (1931)
Q Consensus 532 ~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~ 611 (1931)
.+..+...+.++ +.+|-+.++.++|+.++-+-.|| +|++...--+ ..|
T Consensus 1191 AleaLHKqVLPF-----------------------------~LRRlKedVL~DLPpKIIQDyyC--eLs~lQ~kLY-~df 1238 (1549)
T KOG0392|consen 1191 ALEALHKQVLPF-----------------------------LLRRLKEDVLKDLPPKIIQDYYC--ELSPLQKKLY-RDF 1238 (1549)
T ss_pred HHHHHHHHHHHH-----------------------------HHHHHHHHHHhhCChhhhhheee--ccCHHHHHHH-HHH
Confidence 122222222222 22444555556665554444344 3333221100 001
Q ss_pred HHHh----h----hhhhhhhh-hhHHHH-HHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccc
Q 000174 612 LTAL----Q----NDERANYQ-LDVKFQ-ESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSH 681 (1931)
Q Consensus 612 l~~l----~----~~~~~~~~-~~~~~~-~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~ 681 (1931)
.... + ..+...+. -..-|+ -.|++++|+...-.+.. .|+++..-
T Consensus 1239 ~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~--------------------~hp~la~i------ 1292 (1549)
T KOG0392|consen 1239 VKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTP--------------------VHPDLAAI------ 1292 (1549)
T ss_pred HHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCC--------------------CcchHHHH------
Confidence 1110 0 00000000 000111 24666666532111100 01111000
Q ss_pred cccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCC-------------CCceEEEEEeehhHHHHHHHHHhcCCCCC
Q 000174 682 VVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHT-------------EDFRAIIFVERVVAALVLPKVFAELPSLS 748 (1931)
Q Consensus 682 ~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~-------------~~~k~IIFv~~r~ta~~L~~~L~~~~~l~ 748 (1931)
..+. ..+...+.+-..+||+.+|.++|.+..-. .++|++|||+.+.+++.+.+-|-+- ..+
T Consensus 1293 ----~~~l-~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~-~mp 1366 (1549)
T KOG0392|consen 1293 ----VSHL-AHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK-YMP 1366 (1549)
T ss_pred ----HHHH-HHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh-hcC
Confidence 0000 00111222335689999999999876211 4689999999999999999876551 123
Q ss_pred CceeEEEEccCCCccccHHHHHHHHHHhhcC-Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 749 FVKSASLIGHNNSQEMRTFQMQETIAKFRDG-RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 749 ~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G-~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
.+....+.| +.+..+|++++++|+++ .++ +|++|-|++-|+|+.+++.||.++..|||....|.+.||+|.||
T Consensus 1367 sVtymRLDG-----SVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQ 1441 (1549)
T KOG0392|consen 1367 SVTYMRLDG-----SVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQ 1441 (1549)
T ss_pred ceeEEEecC-----CCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcC
Confidence 455568889 89999999999999988 677 55788999999999999999999999999999999999999999
Q ss_pred cEEE
Q 000174 827 DYIL 830 (1931)
Q Consensus 827 ~~iv 830 (1931)
+-+|
T Consensus 1442 KrvV 1445 (1549)
T KOG0392|consen 1442 KRVV 1445 (1549)
T ss_pred ceee
Confidence 9444
No 82
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=2.3e-25 Score=294.49 Aligned_cols=297 Identities=20% Similarity=0.230 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE----E
Q 000174 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV----G 380 (1931)
Q Consensus 306 ~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v----~ 380 (1931)
.+-.+.+..+.. +++|++++||||||.++.+++.+... .+.+++|++||+++|.|.++.+.+.++..+ +
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 344455555655 88999999999999999999876542 245799999999999999999987665443 3
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC-cccCCCcHH-HHHHHHHhhcCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH-HAVKKHPYS-LVMSEFYHTTSKE 458 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH-~~~~~~~~~-~im~~~~~~~~~~ 458 (1931)
...+... ..-...+|+|+|+++|++.+.+. ..+.++++|||||+| +..+. .+. ..++.+....+
T Consensus 79 y~vr~~~----------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~-Dl~L~ll~~i~~~lr-- 144 (819)
T TIGR01970 79 YRVRGEN----------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDA-DLGLALALDVQSSLR-- 144 (819)
T ss_pred EEEcccc----------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhcc-chHHHHHHHHHHhcC--
Confidence 3222211 11145789999999999998764 578999999999999 45553 332 22333333222
Q ss_pred CCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHH
Q 000174 459 KRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQME 537 (1931)
Q Consensus 459 ~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~ 537 (1931)
...++++||||... . .+..++. +.+.....+ ..|.+. .|.....
T Consensus 145 ~dlqlIlmSATl~~------------~--~l~~~l~~~~vI~~~gr-------~~pVe~--~y~~~~~------------ 189 (819)
T TIGR01970 145 EDLKILAMSATLDG------------E--RLSSLLPDAPVVESEGR-------SFPVEI--RYLPLRG------------ 189 (819)
T ss_pred CCceEEEEeCCCCH------------H--HHHHHcCCCcEEEecCc-------ceeeee--EEeecch------------
Confidence 23789999999752 0 1223332 111111000 001110 0100000
Q ss_pred HHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000174 538 VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQN 617 (1931)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~ 617 (1931)
.
T Consensus 190 ------------------------------------------------------------------~------------- 190 (819)
T TIGR01970 190 ------------------------------------------------------------------D------------- 190 (819)
T ss_pred ------------------------------------------------------------------h-------------
Confidence 0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcc
Q 000174 618 DERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAV 697 (1931)
Q Consensus 618 ~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~ 697 (1931)
.++.
T Consensus 191 --------------~~~~-------------------------------------------------------------- 194 (819)
T TIGR01970 191 --------------QRLE-------------------------------------------------------------- 194 (819)
T ss_pred --------------hhHH--------------------------------------------------------------
Confidence 0000
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 698 ADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 698 ~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
......+..++.. ...++|||++++..++.+++.|.+... .++.+..+|| ++++.+|.++++.|+
T Consensus 195 -----~~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg-----~L~~~eq~~~~~~~~ 259 (819)
T TIGR01970 195 -----DAVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYG-----ELSLAAQDRAIKPDP 259 (819)
T ss_pred -----HHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecC-----CCCHHHHHHHHhhcc
Confidence 0000111122221 246799999999999999999986211 3688999999 999999999999999
Q ss_pred cCCceEEEEecccccCCCCCCCCEEEEcCCCCC------------------HHHHHHhhccCCCCCCc
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKT------------------VLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s------------------~~~yiQr~GRa~R~Gs~ 827 (1931)
+|+.+|||||+|+|+|||||+|++||++++|.. -.+|+||+|||||.+..
T Consensus 260 ~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G 327 (819)
T TIGR01970 260 QGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPG 327 (819)
T ss_pred cCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCC
Confidence 999999999999999999999999999999853 34689999999997443
No 83
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.94 E-value=7.2e-26 Score=275.58 Aligned_cols=444 Identities=19% Similarity=0.163 Sum_probs=258.9
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..+|-+||.-.+.|+.- -++|++++||+|||++.+..+..+.+ .+..++-|||||...| ..|.++|++|+
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq----~g~~gpHLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ----IGNPGPHLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH----cCCCCCcEEEecchhH-HHHHHHHHHhC
Confidence 35699999999999742 57899999999999988876654444 3446678999999888 55999999998
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHH-HhcccccccceeEEEEeCCCcccCCCc--HHHHHHHH
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI-LRHSIIKMEAINLLILDECHHAVKKHP--YSLVMSEF 451 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~-L~~~~l~l~~i~lLV~DEaH~~~~~~~--~~~im~~~ 451 (1931)
.++|-.|+|.......-+....+.-...+|+|+||+....- -.+.+++-.+|+++|+||+|.+.+.++ |+..|.
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~-- 549 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS-- 549 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc--
Confidence 58999999986322111122222223789999999987642 234567778999999999999988543 333332
Q ss_pred HhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHH-H
Q 000174 452 YHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSL-H 530 (1931)
Q Consensus 452 ~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l-~ 530 (1931)
.+.-.+|+||+||.+ +...+|-.|-.++-+.++.. ..+++.......... +.......+ .
T Consensus 550 ------I~An~RlLLTGTPLQ--------NNL~ELiSLL~FvlP~vF~~-~~~dl~~if~~k~~~----d~d~e~~~l~q 610 (941)
T KOG0389|consen 550 ------INANFRLLLTGTPLQ--------NNLKELISLLAFVLPKVFDS-SMEDLDVIFKAKKTS----DGDIENALLSQ 610 (941)
T ss_pred ------ccccceEEeeCCccc--------ccHHHHHHHHHHHhhHhhhc-cchHHHHHHhccCCc----cchhhHHHHHH
Confidence 223568999999985 12234444444444555543 222332221111100 000011111 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000174 531 EQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQS 610 (1931)
Q Consensus 531 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~ 610 (1931)
++|.+....+.+++. +|.+..+.++|+.+...+.+|..+--+-..|.-+..
T Consensus 611 erIsrAK~im~PFIL-----------------------------RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~ 661 (941)
T KOG0389|consen 611 ERISRAKTIMKPFIL-----------------------------RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIE 661 (941)
T ss_pred HHHHHHHHhhhHHHH-----------------------------HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHH
Confidence 123333333333322 233333344444443333333322222222111111
Q ss_pred HHH----Hhhhh-hhhhhhhh----------HHHHHHHHHHHHHHhhhhh-hhcccccc--------ccccccccccccc
Q 000174 611 FLT----ALQND-ERANYQLD----------VKFQESYLSKVVSLLQCEL-VEGAVSKK--------DAKVVDSENGFVE 666 (1931)
Q Consensus 611 ~l~----~l~~~-~~~~~~~~----------~~~~~~yl~~i~~~l~~~~-~~~~~~~~--------~~~i~~~~~~~~~ 666 (1931)
... ....+ +.....+. -.+...|-.+....+...+ .+..-... .....|.+++..-
T Consensus 662 ~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc 741 (941)
T KOG0389|consen 662 LYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLC 741 (941)
T ss_pred HHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHH
Confidence 110 00000 00000000 0011112111111111000 00000000 0000011110000
Q ss_pred CCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC
Q 000174 667 GGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS 746 (1931)
Q Consensus 667 ~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~ 746 (1931)
....-+....|.+. ..-.|.|+..|..+|.+. ...+.|++||.+...+.+.|..+|..
T Consensus 742 ~~f~~~~~f~L~d~------------------~~mdSgK~r~L~~LLp~~-k~~G~RVLiFSQFTqmLDILE~~L~~--- 799 (941)
T KOG0389|consen 742 CQFRHLSKFQLKDD------------------LWMDSGKCRKLKELLPKI-KKKGDRVLIFSQFTQMLDILEVVLDT--- 799 (941)
T ss_pred HhcCCCcccccCCc------------------hhhhhhhHhHHHHHHHHH-hhcCCEEEEeeHHHHHHHHHHHHHHh---
Confidence 00000111111111 113478999999999987 45679999999999999999999998
Q ss_pred CCCceeEEEEccCCCccccHHHHHHHHHHhhcCC-ce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCC
Q 000174 747 LSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR-VT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP 824 (1931)
Q Consensus 747 l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~-~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~ 824 (1931)
.++....+.| .+....|+.+++.|...+ +. +|++|.+++-|||+..+|+||.||...||-...|.-.||+|.
T Consensus 800 -l~~~ylRLDG-----sTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRv 873 (941)
T KOG0389|consen 800 -LGYKYLRLDG-----STQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRV 873 (941)
T ss_pred -cCceEEeecC-----CccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhh
Confidence 5789999999 888999999999999544 44 899999999999999999999999999999999999999999
Q ss_pred CCc
Q 000174 825 GSD 827 (1931)
Q Consensus 825 Gs~ 827 (1931)
||.
T Consensus 874 GQt 876 (941)
T KOG0389|consen 874 GQT 876 (941)
T ss_pred CCc
Confidence 998
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1e-24 Score=282.13 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...|++.+... ...+.++||||+++..++.|+..|.. .++++..+|| .+.+.++..+..+++.|
T Consensus 410 ~~~K~~al~~~i~~~-~~~~~pvLIf~~t~~~se~l~~~L~~----~gi~~~~L~~-----~~~~~e~~~i~~ag~~g-- 477 (790)
T PRK09200 410 LDEKYKAVIEEVKER-HETGRPVLIGTGSIEQSETFSKLLDE----AGIPHNLLNA-----KNAAKEAQIIAEAGQKG-- 477 (790)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEecC-----CccHHHHHHHHHcCCCC--
Confidence 356888898888764 34577899999999999999999998 6899999999 88888888888888777
Q ss_pred eEEEEecccccCCCC---CCCC-----EEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEe
Q 000174 782 TLLVATSVAEEGLDI---RQCN-----VVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIE 833 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDi---p~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~ 833 (1931)
+|||||++++||+|| |+|. +||+||+|.+...|+||+|||||.|..+ +.++.
T Consensus 478 ~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is 539 (790)
T PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFIS 539 (790)
T ss_pred eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEc
Confidence 799999999999999 7998 9999999999999999999999999884 44444
No 85
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=6.1e-25 Score=297.99 Aligned_cols=356 Identities=18% Similarity=0.266 Sum_probs=211.6
Q ss_pred CCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 302 EQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..+|+||.+|+..+.+ +++|++++||||||++++..+..++.. +..++||||||+++|+.|+.+.|+.+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~----~~~~rVLfLvDR~~L~~Qa~~~F~~~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA----KRFRRILFLVDRSALGEQAEDAFKDTK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc----CccCeEEEEecHHHHHHHHHHHHHhcc
Confidence 5699999999988753 579999999999999988877766542 345689999999999999999998852
Q ss_pred CC---cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-----ccccccceeEEEEeCCCcccC-------
Q 000174 376 GY---VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-----SIIKMEAINLLILDECHHAVK------- 440 (1931)
Q Consensus 376 ~l---~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-----~~l~l~~i~lLV~DEaH~~~~------- 440 (1931)
.. .+..+++.... ... ..-....|+|+|+|.|.+.+.. ....+..+++||+|||||...
T Consensus 488 ~~~~~~~~~i~~i~~L-----~~~-~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 488 IEGDQTFASIYDIKGL-----EDK-FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred cccccchhhhhchhhh-----hhh-cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 11 11111111100 000 0113579999999999876532 124678899999999999741
Q ss_pred -C----------CcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhh
Q 000174 441 -K----------HPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKH 509 (1931)
Q Consensus 441 -~----------~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~ 509 (1931)
. ..|+.++..| ...+|||||||... ....++..++.+...+.+..-
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yF--------dA~~IGLTATP~r~---------------t~~~FG~pv~~Ysl~eAI~DG 618 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYF--------DAVKIGLTATPALH---------------TTEIFGEPVYTYSYREAVIDG 618 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhc--------CccEEEEecCCccc---------------hhHHhCCeeEEeeHHHHHhcC
Confidence 0 1334444322 14589999999741 123455667777665666533
Q ss_pred CCC----CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHH
Q 000174 510 VPM----PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANL 585 (1931)
Q Consensus 510 ~~~----p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l 585 (1931)
... |......+........-.+.+....... ..+. . ..+
T Consensus 619 ~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~---------------------------~~i~----~------~~l 661 (1123)
T PRK11448 619 YLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQT---------------------------GEID----L------ATL 661 (1123)
T ss_pred CcccCcCCEEEEEEeccccccccccchhhhcchhh---------------------------hhhh----h------ccC
Confidence 222 2221111110000000000000000000 0000 0 000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccc
Q 000174 586 IQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFV 665 (1931)
Q Consensus 586 ~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 665 (1931)
.. .+.+....+..+ + +.....+.
T Consensus 662 ~d---~~~~~~~~~~~~----------------------v---i~~~~~~~----------------------------- 684 (1123)
T PRK11448 662 ED---EVDFEVEDFNRR----------------------V---ITESFNRV----------------------------- 684 (1123)
T ss_pred cH---HHhhhHHHHHHH----------------------H---hhHHHHHH-----------------------------
Confidence 00 000000000000 0 00000000
Q ss_pred cCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC-
Q 000174 666 EGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL- 744 (1931)
Q Consensus 666 ~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~- 744 (1931)
-...|.+.+. .....|+||||.++.+|+.+.+.|.+.
T Consensus 685 ---------------------------------------i~~~l~~~l~---~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 685 ---------------------------------------VCEELAKYLD---PTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred ---------------------------------------HHHHHHHHHh---ccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 0111222221 123479999999999999999888763
Q ss_pred ----CCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc-eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 745 ----PSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV-TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 745 ----~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~-~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
+...+..+..++| +++ ++++++++|+++.. .|||+++++.+|+|+|.|++||.++++.|...|+|++|
T Consensus 723 ~~~~~~~~~~~v~~itg-----~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITG-----SID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HhhcCCcCccceEEEeC-----Ccc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 2222334567888 543 46789999999887 59999999999999999999999999999999999999
Q ss_pred cCCCC----CCcEEEEEe
Q 000174 820 RARKP----GSDYILMIE 833 (1931)
Q Consensus 820 Ra~R~----Gs~~ivlv~ 833 (1931)
|+.|. |+...+++.
T Consensus 796 RgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 796 RATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred hhccCCccCCCceEEEEe
Confidence 99995 455555543
No 86
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=2.2e-25 Score=309.41 Aligned_cols=137 Identities=20% Similarity=0.172 Sum_probs=105.9
Q ss_pred hhhhc-CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 294 EAKEK-MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 294 ~~l~~-~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
+.+++ .|+ +|+++|+++++.+++ +++++.+|||+|||+.+++++..+.. ++.++|||+||++|+.|+++.+
T Consensus 70 ~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 70 EFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh------cCCeEEEEECHHHHHHHHHHHH
Confidence 33444 677 799999999999999 99999999999999966655443321 3468999999999999999999
Q ss_pred HHHc-----CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 372 REQT-----GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 372 ~~~~-----~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+.+. ++++..++|+..... ....|..+.. .++|+|+||++|.+.+... ...++++||+||||++++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccc
Confidence 9854 456677888876432 2233544444 5899999999999876542 227799999999999975
No 87
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=8.6e-25 Score=277.05 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...|++++... ...+..+||||+++..++.|++.|.. .++++..||| .+. +|+..+..|+.+..
T Consensus 455 ~~~K~~aL~~~i~~~-~~~~~pvLIft~t~~~se~L~~~L~~----~gi~~~~Lhg-----~~~--~rE~~ii~~ag~~g 522 (656)
T PRK12898 455 AAAKWAAVAARVREL-HAQGRPVLVGTRSVAASERLSALLRE----AGLPHQVLNA-----KQD--AEEAAIVARAGQRG 522 (656)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCCEEEeeC-----CcH--HHHHHHHHHcCCCC
Confidence 346888999988775 22345699999999999999999998 6899999999 654 55566666776667
Q ss_pred eEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 782 TLLVATSVAEEGLDIR---QCN-----VVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip---~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
.|||||++++||+||+ +|. +||+||+|.+...|+||+|||||.|..+
T Consensus 523 ~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G 577 (656)
T PRK12898 523 RITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPG 577 (656)
T ss_pred cEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCe
Confidence 8999999999999999 666 9999999999999999999999999874
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=5.9e-25 Score=281.22 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=103.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...+++.+.+. +..+..+||||+++..++.|...|.. .++++..+|| .+.++++..+..+|+.|
T Consensus 406 ~~~K~~ai~~~i~~~-~~~~~pvLIft~s~~~se~ls~~L~~----~gi~~~~L~a-----~~~~~E~~ii~~ag~~g-- 473 (762)
T TIGR03714 406 LPEKLMATLEDVKEY-HETGQPVLLITGSVEMSEIYSELLLR----EGIPHNLLNA-----QNAAKEAQIIAEAGQKG-- 473 (762)
T ss_pred HHHHHHHHHHHHHHH-hhCCCCEEEEECcHHHHHHHHHHHHH----CCCCEEEecC-----CChHHHHHHHHHcCCCC--
Confidence 356889999888765 34577899999999999999999998 6899999999 88888888887777777
Q ss_pred eEEEEecccccCCCCC---------CCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEe
Q 000174 782 TLLVATSVAEEGLDIR---------QCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIE 833 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip---------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~ 833 (1931)
.|+|||++++||+||+ ++++||+|++|..... +||+|||||.|..+ ++++.
T Consensus 474 ~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 474 AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEc
Confidence 6999999999999999 9999999999999877 99999999999874 34444
No 89
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=9.6e-25 Score=289.54 Aligned_cols=297 Identities=21% Similarity=0.237 Sum_probs=197.8
Q ss_pred HHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC----cEE
Q 000174 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY----VVG 380 (1931)
Q Consensus 306 ~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l----~v~ 380 (1931)
.+-.+.+..+.+ +++|+.++||||||.++.+++.+... ...+++|++||+++|.|.++.+.+.++. .|+
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 344455566655 88999999999999999998765321 2347999999999999999999776544 444
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc-cCCCcHHHHHHHHHhhcCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA-VKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~-~~~~~~~~im~~~~~~~~~~~ 459 (1931)
...++... .-...+|+|+|+++|++++... ..++++++|||||+|.. ....-.-..+..+....+ .
T Consensus 82 y~vr~~~~----------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr--~ 148 (812)
T PRK11664 82 YRMRAESK----------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLR--D 148 (812)
T ss_pred EEecCccc----------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCC--c
Confidence 44443221 1135689999999999998864 57899999999999973 332111122223332222 2
Q ss_pred CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHH
Q 000174 460 RPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEV 538 (1931)
Q Consensus 460 ~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~ 538 (1931)
..++++||||+.. . .+..++. ..+.....+ ..|.+ ..|.....
T Consensus 149 ~lqlilmSATl~~------------~--~l~~~~~~~~~I~~~gr-------~~pV~--~~y~~~~~------------- 192 (812)
T PRK11664 149 DLKLLIMSATLDN------------D--RLQQLLPDAPVIVSEGR-------SFPVE--RRYQPLPA------------- 192 (812)
T ss_pred cceEEEEecCCCH------------H--HHHHhcCCCCEEEecCc-------cccce--EEeccCch-------------
Confidence 3789999999752 0 1223232 111111000 00100 00000000
Q ss_pred HHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 000174 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQND 618 (1931)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~ 618 (1931)
.
T Consensus 193 -----------------------------------------------------------------~-------------- 193 (812)
T PRK11664 193 -----------------------------------------------------------------H-------------- 193 (812)
T ss_pred -----------------------------------------------------------------h--------------
Confidence 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhccc
Q 000174 619 ERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVA 698 (1931)
Q Consensus 619 ~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~ 698 (1931)
.++.
T Consensus 194 -------------~~~~--------------------------------------------------------------- 197 (812)
T PRK11664 194 -------------QRFD--------------------------------------------------------------- 197 (812)
T ss_pred -------------hhHH---------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 699 DGKVTPKV-QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 699 ~~~~s~Kv-~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
..+ ..+..++. .....+|||++++..++.+++.|..... .++.+..+|| ++++.+|+++++.|+
T Consensus 198 -----~~v~~~l~~~l~----~~~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg-----~l~~~eq~~~~~~~~ 262 (812)
T PRK11664 198 -----EAVARATAELLR----QESGSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYG-----ALSLAEQQKAILPAP 262 (812)
T ss_pred -----HHHHHHHHHHHH----hCCCCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeC-----CCCHHHHHHHhcccc
Confidence 000 01112221 1246899999999999999999986211 3678999999 999999999999999
Q ss_pred cCCceEEEEecccccCCCCCCCCEEEEcCCCCC------------------HHHHHHhhccCCCCCCc
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKT------------------VLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s------------------~~~yiQr~GRa~R~Gs~ 827 (1931)
+|+.+|||||+|+|+|||||+|++||+++++.. -.+|+||+|||||.+..
T Consensus 263 ~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G 330 (812)
T PRK11664 263 AGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPG 330 (812)
T ss_pred CCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCc
Confidence 999999999999999999999999999877653 35899999999997443
No 90
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.93 E-value=4.9e-25 Score=258.92 Aligned_cols=328 Identities=19% Similarity=0.210 Sum_probs=233.6
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHh-c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAK-K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l-~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..-++..|+..+.|.|.-+++.-+ + .|.+|+.+|+||||++.-+.=...+. +.+++.|||||.++|++|-++.
T Consensus 206 k~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l-----~~g~KmlfLvPLVALANQKy~d 280 (830)
T COG1202 206 KRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLL-----SGGKKMLFLVPLVALANQKYED 280 (830)
T ss_pred HHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHH-----hCCCeEEEEehhHHhhcchHHH
Confidence 356777899999999999999954 4 99999999999999999885333332 2467799999999999999999
Q ss_pred HHHH---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC---CcH
Q 000174 371 IREQ---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---HPY 444 (1931)
Q Consensus 371 l~~~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---~~~ 444 (1931)
|+.. +|+.+.+-.|...........-..--..++|+|+||+-+--+|+.| -.+.+++.+|+||.|.+-+. +..
T Consensus 281 F~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RL 359 (830)
T COG1202 281 FKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRL 359 (830)
T ss_pred HHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccch
Confidence 9874 4788877777654322111000111247899999999998778777 67999999999999998752 223
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccch
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
.-.+..+....+ ..|.++||||..| + ..|...|++....+.. -|.|-+..+.+....
T Consensus 360 dGLI~RLr~l~~---~AQ~i~LSATVgN------p-------~elA~~l~a~lV~y~~-------RPVplErHlvf~~~e 416 (830)
T COG1202 360 DGLIGRLRYLFP---GAQFIYLSATVGN------P-------EELAKKLGAKLVLYDE-------RPVPLERHLVFARNE 416 (830)
T ss_pred hhHHHHHHHhCC---CCeEEEEEeecCC------h-------HHHHHHhCCeeEeecC-------CCCChhHeeeeecCc
Confidence 333444433333 3789999999764 2 1344556665554421 223333222221100
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
.
T Consensus 417 -------------------------~------------------------------------------------------ 417 (830)
T COG1202 417 -------------------------S------------------------------------------------------ 417 (830)
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
T Consensus 418 -------------------------------------------------------------------------------- 417 (830)
T COG1202 418 -------------------------------------------------------------------------------- 417 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHH-----hcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccC
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLK-----YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHN 759 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~-----~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~ 759 (1931)
.|...+.++.+. ....-..++|||+++|..|..|+.+|.. .|+++..+|+
T Consensus 418 -------------------eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~----kG~~a~pYHa-- 472 (830)
T COG1202 418 -------------------EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTG----KGLKAAPYHA-- 472 (830)
T ss_pred -------------------HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhc----CCcccccccC--
Confidence 000000000000 0012246799999999999999999998 7999999999
Q ss_pred CCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEE---EcCCCC-CHHHHHHhhccCCCCCC----cEEEE
Q 000174 760 NSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVI---RFDLAK-TVLAYIQSRGRARKPGS----DYILM 831 (1931)
Q Consensus 760 ~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI---~fD~p~-s~~~yiQr~GRa~R~Gs----~~ivl 831 (1931)
+++..+|+.+-..|.++++.++|+|.+++-|+|+|+-.+|. -...-| |+..|.|..|||||.+- +.++|
T Consensus 473 ---GL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 473 ---GLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred ---CCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 99999999999999999999999999999999999877652 244455 99999999999999763 25667
Q ss_pred EecCC
Q 000174 832 IERGN 836 (1931)
Q Consensus 832 v~~~~ 836 (1931)
++++.
T Consensus 550 vepg~ 554 (830)
T COG1202 550 VEPGK 554 (830)
T ss_pred ecCCh
Confidence 77664
No 91
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.93 E-value=4.8e-25 Score=288.24 Aligned_cols=163 Identities=24% Similarity=0.293 Sum_probs=129.6
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
-++..++.++.+.|++++..... +|+||++|||||||+++++.|...+.. .+.++|+|||+++|+.|.+++++
T Consensus 23 i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~-----~~~k~vYivPlkALa~Ek~~~~~ 97 (766)
T COG1204 23 ILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE-----GGGKVVYIVPLKALAEEKYEEFS 97 (766)
T ss_pred HhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh-----cCCcEEEEeChHHHHHHHHHHhh
Confidence 34445556899999999988765 899999999999999999998887764 25679999999999999999999
Q ss_pred --HHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC--c-HHHH
Q 000174 373 --EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH--P-YSLV 447 (1931)
Q Consensus 373 --~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~--~-~~~i 447 (1931)
+.+|++|.+.+|+..... ..+.+++|+|+||+.+...+++....+..+++||+||+|.+.+.. + ...+
T Consensus 98 ~~~~~GirV~~~TgD~~~~~-------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~i 170 (766)
T COG1204 98 RLEELGIRVGISTGDYDLDD-------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESI 170 (766)
T ss_pred hHHhcCCEEEEecCCcccch-------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhH
Confidence 567999999999876432 224789999999999999898877788999999999999998641 2 1222
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+...... ....|++|||||..|
T Consensus 171 v~r~~~~---~~~~rivgLSATlpN 192 (766)
T COG1204 171 VARMRRL---NELIRIVGLSATLPN 192 (766)
T ss_pred HHHHHhh---CcceEEEEEeeecCC
Confidence 2222222 122799999999764
No 92
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=1.2e-24 Score=297.45 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=102.8
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
+.+....+|+++|+.+++.++. +++++.+|||+|||. |++++...+.. .+.+++||+||++|+.|++++++.+
T Consensus 71 f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~~l~~l 144 (1171)
T TIGR01054 71 FKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAEKISSL 144 (1171)
T ss_pred HHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHHHHHHH
Confidence 3344556899999999999998 999999999999997 55555443332 2568999999999999999999986
Q ss_pred c---CCcE---EEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 375 T---GYVV---GHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 375 ~---~l~v---~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
. ++.+ +.++|+..... ....|..... +++|||+||++|.+.+.. +.. +++++|+||||++++
T Consensus 145 ~~~~~i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 145 AEKAGVGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHhcCCceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhh
Confidence 5 4443 35778775432 2233444433 589999999999988765 222 899999999999987
No 93
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=254.09 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=95.7
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQ 798 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~ 798 (1931)
..-.++||||.++..++-|.+++.+... ..+.++++|| +....+|++.|+.|+++.+++||||||++|||||..
T Consensus 503 h~mdkaiifcrtk~dcDnLer~~~qkgg-~~~scvclhg-----DrkP~Erk~nle~Fkk~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 503 HAMDKAIIFCRTKQDCDNLERMMNQKGG-KHYSCVCLHG-----DRKPDERKANLESFKKFDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hccCceEEEEeccccchHHHHHHHHcCC-ccceeEEEec-----CCChhHHHHHHHhhhhcCeEEEEEehhhhccccccC
Confidence 3467999999999999999999988544 6799999999 999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 799 CNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 799 ~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+-.+||.-+|..-..|+||+||.||+..-
T Consensus 577 ~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 577 LPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred CceEEEEecCcccchhhhhhhccchhhhc
Confidence 99999999999999999999999987654
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.1e-23 Score=259.32 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=123.8
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
.+-..-.++||..|+.++..+.. -|-+++++.|||||+++++.+...+. .+..+.++|||--||.|.
T Consensus 254 ~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~------~G~Q~ALMAPTEILA~QH 327 (677)
T COG1200 254 KFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE------AGYQAALMAPTEILAEQH 327 (677)
T ss_pred HHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH------cCCeeEEeccHHHHHHHH
Confidence 33334457899999999999876 35699999999999999999888776 367899999999999999
Q ss_pred HHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 368 AEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 368 ~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
++.+.+++ +++|..++|.+.... +++....+.. ..+|||+|.-.+. ..+.+.++.|+|+||=||..-.
T Consensus 328 ~~~~~~~l~~~~i~V~lLtG~~kgk~-r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQHRFGV~-- 399 (677)
T COG1200 328 YESLRKWLEPLGIRVALLTGSLKGKA-RKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQHRFGVH-- 399 (677)
T ss_pred HHHHHHHhhhcCCeEEEeecccchhH-HHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEeccccccHH--
Confidence 99999986 789999999987654 2333333444 5999999998776 4467899999999999999642
Q ss_pred HHHHHHHHHhhcCCCC-CcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTTSKEK-RPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~-~p~iLgLTATP~~ 472 (1931)
+- ..+.. +.. .|++|.|||||+.
T Consensus 400 --QR-~~L~~---KG~~~Ph~LvMTATPIP 423 (677)
T COG1200 400 --QR-LALRE---KGEQNPHVLVMTATPIP 423 (677)
T ss_pred --HH-HHHHH---hCCCCCcEEEEeCCCch
Confidence 11 11111 223 5999999999994
No 95
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.92 E-value=1.7e-23 Score=264.75 Aligned_cols=449 Identities=16% Similarity=0.128 Sum_probs=248.5
Q ss_pred CCCCCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcC-CCcEEEEEeCChhHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQN-KKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~-~~~~vL~LvPT~~Lv~Q 366 (1931)
.-...++|+|++++..+.+ ..+|++.++|+|||+..+..|..++.+.+..+ --.+.|||+|. .|+.-
T Consensus 234 ~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~n 312 (776)
T KOG0390|consen 234 LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNN 312 (776)
T ss_pred cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHH
Confidence 4456799999999999743 35899999999999999999998888642110 11679999995 79999
Q ss_pred HHHHHHHHcC---CcEEEEeCCCcccccchHHHHhhc---CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 367 QAEVIREQTG---YVVGHYCGEMGQDFWDAQRWQREF---DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 367 ~~~~l~~~~~---l~v~~~~G~~~~~~~~~~~w~~~~---~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
|.++|.+|.+ +....++|.....-+....|.... -..-|++.+++.+.+.... +....+++||+||+|+.++
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc
Confidence 9999999986 345556665543111222333221 2567899999999876655 6788999999999999998
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC---CeEEEecchHHHhhhCCCCceeE
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD---SVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~---~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
.. ..++.....-..|++++||+||.+. .+.+.-++++ +.+.. ......+....|....
T Consensus 391 ~~------s~~~kaL~~l~t~rRVLLSGTp~QN-----------dl~EyFnlL~fvrP~~Lg--s~~sf~k~~~~~i~~~ 451 (776)
T KOG0390|consen 391 SD------SLTLKALSSLKTPRRVLLTGTPIQN-----------DLKEYFNLLDFVRPGFLG--SISSFKKKFEIPILRG 451 (776)
T ss_pred hh------hHHHHHHHhcCCCceEEeeCCcccc-----------cHHHHHHHHhhcChhhcc--chHHHHHHhhcccccc
Confidence 43 2333333344569999999999962 2223333332 21111 1112222222222111
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhccc-ccccchhhHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVS-ERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
..-+.........+.+..+......++. ++.. ..+ ...++..+... --.....-..+...+.... ..
T Consensus 452 ~~~~~s~e~~~~~~rl~eL~~~t~~fi~---rrt~-~il-------~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~ 519 (776)
T KOG0390|consen 452 RDADASEEDREREERLQELRELTNKFIL---RRTG-DIL-------LKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM 519 (776)
T ss_pred cCCCcchhhhhhHHHHHHHHHHHHhhee---eccc-chh-------hhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh
Confidence 1111111100111222222222211111 0000 000 00000000000 0000000001111111100 00
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCC-ccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGG-TNEIEEG 675 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~l~~~ 675 (1931)
.. ......-...++.++|..-.....+.. ........ ...+.+.
T Consensus 520 ~~------------------------~~~~~l~~~~~L~k~cnhP~L~~~~~~-----------~~~e~~~~~~~~~~~~ 564 (776)
T KOG0390|consen 520 RT------------------------LKGYALELITKLKKLCNHPSLLLLCEK-----------TEKEKAFKNPALLLDP 564 (776)
T ss_pred hh------------------------hhcchhhHHHHHHHHhcCHHhhccccc-----------ccccccccChHhhhcc
Confidence 00 000011122445554442111100000 00000000 0000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
. .+......+..+.|+..|+.+|...+.....++.+-.+.+.+.+.+..+.+- .|+.+..+
T Consensus 565 ~---------------~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~----~g~~~~rL 625 (776)
T KOG0390|consen 565 G---------------KLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW----RGYEVLRL 625 (776)
T ss_pred c---------------ccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh----cCceEEEE
Confidence 0 0011122334578999999998665433444555555566666666666554 68999999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCc---eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE--
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRV---TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL-- 830 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~---~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv-- 830 (1931)
+| .|+..+|+.+++.|++... -+|.+|-++++||++-+++.||.||++|||..-.|+++||+|.||+..+
T Consensus 626 dG-----~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~i 700 (776)
T KOG0390|consen 626 DG-----KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYI 700 (776)
T ss_pred cC-----CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEE
Confidence 99 9999999999999995443 3778889999999999999999999999999999999999999999333
Q ss_pred --EEecCChhHH
Q 000174 831 --MIERGNLSHA 840 (1931)
Q Consensus 831 --lv~~~~~~~~ 840 (1931)
++.+|..+..
T Consensus 701 YrLlatGtiEEk 712 (776)
T KOG0390|consen 701 YRLLATGTIEEK 712 (776)
T ss_pred EEeecCCCchHH
Confidence 3355655443
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=3.8e-24 Score=271.84 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+.+. +..+..+||||+++..++.|...|.+ .+++...+|| . +.+|+..+.+|+.+...
T Consensus 388 ~~k~~ai~~~i~~~-~~~grpvLV~t~si~~se~ls~~L~~----~gi~~~~Lna-----~--q~~rEa~ii~~ag~~g~ 455 (745)
T TIGR00963 388 EEKWKAVVDEIKER-HAKGQPVLVGTTSVEKSELLSNLLKE----RGIPHNVLNA-----K--NHEREAEIIAQAGRKGA 455 (745)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEEeeC-----C--hHHHHHHHHHhcCCCce
Confidence 45888888877654 45678899999999999999999998 6899999999 5 77999999999999999
Q ss_pred EEEEecccccCCCCCC-------CCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 783 LLVATSVAEEGLDIRQ-------CNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~-------~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
|+|||++|+||+||+. .-+||++++|.|...|.||+|||||.|.. ..+++..+
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 9999999999999999 55999999999999999999999999987 34454433
No 97
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=5.7e-23 Score=272.83 Aligned_cols=347 Identities=18% Similarity=0.218 Sum_probs=238.8
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
..++.+.+...|+.||.+|+..+.+ +|+||..+||||||.+|++||.+.+.+ .+..++|+|-||++|++.|.+.|
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~----~~~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR----DPSARALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh----CcCccEEEEechhhhHhhHHHHH
Confidence 3567777888899999999999999 899999999999999999999988774 34558999999999999999999
Q ss_pred HHHc---C--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc----cccccceeEEEEeCCCcccCC-
Q 000174 372 REQT---G--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS----IIKMEAINLLILDECHHAVKK- 441 (1931)
Q Consensus 372 ~~~~---~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~----~l~l~~i~lLV~DEaH~~~~~- 441 (1931)
+++. + +.+..++|+..... ...+ ....++||++||.+|.-++-+. .+.+.++++||+||+|-..+-
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~--r~~~--~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEE--RRAI--IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHH--HHHH--HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 9865 4 77888999876422 1111 2368999999999998754332 235678999999999998862
Q ss_pred -CcHHHHHHHHHhhcCC-CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEE
Q 000174 442 -HPYSLVMSEFYHTTSK-EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVE 519 (1931)
Q Consensus 442 -~~~~~im~~~~~~~~~-~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 519 (1931)
.-.+.+++.+...+.. ...|+++..|||..+.+. ..+.+++....... -....+.....++.
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e------------~~~~l~~~~f~~~v----~~~g~~~~~~~~~~ 275 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE------------FAEELFGRDFEVPV----DEDGSPRGLRYFVR 275 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH------------HHHHhcCCcceeec----cCCCCCCCceEEEE
Confidence 2345556666555432 345999999999775221 12222221111100 00122223333333
Q ss_pred eccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHH
Q 000174 520 YDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGEL 599 (1931)
Q Consensus 520 y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~l 599 (1931)
+.+........
T Consensus 276 ~~p~~~~~~~~--------------------------------------------------------------------- 286 (851)
T COG1205 276 REPPIRELAES--------------------------------------------------------------------- 286 (851)
T ss_pred eCCcchhhhhh---------------------------------------------------------------------
Confidence 33211000000
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccc
Q 000174 600 GQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLD 679 (1931)
Q Consensus 600 g~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~ 679 (1931)
T Consensus 287 -------------------------------------------------------------------------------- 286 (851)
T COG1205 287 -------------------------------------------------------------------------------- 286 (851)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHH----HHHhcCCCCCCceeEEE
Q 000174 680 SHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLP----KVFAELPSLSFVKSASL 755 (1931)
Q Consensus 680 ~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~----~~L~~~~~l~~~~~~~l 755 (1931)
....+...+-.+... ....+.++|+|+.++..+..++ ..+......-...+...
T Consensus 287 ---------------------~r~s~~~~~~~~~~~-~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~ 344 (851)
T COG1205 287 ---------------------IRRSALAELATLAAL-LVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTY 344 (851)
T ss_pred ---------------------cccchHHHHHHHHHH-HHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeec
Confidence 000000000001100 1234789999999999999996 23322210012446666
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc-EEEEEe
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD-YILMIE 833 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~-~ivlv~ 833 (1931)
+| ++...+|.++...|+.|+..++|+|++++-||||.+++.||.+..|. +..++.||.|||||.++. .++++.
T Consensus 345 ~~-----~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 345 RA-----GLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred cc-----cCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEe
Confidence 77 89999999999999999999999999999999999999999999999 999999999999999965 444555
Q ss_pred cCChhH
Q 000174 834 RGNLSH 839 (1931)
Q Consensus 834 ~~~~~~ 839 (1931)
..+.-+
T Consensus 420 ~~~~~d 425 (851)
T COG1205 420 RSDPLD 425 (851)
T ss_pred CCCccc
Confidence 444433
No 98
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=5.3e-23 Score=263.00 Aligned_cols=413 Identities=18% Similarity=0.194 Sum_probs=288.1
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
...+.+-|..+++.+.. ...++.+.||||||.+|+-+|...+.+ ++.+|||||.+.|..|..+.|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc------CCEEEEEeccccchHHHHHHHHHHh
Confidence 35789999999999866 457999999999999999999988873 5789999999999999999999999
Q ss_pred CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC---CCcH--HHHHH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK---KHPY--SLVMS 449 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~---~~~~--~~im~ 449 (1931)
+.++.++|++.+... +...|.+.. ...+|||+|...++ .++.++++||+||-|...- +.++ +..+.
T Consensus 270 g~~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 270 GAKVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred CCChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 999999999987543 678899987 48999999999997 7899999999999998751 1111 22222
Q ss_pred HHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC---eEE--EecchHHHhhhCCCCceeEEEeccch
Q 000174 450 EFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS---VVC--TIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 450 ~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~---~i~--t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
.+.. ......+++-||||. ||+.... ... ...++.. ....|.-.++......
T Consensus 342 ~~Ra---~~~~~pvvLgSATPS-----------------LES~~~~~~g~y~~~~L~~R~~---~a~~p~v~iiDmr~e~ 398 (730)
T COG1198 342 VLRA---KKENAPVVLGSATPS-----------------LESYANAESGKYKLLRLTNRAG---RARLPRVEIIDMRKEP 398 (730)
T ss_pred HHHH---HHhCCCEEEecCCCC-----------------HHHHHhhhcCceEEEEcccccc---ccCCCcceEEeccccc
Confidence 2221 122345777799996 3332221 111 1122211 2234555555543321
Q ss_pred ------hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHH
Q 000174 525 ------SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGE 598 (1931)
Q Consensus 525 ------~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~ 598 (1931)
....+.+.|++....-++.+...+++....++.|++||....|+++.....-+... -.-
T Consensus 399 ~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~---------------~~L 463 (730)
T COG1198 399 LETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKAT---------------GQL 463 (730)
T ss_pred cccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCC---------------Cee
Confidence 23456666766666666677788899999899999988877776654322111100 000
Q ss_pred HhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccc
Q 000174 599 LGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELL 678 (1931)
Q Consensus 599 lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~ 678 (1931)
.++||.+. ...+
T Consensus 464 ~CH~Cg~~--------------------------------------------------------------------~~~p 475 (730)
T COG1198 464 RCHYCGYQ--------------------------------------------------------------------EPIP 475 (730)
T ss_pred EeCCCCCC--------------------------------------------------------------------CCCC
Confidence 01111100 0000
Q ss_pred ccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEcc
Q 000174 679 DSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGH 758 (1931)
Q Consensus 679 ~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~ 758 (1931)
. . -..-+...|+++- ..++.+.+.|..+ +++.++..+.+.
T Consensus 476 ~-----------------------------------~-Cp~Cgs~~L~~~G--~GterieeeL~~~--FP~~rv~r~d~D 515 (730)
T COG1198 476 Q-----------------------------------S-CPECGSEHLRAVG--PGTERIEEELKRL--FPGARIIRIDSD 515 (730)
T ss_pred C-----------------------------------C-CCCCCCCeeEEec--ccHHHHHHHHHHH--CCCCcEEEEccc
Confidence 0 0 0111223444443 3455566666553 367888888882
Q ss_pred CCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------------CHHHHHHhhccCCCCCC
Q 000174 759 NNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------------TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 759 ~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------------s~~~yiQr~GRa~R~Gs 826 (1931)
.......-+..+..|..|+.+|||.|++++.|+|+|++++|...|... +...++|-.|||||.+.
T Consensus 516 ---tt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~ 592 (730)
T COG1198 516 ---TTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK 592 (730)
T ss_pred ---cccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC
Confidence 123344567889999999999999999999999999999986544332 34457899999999999
Q ss_pred cEEEEEecCChhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccC
Q 000174 827 DYILMIERGNLSHATFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVD 876 (1931)
Q Consensus 827 ~~ivlv~~~~~~~~~~l~~~~~~e~~l~~~~i~r~~l~~~~~~~~~~~~~ 876 (1931)
.+.+++++.+++|..+.......++.+.++++..+....++|+.++..+.
T Consensus 593 ~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~ 642 (730)
T COG1198 593 PGEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVI 642 (730)
T ss_pred CCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeE
Confidence 99999999999999988888888889988888888888899888877553
No 99
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.90 E-value=5.2e-25 Score=229.26 Aligned_cols=124 Identities=37% Similarity=0.548 Sum_probs=99.5
Q ss_pred CHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhc
Q 000174 1605 DRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLR 1684 (1931)
Q Consensus 1605 ~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~ 1684 (1931)
|+.||.+||||+||.+...++|||||||||+||+++|++|||+++|. ++|.|+.+|+.+|++++|+.+|.++||+++|+
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 68899999999999755558999999999999999999999999555 89999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCC
Q 000174 1685 HGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754 (1931)
Q Consensus 1685 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l 1754 (1931)
.+.+... ......+|+++|+|||+|||||+|+|++. +.+|+...+
T Consensus 80 ~~~~~~~-----------------------~~~~~~~~vlad~feAliGAiyld~G~~~--a~~~i~~~i 124 (128)
T PF14622_consen 80 WGPGEEK-----------------------SGGSGSDKVLADVFEALIGAIYLDSGFEA--ARKFIQKLI 124 (128)
T ss_dssp --HHHHH-----------------------TTGGG-HHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHH
T ss_pred hCccHhh-----------------------cCCCCCccHHHhHHHHHHHHHHHHcCHHH--HHHHHHHHh
Confidence 8554321 12345689999999999999999999874 445555443
No 100
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=99.89 E-value=7.8e-24 Score=203.92 Aligned_cols=85 Identities=44% Similarity=0.838 Sum_probs=64.5
Q ss_pred hHHHHHHHhhcCCCCCCCccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 000174 897 AVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMG 976 (1931)
Q Consensus 897 Ai~ll~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~Akr~AAf~Ac~~L~~~G 976 (1931)
|+++|||||++||+|.|+.++|.|.++..+ ..|+|+|+||.++|++.++|++|+||++|||+|||+||++||++|
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~-----~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIG-----SGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE-------G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcC-----CcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 799999999999999999999999998876 589999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 000174 977 AFTDMLLPDK 986 (1931)
Q Consensus 977 ~ldd~L~P~~ 986 (1931)
+|||||+|..
T Consensus 76 ~ldd~L~P~~ 85 (90)
T PF03368_consen 76 ELDDHLLPIS 85 (90)
T ss_dssp S-TTTS--HH
T ss_pred CCccccCCCC
Confidence 9999999964
No 101
>PRK12371 ribonuclease III; Reviewed
Probab=99.89 E-value=9.5e-24 Score=240.94 Aligned_cols=133 Identities=31% Similarity=0.394 Sum_probs=113.5
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCC--CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQE--TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQ 1448 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~--~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~ 1448 (1931)
.+|++.+||.|.+..+| +||||+|+.. ..||||||||||+||+++++.+||.+||+++||.||.+|+.+|||.+|+.
T Consensus 13 ~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~La~ 92 (235)
T PRK12371 13 SILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAETCAA 92 (235)
T ss_pred HHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHHHHH
Confidence 46788899999776655 9999999865 46999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcc
Q 000174 1449 YALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYR 1528 (1931)
Q Consensus 1449 ~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1528 (1931)
+|.++||++||+..+ +... . . .
T Consensus 93 ia~~lgL~~~i~~~~---------~~~~---------------------------------------~--------~--~ 114 (235)
T PRK12371 93 IADEIGLHDLIRTGS---------DVKK---------------------------------------L--------T--G 114 (235)
T ss_pred HHHHCCcHHHhccCc---------chhh---------------------------------------c--------C--C
Confidence 999999999998643 0000 0 0 0
Q ss_pred ccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1529 VLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1529 ~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
...+|.+||+|||||||+|+|+|.+.|..|+..+
T Consensus 115 ~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~ 148 (235)
T PRK12371 115 KRLLNVRADVVEALIAAIYLDGGLEAARPFIQRY 148 (235)
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1135899999999999999999999999998554
No 102
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.8e-23 Score=258.89 Aligned_cols=422 Identities=17% Similarity=0.146 Sum_probs=261.1
Q ss_pred CCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 300 PEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
..-++++||...++|+.. -|.|++++||.|||++.+.+|.++++.. +-.++-+||||+..|++ |..+|..|
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K---~~~GP~LvivPlstL~N-W~~Ef~kW 466 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHK---QMQGPFLIIVPLSTLVN-WSSEFPKW 466 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHc---ccCCCeEEeccccccCC-chhhcccc
Confidence 345899999999999876 4689999999999999999998887753 33456899999999987 99999998
Q ss_pred c-CCcEEEEeCCCcccccchHHHHh-hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHH
Q 000174 375 T-GYVVGHYCGEMGQDFWDAQRWQR-EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 452 (1931)
Q Consensus 375 ~-~l~v~~~~G~~~~~~~~~~~w~~-~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~ 452 (1931)
. .+..+.+.|.... ++..... .....+|+++|++-+.. ....+.--+|.++||||.|+|.+.+ .++-..+.
T Consensus 467 aPSv~~i~YkGtp~~---R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~ 539 (1157)
T KOG0386|consen 467 APSVQKIQYKGTPQQ---RSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLN 539 (1157)
T ss_pred ccceeeeeeeCCHHH---HhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhh
Confidence 6 4667777775432 2222222 12588999999998875 3444566789999999999998743 22222221
Q ss_pred hhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEE---EeccchhhhHH
Q 000174 453 HTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVV---EYDKAASLWSL 529 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~---~y~~~~~~~~l 529 (1931)
. .-..+++|+||+||.+.+ ..++..|-+++-..|+. ....+..+...|....- ..... .-
T Consensus 540 t---~y~~q~RLLLTGTPLQN~--------LpELWaLLNFlLP~IFn--S~~~FeqWFN~PFantGek~eLteE----Et 602 (1157)
T KOG0386|consen 540 T---HYRAQRRLLLTGTPLQNN--------LPELWALLNFLLPNIFN--SCKAFEQWFNQPFANTGEKVELTEE----ET 602 (1157)
T ss_pred c---cccchhhhhhcCChhhhc--------cHHHHHHHHHhccchhh--hHhHHHHHhhhhhhhcCCcccccch----HH
Confidence 1 112378899999998621 12333333333333332 22333333333321100 00000 00
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQ 609 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~ 609 (1931)
.-.|+++..-+.++ +++|.+.++...++.+...+..|-..-++-..|+..+
T Consensus 603 lLIIrRLHkVLRPF-----------------------------lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~ 653 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPF-----------------------------LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQ 653 (1157)
T ss_pred HHHHHHHHHhhhHH-----------------------------HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHH
Confidence 00111111111111 1234445555666666666655543333322222211
Q ss_pred HHHHHhhhhhhhhhhhhHH-HHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 610 SFLTALQNDERANYQLDVK-FQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 610 ~~l~~l~~~~~~~~~~~~~-~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
..-.-+............. -....++++|+.--.. +. ++++
T Consensus 654 ~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf-------------------------~~-------------ve~~ 695 (1157)
T KOG0386|consen 654 NKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLF-------------------------AN-------------VENS 695 (1157)
T ss_pred hCCCCCcCchhccccchhhhhHhHHHHHhcCCchhh-------------------------hh-------------hccc
Confidence 0000000000000000000 0122344444411000 00 0000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHH
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQ 768 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~ 768 (1931)
....... ......+.|+..|-.+|-+. ...+++++.|++.......+..+|.- ..++...+.| .....+
T Consensus 696 ~~~~~~~-~dL~R~sGKfELLDRiLPKL-katgHRVLlF~qMTrlmdimEdyL~~----~~~kYlRLDG-----~TK~~e 764 (1157)
T KOG0386|consen 696 YTLHYDI-KDLVRVSGKFELLDRILPKL-KATGHRVLLFSQMTRLMDILEDYLQI----REYKYLRLDG-----QTKVEE 764 (1157)
T ss_pred cccccCh-hHHHHhccHHHHHHhhhHHH-HhcCcchhhHHHHHHHHHHHHHHHhh----hhhheeeecC-----Ccchhh
Confidence 0000000 01124578999998888887 46789999999999999999999986 7899999999 888999
Q ss_pred HHHHHHHhhcCCc---eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 769 MQETIAKFRDGRV---TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 769 R~~~l~~Fr~G~~---~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|-..++.|..... .+|.+|.+++.|+|++.++.||.||..|||..+.|+..||+|+|++
T Consensus 765 Rg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 765 RGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred HHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 9999999995543 3889999999999999999999999999999999999999999988
No 103
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.89 E-value=1.1e-23 Score=236.42 Aligned_cols=133 Identities=36% Similarity=0.535 Sum_probs=114.9
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCC----CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQET----FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~----~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L 1446 (1931)
..|.+.+||+|.+..+| +||||+|+... .|||||||||||||.++++.+||.+||+.+||.||.+|+.+||+..|
T Consensus 9 ~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~~L 88 (235)
T COG0571 9 EALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEESL 88 (235)
T ss_pred HHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 56788899999987666 99999999754 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCC
Q 000174 1447 YQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSS 1526 (1931)
Q Consensus 1447 ~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1526 (1931)
+.+|..+||+.||+..+... . ..+
T Consensus 89 a~ia~~l~l~~~l~lg~ge~------------------------------------------------~--------~gg 112 (235)
T COG0571 89 AEIARELGLGDYLRLGKGEE------------------------------------------------K--------SGG 112 (235)
T ss_pred HHHHHHhCccchhhccCChh------------------------------------------------h--------cCC
Confidence 99999999999998754110 0 001
Q ss_pred ccccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1527 YRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1527 ~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+ .++.+||+|||||||+|+|+|.+.|.+|+..+
T Consensus 113 ~~--~~silaD~~EAligAiylD~g~~~~~~~i~~l 146 (235)
T COG0571 113 RR--RESILADAFEALIGAIYLDSGLEAARKFILKL 146 (235)
T ss_pred CC--chhHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 11 46899999999999999999999999987433
No 104
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.89 E-value=9.5e-22 Score=244.14 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=145.2
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
.-.||.||...+.|+.. -|.|+++++|+|||+..+.++.|+.-. .+..+.-||||||..+.+ |.-+|++|+
T Consensus 613 rGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACe---egnWGPHLIVVpTsviLn-WEMElKRwc 688 (1958)
T KOG0391|consen 613 RGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACE---EGNWGPHLIVVPTSVILN-WEMELKRWC 688 (1958)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhc---ccCCCCceEEeechhhhh-hhHHHhhhC
Confidence 45689999999999854 578999999999999999888777653 355667899999988876 999999998
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHT 454 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~ 454 (1931)
++++-.|+|......-+++.|.+- +..||.|++|..++..+.. ++-.+|.++|+||||++.+- -.+....++..
T Consensus 689 PglKILTYyGs~kErkeKRqgW~kP-naFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf--ksqrWQAllnf 763 (1958)
T KOG0391|consen 689 PGLKILTYYGSHKERKEKRQGWAKP-NAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF--KSQRWQALLNF 763 (1958)
T ss_pred CcceEeeecCCHHHHHHHhhcccCC-CeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch--hHHHHHHHhcc
Confidence 899999999876655555667532 4679999999999877654 67789999999999999862 12222333332
Q ss_pred cCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEE
Q 000174 455 TSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVE 519 (1931)
Q Consensus 455 ~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~ 519 (1931)
+..|+|+||+||.+ +...+|..|..+|-..++ .....+..+...|...++.
T Consensus 764 ----nsqrRLLLtgTPLq--------NslmELWSLmhFLmP~~f--~shd~fk~wfsnPltgmiE 814 (1958)
T KOG0391|consen 764 ----NSQRRLLLTGTPLQ--------NSLMELWSLMHFLMPQTF--ASHDIFKPWFSNPLTGMIE 814 (1958)
T ss_pred ----chhheeeecCCchh--------hHHHHHHHHHHHhhchhh--hhhhhHHHHhcCcchhhcc
Confidence 33678999999985 333455555555555444 3445666777666554443
No 105
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.89 E-value=2.1e-21 Score=251.82 Aligned_cols=312 Identities=21% Similarity=0.235 Sum_probs=216.3
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.....-.+.-|+-|..||+.+++ -|=+||++.|-|||-+|+-++--... .++.|.|||||.-||.|
T Consensus 585 ~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~------~GKQVAvLVPTTlLA~Q 658 (1139)
T COG1197 585 EEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM------DGKQVAVLVPTTLLAQQ 658 (1139)
T ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc------CCCeEEEEcccHHhHHH
Confidence 334444456789999999999976 46799999999999999987654333 46889999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
.++.|++.+ +++|..++.=.+....+ .....+ -...+|||+|...|. ..+.+.+++|||+||-||..-.|
T Consensus 659 Hy~tFkeRF~~fPV~I~~LSRF~s~kE~~-~il~~la~G~vDIvIGTHrLL~-----kdv~FkdLGLlIIDEEqRFGVk~ 732 (1139)
T COG1197 659 HYETFKERFAGFPVRIEVLSRFRSAKEQK-EILKGLAEGKVDIVIGTHRLLS-----KDVKFKDLGLLIIDEEQRFGVKH 732 (1139)
T ss_pred HHHHHHHHhcCCCeeEEEecccCCHHHHH-HHHHHHhcCCccEEEechHhhC-----CCcEEecCCeEEEechhhcCccH
Confidence 999999876 45566665433322211 111111 237899999998775 56889999999999999998754
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee--EEEe
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV--VVEY 520 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~--~~~y 520 (1931)
+..++.+.. ...+|-|||||+... +...+. ...++.-..+.|... +..|
T Consensus 733 --KEkLK~Lr~------~VDvLTLSATPIPRT-------L~Msm~--------------GiRdlSvI~TPP~~R~pV~T~ 783 (1139)
T COG1197 733 --KEKLKELRA------NVDVLTLSATPIPRT-------LNMSLS--------------GIRDLSVIATPPEDRLPVKTF 783 (1139)
T ss_pred --HHHHHHHhc------cCcEEEeeCCCCcch-------HHHHHh--------------cchhhhhccCCCCCCcceEEE
Confidence 344444332 267999999999411 000100 111221122222211 0000
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHh
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELG 600 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg 600 (1931)
-...
T Consensus 784 V~~~---------------------------------------------------------------------------- 787 (1139)
T COG1197 784 VSEY---------------------------------------------------------------------------- 787 (1139)
T ss_pred EecC----------------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccc
Q 000174 601 QWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDS 680 (1931)
Q Consensus 601 ~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~ 680 (1931)
T Consensus 788 -------------------------------------------------------------------------------- 787 (1139)
T COG1197 788 -------------------------------------------------------------------------------- 787 (1139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCC
Q 000174 681 HVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNN 760 (1931)
Q Consensus 681 ~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~ 760 (1931)
++.+. --.++++. ..+.++-.-.+.+.+...+++.|+++- +..++++.||
T Consensus 788 ----------------------d~~~i-reAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV--PEarI~vaHG--- 837 (1139)
T COG1197 788 ----------------------DDLLI-REAILREL--LRGGQVFYVHNRVESIEKKAERLRELV--PEARIAVAHG--- 837 (1139)
T ss_pred ----------------------ChHHH-HHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC--CceEEEEeec---
Confidence 00000 00011111 235677777788888888888888862 6789999999
Q ss_pred CccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCc-EEEEEec
Q 000174 761 SQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSD-YILMIER 834 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~-~ivlv~~ 834 (1931)
.|+..+-++++.+|-+|+++|||||.+.|-|||||++|.+|.-+... -+.+..|-+||+||.+.+ |..|+.+
T Consensus 838 --QM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 838 --QMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred --CCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeec
Confidence 99999999999999999999999999999999999999999877654 889999999999998876 5455443
No 106
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=5.3e-22 Score=248.64 Aligned_cols=165 Identities=21% Similarity=0.309 Sum_probs=125.6
Q ss_pred cCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhh----cCCCcEEEEEeCChhHHHHHHHHH
Q 000174 298 KMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQR----QNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~----~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
-.++..+..+|.+++|.+.+ .|+|||+|||+|||-+|++.|++.+.+... ..+..++++|+|+++||....+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 36778899999999999998 899999999999999999999988886322 234568999999999999988888
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc----ccccceeEEEEeCCCcccCCCcH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI----IKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~----l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
.+.+ |++|..++|++... ......++|+|+||+.+ |.+.+.. --++.+.|||+||+|.+-++-
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R-- 254 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLT-------KTEIADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR-- 254 (1230)
T ss_pred hhhcccccceEEEecCcchhh-------HHHHHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcc--
Confidence 7754 89999999987532 22247899999999987 4444322 245789999999999997642
Q ss_pred HHHHHHHHhhc-----CCCCCcEEEEEeecCCC
Q 000174 445 SLVMSEFYHTT-----SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 445 ~~im~~~~~~~-----~~~~~p~iLgLTATP~~ 472 (1931)
...+..+..+. ......|++|||||..|
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN 287 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPN 287 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCC
Confidence 22222222221 12334899999999663
No 107
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=2e-21 Score=260.33 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=85.1
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
....+|||++++..++.+++.|.... +..+.+..+|| ++++.+|..+++. .|..+|||||+|+|+|||||++
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~-~~~~~VlpLhg-----~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI 356 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLN-LRHTEILPLYA-----RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGI 356 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcC-CCcceEeeccc-----CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcc
Confidence 45689999999999999999998732 23455788999 9999999999876 5788999999999999999999
Q ss_pred CEEEEcC---------------CCC---CHHHHHHhhccCCCCCCc
Q 000174 800 NVVIRFD---------------LAK---TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 800 ~lVI~fD---------------~p~---s~~~yiQr~GRa~R~Gs~ 827 (1931)
++||+++ +|. |..+|+||.|||||.+..
T Consensus 357 ~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G 402 (1294)
T PRK11131 357 KYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEG 402 (1294)
T ss_pred eEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCc
Confidence 9999986 343 557899999999998544
No 108
>PRK12372 ribonuclease III; Reviewed
Probab=99.89 E-value=2.1e-23 Score=245.18 Aligned_cols=132 Identities=30% Similarity=0.483 Sum_probs=112.7
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|+++|||.|.+..|| +||||+|+.. .||||||||||+||+|+++.|||.+||+++||.||.+|+.+|||.+|+.+|
T Consensus 4 ~~LEk~LGY~Fkn~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~IA 82 (413)
T PRK12372 4 SQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIA 82 (413)
T ss_pred HHHHHHhCCCcCCHHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHHH
Confidence 35788899999765555 9999999854 489999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||.+||+...-. .| ... ..
T Consensus 83 ~~LgL~~~Lrlg~ge--~~------------------------------------------------------sgg--~~ 104 (413)
T PRK12372 83 QALNISEGLRLGEGE--LR------------------------------------------------------SGG--FR 104 (413)
T ss_pred HHcCchHhhhcCcch--hh------------------------------------------------------cCC--CC
Confidence 999999998854200 00 000 12
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+|++||+|||||||+|+|+|++.+..|+..+
T Consensus 105 ~~kILADvfEALIGAIYLDsG~e~a~~fV~~l 136 (413)
T PRK12372 105 RPSILADAFEAIIGAVFLDGGFEAAQGVIKRL 136 (413)
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999999999999999998655
No 109
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.89 E-value=1.7e-22 Score=228.05 Aligned_cols=155 Identities=27% Similarity=0.338 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHhhcCCceeEEecc-C----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhccC
Q 000174 1765 MHPVRELQERCQQQAEGLEYKASRS-G----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKG 1839 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~~~y~~~~~-g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~ 1839 (1931)
+.||+.|||++.+++..+.|++.++ | +.|+++|.|+ .+.++|.|.|||.||++||+.+|..|+....+....++
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 8999999999999999999998874 4 3799999986 66699999999999999999999999988766654433
Q ss_pred CcCCc--------c-----cCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECC
Q 000174 1840 DENGK--------K-----RKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGE 1906 (1931)
Q Consensus 1840 ~~~~~--------~-----~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~ 1906 (1931)
..... . ...+...|||+.|+||||+++|+.|.|+++.+.|++|.++|++.|+|. ..+.+|+|
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~----~~~~~GkG- 191 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVE----NFTEEGKG- 191 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEec----ceeeecCC-
Confidence 21110 0 112346899999999999999999999999999999999999999995 33678999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 000174 1907 PMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1907 ~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+|||.||++||..||+.|.
T Consensus 192 --~sKKiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 192 --PSKKIAKRNAAEAMLESLG 210 (339)
T ss_pred --chHHHHHHHHHHHHHHHhc
Confidence 9999999999999999986
No 110
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.89 E-value=5.8e-22 Score=225.59 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=102.7
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
-..++||+|.||..++.++-.|.. .|+....+|. ++...+|.++-+++.++++.|++||...+.|+|-|+|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~----~Gi~A~AYHA-----GLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEI----AGIPAMAYHA-----GLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhh----cCcchHHHhc-----ccccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 357899999999999999999987 7999999999 9999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecCChhHHHHH
Q 000174 800 NVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERGNLSHATFL 843 (1931)
Q Consensus 800 ~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~~~~~~~~l 843 (1931)
..||++|+|.|+..|.|-.|||||.|.. +.+...+.+...-.|+
T Consensus 325 RFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 325 RFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred eEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999976 5555565554433333
No 111
>PRK09694 helicase Cas3; Provisional
Probab=99.88 E-value=6.5e-21 Score=251.81 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=83.5
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHH----HHHHHHh-hcCC---ceEEEEecccc
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQM----QETIAKF-RDGR---VTLLVATSVAE 791 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R----~~~l~~F-r~G~---~~vLVaTdVae 791 (1931)
.+.++||||+++..|..+++.|++... ....+..+|| .++..+| +++++.| ++|+ ..|||||+|+|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~~~~v~llHs-----rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN-TQVDIDLFHA-----RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC-CCceEEEEeC-----CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchh
Confidence 467899999999999999999986311 2367999999 8888777 5688999 6676 47999999999
Q ss_pred cCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 792 EGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 792 eGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+|||| ++++||....| ...++||+||++|.+.
T Consensus 633 ~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 633 QSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred heeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999 68999998887 6799999999999875
No 112
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.87 E-value=5.5e-22 Score=236.57 Aligned_cols=481 Identities=15% Similarity=0.176 Sum_probs=258.0
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
.-++.+||...+.|+.. -|.|+++++|+|||++.+..+.++.+.. +-.++.|||+|...| ..|+++|.+++
T Consensus 565 ~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~---nIwGPFLVVtpaStL-~NWaqEisrFl 640 (1185)
T KOG0388|consen 565 KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETH---NIWGPFLVVTPASTL-HNWAQEISRFL 640 (1185)
T ss_pred hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhc---cCCCceEEeehHHHH-hHHHHHHHHhC
Confidence 34678999999999865 5789999999999999999998888753 445679999998877 56999999987
Q ss_pred -CCcEEEEeCCCccc-----ccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHH
Q 000174 376 -GYVVGHYCGEMGQD-----FWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMS 449 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~-----~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~ 449 (1931)
.+++.-+.|+.... .|......+.....+|+|+|||.+. ....++.--.|.+.|+|||+-+...+ ....+
T Consensus 641 P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvV--tDeky~qkvKWQYMILDEAQAIKSSs--S~RWK 716 (1185)
T KOG0388|consen 641 PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVV--TDEKYLQKVKWQYMILDEAQAIKSSS--SSRWK 716 (1185)
T ss_pred ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeee--chHHHHHhhhhhheehhHHHHhhhhh--hhHHH
Confidence 68999999986532 2333322334468899999999887 34455666789999999999987632 22223
Q ss_pred HHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe-cchHHHhhhCCCCceeEEEeccchhhhH
Q 000174 450 EFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI-KDRKELEKHVPMPSEVVVEYDKAASLWS 528 (1931)
Q Consensus 450 ~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~-~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 528 (1931)
.++.. ....+|+||+||++ +.++.|+++|+=..-+. ....++..+..+-.|........-
T Consensus 717 tLLsF----~cRNRLLLTGTPIQ-----------NsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tl---- 777 (1185)
T KOG0388|consen 717 TLLSF----KCRNRLLLTGTPIQ-----------NSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTL---- 777 (1185)
T ss_pred HHhhh----hccceeeecCCccc-----------hHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCc----
Confidence 33322 22558999999996 24455555544111111 112233333222222111111000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH--HHHHHHHhHHHHHH
Q 000174 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI--NYALGELGQWCAYK 606 (1931)
Q Consensus 529 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~--~~~l~~lg~~~a~~ 606 (1931)
-..+++++...+.++.........-.-++. +.+. .+++.+..+.....+.+...+..+ ...+..+...|.+.
T Consensus 778 neqqL~RLH~ILKPFMLRRvKkdV~sELg~-----Ktei-dv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHP 851 (1185)
T KOG0388|consen 778 NEQQLQRLHAILKPFMLRRVKKDVISELGQ-----KTEI-DVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHP 851 (1185)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-----ceEE-EEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCh
Confidence 001222222222222211111000000000 0000 000000000000001111111100 00222333333321
Q ss_pred HHHHHHHHhhh-----------------hhhh--hhhhhHHH----HH-------HHHHHHHHHhhhhhhhccccccccc
Q 000174 607 VAQSFLTALQN-----------------DERA--NYQLDVKF----QE-------SYLSKVVSLLQCELVEGAVSKKDAK 656 (1931)
Q Consensus 607 ~~~~~l~~l~~-----------------~~~~--~~~~~~~~----~~-------~yl~~i~~~l~~~~~~~~~~~~~~~ 656 (1931)
-+ +..++. ..+. .+.+.... .+ .|..+++.......-++...-....
T Consensus 852 dL---Fer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l 928 (1185)
T KOG0388|consen 852 DL---FERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRL 928 (1185)
T ss_pred HH---HhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccc
Confidence 11 111110 0000 00111000 00 0111111111000000100000000
Q ss_pred cccccccc--------------------ccCCccc-----------c---ccccccc----cccccCCCchh--------
Q 000174 657 VVDSENGF--------------------VEGGTNE-----------I---EEGELLD----SHVVSGGEHVD-------- 690 (1931)
Q Consensus 657 i~~~~~~~--------------------~~~~~~~-----------l---~~~~l~~----~~~~s~~e~~~-------- 690 (1931)
+.+...+. .....+. | ...+.+. +..++...++.
T Consensus 929 ~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~ 1008 (1185)
T KOG0388|consen 929 SLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRH 1008 (1185)
T ss_pred eeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccC
Confidence 00000000 0000000 0 0000000 00111110100
Q ss_pred hhhhhccc------CCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 691 VIIGAAVA------DGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 691 ~~i~~~~~------~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
..+...+. --..|.|+..|-++|.+. ...++|+++|.+-..+.+.+.++|.. .++....+.| ..
T Consensus 1009 ~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kL-kaegHRvL~yfQMTkM~dl~EdYl~y----r~Y~ylRLDG-----Ss 1078 (1185)
T KOG0388|consen 1009 IPLNTTIYVPPMNTFITDSGKLVVLDELLPKL-KAEGHRVLMYFQMTKMIDLIEDYLVY----RGYTYLRLDG-----SS 1078 (1185)
T ss_pred cccccceecCcHHhhhccccceeeHHHHHHHh-hcCCceEEehhHHHHHHHHHHHHHHh----hccceEEecC-----cc
Confidence 00111110 113478999999999887 56789999999999999999999987 7899999999 78
Q ss_pred cHHHHHHHHHHhhcCCc-eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 765 RTFQMQETIAKFRDGRV-TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~-~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
....|..++.+|...++ -+|++|.+++-|||+.+++.||.||..|||....|.+.||+|.|+.
T Consensus 1079 k~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQT 1142 (1185)
T KOG0388|consen 1079 KASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQT 1142 (1185)
T ss_pred hhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCc
Confidence 88899999999996554 4899999999999999999999999999999999999999999988
No 113
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.86 E-value=1e-20 Score=248.48 Aligned_cols=315 Identities=17% Similarity=0.236 Sum_probs=224.2
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.....|....|+-|.++|..++. ++++|.++||.||.++|.+|+.-. .+..|||.|.++|+..|...+ .
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---------~gitvVISPL~SLm~DQv~~L-~ 325 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---------GGVTVVISPLISLMQDQVTHL-S 325 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---------CCceEEeccHHHHHHHHHHhh-h
Confidence 34557889999999999999888 999999999999999999986421 347999999999999988888 3
Q ss_pred HcCCcEEEEeCCCcccccchHHHHhhcC---CccEEEEcHHHHHHH--Hhcccccccc---eeEEEEeCCCcccC-CCcH
Q 000174 374 QTGYVVGHYCGEMGQDFWDAQRWQREFD---TKQVLVMTAQILLNI--LRHSIIKMEA---INLLILDECHHAVK-KHPY 444 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~~~~~~~~~w~~~~~---~~~IlV~Tpq~L~d~--L~~~~l~l~~---i~lLV~DEaH~~~~-~~~~ 444 (1931)
..+++...++++..... ....|+.+.. ..+|+..||+.+... +.+....+.. +.++|+||||.... .|.|
T Consensus 326 ~~~I~a~~L~s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 326 KKGIPACFLSSIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred hcCcceeeccccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 46888888888876432 2345555443 578999999998742 2222223444 89999999999985 3667
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEE--ecc
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVE--YDK 522 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~--y~~ 522 (1931)
+...+.+-..........+|+||||-.. .+. +++...+..+...+.. ++.
T Consensus 405 Rp~Yk~l~~l~~~~~~vP~iALTATAT~--------~v~--------------------~DIi~~L~l~~~~~~~~sfnR 456 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFPGVPFIALTATATE--------RVR--------------------EDVIRSLGLRNPELFKSSFNR 456 (941)
T ss_pred cHHHHHHHHHHhhCCCCCeEEeehhccH--------HHH--------------------HHHHHHhCCCCcceecccCCC
Confidence 6665555443322223458999999531 111 1111111111111000 000
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
.+. .|.+...
T Consensus 457 ~NL--------------------------------------------~yeV~~k-------------------------- 466 (941)
T KOG0351|consen 457 PNL--------------------------------------------KYEVSPK-------------------------- 466 (941)
T ss_pred CCc--------------------------------------------eEEEEec--------------------------
Confidence 000 0000000
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
T Consensus 467 -------------------------------------------------------------------------------- 466 (941)
T KOG0351|consen 467 -------------------------------------------------------------------------------- 466 (941)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCc
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQ 762 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~ 762 (1931)
........+...++. ..++..+||+|.++.+++.+...|.. .++++..+|+
T Consensus 467 ------------------~~~~~~~~~~~~~~~--~~~~~s~IIYC~sr~~ce~vs~~L~~----~~~~a~~YHA----- 517 (941)
T KOG0351|consen 467 ------------------TDKDALLDILEESKL--RHPDQSGIIYCLSRKECEQVSAVLRS----LGKSAAFYHA----- 517 (941)
T ss_pred ------------------cCccchHHHHHHhhh--cCCCCCeEEEeCCcchHHHHHHHHHH----hchhhHhhhc-----
Confidence 000000011111112 24567899999999999999999998 5789999999
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+|+..+|+.+..+|-.++++|+|||=+.+.|||.|+|..||||.+|.+.+.|.|-.|||||.|..
T Consensus 518 Gl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~ 582 (941)
T KOG0351|consen 518 GLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLP 582 (941)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999976
No 114
>smart00535 RIBOc Ribonuclease III family.
Probab=99.86 E-value=3.8e-22 Score=210.03 Aligned_cols=126 Identities=40% Similarity=0.632 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccC
Q 000174 1607 GLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1686 (1931)
Q Consensus 1607 ~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~ 1686 (1931)
.||.+|||||||.... ++|||||||||+||+++++.|+|.+||+.++|.|+.+++.+|+|+.|+.+|.++||+++++.+
T Consensus 1 ~ll~~alth~s~~~~~-~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~ 79 (129)
T smart00535 1 SLLLRALTHASYSNEH-EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLG 79 (129)
T ss_pred CHHHHHhhcccccccC-cchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccC
Confidence 3799999999996544 799999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCC
Q 000174 1687 SSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMV 1758 (1931)
Q Consensus 1687 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i 1758 (1931)
...... .....+|+++|+|||+|||||+|+|.+ .+++|+..++.|.+
T Consensus 80 ~~~~~~-----------------------~~~~~~k~~a~~~eAliGAi~ld~g~~--~~~~~i~~~~~~~~ 126 (129)
T smart00535 80 RGEAIS-----------------------GGRDKPSILADVFEALIGAIYLDSGLE--AAREFIRDLLGPRL 126 (129)
T ss_pred chHhhc-----------------------CCcccchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHh
Confidence 654310 113579999999999999999999854 66677777666543
No 115
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.86 E-value=3e-19 Score=206.51 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=107.1
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 699 DGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 699 ~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
....|.|+++|.+.|.-. .....-|.|||.+...+.+.+.-.|.+ .|+.++-+.| +|+...|..+++.|+
T Consensus 615 ~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k----aGfscVkL~G-----sMs~~ardatik~F~ 685 (791)
T KOG1002|consen 615 DWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK----AGFSCVKLVG-----SMSPAARDATIKYFK 685 (791)
T ss_pred hhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc----cCceEEEecc-----CCChHHHHHHHHHhc
Confidence 446688999999988665 344567899999999999999999988 7999999999 999999999999999
Q ss_pred cC-Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 778 DG-RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 778 ~G-~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+. .+. +||+-.+++--+|+..+..|...|+-||+.--.|...|++|+||.
T Consensus 686 nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 686 NDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred cCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 54 555 677889999999999999999999999999999999999999998
No 116
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.85 E-value=4.4e-20 Score=214.29 Aligned_cols=385 Identities=16% Similarity=0.149 Sum_probs=229.4
Q ss_pred cCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 298 KMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..-+..+.|+|++.+..+++ +.++++++||+|||++|+..+..+.. ....|||||.. |-.-|++++++|+
T Consensus 193 ~kLvs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-------EwplliVcPAs-vrftWa~al~r~l 264 (689)
T KOG1000|consen 193 PKLVSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-------EWPLLIVCPAS-VRFTWAKALNRFL 264 (689)
T ss_pred HHHHHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-------cCcEEEEecHH-HhHHHHHHHHHhc
Confidence 34567799999999999998 77999999999999999998776544 24599999974 5677999999998
Q ss_pred C--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 G--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 ~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
+ .++.++.++.... ........|.|.+++.|..+ +..+.-..+.+||+||+|++.+.. .+..+....
T Consensus 265 ps~~pi~vv~~~~D~~-------~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sk--tkr~Ka~~d 333 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPL-------PDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSK--TKRTKAATD 333 (689)
T ss_pred ccccceEEEecccCCc-------cccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccc--hhhhhhhhh
Confidence 5 3444555443211 11123467999999988733 334556679999999999998632 111222222
Q ss_pred hcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC-ceeEEEeccchhhhHHHHH
Q 000174 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP-SEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p-~e~~~~y~~~~~~~~l~~~ 532 (1931)
... ...++|+||+||.-.. +..+..+|..+...+... ..+.-.++..-. ......|........|.-.
T Consensus 334 llk--~akhvILLSGTPavSR----P~elytqi~avd~tlfp~-----f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~l 402 (689)
T KOG1000|consen 334 LLK--VAKHVILLSGTPAVSR----PSELYTQIRAVDHTLFPN-----FHEFAIRYCDGKQVRFCFDYKGCTNLEELAAL 402 (689)
T ss_pred HHH--HhhheEEecCCcccCC----chhhhhhhhhhccccccc-----HHHHHHHhcCccccceeeecCCCCCHHHHHHH
Confidence 211 1267999999998533 333333444443333221 111222222211 1123334333333333333
Q ss_pred HHH-HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH-HHHHHH
Q 000174 533 LKQ-MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA-YKVAQS 610 (1931)
Q Consensus 533 i~~-l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a-~~~~~~ 610 (1931)
+.+ ++.+- .+.+...+|+.+-+.+.+.+. |...+ ...
T Consensus 403 L~k~lMIRR------------------------------------lK~dvL~qLPpKrr~Vv~~~~--gr~da~~~~--- 441 (689)
T KOG1000|consen 403 LFKRLMIRR------------------------------------LKADVLKQLPPKRREVVYVSG--GRIDARMDD--- 441 (689)
T ss_pred HHHHHHHHH------------------------------------HHHHHHhhCCccceEEEEEcC--CccchHHHH---
Confidence 222 11111 011111111111000000000 00000 000
Q ss_pred HHHHhhhhhhhhhhhhHHHHHH--HHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 611 FLTALQNDERANYQLDVKFQES--YLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 611 ~l~~l~~~~~~~~~~~~~~~~~--yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
.... ...+......++. -+...++
T Consensus 442 lv~~-----a~~~t~~~~~e~~~~~l~l~y~------------------------------------------------- 467 (689)
T KOG1000|consen 442 LVKA-----AADYTKVNSMERKHESLLLFYS------------------------------------------------- 467 (689)
T ss_pred HHHH-----hhhcchhhhhhhhhHHHHHHHH-------------------------------------------------
Confidence 0000 0000000000000 0000000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHH---hcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLK---YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~---~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
...-.|+....+.|.. +...+..|.+||+......+-+...+.+ .++....|.| ..+
T Consensus 468 -----------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~----r~vg~IRIDG-----st~ 527 (689)
T KOG1000|consen 468 -----------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK----RKVGSIRIDG-----STP 527 (689)
T ss_pred -----------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH----cCCCeEEecC-----CCC
Confidence 0112355555555554 2356778999999999999999999998 7899999999 888
Q ss_pred HHHHHHHHHHhh-cCCce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 766 TFQMQETIAKFR-DGRVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 766 ~~~R~~~l~~Fr-~G~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..+|+...++|. +.++. -+++--+++.||++.++++||...++|||--.+|.-.||+|.||+
T Consensus 528 s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk 591 (689)
T KOG1000|consen 528 SHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK 591 (689)
T ss_pred chhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhcccc
Confidence 999999999999 45555 345667899999999999999999999999999999999999998
No 117
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.85 E-value=3.4e-20 Score=249.75 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=84.6
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
....+|||+++...+..+++.|.... ...+.+..+|| ++++.+|+++++.+ +..+|||||+|+|+|||||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~-~~~~~VlpLhg-----~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV 349 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRN-LRHTEILPLYA-----RLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGI 349 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcC-CCCcEEEeccC-----CCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCe
Confidence 34689999999999999999998642 13567889999 99999999986554 236899999999999999999
Q ss_pred CEEEEcCCCC------------------CHHHHHHhhccCCCCCCc
Q 000174 800 NVVIRFDLAK------------------TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 800 ~lVI~fD~p~------------------s~~~yiQr~GRa~R~Gs~ 827 (1931)
.+||+++++. |..+|+||.|||||.|..
T Consensus 350 ~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G 395 (1283)
T TIGR01967 350 HYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPG 395 (1283)
T ss_pred eEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCc
Confidence 9999998543 567999999999998755
No 118
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.85 E-value=5.7e-22 Score=210.08 Aligned_cols=127 Identities=40% Similarity=0.610 Sum_probs=111.5
Q ss_pred HHHHHhcCCCCCCCC-CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccC
Q 000174 1608 LLVEAITHASRPSSG-VSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1686 (1931)
Q Consensus 1608 LL~~AlTH~S~~~~~-~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~ 1686 (1931)
||.+||||+|+.... ..+|||||||||+||+++++.|+|..+|+.++|.|+.+++.+|||++|+.+|.++||+++++..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 799999999997552 4799999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCCC
Q 000174 1687 SSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVT 1759 (1931)
Q Consensus 1687 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i~ 1759 (1931)
+..... .....+|+++|+|||+|||||+|+|. +.+++|+..++.|.+.
T Consensus 82 ~~~~~~-----------------------~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~ 129 (133)
T cd00593 82 KGEEKS-----------------------GGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIE 129 (133)
T ss_pred chHhhc-----------------------CCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHh
Confidence 765321 12467999999999999999999997 4677888777666544
No 119
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.8e-18 Score=193.97 Aligned_cols=296 Identities=24% Similarity=0.309 Sum_probs=198.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
-+++++|+.+-..++. .++||.+-||+|||.+..-.|...+. .+.++.+..|.+..|...+..++.-+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~------~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN------QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh------cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 4799999998777654 78999999999999877777666655 36789999999999999999999866
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
+..+..++|+...- +. ..++|+|-..|+..-+ .+++||+||+|-. ||...-.-.+...
T Consensus 170 ~~~I~~Lyg~S~~~----------fr-~plvVaTtHQLlrFk~-------aFD~liIDEVDAF----P~~~d~~L~~Av~ 227 (441)
T COG4098 170 NCDIDLLYGDSDSY----------FR-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAF----PFSDDQSLQYAVK 227 (441)
T ss_pred cCCeeeEecCCchh----------cc-ccEEEEehHHHHHHHh-------hccEEEEeccccc----cccCCHHHHHHHH
Confidence 59999999986431 23 6788888887775543 4899999999987 4433322222211
Q ss_pred C-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHh-cCCeEEEecchH-HHhhhCCCCceeEEEeccchhhhHHHHH
Q 000174 456 S-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESK-LDSVVCTIKDRK-ELEKHVPMPSEVVVEYDKAASLWSLHEQ 532 (1931)
Q Consensus 456 ~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~-l~~~i~t~~~~~-~l~~~~~~p~e~~~~y~~~~~~~~l~~~ 532 (1931)
. ....--++.|||||.. .|+.. ....+....-.. .-.+-++.|.....
T Consensus 228 ~ark~~g~~IylTATp~k---------------~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~-------------- 278 (441)
T COG4098 228 KARKKEGATIYLTATPTK---------------KLERKILKGNLRILKLPARFHGKPLPVPKFVWI-------------- 278 (441)
T ss_pred HhhcccCceEEEecCChH---------------HHHHHhhhCCeeEeecchhhcCCCCCCCceEEe--------------
Confidence 1 1112447889999974 22211 111111110000 00011111111100
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000174 533 LKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFL 612 (1931)
Q Consensus 533 i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l 612 (1931)
|.|..
T Consensus 279 -------------------------------------------------------------------~~~~k-------- 283 (441)
T COG4098 279 -------------------------------------------------------------------GNWNK-------- 283 (441)
T ss_pred -------------------------------------------------------------------ccHHH--------
Confidence 01100
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhh
Q 000174 613 TALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVI 692 (1931)
Q Consensus 613 ~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~ 692 (1931)
T Consensus 284 -------------------------------------------------------------------------------- 283 (441)
T COG4098 284 -------------------------------------------------------------------------------- 283 (441)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHH
Q 000174 693 IGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQET 772 (1931)
Q Consensus 693 i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~ 772 (1931)
.+......+|+ +..|++. ...+.-++||+++..+.+.++..|+.. ++...++++|+ ....|.+.
T Consensus 284 ---~l~r~kl~~kl---~~~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~--~~~~~i~~Vhs-------~d~~R~Ek 347 (441)
T COG4098 284 ---KLQRNKLPLKL---KRWLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKK--LPKETIASVHS-------EDQHRKEK 347 (441)
T ss_pred ---HhhhccCCHHH---HHHHHHH-HhcCCcEEEEecchHHHHHHHHHHHhh--CCccceeeeec-------cCccHHHH
Confidence 00011223333 3344443 345678999999999999999999542 35567788887 23568899
Q ss_pred HHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCC--CCHHHHHHhhccCCCCC
Q 000174 773 IAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA--KTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 773 l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p--~s~~~yiQr~GRa~R~G 825 (1931)
++.||+|++.|||+|.++|||+.+|+++++|.=--. .+-.+.||-.||+||.-
T Consensus 348 V~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 348 VEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred HHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 999999999999999999999999999987654333 68899999999999964
No 120
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=9.9e-19 Score=230.78 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
.-+|.+|..++..+.+ ++.+++++||||||++++..+..++.. ....++|||||+.+|+.||.+.
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh----cCCCeEEEEECcHHHHHHHHHH
Confidence 3489999999998754 368999999999999999988877642 3457899999999999999999
Q ss_pred HHHHcCCcEEEEeCCCcccccchHHHHhhcC--CccEEEEcHHHHHHHHhcc--cccccce-eEEEEeCCCcccCCCcHH
Q 000174 371 IREQTGYVVGHYCGEMGQDFWDAQRWQREFD--TKQVLVMTAQILLNILRHS--IIKMEAI-NLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 371 l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~--~~~IlV~Tpq~L~d~L~~~--~l~l~~i-~lLV~DEaH~~~~~~~~~ 445 (1931)
|+.+....+ .+..+ ...+...+. ...|+|+|.|.|.+.+... .+....- .+||+|||||.... .|.
T Consensus 313 f~~~~~~~~---~~~~s-----~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~~ 383 (667)
T TIGR00348 313 FQSLQKDCA---ERIES-----IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-ELA 383 (667)
T ss_pred HHhhCCCCC---cccCC-----HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HHH
Confidence 998653111 11111 122222222 4689999999998654321 1122222 28999999998763 566
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCC
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNL 473 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~ 473 (1931)
..|+..+. ...+|||||||...
T Consensus 384 ~~l~~~~p------~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 384 KNLKKALK------NASFFGFTGTPIFK 405 (667)
T ss_pred HHHHhhCC------CCcEEEEeCCCccc
Confidence 66655442 25799999999864
No 121
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=5.4e-19 Score=213.16 Aligned_cols=459 Identities=19% Similarity=0.154 Sum_probs=254.2
Q ss_pred CCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhh---c-CCCcEEEEEeCChhHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQR---Q-NKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~---~-~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
..+.|+|+.++.|+.- ...|+++++|.|||++.+.+|.+--..... . ......|||||. .|..||..++
T Consensus 324 v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 324 VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHH
Confidence 5688999999999864 568999999999999877766543221111 1 111259999996 6899999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHH----HHhcc----cccccceeEEEEeCCCcccC
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLN----ILRHS----IIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d----~L~~~----~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+.+ -++|.++||... ++.-.+.+..++|||+||....+ -+..+ .+.--.|.-||+||||.+++
T Consensus 403 ~~rl~~n~LsV~~~HG~n~-----r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNK-----REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHHhhcceEEEEecCCcc-----ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 9876 588999999753 22223456899999999998876 22221 12234578999999999998
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEE---------------ecchH-
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCT---------------IKDRK- 504 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t---------------~~~~~- 504 (1931)
...-....-.-+. ...+..+||||++.+. .|+. .|-.++...-+. ..++.
T Consensus 478 ~~tq~S~AVC~L~------a~~RWclTGTPiqNn~----~Dvy----sLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rln 543 (901)
T KOG4439|consen 478 SNTQCSKAVCKLS------AKSRWCLTGTPIQNNL----WDVY----SLLRFLRCPPFGDLKQWKENIDNMSKGGANRLN 543 (901)
T ss_pred cchhHHHHHHHHh------hcceeecccCccccch----hHHH----HHHHHhcCCCcchHHHHHHhccCccccchhhhh
Confidence 5433322111111 1347999999997443 3333 332222221111 00100
Q ss_pred ------HHh----------hhCCCCceeEE--Eeccch----hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc--cc
Q 000174 505 ------ELE----------KHVPMPSEVVV--EYDKAA----SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGA--RD 560 (1931)
Q Consensus 505 ------~l~----------~~~~~p~e~~~--~y~~~~----~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~--r~ 560 (1931)
.+. +.+..|...+. ...... ...-+.+.-+.+... ++.....+.....+.. +.
T Consensus 544 ll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq---~L~~~e~~~~~~~~~s~~~~ 620 (901)
T KOG4439|consen 544 LLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQ---FLLQREDRNNDGGYQSRNRF 620 (901)
T ss_pred hhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHH---HHHhhhhhccccCccccchh
Confidence 011 12233432222 111111 111111111222211 1211111111100000 00
Q ss_pred chhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000174 561 AGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSL 640 (1931)
Q Consensus 561 ~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~ 640 (1931)
.+...+...-|.+..|....+. -......+...+..|.+.|.+-.+. ...++..+......+...++..-......
T Consensus 621 ~~~~~e~~~~~~~~pR~~aags--n~~~~s~IL~LLlrLRQ~ccH~~~~--k~~ld~~~~~~~g~~~sde~~~e~~~l~e 696 (901)
T KOG4439|consen 621 IGGHDEFGNYYNIGPRFLAAGS--NFEIMSHILVLLLRLRQACCHFGLL--KAALDPEEFQMNGGDDSDEEQLEEDNLAE 696 (901)
T ss_pred ccccccccccccccchhhhcCC--chhhHHHHHHHHHHHHHHhcCcchh--ccccCHHHhhhcCcchhhhhhhhhhHHHh
Confidence 1111111112222222211111 1122223555566777777753111 11111111111111111111000000000
Q ss_pred hhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCC
Q 000174 641 LQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTE 720 (1931)
Q Consensus 641 l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~ 720 (1931)
+... ....+.+.-.+ .++. + -.+ +.......|.|+..++++|.......
T Consensus 697 l~k~----------------~~T~~~~D~~e----d~p~--~-----~~~----q~Fe~~r~S~Ki~~~l~~le~i~~~s 745 (901)
T KOG4439|consen 697 LEKN----------------DETDCSDDNCE----DLPT--A-----FPD----QAFEPDRPSCKIAMVLEILETILTSS 745 (901)
T ss_pred hhhc----------------ccccccccccc----cccc--c-----chh----hhcccccchhHHHHHHHHHHHHhhcc
Confidence 0000 00000000000 0000 0 000 11223356889999999998875667
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh--cCCce-EEEEecccccCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR--DGRVT-LLVATSVAEEGLDIR 797 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr--~G~~~-vLVaTdVaeeGlDip 797 (1931)
..++||-.+.......+...|+. .++....++| ....++|+++++.|. +|..+ .|++-.+++-|||+-
T Consensus 746 keK~viVSQwtsvLniv~~hi~~----~g~~y~si~G-----qv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~ 816 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQK----GGHIYTSITG-----QVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLI 816 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhh----CCeeeeeecC-----ccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeec
Confidence 78899988888888888888888 6788999999 899999999999998 55455 556778999999999
Q ss_pred CCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 798 QCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 798 ~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
..||+|..|+.|||.---|...|+.|.|++
T Consensus 817 GaNHlilvDlHWNPaLEqQAcDRIYR~GQk 846 (901)
T KOG4439|consen 817 GANHLILVDLHWNPALEQQACDRIYRMGQK 846 (901)
T ss_pred ccceEEEEecccCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.82 E-value=5.3e-19 Score=220.22 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=117.3
Q ss_pred CCCCCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.....+|.||..||.++.+ +.++++|.||+|||.+|+.+|..+++ .+..++||||+-+++|+.|-...+.
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r----~~~~KRVLFLaDR~~Lv~QA~~af~ 236 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK----SGWVKRVLFLADRNALVDQAYGAFE 236 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh----cchhheeeEEechHHHHHHHHHHHH
Confidence 3457899999999999764 45999999999999999998877766 4567899999999999999999999
Q ss_pred HHcCC--cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-----cccccceeEEEEeCCCcccCCCcHH
Q 000174 373 EQTGY--VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-----IIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 373 ~~~~l--~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-----~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
.+.+. .+..+.+.... ..++|.|+|+|++...+.+. .+....++|||+|||||-.-+ -|+
T Consensus 237 ~~~P~~~~~n~i~~~~~~------------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~~ 303 (875)
T COG4096 237 DFLPFGTKMNKIEDKKGD------------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EWS 303 (875)
T ss_pred HhCCCccceeeeecccCC------------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hhH
Confidence 98743 33333332211 25799999999999988664 245667999999999998763 677
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.|+..|-.. ++||||||..
T Consensus 304 ~I~dYFdA~--------~~gLTATP~~ 322 (875)
T COG4096 304 SILDYFDAA--------TQGLTATPKE 322 (875)
T ss_pred HHHHHHHHH--------HHhhccCccc
Confidence 777766543 5677999985
No 123
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.82 E-value=1.5e-20 Score=218.13 Aligned_cols=136 Identities=32% Similarity=0.448 Sum_probs=115.5
Q ss_pred HHHhhhcCCCCCh-hHHHHHhccccCC----CCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHH
Q 000174 1372 IQLKDKINYPVPA-SKILEALTAASCQ----ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVL 1446 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~-~~ll~AlT~~s~~----~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L 1446 (1931)
..|+..|||.|.+ .++++||||+|+. ...||||||||||++|+++++.|||.+||+.++|.|+.+|+.+|||.+|
T Consensus 6 ~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~~l 85 (229)
T PRK00102 6 EELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESL 85 (229)
T ss_pred HHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHH
Confidence 4678899999988 5555999999985 3579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCC
Q 000174 1447 YQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSS 1526 (1931)
Q Consensus 1447 ~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1526 (1931)
+.+|.++||+.||+..+-.. ..
T Consensus 86 a~~a~~lgl~~~i~~~~~~~------------------------------------------------~~---------- 107 (229)
T PRK00102 86 AEIARELGLGEYLLLGKGEE------------------------------------------------KS---------- 107 (229)
T ss_pred HHHHHHCCcHHHHccCcHHH------------------------------------------------Hc----------
Confidence 99999999999997643000 00
Q ss_pred ccccccchhhhHHHHHhhheeeccCHHHHHHHHhHhhcc
Q 000174 1527 YRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQ 1565 (1931)
Q Consensus 1527 ~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~i~ 1565 (1931)
.....+|.+||+|||+|||+|+|+|.+.|.+|+..+-.+
T Consensus 108 ~~~~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~~~~ 146 (229)
T PRK00102 108 GGRRRPSILADAFEALIGAIYLDQGLEAARKFILRLFEP 146 (229)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 001246899999999999999999999999998766433
No 124
>smart00535 RIBOc Ribonuclease III family.
Probab=99.82 E-value=1.6e-20 Score=197.60 Aligned_cols=117 Identities=41% Similarity=0.569 Sum_probs=103.8
Q ss_pred HHHHHhccccCCCCC-CCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceecccc
Q 000174 1386 KILEALTAASCQETF-CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRF 1464 (1931)
Q Consensus 1386 ~ll~AlT~~s~~~~~-nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f 1464 (1931)
++++||||+|+.... ||||||||||+||+++++.|+|.+||+.++|.|+.+|+.+|||++|+++|.++||++||+..++
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 577999999998776 9999999999999999999999999999999999999999999999999999999999987542
Q ss_pred CC-CCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHh
Q 000174 1465 AP-SRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALI 1543 (1931)
Q Consensus 1465 ~~-~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALi 1543 (1931)
.. +.| ..++|.+||+|||+|
T Consensus 82 ~~~~~~-----------------------------------------------------------~~~~k~~a~~~eAli 102 (129)
T smart00535 82 EAISGG-----------------------------------------------------------RDKPSILADVFEALI 102 (129)
T ss_pred HhhcCC-----------------------------------------------------------cccchHHHHHHHHHH
Confidence 11 000 135799999999999
Q ss_pred hheeeccCHHHHHHHHhH
Q 000174 1544 GVYYVEGGKDAANHLMKW 1561 (1931)
Q Consensus 1544 GA~~l~~G~~~a~~~~~~ 1561 (1931)
||+|+++|.+.|.+|+..
T Consensus 103 GAi~ld~g~~~~~~~i~~ 120 (129)
T smart00535 103 GAIYLDSGLEAAREFIRD 120 (129)
T ss_pred HHHHHhCCHHHHHHHHHH
Confidence 999999999999998843
No 125
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.82 E-value=8.8e-21 Score=194.84 Aligned_cols=114 Identities=42% Similarity=0.612 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhc
Q 000174 1627 QRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELL 1706 (1931)
Q Consensus 1627 eRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~ 1706 (1931)
|||||||||||+++|+.|||.+||+.+||.||.+|+++|||++|+.+|+++||++|++..+......+..+.+.+.....
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999999999999999999999999999997666554443332111111110
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHhHhhcccc
Q 000174 1707 KPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740 (1931)
Q Consensus 1707 ~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg 1740 (1931)
..............+|++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0000000012345689999999999999999998
No 126
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.82 E-value=6.1e-21 Score=198.78 Aligned_cols=120 Identities=41% Similarity=0.509 Sum_probs=95.7
Q ss_pred hhHHHHHhccccCC--CCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceec
Q 000174 1384 ASKILEALTAASCQ--ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQA 1461 (1931)
Q Consensus 1384 ~~~ll~AlT~~s~~--~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~ 1461 (1931)
..++++||||+|+. ...||||||||||++|+++++.|+|.++|. +||.++.+|+.+|+|.+|+++|.++||+++|+.
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~ 80 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRW 80 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHh
Confidence 35667999999985 257999999999999999999999999555 899999999999999999999999999999986
Q ss_pred cccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHH
Q 000174 1462 DRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEA 1541 (1931)
Q Consensus 1462 ~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEA 1541 (1931)
.+-.. .......+|.+||+|||
T Consensus 81 ~~~~~----------------------------------------------------------~~~~~~~~~vlad~feA 102 (128)
T PF14622_consen 81 GPGEE----------------------------------------------------------KSGGSGSDKVLADVFEA 102 (128)
T ss_dssp -HHHH----------------------------------------------------------HTTGGG-HHHHHHHHHH
T ss_pred CccHh----------------------------------------------------------hcCCCCCccHHHhHHHH
Confidence 32000 00012247899999999
Q ss_pred HhhheeeccCHHHHHHHHhHh
Q 000174 1542 LIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1542 LiGA~~l~~G~~~a~~~~~~l 1562 (1931)
||||+|+|+|.+.|..|+...
T Consensus 103 liGAiyld~G~~~a~~~i~~~ 123 (128)
T PF14622_consen 103 LIGAIYLDSGFEAARKFIQKL 123 (128)
T ss_dssp HHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 999999999999999998654
No 127
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.82 E-value=2e-20 Score=198.30 Aligned_cols=120 Identities=43% Similarity=0.602 Sum_probs=107.0
Q ss_pred HHHHHhccccCCCC---CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceecc
Q 000174 1386 KILEALTAASCQET---FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQAD 1462 (1931)
Q Consensus 1386 ~ll~AlT~~s~~~~---~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~ 1462 (1931)
++++||||+|+... .||||||||||++|+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||+.||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 56799999999875 899999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHH
Q 000174 1463 RFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEAL 1542 (1931)
Q Consensus 1463 ~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEAL 1542 (1931)
+..... ....++|.+||+||||
T Consensus 82 ~~~~~~----------------------------------------------------------~~~~~~k~~ad~~eAl 103 (133)
T cd00593 82 KGEEKS----------------------------------------------------------GGRLRPKILADVFEAL 103 (133)
T ss_pred chHhhc----------------------------------------------------------CCcccccHHHHHHHHH
Confidence 522100 1134689999999999
Q ss_pred hhheeeccCHHHHHHHHhHhh
Q 000174 1543 IGVYYVEGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1543 iGA~~l~~G~~~a~~~~~~l~ 1563 (1931)
|||+|+++|.+.|.+||.++-
T Consensus 104 iGAiyld~g~~~~~~~i~~~~ 124 (133)
T cd00593 104 IGAIYLDGGFEAARKFLLRLL 124 (133)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999863
No 128
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=3.2e-19 Score=225.77 Aligned_cols=166 Identities=23% Similarity=0.318 Sum_probs=122.6
Q ss_pred CCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc-----CCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-----NKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~-----~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+...+..+|..+...++. .|+++|||||+|||-++++-|++-+....+. -...++++++|..+||..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 4567799999999999998 8999999999999999999887766543321 12347999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-c--ccccceeEEEEeCCCcccCCCc--
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-I--IKMEAINLLILDECHHAVKKHP-- 443 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~--l~l~~i~lLV~DEaH~~~~~~~-- 443 (1931)
.+++ |+.|...+|+.... ...+.+.+|+|+||+.. |.+.+. . -..+-++++|+||.|.+-++-+
T Consensus 385 SkRla~~GI~V~ElTgD~~l~-------~~qieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpv 456 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLG-------KEQIEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPV 456 (1674)
T ss_pred HhhccccCcEEEEecccccch-------hhhhhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhcccccchH
Confidence 8864 88999999986542 23457899999999987 344442 1 2234688999999999854322
Q ss_pred HHHHH-HHHHhhcCCCCCcEEEEEeecCCC
Q 000174 444 YSLVM-SEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im-~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
-..+. +.+.+.......++++|||||..|
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccCCc
Confidence 22232 233332233345999999999764
No 129
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=3.4e-18 Score=220.54 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...+++.+.+. +..+..+||||.++..++.|+.+|.. .+++...+|| .+.+.+++.+.+.|+.|.
T Consensus 426 ~~~k~~av~~~i~~~-~~~g~PVLVgt~Sie~sE~ls~~L~~----~gi~h~vLna-----k~~q~Ea~iia~Ag~~G~- 494 (896)
T PRK13104 426 QADKFQAIIEDVREC-GVRKQPVLVGTVSIEASEFLSQLLKK----ENIKHQVLNA-----KFHEKEAQIIAEAGRPGA- 494 (896)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH----cCCCeEeecC-----CCChHHHHHHHhCCCCCc-
Confidence 346888888887665 56778899999999999999999998 7899999999 899999999999999994
Q ss_pred eEEEEecccccCCCCCCC--------------------------------------CEEEEcCCCCCHHHHHHhhccCCC
Q 000174 782 TLLVATSVAEEGLDIRQC--------------------------------------NVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
|+|||++|+||+||.=- =+||--..+.|.+---|-+|||||
T Consensus 495 -VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGR 573 (896)
T PRK13104 495 -VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGR 573 (896)
T ss_pred -EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 99999999999999732 168888899999999999999999
Q ss_pred CCCc
Q 000174 824 PGSD 827 (1931)
Q Consensus 824 ~Gs~ 827 (1931)
.|..
T Consensus 574 QGDP 577 (896)
T PRK13104 574 QGDP 577 (896)
T ss_pred CCCC
Confidence 8865
No 130
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=193.20 Aligned_cols=300 Identities=17% Similarity=0.235 Sum_probs=205.0
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
...+.||.|.+++...+. .++++.+|||.||+++|.+|++- ..+.+||++|...|+..|.-.++. +|+.
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~---------adg~alvi~plislmedqil~lkq-lgi~ 160 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC---------ADGFALVICPLISLMEDQILQLKQ-LGID 160 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh---------cCCceEeechhHHHHHHHHHHHHH-hCcc
Confidence 446789999999999988 99999999999999999999752 246799999999999999888886 5666
Q ss_pred EEEEeCCCcccccchHHHHh-hc----CCccEEEEcHHHHHHH------HhcccccccceeEEEEeCCCcccC-CCcHHH
Q 000174 379 VGHYCGEMGQDFWDAQRWQR-EF----DTKQVLVMTAQILLNI------LRHSIIKMEAINLLILDECHHAVK-KHPYSL 446 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~-~~----~~~~IlV~Tpq~L~d~------L~~~~l~l~~i~lLV~DEaH~~~~-~~~~~~ 446 (1931)
..++....+... ..|-. .. .....+..||+.+... |+ ..+....+.+|-+||+|.+.. .|.|+.
T Consensus 161 as~lnansske~---~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkle-ka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 161 ASMLNANSSKEE---AKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLE-KALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred hhhccCcccHHH---HHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHH-HHhhcceeEEEeecceeehhhhCcccCc
Confidence 666555443221 11211 11 2567899999987642 22 235567789999999999984 255554
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhh
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASL 526 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 526 (1931)
..+.+--....-....++|||||..+ ...+....+.-++..+ |+ ..-..+|+........+..
T Consensus 237 dy~~l~ilkrqf~~~~iigltatatn-----~vl~d~k~il~ie~~~-----tf------~a~fnr~nl~yev~qkp~n- 299 (695)
T KOG0353|consen 237 DYKALGILKRQFKGAPIIGLTATATN-----HVLDDAKDILCIEAAF-----TF------RAGFNRPNLKYEVRQKPGN- 299 (695)
T ss_pred chHHHHHHHHhCCCCceeeeehhhhc-----chhhHHHHHHhHHhhh-----ee------ecccCCCCceeEeeeCCCC-
Confidence 43322111111223569999999653 2223333333333321 11 0111222221110000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 000174 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK 606 (1931)
Q Consensus 527 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~ 606 (1931)
T Consensus 300 -------------------------------------------------------------------------------- 299 (695)
T KOG0353|consen 300 -------------------------------------------------------------------------------- 299 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 607 VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 607 ~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
T Consensus 300 -------------------------------------------------------------------------------- 299 (695)
T KOG0353|consen 300 -------------------------------------------------------------------------------- 299 (695)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccH
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~ 766 (1931)
...-.+.+.++++. .-.+..+||+|-++..++.++..|+. .|+....+|. .|.+
T Consensus 300 ---------------~dd~~edi~k~i~~--~f~gqsgiiyc~sq~d~ekva~alkn----~gi~a~~yha-----~lep 353 (695)
T KOG0353|consen 300 ---------------EDDCIEDIAKLIKG--DFAGQSGIIYCFSQKDCEKVAKALKN----HGIHAGAYHA-----NLEP 353 (695)
T ss_pred ---------------hHHHHHHHHHHhcc--ccCCCcceEEEeccccHHHHHHHHHh----cCcccccccc-----ccCc
Confidence 00000111111211 12356789999999999999999998 6889999999 8988
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHH
Q 000174 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816 (1931)
Q Consensus 767 ~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQ 816 (1931)
.++..+-+.+-.|+++|+|||-+.+.|||-|+|..||+-.+|.+...|.|
T Consensus 354 ~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 354 EDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 89999999999999999999999999999999999999999999999999
No 131
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=3.6e-19 Score=206.45 Aligned_cols=322 Identities=20% Similarity=0.267 Sum_probs=216.9
Q ss_pred CCCCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+-..+||||...+..+.. +..||++|.|+|||++.+-.+.. -++++||||....-|.||...+..|
T Consensus 298 KPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t---------ikK~clvLcts~VSVeQWkqQfk~w 368 (776)
T KOG1123|consen 298 KPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT---------IKKSCLVLCTSAVSVEQWKQQFKQW 368 (776)
T ss_pred CcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee---------ecccEEEEecCccCHHHHHHHHHhh
Confidence 4567899999999999986 77899999999999998876543 2567999999999999999999998
Q ss_pred cCC---cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--------ccccccceeEEEEeCCCcccCCCc
Q 000174 375 TGY---VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--------SIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 375 ~~l---~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--------~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
..+ .++.++++... | ...++.|+|+|+.++..--.+ .++.-..|+++|+||+|-+-. +-
T Consensus 369 sti~d~~i~rFTsd~Ke-------~--~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~M 438 (776)
T KOG1123|consen 369 STIQDDQICRFTSDAKE-------R--FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KM 438 (776)
T ss_pred cccCccceEEeeccccc-------c--CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HH
Confidence 754 46666655321 1 125788999999988643222 134567899999999999977 46
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccc
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKA 523 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~ 523 (1931)
|+.++...-..+ .||||||.++.++ .|..|.-++.++++.... -++.+..+.. .+.
T Consensus 439 FRRVlsiv~aHc-------KLGLTATLvREDd---------KI~DLNFLIGPKlYEAnW-mdL~~kGhIA---~Vq---- 494 (776)
T KOG1123|consen 439 FRRVLSIVQAHC-------KLGLTATLVREDD---------KITDLNFLIGPKLYEANW-MDLQKKGHIA---KVQ---- 494 (776)
T ss_pred HHHHHHHHHHHh-------hccceeEEeeccc---------cccccceeecchhhhccH-HHHHhCCcee---EEe----
Confidence 888877666554 5999999987554 222333233333322211 1111000000 000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWC 603 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~ 603 (1931)
-.-.||
T Consensus 495 --------------------------------------------------------------------------CaEVWC 500 (776)
T KOG1123|consen 495 --------------------------------------------------------------------------CAEVWC 500 (776)
T ss_pred --------------------------------------------------------------------------eeeeec
Confidence 001233
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccc
Q 000174 604 AYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVV 683 (1931)
Q Consensus 604 a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~ 683 (1931)
.. ...|-..|++.-...- .+
T Consensus 501 pM--------------------t~eFy~eYL~~~t~kr----------------------------------~l------ 520 (776)
T KOG1123|consen 501 PM--------------------TPEFYREYLRENTRKR----------------------------------ML------ 520 (776)
T ss_pred CC--------------------CHHHHHHHHhhhhhhh----------------------------------he------
Confidence 31 1122233333211100 00
Q ss_pred cCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcc
Q 000174 684 SGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQE 763 (1931)
Q Consensus 684 s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~ 763 (1931)
..-..|.--+..+.|-++....+.|+|||..........+-.|.+ -+|.| .
T Consensus 521 ---------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K---------pfIYG-----~ 571 (776)
T KOG1123|consen 521 ---------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK---------PFIYG-----P 571 (776)
T ss_pred ---------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC---------ceEEC-----C
Confidence 001123223344555555455789999999998877776655544 36789 8
Q ss_pred ccHHHHHHHHHHhh-cCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCC
Q 000174 764 MRTFQMQETIAKFR-DGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 764 ~~~~~R~~~l~~Fr-~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs 826 (1931)
.++.+|.++|+.|+ +..+|-++-+.|+...||+|.+|++|+..... +-++-.||.||+-|+..
T Consensus 572 Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 572 TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 99999999999999 77899999999999999999999999987654 77888999999987643
No 132
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.80 E-value=6.3e-20 Score=211.82 Aligned_cols=132 Identities=33% Similarity=0.479 Sum_probs=112.0
Q ss_pred HhhhcCCCCChhHHH-HHhccccCCC-----CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHH
Q 000174 1374 LKDKINYPVPASKIL-EALTAASCQE-----TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLY 1447 (1931)
Q Consensus 1374 l~~~l~~~~~~~~ll-~AlT~~s~~~-----~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~ 1447 (1931)
|+++|||.|.+..|+ +||||+|+.. ..||||||||||++|+++++.|||.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 456789999985555 9999999864 3599999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCc
Q 000174 1448 QYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSY 1527 (1931)
Q Consensus 1448 ~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1527 (1931)
.+|.++||+.||+..+-.. . ..
T Consensus 81 ~~a~~~gl~~~i~~~~~~~------------------------------------------------~----------~~ 102 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEE------------------------------------------------K----------SG 102 (220)
T ss_pred HHHHHCCcHHHhccCchHh------------------------------------------------h----------cC
Confidence 9999999999997543000 0 00
Q ss_pred cccccchhhhHHHHHhhheeeccCHHHHHHHHhHhh
Q 000174 1528 RVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1528 ~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~ 1563 (1931)
....+|.+||+|||+|||+|+|+|.+.|..|+..+-
T Consensus 103 ~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~~ 138 (220)
T TIGR02191 103 GRRRESILADAFEALIGAIYLDSGLEAARKFILKLL 138 (220)
T ss_pred CcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 012468999999999999999999999999987653
No 133
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.80 E-value=1.6e-19 Score=206.36 Aligned_cols=131 Identities=31% Similarity=0.476 Sum_probs=110.2
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC------------------------------------------------
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSS------------------------------------------------ 1621 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~------------------------------------------------ 1621 (1931)
..+.-||+.|||+|+|+.||..||||||+..+
T Consensus 41 ~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~ 120 (533)
T KOG1817|consen 41 QSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLG 120 (533)
T ss_pred HhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 34788999999999999999999999997100
Q ss_pred -------CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHH
Q 000174 1622 -------GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQI 1694 (1931)
Q Consensus 1622 -------~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i 1694 (1931)
.+..+|||||||||+.+++.+.++|..+|...+|.|...|++.|.|..++.++.++.+..|+....+....
T Consensus 121 ~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~yahg~dl~-- 198 (533)
T KOG1817|consen 121 VIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYDLC-- 198 (533)
T ss_pred CCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcchh--
Confidence 02368999999999999999999999999999999999999999999999999999999998754432110
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCc
Q 000174 1695 RDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDT 1743 (1931)
Q Consensus 1695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~ 1743 (1931)
| ..+....+++.|||++||+|+|.|...
T Consensus 199 --~-------------------~~E~Kha~an~feavi~a~~l~g~~~~ 226 (533)
T KOG1817|consen 199 --F-------------------ETELKHAMANCFEAVIGAKYLDGGLVV 226 (533)
T ss_pred --h-------------------HHHHHHHHHHHHHHHhHHHHHhcchHH
Confidence 0 113356889999999999999998653
No 134
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.80 E-value=1.1e-18 Score=199.61 Aligned_cols=172 Identities=20% Similarity=0.234 Sum_probs=140.4
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+...++..|+++|.++++.+.+ +|++++++||+|||++|++++.+.+.... ...+.+++|++|+++|+.|+...
T Consensus 10 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-~~~~~~viii~p~~~L~~q~~~~ 88 (203)
T cd00268 10 LLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-KKDGPQALILAPTRELALQIAEV 88 (203)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-ccCCceEEEEcCCHHHHHHHHHH
Confidence 34667778999999999999999998 99999999999999999999877766421 13467899999999999999999
Q ss_pred HHHHc---CCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 371 IREQT---GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 371 l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
++.+. +..+..++|+..... +...+ .+++|+|+||+.|.+.+.++...+.+++++|+||||++.+ ..+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~-~~~~~ 162 (203)
T cd00268 89 ARKLGKHTNLKVVVIYGGTSIDK-----QIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD-MGFED 162 (203)
T ss_pred HHHHhccCCceEEEEECCCCHHH-----HHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-cChHH
Confidence 98864 677888888765422 22222 4889999999999999988888889999999999999985 46777
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.+..+...... .++++++||||..
T Consensus 163 ~~~~~~~~l~~--~~~~~~~SAT~~~ 186 (203)
T cd00268 163 QIREILKLLPK--DRQTLLFSATMPK 186 (203)
T ss_pred HHHHHHHhCCc--ccEEEEEeccCCH
Confidence 77766665432 5889999999873
No 135
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.79 E-value=1.8e-20 Score=192.52 Aligned_cols=114 Identities=46% Similarity=0.751 Sum_probs=90.4
Q ss_pred cchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCC
Q 000174 1403 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDT 1482 (1931)
Q Consensus 1403 ERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~ 1482 (1931)
||||||||+||+++++.|||.+||++++|.||.+|+.+|||.+|+.+|.++||+.||+..+|++..|.+|... +.
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~-----~~ 75 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNE-----DL 75 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHC-----C-
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHH-----HH
Confidence 8999999999999999999999999999999999999999999999999999999999999888777655100 00
Q ss_pred cCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccchhhhHHHHHhhheeeccC
Q 000174 1483 KDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGG 1551 (1931)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G 1551 (1931)
.... ......... ..+...+|++||+|||||||+|+++|
T Consensus 76 ~~~~-----------------------------~~~~~~~~~-~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 76 NNGD-----------------------------SESSISYDP-KNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -----------------------------------C-SSS---SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred Hhcc-----------------------------cccccCCCc-cccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0000 000000011 14566799999999999999999998
No 136
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.78 E-value=2.2e-18 Score=190.86 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=129.2
Q ss_pred cHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC---CcEE
Q 000174 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---YVVG 380 (1931)
Q Consensus 305 ~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---l~v~ 380 (1931)
||+|.++++.+.+ +++++.+|||+|||+++++++...+.. ++..++++++|+++|+.|+.+.+..++. +++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~----~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE----GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT----TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc----CCCceEEEEeecccccccccccccccccccccccc
Confidence 6899999999997 889999999999999999998876653 2345899999999999999999999874 5888
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~ 460 (1931)
.++|+...... ...| ...+++|+|+||+.|.+.+.++...+.++++|||||+|++... .|...+..+.........
T Consensus 77 ~~~~~~~~~~~-~~~~--~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 77 LLHGGQSISED-QREV--LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp EESTTSCHHHH-HHHH--HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTT
T ss_pred ccccccccccc-cccc--ccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCC
Confidence 88887653211 1111 1357999999999999999886667888999999999999985 677777777666544445
Q ss_pred cEEEEEeecCC
Q 000174 461 PSVFGMTASPV 471 (1931)
Q Consensus 461 p~iLgLTATP~ 471 (1931)
+++++|||||.
T Consensus 153 ~~~i~~SAT~~ 163 (169)
T PF00270_consen 153 IQIILLSATLP 163 (169)
T ss_dssp SEEEEEESSST
T ss_pred CcEEEEeeCCC
Confidence 88999999986
No 137
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=3e-17 Score=212.13 Aligned_cols=121 Identities=16% Similarity=0.168 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+.+. +..+..+||||+++..++.|+++|.. .+++...+|| . +.+|+..+.+|+.+...
T Consensus 413 ~~K~~aI~~~I~~~-~~~grpVLIft~Si~~se~Ls~~L~~----~gi~~~vLna-----k--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 413 KEKFDAVVEDIKER-HKKGQPVLVGTVSIEKSELLSKLLKK----AGIPHNVLNA-----K--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCceEeccC-----c--hHHHHHHHHHhcCCCce
Confidence 46888898888764 34577899999999999999999998 6899999999 4 67899999999999999
Q ss_pred EEEEecccccCCCCCCC--------------------------------------CEEEEcCCCCCHHHHHHhhccCCCC
Q 000174 783 LLVATSVAEEGLDIRQC--------------------------------------NVVIRFDLAKTVLAYIQSRGRARKP 824 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRa~R~ 824 (1931)
|+|||++|+||+||+-- =+||--..|.|.+-.-|-+|||||.
T Consensus 481 VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccC
Confidence 99999999999999874 1688888999999999999999999
Q ss_pred CCc--EEEEEecC
Q 000174 825 GSD--YILMIERG 835 (1931)
Q Consensus 825 Gs~--~ivlv~~~ 835 (1931)
|.. ..+++.-+
T Consensus 561 GdpGss~f~lSle 573 (830)
T PRK12904 561 GDPGSSRFYLSLE 573 (830)
T ss_pred CCCCceeEEEEcC
Confidence 866 34444433
No 138
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=5.2e-18 Score=218.29 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+... +..+..+||||+++..++.|+.+|.+ .+++...+|| .+.++++.-+.++++.|.
T Consensus 423 ~~K~~al~~~i~~~-~~~g~pvLI~t~si~~se~ls~~L~~----~gi~~~~Lna-----~~~~~Ea~ii~~ag~~g~-- 490 (796)
T PRK12906 423 DSKFNAVVKEIKER-HAKGQPVLVGTVAIESSERLSHLLDE----AGIPHAVLNA-----KNHAKEAEIIMNAGQRGA-- 490 (796)
T ss_pred HHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH----CCCCeeEecC-----CcHHHHHHHHHhcCCCce--
Confidence 46888888888765 35678899999999999999999998 6899999999 777777777777777776
Q ss_pred EEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecCC
Q 000174 783 LLVATSVAEEGLDIR---QCN-----VVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVaeeGlDip---~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~~ 836 (1931)
|+|||++|+||+||+ +|. +||++++|.|.+.|.|++|||||.|..+ .+++.-++
T Consensus 491 VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 491 VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999999999995 899 9999999999999999999999999883 55555443
No 139
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=6e-16 Score=216.69 Aligned_cols=442 Identities=18% Similarity=0.154 Sum_probs=247.8
Q ss_pred CCCCCCcHHHHHHHHHHh-c-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAK-K-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l-~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.....+++||.+++.++. . .+.|+++++|.|||++.+..+.+..... ....++++++||+ +++.+|.+++.
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~--~~~~~~~liv~p~-s~~~nw~~e~~ 410 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESI--KVYLGPALIVVPA-SLLSNWKREFE 410 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcc--cCCCCCeEEEecH-HHHHHHHHHHh
Confidence 334679999999999966 2 6789999999999999999877633321 1113579999997 67788999998
Q ss_pred HHc-CCc-EEEEeCCCcccccchHHHHhhcCC-----ccEEEEcHHHHHHHH-hcccccccceeEEEEeCCCcccCCCcH
Q 000174 373 EQT-GYV-VGHYCGEMGQDFWDAQRWQREFDT-----KQVLVMTAQILLNIL-RHSIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 373 ~~~-~l~-v~~~~G~~~~~~~~~~~w~~~~~~-----~~IlV~Tpq~L~d~L-~~~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
++. .++ +..++|....-..+.......+.. .+|+++|++.|...+ .++.+.-..|+.+|+||||++.+..+-
T Consensus 411 k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~ 490 (866)
T COG0553 411 KFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSS 490 (866)
T ss_pred hhCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhH
Confidence 876 466 777888654200012222222222 799999999998742 344567788999999999998764322
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC----eEEEecchHHHhhhCCCCceeEEEe
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS----VVCTIKDRKELEKHVPMPSEVVVEY 520 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~----~i~t~~~~~~l~~~~~~p~e~~~~y 520 (1931)
.. +.+.. . .....+.||+||.. +.+..|+++++. ..... ....+......|.......
T Consensus 491 ~~--~~l~~-~---~~~~~~~LtgTPle-----------n~l~eL~sl~~~f~~p~~~~~-~~~~f~~~~~~~~~~~~~~ 552 (866)
T COG0553 491 EG--KALQF-L---KALNRLDLTGTPLE-----------NRLGELWSLLQEFLNPGLLGT-SFAIFTRLFEKPIQAEEDI 552 (866)
T ss_pred HH--HHHHH-H---hhcceeeCCCChHh-----------hhHHHHHHHHHHHhCCccccc-hHHHHHHHHhhhhhhcccc
Confidence 11 11211 1 12446999999952 245555555552 22111 1233444444443332221
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccch--hhHHHHHHHHHHHHHHHH
Q 000174 521 DKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESD--GAANLIQKLRAINYALGE 598 (1931)
Q Consensus 521 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~--~~~~l~~~~~~~~~~l~~ 598 (1931)
... ......+..+...+.++ ..+|.+.+ ....+..+.....++...
T Consensus 553 ~~~---~~~~~~~~~l~~~i~~f-----------------------------~lrr~k~~~~v~~~Lp~k~e~~~~~~l~ 600 (866)
T COG0553 553 GPL---EARELGIELLRKLLSPF-----------------------------ILRRTKEDVEVLKELPPKIEKVLECELS 600 (866)
T ss_pred cch---hhHHHHHHHHHHHHHHH-----------------------------hhcccccchhHHHhCChhhhhhhhhccc
Confidence 110 00000111111111111 12233333 333444444333333221
Q ss_pred HhHHHHHHHHHHH----HHHhhhhhhhhh--------hhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccc
Q 000174 599 LGQWCAYKVAQSF----LTALQNDERANY--------QLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVE 666 (1931)
Q Consensus 599 lg~~~a~~~~~~~----l~~l~~~~~~~~--------~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 666 (1931)
-.+-..+...... ...+........ ..........++++|+.-. +.........
T Consensus 601 ~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~--------------l~~~~~~~~~ 666 (866)
T COG0553 601 EEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPA--------------LVDEGLEATF 666 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcc--------------cccccccccc
Confidence 1111111111100 000000000000 0000000011111111000 0000000000
Q ss_pred CC-ccccccccccccccccCCCchhhhhhhcccCCCCC-HHHHHHHHHH-HHhcCCCCc--eEEEEEeehhHHHHHHHHH
Q 000174 667 GG-TNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVT-PKVQSLIKIL-LKYQHTEDF--RAIIFVERVVAALVLPKVF 741 (1931)
Q Consensus 667 ~~-~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s-~Kv~~Li~lL-~~~~~~~~~--k~IIFv~~r~ta~~L~~~L 741 (1931)
.. ....... .. ... ..-.....+ .|+..+.++| ... ...+. ++|||++...+.+.+...|
T Consensus 667 ~~~~~~~~~~--~~--~~~----------~~~~~~~~s~~k~~~l~~ll~~~~-~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 667 DRIVLLLRED--KD--FDY----------LKKPLIQLSKGKLQALDELLLDKL-LEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred chhhhhhhcc--cc--ccc----------ccchhhhccchHHHHHHHHHHHHH-HhhcccccEEEEeCcHHHHHHHHHHH
Confidence 00 0000000 00 000 000011234 7899998888 444 23455 9999999999999999999
Q ss_pred hcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC--CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 742 AELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG--RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 742 ~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G--~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
.. .++....++| +++..+|+.++++|.++ ..-+|++|.+++.|||+..+++||.||+.||+....|+..
T Consensus 732 ~~----~~~~~~~ldG-----~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~d 802 (866)
T COG0553 732 KA----LGIKYVRLDG-----STPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAID 802 (866)
T ss_pred Hh----cCCcEEEEeC-----CCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHH
Confidence 98 4478999999 88899999999999986 4457888899999999999999999999999999999999
Q ss_pred cCCCCCCcEEEE
Q 000174 820 RARKPGSDYILM 831 (1931)
Q Consensus 820 Ra~R~Gs~~ivl 831 (1931)
|++|.|++-.+.
T Consensus 803 Ra~RigQ~~~v~ 814 (866)
T COG0553 803 RAHRIGQKRPVK 814 (866)
T ss_pred HHHHhcCcceeE
Confidence 999999984333
No 140
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.74 E-value=1.9e-15 Score=197.08 Aligned_cols=121 Identities=23% Similarity=0.297 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...++..|++.|..+ ...+.++||||+++..++.|++.|.+ .++++..+|| ++++.+|.+++++|+.|++
T Consensus 424 ~~~qi~~Ll~eI~~~-~~~g~~vLIf~~tk~~ae~L~~~L~~----~gi~~~~lh~-----~~~~~eR~~~l~~fr~G~i 493 (655)
T TIGR00631 424 TDGQVDDLLSEIRQR-VARNERVLVTTLTKKMAEDLTDYLKE----LGIKVRYLHS-----EIDTLERVEIIRDLRLGEF 493 (655)
T ss_pred ccchHHHHHHHHHHH-HcCCCEEEEEECCHHHHHHHHHHHhh----hccceeeeeC-----CCCHHHHHHHHHHHhcCCc
Confidence 345777888888776 35678999999999999999999998 5789999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcC-----CCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFD-----LAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD-----~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||....-++++
T Consensus 494 ~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~ 549 (655)
T TIGR00631 494 DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMY 549 (655)
T ss_pred eEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEE
Confidence 9999999999999999999999999 79999999999999999854433333
No 141
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=5.1e-16 Score=199.77 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=108.3
Q ss_pred cCCCCCC---cHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 298 KMPEEQA---RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 298 ~~~~~~~---~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..|+..| +|||.++++.++. +++|+.++||+|||++|++|+...+.. +..++||+||++||.|.++.+..
T Consensus 84 ~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~------g~~v~IVTpTrELA~Qdae~m~~ 157 (970)
T PRK12899 84 VSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT------GKPVHLVTVNDYLAQRDCEWVGS 157 (970)
T ss_pred cccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh------cCCeEEEeCCHHHHHHHHHHHHH
Confidence 5677777 9999999999988 899999999999999999998865532 22489999999999999888876
Q ss_pred H---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccccccc-------ceeEEEEeCCCcccC
Q 000174 374 Q---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSIIKME-------AINLLILDECHHAVK 440 (1931)
Q Consensus 374 ~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~l~l~-------~i~lLV~DEaH~~~~ 440 (1931)
+ +|++++.++|++..... ... -.++|+|+||++| +|+++.+.+.++ .+.++|+||||+++-
T Consensus 158 L~k~lGLsV~~i~GG~~~~eq-----~~~-y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 158 VLRWLGLTTGVLVSGSPLEKR-----KEI-YQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhcCCeEEEEeCCCCHHHH-----HHH-cCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 4 58999999998765321 112 2699999999999 999998766555 458999999999974
No 142
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.71 E-value=1.7e-17 Score=171.24 Aligned_cols=120 Identities=44% Similarity=0.775 Sum_probs=103.8
Q ss_pred ccccccccccCCccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceE
Q 000174 1220 TGKLMMADSCANAGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLI 1299 (1931)
Q Consensus 1220 ~~~~~~~~~~~~~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL 1299 (1931)
.+.+.++|+++..++|.|.+|.++|+++.|.|.+|. +++|.|+||..+|. .+.||++||+++||++|.+++||||
T Consensus 16 ~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~----~~~Sy~eYy~~kY~i~L~~~~QPLL 90 (135)
T cd02844 16 SDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGL----GYATYAEYFKEKYGIVLNHPNQPLL 90 (135)
T ss_pred cceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCC----ceeeHHHHHHHHhCceeccCCcceE
Confidence 456899999999999999999999999999999999 99999999876541 4689999999999999999999999
Q ss_pred EeeccccccccCCCccccccccccccccccccceEEEcCCcccccccCC
Q 000174 1300 RGRGVSYCKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348 (1931)
Q Consensus 1300 ~~~~~~~~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp 1348 (1931)
+++.++.++|+|+|+...+.. ........+.++||||+|.++++|
T Consensus 91 ~~~~~~~~~NlL~~~~~~~~~----~~~~~~~~~~v~L~PELC~~~~~p 135 (135)
T cd02844 91 KGKQIFNLHNLLHNRFEEKGE----SEEKEKDRYFVELPPELCSVIDLP 135 (135)
T ss_pred EEecccccceecccccccccc----cccccccceEEEeChHHhccccCC
Confidence 999999999999999875321 112233456789999999999987
No 143
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.6e-16 Score=201.20 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|..++++.+.+. +..+..+||||.++..++.|+.+|.. .+++...+|+ .+.+.++..+.+.|+.|.
T Consensus 431 ~~~K~~Aii~ei~~~-~~~GrpVLV~t~sv~~se~ls~~L~~----~gi~~~vLna-----k~~~~Ea~ii~~Ag~~G~- 499 (908)
T PRK13107 431 ADEKYQAIIKDIKDC-RERGQPVLVGTVSIEQSELLARLMVK----EKIPHEVLNA-----KFHEREAEIVAQAGRTGA- 499 (908)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCEEEEeCcHHHHHHHHHHHHH----CCCCeEeccC-----cccHHHHHHHHhCCCCCc-
Confidence 356888888877765 45688899999999999999999998 7899999999 889999999999999998
Q ss_pred eEEEEecccccCCCCCCC-------------------------------------CEEEEcCCCCCHHHHHHhhccCCCC
Q 000174 782 TLLVATSVAEEGLDIRQC-------------------------------------NVVIRFDLAKTVLAYIQSRGRARKP 824 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~-------------------------------------~lVI~fD~p~s~~~yiQr~GRa~R~ 824 (1931)
|+|||++|+||+||.=- =+||--..+.|.+---|-+|||||.
T Consensus 500 -VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQ 578 (908)
T PRK13107 500 -VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQ 578 (908)
T ss_pred -EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccC
Confidence 99999999999999732 2688889999999999999999998
Q ss_pred CCc
Q 000174 825 GSD 827 (1931)
Q Consensus 825 Gs~ 827 (1931)
|..
T Consensus 579 GDP 581 (908)
T PRK13107 579 GDA 581 (908)
T ss_pred CCC
Confidence 865
No 144
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=9.4e-16 Score=200.20 Aligned_cols=152 Identities=22% Similarity=0.289 Sum_probs=124.7
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc-
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV- 378 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~- 378 (1931)
.+.|-++|++++..+.. .+++++++||+|||+++-.+|...+.. +.++++.+|.++|.+|-+..|...++--
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~------~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD------GQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc------CCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 46799999999999988 899999999999999999988766552 4559999999999999999999887633
Q ss_pred --EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 379 --VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 379 --v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
+++++|+..++ .++.|+|||.++|.+++.++...+..+..|||||+|-+.+. .-.-+-.+.+..+|
T Consensus 191 ~~vGL~TGDv~IN-----------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii~lP 258 (1041)
T COG4581 191 DMVGLMTGDVSIN-----------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVIILLP 258 (1041)
T ss_pred hhccceecceeeC-----------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc-ccchhHHHHHHhcC
Confidence 78899987653 57889999999999999999888999999999999999863 22233334444444
Q ss_pred CCCCcEEEEEeecCCC
Q 000174 457 KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~ 472 (1931)
. ..++++||||..+
T Consensus 259 ~--~v~~v~LSATv~N 272 (1041)
T COG4581 259 D--HVRFVFLSATVPN 272 (1041)
T ss_pred C--CCcEEEEeCCCCC
Confidence 3 3679999999764
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.70 E-value=1.8e-17 Score=202.24 Aligned_cols=173 Identities=20% Similarity=0.236 Sum_probs=118.8
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
....+.-....+|||||++|+..+++ ...=+.|..|+|||+.++-+...+.. .++|||||+..|..|
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~--------~~iL~LvPSIsLLsQ 221 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA--------ARILFLVPSISLLSQ 221 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh--------hheEeecchHHHHHH
Confidence 33455556678999999999999987 34556678899999999987665533 679999999999999
Q ss_pred HHHHHHHHc--CCcEEEEeCCCcccccc-------------------hHHHHhhc--CCccEEEEcHHHHHHHHhccccc
Q 000174 367 QAEVIREQT--GYVVGHYCGEMGQDFWD-------------------AQRWQREF--DTKQVLVMTAQILLNILRHSIIK 423 (1931)
Q Consensus 367 ~~~~l~~~~--~l~v~~~~G~~~~~~~~-------------------~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~ 423 (1931)
..++..... +++...+|++..+.... ...|.... .+--||++|+|.+...-.....-
T Consensus 222 Tlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G 301 (1518)
T COG4889 222 TLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAG 301 (1518)
T ss_pred HHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcC
Confidence 988887653 66667777765432210 11233222 25569999999998765555567
Q ss_pred ccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC--CCCCcEEEEEeecCCC
Q 000174 424 MEAINLLILDECHHAVKKHPYSLVMSEFYHTTS--KEKRPSVFGMTASPVN 472 (1931)
Q Consensus 424 l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~--~~~~p~iLgLTATP~~ 472 (1931)
+..++|||.|||||..+-+--...-..|..... .....++|-|||||--
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred CCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchh
Confidence 889999999999998863211111122222111 1122567999999973
No 146
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.67 E-value=1e-15 Score=192.88 Aligned_cols=177 Identities=21% Similarity=0.262 Sum_probs=126.1
Q ss_pred hhcCCCCCCcHHHHHHHHH--Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQ--AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~--~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
....|..+++.+|.+++.. +++ +|.|..+||+.|||+++-++++...... ++.++++.|-+..+..-...+.
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-----rr~~llilp~vsiv~Ek~~~l~ 290 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-----RRNVLLILPYVSIVQEKISALS 290 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-----hhceeEecceeehhHHHHhhhh
Confidence 4456788999999999754 566 9999999999999999988765444322 4569999998887776666666
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc--cccccceeEEEEeCCCcccCCCcHHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS--IIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
.+. |++|..+.|.-.... .++.-.|.|||.+.-..++..- .-.+..+++||+||-|.+.+.+ -..+
T Consensus 291 ~~~~~~G~~ve~y~g~~~p~~--------~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~-rg~~ 361 (1008)
T KOG0950|consen 291 PFSIDLGFPVEEYAGRFPPEK--------RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKG-RGAI 361 (1008)
T ss_pred hhccccCCcchhhcccCCCCC--------cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccc-cchH
Confidence 653 899999887655432 2356789999999866544331 1357789999999999998753 2333
Q ss_pred HHHH----HhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe
Q 000174 448 MSEF----YHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI 500 (1931)
Q Consensus 448 m~~~----~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~ 500 (1931)
+..+ .-... ....+++|||||..| +..|+..+++.+++.
T Consensus 362 lE~~l~k~~y~~~-~~~~~iIGMSATi~N-------------~~lL~~~L~A~~y~t 404 (1008)
T KOG0950|consen 362 LELLLAKILYENL-ETSVQIIGMSATIPN-------------NSLLQDWLDAFVYTT 404 (1008)
T ss_pred HHHHHHHHHHhcc-ccceeEeeeecccCC-------------hHHHHHHhhhhheec
Confidence 3333 22222 223779999999764 456777888777765
No 147
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.66 E-value=5.6e-14 Score=185.26 Aligned_cols=115 Identities=24% Similarity=0.284 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..++..|++.|..+ ...+.++||||+++..++.|.+.|.. .++++..+|| ++++.+|.+++++|+.|++.
T Consensus 429 ~~q~~~L~~~L~~~-~~~g~~viIf~~t~~~ae~L~~~L~~----~gi~~~~~h~-----~~~~~~R~~~l~~f~~g~i~ 498 (652)
T PRK05298 429 KGQVDDLLSEIRKR-VAKGERVLVTTLTKRMAEDLTDYLKE----LGIKVRYLHS-----DIDTLERVEIIRDLRLGEFD 498 (652)
T ss_pred cccHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHhh----cceeEEEEEC-----CCCHHHHHHHHHHHHcCCce
Confidence 45677888888776 34678999999999999999999998 6789999999 99999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCC-----CCCHHHHHHhhccCCCCCCc
Q 000174 783 LLVATSVAEEGLDIRQCNVVIRFDL-----AKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~lVI~fD~-----p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||....
T Consensus 499 vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G 548 (652)
T PRK05298 499 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG 548 (652)
T ss_pred EEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCC
Confidence 9999999999999999999999986 78999999999999996443
No 148
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=1e-14 Score=181.73 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=120.5
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.++|-.+|++||..+.+ ..++|+|.|.+|||++|-.+|.-. + ....++++-+|-++|-+|-++.|+..++- |
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q-----~h~TR~iYTSPIKALSNQKfRDFk~tF~D-v 367 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-Q-----KHMTRTIYTSPIKALSNQKFRDFKETFGD-V 367 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-H-----hhccceEecchhhhhccchHHHHHHhccc-c
Confidence 46788999999999988 789999999999999988766422 1 23578999999999999999999997753 5
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
++++|+.... ..+.++|||.++|.++|.+|.--+.++.+|||||+|-+-+. .-..+..+.+-.+|.
T Consensus 368 gLlTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEViIMlP~-- 433 (1248)
T KOG0947|consen 368 GLLTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVIIMLPR-- 433 (1248)
T ss_pred ceeecceeeC-----------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeeeeeccc--
Confidence 5889986542 57889999999999999998888899999999999988652 222333344444443
Q ss_pred CcEEEEEeecCCC
Q 000174 460 RPSVFGMTASPVN 472 (1931)
Q Consensus 460 ~p~iLgLTATP~~ 472 (1931)
+.++++||||..|
T Consensus 434 HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 434 HVNFILLSATVPN 446 (1248)
T ss_pred cceEEEEeccCCC
Confidence 4789999999654
No 149
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.64 E-value=6.8e-15 Score=181.30 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=104.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCC------------------CCCceeEEEEccCCC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPS------------------LSFVKSASLIGHNNS 761 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~------------------l~~~~~~~l~G~~~~ 761 (1931)
...|+|+..|+++|... ..-+.|.|||.++..+.+.+..+|...+. +.|.....|.|
T Consensus 1122 ~~~SgKmiLLleIL~mc-eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDG---- 1196 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMC-EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDG---- 1196 (1567)
T ss_pred hhcCcceehHHHHHHHH-HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecC----
Confidence 35689999999999876 34578999999999999999999986532 12344566666
Q ss_pred ccccHHHHHHHHHHhhcCC---ce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 762 QEMRTFQMQETIAKFRDGR---VT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 762 ~~~~~~~R~~~l~~Fr~G~---~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
..+..+|+...++|++-. .+ .||+|.+++-|||+-++|.||.||..|||.-.+|++=|+.|.|+.-
T Consensus 1197 -st~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtK 1266 (1567)
T KOG1015|consen 1197 -STTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTK 1266 (1567)
T ss_pred -cccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcC
Confidence 788899999999999542 22 8999999999999999999999999999999999999999999983
No 150
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.64 E-value=2.1e-15 Score=169.42 Aligned_cols=153 Identities=21% Similarity=0.337 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.+||+||.+++..+.+ +++++.++||||||++++.++.++.. +++|+||+..|+.||.+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---------~~l~~~p~~~l~~Q~~~~~~~ 72 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---------KVLIVAPNISLLEQWYDEFDD 72 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---------EEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---------ceeEecCHHHHHHHHHHHHHH
Confidence 4689999999999983 67899999999999999987766543 799999999999999999976
Q ss_pred HcCCcEEEEeCCCc----------ccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-----------cccccceeEEEE
Q 000174 374 QTGYVVGHYCGEMG----------QDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-----------IIKMEAINLLIL 432 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~----------~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-----------~l~l~~i~lLV~ 432 (1931)
+..-.......... ........-.......+|+++|++.|....... .......++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 73 FGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp HSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 65433322211100 000011111223458899999999999876531 134567889999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|||||+.....|..++. ...+.+|+|||||.
T Consensus 153 DEaH~~~~~~~~~~i~~--------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSSYREIIE--------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHHHHHHHH--------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHHHHHHHc--------CCCCeEEEEEeCcc
Confidence 99999988644777766 23478999999996
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.62 E-value=1.6e-15 Score=196.84 Aligned_cols=375 Identities=12% Similarity=0.066 Sum_probs=224.8
Q ss_pred eCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC-CcEEEEeCCCcccccchHHHHhhcCC
Q 000174 324 LETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG-YVVGHYCGEMGQDFWDAQRWQREFDT 402 (1931)
Q Consensus 324 ~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~-l~v~~~~G~~~~~~~~~~~w~~~~~~ 402 (1931)
+-+|||||.+|+-+|...+.. ++.+|||+|++.|+.|+.+.|+..++ ..+.++|++.+... +...|.+...+
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~~~~G 239 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLAVLRG 239 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHHHhCC
Confidence 336999999999999988873 56799999999999999999999997 88999999877543 66789888764
Q ss_pred -ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC---CCcHH--HHHHHHHhhcCCCCCcEEEEEeecCCCCCCC
Q 000174 403 -KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK---KHPYS--LVMSEFYHTTSKEKRPSVFGMTASPVNLKGV 476 (1931)
Q Consensus 403 -~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~---~~~~~--~im~~~~~~~~~~~~p~iLgLTATP~~~~~~ 476 (1931)
.+|||+|...++ ..+.++++||+||-|.-.- ..+|. ..+..+.. ......+++.||||.-
T Consensus 240 ~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra---~~~~~~lvLgSaTPSl---- 305 (665)
T PRK14873 240 QARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA---HQHGCALLIGGHARTA---- 305 (665)
T ss_pred CCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH---HHcCCcEEEECCCCCH----
Confidence 789999999887 7899999999999997651 12331 11211111 1123557888999962
Q ss_pred CchhHHHHHHHHHHHhcCCeEEEec-chHHHhhhCCCCceeEEEecc-------c----hhhhHHHHHHHHHHHHHHHHH
Q 000174 477 SSQVDCAIKICNLESKLDSVVCTIK-DRKELEKHVPMPSEVVVEYDK-------A----ASLWSLHEQLKQMEVAVEEAA 544 (1931)
Q Consensus 477 ~~~~~~~~~l~~Le~~l~~~i~t~~-~~~~l~~~~~~p~e~~~~y~~-------~----~~~~~l~~~i~~l~~~~~~~~ 544 (1931)
..+............ ..... ....|...++.... . .....+.+.+++....- +.+
T Consensus 306 ----------es~~~~~~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvl 372 (665)
T PRK14873 306 ----------EAQALVESGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVL 372 (665)
T ss_pred ----------HHHHHHhcCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEE
Confidence 111111111111110 00111 11234444443211 0 12334555555554444 555
Q ss_pred hhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 000174 545 QSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQ 624 (1931)
Q Consensus 545 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~ 624 (1931)
...+++....++.+++++..-.|..+...+.-++... .-.++||.+...
T Consensus 373 l~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~---------------~l~Ch~CG~~~~---------------- 421 (665)
T PRK14873 373 VQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGG---------------TPRCRWCGRAAP---------------- 421 (665)
T ss_pred EEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCC---------------eeECCCCcCCCc----------------
Confidence 5677777777777777776555554433221110000 001223321000
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCH
Q 000174 625 LDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTP 704 (1931)
Q Consensus 625 ~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~ 704 (1931)
...|
T Consensus 422 ------------------------------p~~C---------------------------------------------- 425 (665)
T PRK14873 422 ------------------------------DWRC---------------------------------------------- 425 (665)
T ss_pred ------------------------------CccC----------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEE
Q 000174 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784 (1931)
Q Consensus 705 Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vL 784 (1931)
..-+.. -|......++.+.+.|.++ +++.++..+.+ + .++++|. ++.+||
T Consensus 426 -------------p~Cgs~--~l~~~g~Gter~eeeL~~~--FP~~~V~r~d~-----d-------~~l~~~~-~~~~Il 475 (665)
T PRK14873 426 -------------PRCGSD--RLRAVVVGARRTAEELGRA--FPGVPVVTSGG-----D-------QVVDTVD-AGPALV 475 (665)
T ss_pred -------------CCCcCC--cceeeeccHHHHHHHHHHH--CCCCCEEEECh-----H-------HHHHhhc-cCCCEE
Confidence 000011 1223334455666666653 25566666644 2 4889997 599999
Q ss_pred EEec----ccccCCCCCCCCEEEEcCCCC------------CHHHHHHhhccCCCCCCcEEEEEecCChhHHHHHHHHHH
Q 000174 785 VATS----VAEEGLDIRQCNVVIRFDLAK------------TVLAYIQSRGRARKPGSDYILMIERGNLSHATFLRNARN 848 (1931)
Q Consensus 785 VaTd----VaeeGlDip~~~lVI~fD~p~------------s~~~yiQr~GRa~R~Gs~~ivlv~~~~~~~~~~l~~~~~ 848 (1931)
|+|. +++ +++.+|+..|... +...+.|..||+||.+..+.++++. +++|.......+.
T Consensus 476 VGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~~l~~~ 549 (665)
T PRK14873 476 VATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQALIRW 549 (665)
T ss_pred EECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHHHHHhC
Confidence 9999 665 3668877666431 3455689999999988777777774 6666544444445
Q ss_pred HHHHHHHHHHhhccccccccccccccc
Q 000174 849 SEETLRKEAIERTDLSHLKDTSRLISV 875 (1931)
Q Consensus 849 ~e~~l~~~~i~r~~l~~~~~~~~~~~~ 875 (1931)
..+.+.+..+..+....++++.++..+
T Consensus 550 d~~~F~~~EL~~R~~~~~PPf~~la~i 576 (665)
T PRK14873 550 DPVGHAERELAERAEVGFPPAVRMAAV 576 (665)
T ss_pred CHHHHHHHHHHHHHHcCccCceeeEEE
Confidence 566676667766677778887766543
No 152
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.62 E-value=7.6e-15 Score=196.16 Aligned_cols=95 Identities=25% Similarity=0.296 Sum_probs=81.6
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh----cCCceEEEEecccccCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR----DGRVTLLVATSVAEEGL 794 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr----~G~~~vLVaTdVaeeGl 794 (1931)
.++.+++|-|+|+..|..+++.|+.. +.++..+|+ .+....|.+.+++.+ .+...|+|||+|.|-|+
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~----~~~v~LlHS-----Rf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEK----GPKVLLLHS-----RFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhc----CCCEEEEec-----ccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 45789999999999999999999984 337999999 898888888777554 57788999999999999
Q ss_pred CCCCCCEEEEcCCCCCHHHHHHhhccCCCCC
Q 000174 795 DIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 795 Dip~~~lVI~fD~p~s~~~yiQr~GRa~R~G 825 (1931)
|+. ++++|- -+..+.+.|||.||++|.|
T Consensus 509 Did-fd~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 509 DID-FDVLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred ccc-cCeeee--cCCCHHHHHHHHHHHhhcc
Confidence 995 777753 5677889999999999988
No 153
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.61 E-value=5.4e-15 Score=179.73 Aligned_cols=151 Identities=23% Similarity=0.256 Sum_probs=121.1
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.++|-|+|..++..+-+ +.++|.+-|.+|||.+|-.+|..-+.. +.|||+-.|-.+|-+|-++++..-++ .|
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~------kQRVIYTSPIKALSNQKYREl~~EF~-DV 199 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE------KQRVIYTSPIKALSNQKYRELLEEFK-DV 199 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh------cCeEEeeChhhhhcchhHHHHHHHhc-cc
Confidence 36789999999999887 899999999999999999888766653 67899999999999999999988663 47
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
++.+|+...+ ..+..+|||.++|..+|.+|.--+..+.+|||||.|-|++.. -.-+..+-+-..|.
T Consensus 200 GLMTGDVTIn-----------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE-RGVVWEETIIllP~-- 265 (1041)
T KOG0948|consen 200 GLMTGDVTIN-----------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE-RGVVWEETIILLPD-- 265 (1041)
T ss_pred ceeecceeeC-----------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc-cceeeeeeEEeccc--
Confidence 8888887643 467789999999999999998889999999999999998742 11111111112232
Q ss_pred CcEEEEEeecCCC
Q 000174 460 RPSVFGMTASPVN 472 (1931)
Q Consensus 460 ~p~iLgLTATP~~ 472 (1931)
..+.+.||||..|
T Consensus 266 ~vr~VFLSATiPN 278 (1041)
T KOG0948|consen 266 NVRFVFLSATIPN 278 (1041)
T ss_pred cceEEEEeccCCC
Confidence 3678999999664
No 154
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.59 E-value=1.6e-14 Score=163.88 Aligned_cols=163 Identities=28% Similarity=0.401 Sum_probs=129.0
Q ss_pred cCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 298 KMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..++..++++|.++++.+.. +++++.++||+|||.+++.++.+.+.. ....+++|++|+..++.||...+...+
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~----~~~~~~l~~~p~~~~~~~~~~~~~~~~ 78 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR----GKGKRVLVLVPTRELAEQWAEELKKLG 78 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc----cCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 35678899999999999988 699999999999999999988877663 224679999999999999999999876
Q ss_pred C----CcEEEEeCCCcccccchHHHHhhcCCc-cEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHH
Q 000174 376 G----YVVGHYCGEMGQDFWDAQRWQREFDTK-QVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 450 (1931)
Q Consensus 376 ~----l~v~~~~G~~~~~~~~~~~w~~~~~~~-~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~ 450 (1931)
. .....+.+... ...|....... +|+++|++.+.+.+.........+++||+||||++... .+...+..
T Consensus 79 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~ 152 (201)
T smart00487 79 PSLGLKVVGLYGGDSK-----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEK 152 (201)
T ss_pred ccCCeEEEEEeCCcch-----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHH
Confidence 3 33444444322 34555555555 99999999999999887777888999999999999874 56666666
Q ss_pred HHhhcCCCCCcEEEEEeecCCC
Q 000174 451 FYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 451 ~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
++... ...++++++||||..
T Consensus 153 ~~~~~--~~~~~~v~~saT~~~ 172 (201)
T smart00487 153 LLKLL--PKNVQLLLLSATPPE 172 (201)
T ss_pred HHHhC--CccceEEEEecCCch
Confidence 66654 234889999999973
No 155
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.59 E-value=1.7e-15 Score=149.13 Aligned_cols=81 Identities=32% Similarity=0.552 Sum_probs=76.1
Q ss_pred CCccccCCcEEEcccCC----CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccc
Q 000174 1230 ANAGDLEGRIVTAAHSG----KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVS 1305 (1931)
Q Consensus 1230 ~~~~~l~~~vv~~~~~~----~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~ 1305 (1931)
+.+++|.|+||+++|++ ++|+|++|++||||.|+||.. ++.||.+||++|||+.|.+.+||||+|+.++
T Consensus 36 f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~~-------~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s 108 (122)
T cd02843 36 FDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPGP-------EYETFEEYYKKKYKLDIQNLNQPLLDVDHTS 108 (122)
T ss_pred CCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCCC-------CCccHHHHHHHhcCeEeccCCCCcEeecCcc
Confidence 56789999999999998 899999999999999999865 5899999999999999999999999999999
Q ss_pred cccccCCCcccc
Q 000174 1306 YCKNLLSPRFEH 1317 (1931)
Q Consensus 1306 ~~~n~l~~~~~~ 1317 (1931)
.++|||+|++.+
T Consensus 109 ~~lNll~pr~~~ 120 (122)
T cd02843 109 TRLNLLTPRYVN 120 (122)
T ss_pred ccccccCccccc
Confidence 999999999865
No 156
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.57 E-value=1.8e-13 Score=178.81 Aligned_cols=310 Identities=18% Similarity=0.206 Sum_probs=203.0
Q ss_pred CCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 303 QARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..+.+..+.+..+.+ +-+||+++||||||-.--..+.+... ..+..+.+.-|.|.=|.-.++.+.+.++.+++.
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 446666677777666 66899999999999776555443322 245678999999977888888888877776655
Q ss_pred EeCCCcccccchHHHHh-hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHH-HHHHHHHhhcCCCC
Q 000174 382 YCGEMGQDFWDAQRWQR-EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYS-LVMSEFYHTTSKEK 459 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~-~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~-~im~~~~~~~~~~~ 459 (1931)
..|-.. .|+. .-....|-++|-|+|+..+.+... ++.+++|||||+|+=.-+..+. -.++.+....+.
T Consensus 125 ~VGY~i-------Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~-- 194 (845)
T COG1643 125 TVGYSI-------RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRD-- 194 (845)
T ss_pred eeeEEE-------EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCC--
Confidence 544321 1111 114678999999999999987654 8999999999999764322221 122232322221
Q ss_pred CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHH
Q 000174 460 RPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEV 538 (1931)
Q Consensus 460 ~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~ 538 (1931)
.-++|.||||... ..+..+++ +.+..+..+ ..|.+ +.|.+.....+-
T Consensus 195 DLKiIimSATld~--------------~rfs~~f~~apvi~i~GR-------~fPVe--i~Y~~~~~~d~~--------- 242 (845)
T COG1643 195 DLKLIIMSATLDA--------------ERFSAYFGNAPVIEIEGR-------TYPVE--IRYLPEAEADYI--------- 242 (845)
T ss_pred CceEEEEecccCH--------------HHHHHHcCCCCEEEecCC-------ccceE--EEecCCCCcchh---------
Confidence 2689999999642 24455555 444444221 12222 222111000000
Q ss_pred HHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 000174 539 AVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQND 618 (1931)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~ 618 (1931)
T Consensus 243 -------------------------------------------------------------------------------- 242 (845)
T COG1643 243 -------------------------------------------------------------------------------- 242 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhccc
Q 000174 619 ERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVA 698 (1931)
Q Consensus 619 ~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~ 698 (1931)
T Consensus 243 -------------------------------------------------------------------------------- 242 (845)
T COG1643 243 -------------------------------------------------------------------------------- 242 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCC-CCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 699 DGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSL-SFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 699 ~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l-~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
=...+...+..........++||.+-......+.+.|.+ ..+ ..+.+..+|| .++..+|.++++.--
T Consensus 243 ------l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~-~~l~~~~~i~PLy~-----~L~~~eQ~rvF~p~~ 310 (845)
T COG1643 243 ------LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK-AELGDDLEILPLYG-----ALSAEEQVRVFEPAP 310 (845)
T ss_pred ------HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh-ccccCCcEEeeccc-----cCCHHHHHhhcCCCC
Confidence 000011111111123456799999999999988888886 223 4688999999 999999999877666
Q ss_pred cCCceEEEEecccccCCCCCCCCEEE--------EcCCC----------CCHHHHHHhhccCCCCCCc--EEEE
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVI--------RFDLA----------KTVLAYIQSRGRARKPGSD--YILM 831 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI--------~fD~p----------~s~~~yiQr~GRa~R~Gs~--~ivl 831 (1931)
.|+-+|++||+|||.+|.||++.+|| .||+- -|-.+..||.|||||.+.. |.+.
T Consensus 311 ~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLy 384 (845)
T COG1643 311 GGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLY 384 (845)
T ss_pred CCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEec
Confidence 77666999999999999999999999 45543 3556778999999996554 5554
No 157
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.55 E-value=2.3e-13 Score=176.35 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=106.1
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc----C
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT----G 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~----~ 376 (1931)
...+.++.+.+..+.+ +.++|.++||+|||...-..|++.... .++..++++--|.|--|.-.++++..-- |
T Consensus 172 LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~---~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIE---SGAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred CccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHh---cCCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 3456778888888877 788999999999997777666554332 2356778888899877777777666532 3
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH-HHHHHHhhc
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL-VMSEFYHTT 455 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~-im~~~~~~~ 455 (1931)
-.|+.-.+-.+ .......+++||.|+|++.|.. .-.+..+..||+||+|.-.-++.|-. +++.++...
T Consensus 249 ~~VGYqvrl~~----------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRLES----------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN 317 (924)
T ss_pred CeeeEEEeeec----------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC
Confidence 22222111111 1113578999999999999876 45688999999999997655444443 445555443
Q ss_pred CCCCCcEEEEEeecCC
Q 000174 456 SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~ 471 (1931)
+.-++++||||..
T Consensus 318 ---p~LkvILMSAT~d 330 (924)
T KOG0920|consen 318 ---PDLKVILMSATLD 330 (924)
T ss_pred ---CCceEEEeeeecc
Confidence 4578999999964
No 158
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=164.13 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC----
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---- 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---- 376 (1931)
..|-.+|.+.+...-. ..++|++||-+|||++....|..+++. ....-||+++||.+|+.|....+...++
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE----SDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh----cCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 5688999999988876 789999999999999999888877774 4567899999999999999888877653
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc---ccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH---SIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~---~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
.+...+.|.+..+. +... -+|+|+|+-|+.|-..|-. ..-...++.++||||+|.+.+. --..+...+..
T Consensus 586 ~rg~sl~g~ltqEY-sinp-----~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~-ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQEY-SINP-----WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNE-EDGLLWEQLLL 658 (1330)
T ss_pred ccchhhHhhhhHHh-cCCc-----hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccc-ccchHHHHHHH
Confidence 23344555554322 1112 2799999999999887754 3345789999999999999863 22333333333
Q ss_pred hcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEE
Q 000174 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVC 498 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~ 498 (1931)
.. ...+|+||||..+ +......+.+.+.-..-.+.
T Consensus 659 li----~CP~L~LSATigN------~~l~qkWlnq~~R~~sr~~e 693 (1330)
T KOG0949|consen 659 LI----PCPFLVLSATIGN------PNLFQKWLNQRGRAMSRNAE 693 (1330)
T ss_pred hc----CCCeeEEecccCC------HHHHHHHHHHHHhhcCCCee
Confidence 22 2458999999764 33334444445554443333
No 159
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.55 E-value=1.9e-12 Score=170.64 Aligned_cols=131 Identities=11% Similarity=0.102 Sum_probs=94.2
Q ss_pred CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCC-CCCch
Q 000174 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLK-GVSSQ 479 (1931)
Q Consensus 401 ~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~-~~~~~ 479 (1931)
....|+++||++|.+.+-.+.+.+..+..||||||||+.+++.|..|++.|.... ..+.|.+|||+|.... +.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n---~~gfIkafSdsP~~~~~g~--- 79 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKN---KTGFIKAFSDNPEAFTMGF--- 79 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhC---CCcceEEecCCCcccccch---
Confidence 6788999999999999999999999999999999999999999999998776543 4589999999998532 21
Q ss_pred hHHHHHHHHHHHhcCC-eE-EEecchHHHhhhCCC--CceeEEEeccchhhhHHHHHHHHHHHHHH
Q 000174 480 VDCAIKICNLESKLDS-VV-CTIKDRKELEKHVPM--PSEVVVEYDKAASLWSLHEQLKQMEVAVE 541 (1931)
Q Consensus 480 ~~~~~~l~~Le~~l~~-~i-~t~~~~~~l~~~~~~--p~e~~~~y~~~~~~~~l~~~i~~l~~~~~ 541 (1931)
..+..+...|.- .+ ..+....++..++.. |....+....+..+..+...|..++....
T Consensus 80 ----~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l~~~l~~~l 141 (814)
T TIGR00596 80 ----SPLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCI 141 (814)
T ss_pred ----HHHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 244444444432 22 333566677777665 55555555656666666666655554443
No 160
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=1.3e-14 Score=138.27 Aligned_cols=73 Identities=34% Similarity=0.515 Sum_probs=71.5
Q ss_pred CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCC
Q 000174 748 SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 748 ~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~G 825 (1931)
.++++..+|| +++..+|++++++|++++.+|||||+++++|||+|.+++||+||+|||+..|+|++||++|.|
T Consensus 6 ~~~~~~~i~~-----~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHG-----DMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEEST-----TSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEEC-----CCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 6899999999 999999999999999999999999999999999999999999999999999999999999987
No 161
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.54 E-value=2.1e-12 Score=153.63 Aligned_cols=118 Identities=23% Similarity=0.305 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEE
Q 000174 705 KVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLL 784 (1931)
Q Consensus 705 Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vL 784 (1931)
.+.-|+.-+... ...+.|++|-+=|+.+|+.|.++|.+ .|+++.++|+ +...-+|.+++++.|.|.++||
T Consensus 431 QvdDL~~EI~~r-~~~~eRvLVTtLTKkmAEdLT~Yl~e----~gikv~YlHS-----didTlER~eIirdLR~G~~DvL 500 (663)
T COG0556 431 QVDDLLSEIRKR-VAKNERVLVTTLTKKMAEDLTEYLKE----LGIKVRYLHS-----DIDTLERVEIIRDLRLGEFDVL 500 (663)
T ss_pred cHHHHHHHHHHH-HhcCCeEEEEeehHHHHHHHHHHHHh----cCceEEeeec-----cchHHHHHHHHHHHhcCCccEE
Confidence 444555544442 34568999999999999999999999 6899999999 9999999999999999999999
Q ss_pred EEecccccCCCCCCCCEEEEcCCC-----CCHHHHHHhhccCCCCCCcEEEEE
Q 000174 785 VATSVAEEGLDIRQCNVVIRFDLA-----KTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 785 VaTdVaeeGlDip~~~lVI~fD~p-----~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
|.-+.+-||||+|.|.+|..+|.. .|-.+.||-+|||+|.-..-++|.
T Consensus 501 VGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 501 VGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred EeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEE
Confidence 999999999999999999999865 589999999999999766555554
No 162
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.52 E-value=1.4e-12 Score=178.31 Aligned_cols=139 Identities=22% Similarity=0.214 Sum_probs=95.1
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
.+...+ .++|+.|.++++.+.+ +++++.++||+|||++|++|+...+. .+.+++|.+||++|..|+..
T Consensus 238 ~~~~~~-~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~------~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 238 NIDRLG-LEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI------TEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred hhhhcC-CccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc------CCCeEEEEeCcHHHHHHHHH
Confidence 343444 4589999997775433 77899999999999999999876544 24579999999999999865
Q ss_pred -H---HHHHcC--CcEEEEeCCCcc--------------c------------ccc-----------------hHHHHh--
Q 000174 370 -V---IREQTG--YVVGHYCGEMGQ--------------D------------FWD-----------------AQRWQR-- 398 (1931)
Q Consensus 370 -~---l~~~~~--l~v~~~~G~~~~--------------~------------~~~-----------------~~~w~~-- 398 (1931)
+ +.+.++ +++.++.|..+. . .|- ...|..
T Consensus 311 ~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~ 390 (850)
T TIGR01407 311 KDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVR 390 (850)
T ss_pred HHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhh
Confidence 3 344444 666666554311 0 000 001222
Q ss_pred ----------------------hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 399 ----------------------EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 399 ----------------------~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
....++|||+.+.-|++.+.....-+....+||||||||+.+
T Consensus 391 ~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 391 HDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred cCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 123679999999999987754332345567999999999973
No 163
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.51 E-value=1.2e-12 Score=166.05 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=101.9
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.++....+|+..|+--..++.. +..-+.||||.|||.--++....+.. .++++++|+||..|+.|.++.++++
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~------kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK------KGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh------cCCeEEEEecCHHHHHHHHHHHHHH
Confidence 4455566999999999888888 78889999999999665555444433 3588999999999999999999987
Q ss_pred c---C-CcEEE-EeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC
Q 000174 375 T---G-YVVGH-YCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 375 ~---~-l~v~~-~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
. + +.+.+ +||.+.... +.+...++- .+.+|+|+|.+-|....+. +.--++++|++|.+|-++..
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~e-kee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKE-KEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HhhcCCcceeeeeccccchHH-HHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhc
Confidence 5 2 44433 788765432 112222222 3799999999999876654 33357999999999988864
No 164
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.5e-14 Score=155.28 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=174.0
Q ss_pred hhhHHHHHHHcC-CCcCCHHHHHHHhcCCCCCC-----------------CCCCCchhHHHHHHHHHHHHHHHHHHHhCC
Q 000174 1589 SVDFHALEDALK-IKFKDRGLLVEAITHASRPS-----------------SGVSCYQRLEFVGDAVLDHLITKHLFFSYT 1650 (1931)
Q Consensus 1589 ~~~~~~le~~lg-y~F~~~~LL~~AlTH~S~~~-----------------~~~~~yeRLEfLGDavLd~~v~~~l~~~~p 1650 (1931)
...+..|+++|| -.| ..++|..|||.+||.. ++..+|+-|--.|-.++++.|++||-.+||
T Consensus 62 ~sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyP 140 (333)
T KOG3769|consen 62 NSELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYP 140 (333)
T ss_pred hHHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445899999999 555 5788999999999821 234689999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHH
Q 000174 1651 NLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVES 1730 (1931)
Q Consensus 1651 ~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEA 1730 (1931)
.+++..|+.+-+.+.+.+.||.+|..+|+.++++...-... +.....+...++|-|
T Consensus 141 rlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~------------------------~eisq~ess~~aI~A 196 (333)
T KOG3769|consen 141 RLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV------------------------GEISQDESSRRAIGA 196 (333)
T ss_pred CCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc------------------------hhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999987765433211 011223677889999
Q ss_pred HHhHhhccccCCceeEEeeec-cCCCCCCC--CCCCCCCChHHHHHHHHhhcCC-ceeEEecc-C-----CeEEEEEEEC
Q 000174 1731 IAGAIFLDSGRDTSVVWQVFQ-PLLDPMVT--PETLPMHPVRELQERCQQQAEG-LEYKASRS-G-----NLATVEVYID 1800 (1931)
Q Consensus 1731 iiGAiylDsg~~~~~v~~~~~-~~l~~~i~--~~~~~~~P~~~L~e~~~~~~~~-~~y~~~~~-g-----~~f~v~V~v~ 1800 (1931)
++|++++..++. .|.+|+. +++...+. .+--..+|.+.|.++|++++.. +++++..+ | |.|.|.++.+
T Consensus 197 l~~~~~~ek~~~--~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~ 274 (333)
T KOG3769|consen 197 LLGSVGLEKGFN--FVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSG 274 (333)
T ss_pred HHhcccHHHHHH--HHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecC
Confidence 999999988876 3456653 44444444 2334679999999999998865 68887654 2 5899999999
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1801 GVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1801 g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+.+|.|.|.|-+.|+..||..||.++=..
T Consensus 275 kkllGqG~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 275 KKLLGQGQGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred chhhccCcchHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988654
No 165
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.51 E-value=1.2e-13 Score=145.65 Aligned_cols=117 Identities=27% Similarity=0.434 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|...+.+++.... ..+.++||||++...+..+.+.|.. .+..+..+|| .++..+|..++++|++|...+
T Consensus 12 ~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~-----~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 12 EKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHG-----DGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred HHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEEC-----CCCHHHHHHHHHHHHcCCCcE
Confidence 68888988888763 2578999999999999999999987 4678999999 899999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 784 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 784 LVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
||+|+++++|+|+|.+++||.+++||+...|+|++||++|.|+...+
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~ 128 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTA 128 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceE
Confidence 99999999999999999999999999999999999999999976443
No 166
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=2.4e-13 Score=175.79 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|...|++.+... +..+..+||||+++..++.|.++|.. .+++...||+ .+.+|+..+.+|+.+..
T Consensus 580 ~~eK~~Ali~~I~~~-~~~grpVLIft~Sve~sE~Ls~~L~~----~gI~h~vLna-------kq~~REa~Iia~AG~~g 647 (1025)
T PRK12900 580 RREKYNAIVLKVEEL-QKKGQPVLVGTASVEVSETLSRMLRA----KRIAHNVLNA-------KQHDREAEIVAEAGQKG 647 (1025)
T ss_pred HHHHHHHHHHHHHHH-hhCCCCEEEEeCcHHHHHHHHHHHHH----cCCCceeecC-------CHHHhHHHHHHhcCCCC
Confidence 346889999998765 34678899999999999999999998 6899999987 47789999999999999
Q ss_pred eEEEEecccccCCCCC---CCC-----EEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 782 TLLVATSVAEEGLDIR---QCN-----VVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip---~~~-----lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
.|+|||++|+||+||+ .|. +||.++.|.+.+.|.||+|||||.|.. .++++..
T Consensus 648 ~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSl 710 (1025)
T PRK12900 648 AVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSL 710 (1025)
T ss_pred eEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEech
Confidence 9999999999999999 554 349999999999999999999999977 3444443
No 167
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=3.5e-13 Score=143.60 Aligned_cols=142 Identities=27% Similarity=0.316 Sum_probs=108.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC--CcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG--YVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~--l~v~~~~G~~~~~~~~~~~ 395 (1931)
+++++.++||+|||.+++.++.+.... ...++++|++|++.|+.|+.+.+..... ..+..+.+.... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS----LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSI----KQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc----ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcch----hHH
Confidence 478999999999999999998877653 3456899999999999999999998874 778887776432 233
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
+.......+|+++|++.+...+.........+++||+||+|++.........+.... .....++++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~---~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILL---KLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHh---hCCccceEEEEeccC
Confidence 334457899999999999887776555667899999999999987533332211111 123447899999998
No 168
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.43 E-value=1.3e-11 Score=151.96 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=85.4
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCC-C-CC--ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPS-L-SF--VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~-l-~~--~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlD 795 (1931)
+..-++||-...+..+.+++.|.+... + .. ..+..++| .++.++|.++.+.--.|.-+|++||++||..|.
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~-----aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlT 331 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG-----ALPSEEQSRVFDPAPPGKRKVILSTNIAETSLT 331 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc-----cCCHHHhhccccCCCCCcceEEEEcceeeeeEE
Confidence 445789999999888888888876421 1 11 14677899 999999999977777888899999999999999
Q ss_pred CCCCCEEE--------EcCC----------CCCHHHHHHhhccCCCCCCc--EEEEE
Q 000174 796 IRQCNVVI--------RFDL----------AKTVLAYIQSRGRARKPGSD--YILMI 832 (1931)
Q Consensus 796 ip~~~lVI--------~fD~----------p~s~~~yiQr~GRa~R~Gs~--~ivlv 832 (1931)
|+++.+|| .|++ |-|-.+-.||.|||||.|.. |.+..
T Consensus 332 I~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 332 IDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred ecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 99999998 4665 44677789999999997654 55553
No 169
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.37 E-value=1.4e-12 Score=122.46 Aligned_cols=75 Identities=36% Similarity=0.606 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCC--cceeEEC--CCCCCHHHHHHHHHHHHHHHHh
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKG--WTDECVG--EPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~--~~~~g~g--~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+|++.|+|+|++++|+.|+|++..+.||+|.+.|+++|+|.+..+. +..++.+ +++++||+||..||+.||+.|.
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999988763 4556666 8999999999999999999873
No 170
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.36 E-value=3.4e-12 Score=155.34 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=98.8
Q ss_pred HHHHHHHHHhc--------------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 307 YQLDVLEQAKK--------------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 307 ~Q~eai~~~l~--------------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
||.+++.+++. +++|+++++|+|||++++..+..+.... .......+|||||+ .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~-~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEF-PQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCC-TTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcc-ccccccceeEeecc-chhhhhhhhhc
Confidence 79999988743 5689999999999999999887554421 11122359999999 88899999999
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH---hcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL---RHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L---~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
+++ .+++..+.|... ............+|+|+|++.+.... ....+...++++||+||+|.+.+.. ..
T Consensus 79 ~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSE----RRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HHSGT-TS-EEEESSSCH----HHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SH
T ss_pred cccccccccccccccccc----cccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--cc
Confidence 998 467777777651 11122223467899999999998110 0111233459999999999997532 22
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
..+.+.. -..+++++|||||..
T Consensus 153 ~~~~l~~----l~~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 153 RYKALRK----LRARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHHHC----CCECEEEEE-SS-SS
T ss_pred ccccccc----cccceEEeecccccc
Confidence 2222222 124789999999996
No 171
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.32 E-value=4.6e-12 Score=121.67 Aligned_cols=81 Identities=38% Similarity=0.592 Sum_probs=75.1
Q ss_pred HHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHH
Q 000174 736 VLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYI 815 (1931)
Q Consensus 736 ~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yi 815 (1931)
.+.+.|.. .++++..+|| +++..+|.++++.|+++...|||+|+++++|+|+|.++.||.+++|+++..|+
T Consensus 2 ~l~~~l~~----~~~~~~~~~~-----~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~ 72 (82)
T smart00490 2 ELAELLKE----LGIKVARLHG-----GLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHHH----CCCeEEEEEC-----CCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHH
Confidence 35566666 4688999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCC
Q 000174 816 QSRGRARKPG 825 (1931)
Q Consensus 816 Qr~GRa~R~G 825 (1931)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999986
No 172
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.30 E-value=1.5e-11 Score=158.82 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.+.|+..++++|......+..++|||++....+..+...|.. .++....+.| .|+...|.+.+..|..+..
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~----~~~~~~~~~g-----~~~~~~r~~s~~~~~~~~~ 590 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF----KGFVFLRYDG-----EMLMKIRTKSFTDFPCDPL 590 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh----cccccchhhh-----hhHHHHHHhhhcccccCcc
Confidence 577888898888854222224999999999999999988874 6788889999 9999999999999995443
Q ss_pred -e-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 782 -T-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 782 -~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
. .|++..++.-|+|+..+++|+..|+-|||..-.|.+-||+|.|+.--|.+
T Consensus 591 ~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 591 VTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 3 66888999999999999999999999999999999999999999855554
No 173
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.27 E-value=5.3e-12 Score=143.90 Aligned_cols=108 Identities=32% Similarity=0.378 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCcCCcccCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEE
Q 000174 1809 NPQKKMAQKLAARNALAVLKEKETAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTY 1888 (1931)
Q Consensus 1809 g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~ 1888 (1931)
|.+...|++.||..||..|...............+ ...|||.|||||.+++.+ |.|++++++||+|.+.|++
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~~~~~~g-------~KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~ 73 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVMLNADPG-------AKSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVF 73 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhcccccCcc-------cCChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEE
Confidence 45668899999999999998765444443222222 157999999999999955 5599999999999999999
Q ss_pred EEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhCC
Q 000174 1889 AVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1889 ~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
+|+|. ..+++|.| +|||.||+.||..||.+|+++.|
T Consensus 74 rvtvg----~~~a~GeG---~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 74 RVTVG----EITATGEG---KSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred EEEEe----eeEEecCC---CchhHHHHHHHHHHHHHHhcCCC
Confidence 99995 55788999 99999999999999999998764
No 174
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.27 E-value=1.3e-09 Score=147.07 Aligned_cols=131 Identities=18% Similarity=0.186 Sum_probs=92.9
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH-HHH---
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA-EVI--- 371 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~-~~l--- 371 (1931)
..+.|+-|.++...+.+ ..+++.++||+|||++|++|+.... .+.++||++||++|+.|.. +.+
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 36899999996666543 6688999999999999999976532 2467999999999999984 444
Q ss_pred HHHcCCcEEEEeCCCcccc--------------------------c-----------------chHHHHhh---------
Q 000174 372 REQTGYVVGHYCGEMGQDF--------------------------W-----------------DAQRWQRE--------- 399 (1931)
Q Consensus 372 ~~~~~l~v~~~~G~~~~~~--------------------------~-----------------~~~~w~~~--------- 399 (1931)
.+.+++++..+.|+.+.-. | ....|..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 4456777766654431000 0 00113221
Q ss_pred ---------------cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 400 ---------------FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 400 ---------------~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+|||+....|+..+..+. .+...+.+|||||||+-
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 1357999999999888765433 25678999999999987
No 175
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.26 E-value=1.7e-10 Score=139.81 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
....++|-.+.+..+.+ +-+||.++||||||-+.--.+.+--- ...++++-+--|.|.-+.-++..+.+-+|.+.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkL 338 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKL 338 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHHhCccc
Confidence 34567777888888887 67789999999999653322221100 12345588888999998888888887776665
Q ss_pred EEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC-CCcHHHHHHHHHhhcCC
Q 000174 380 GHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK-KHPYSLVMSEFYHTTSK 457 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~-~~~~~~im~~~~~~~~~ 457 (1931)
+.-+|-.- . +... -...-|=+||-|+|+.-+... ..+...++||+||||.-.- ..-.-.+++.+....+
T Consensus 339 G~eVGYsI-R------FEdcTSekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp- 409 (902)
T KOG0923|consen 339 GHEVGYSI-R------FEDCTSEKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP- 409 (902)
T ss_pred ccccceEE-E------eccccCcceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC-
Confidence 44333211 0 0000 134556799999999766432 5688999999999995432 1122233444544433
Q ss_pred CCCcEEEEEeecCC
Q 000174 458 EKRPSVFGMTASPV 471 (1931)
Q Consensus 458 ~~~p~iLgLTATP~ 471 (1931)
.-++|..|||..
T Consensus 410 --dLKllIsSAT~D 421 (902)
T KOG0923|consen 410 --DLKLLISSATMD 421 (902)
T ss_pred --cceEEeeccccC
Confidence 367899999964
No 176
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.26 E-value=6.2e-10 Score=135.73 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC--CCCC------------CceeEEEEccCCCccccHHH
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL--PSLS------------FVKSASLIGHNNSQEMRTFQ 768 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~--~~l~------------~~~~~~l~G~~~~~~~~~~~ 768 (1931)
++|+..+++++.+- ..-+.++|||.+...+.+.|.++|.+. |.-. ......+.| ..+..+
T Consensus 702 ~pk~V~~~~~~des-~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG-----~t~a~~ 775 (1387)
T KOG1016|consen 702 GPKIVISLEILDES-TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDG-----TTSAAD 775 (1387)
T ss_pred CCceEEEEeeeccc-cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccC-----Ccccch
Confidence 35555555555543 345789999999999999999999864 1111 122334555 677889
Q ss_pred HHHHHHHhhcCC---ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 769 MQETIAKFRDGR---VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 769 R~~~l~~Fr~G~---~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++.|++|++.. .-+|++|..+.-|||+-.++.+|.||..|++.--.|.+-|+.|.|++
T Consensus 776 rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 776 REKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred HHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc
Confidence 999999999532 24889999999999999999999999999999999999999999988
No 177
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.3e-10 Score=140.91 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEE--------EcCCCCCHHHH----------HHhhccCCCC
Q 000174 763 EMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVI--------RFDLAKTVLAY----------IQSRGRARKP 824 (1931)
Q Consensus 763 ~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI--------~fD~p~s~~~y----------iQr~GRa~R~ 824 (1931)
-++..+|.++++.--.|.--++|||+|||..|.||++.+|| .||.-..+.+| -||.|||||.
T Consensus 613 LLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRt 692 (1172)
T KOG0926|consen 613 LLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRT 692 (1172)
T ss_pred hcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCC
Confidence 56788889998888899888999999999999999999999 47766666665 4999999998
Q ss_pred CCc
Q 000174 825 GSD 827 (1931)
Q Consensus 825 Gs~ 827 (1931)
|..
T Consensus 693 gpG 695 (1172)
T KOG0926|consen 693 GPG 695 (1172)
T ss_pred CCC
Confidence 766
No 178
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=2e-09 Score=136.64 Aligned_cols=135 Identities=18% Similarity=0.124 Sum_probs=98.2
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
++....--..|++.|.-+.-.++. .-|+.+.||.|||+++.+++..... .+..|-|++|+--||.|-++.+..
T Consensus 69 Ea~~R~lg~r~ydvQlig~l~Ll~-G~VaEM~TGEGKTLvA~l~a~l~AL------~G~~VhvvT~NdyLA~RDae~m~~ 141 (764)
T PRK12326 69 EAAERTLGLRPFDVQLLGALRLLA-GDVIEMATGEGKTLAGAIAAAGYAL------QGRRVHVITVNDYLARRDAEWMGP 141 (764)
T ss_pred HHHHHHcCCCcchHHHHHHHHHhC-CCcccccCCCCHHHHHHHHHHHHHH------cCCCeEEEcCCHHHHHHHHHHHHH
Confidence 344444557789999988876665 4578999999999999998765443 256699999999999998888876
Q ss_pred H---cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-----HHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 374 Q---TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-----LNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 374 ~---~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-----~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
+ +|++|+.+.+++... . ++..-.++|+.+|..-| .|.+.. +......+.+.|+||+|.++-+
T Consensus 142 ly~~LGLsvg~i~~~~~~~-----e-rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID 213 (764)
T PRK12326 142 LYEALGLTVGWITEESTPE-----E-RRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD 213 (764)
T ss_pred HHHhcCCEEEEECCCCCHH-----H-HHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec
Confidence 4 589999998876532 1 22224689999998653 333321 1223466889999999988743
No 179
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=4.7e-10 Score=135.97 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=79.1
Q ss_pred CceEEEEEeehh----HHHHHHHHHhcCCCC--CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCC
Q 000174 721 DFRAIIFVERVV----AALVLPKVFAELPSL--SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGL 794 (1931)
Q Consensus 721 ~~k~IIFv~~r~----ta~~L~~~L~~~~~l--~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGl 794 (1931)
..-++||..-.+ ++..+.+.|.++..- ..+.+..|.. .++..-|.+++++-..|.-+++|||++||..|
T Consensus 563 ~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYS-----QLp~dlQ~kiFq~a~~~vRK~IvATNIAETSL 637 (1042)
T KOG0924|consen 563 PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYS-----QLPADLQAKIFQKAEGGVRKCIVATNIAETSL 637 (1042)
T ss_pred CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehh-----hCchhhhhhhcccCCCCceeEEEeccchhhce
Confidence 345777877554 344555555554222 3688888888 89999999998887788888999999999999
Q ss_pred CCCCCCEEEEcCC------------------CCCHHHHHHhhccCCCCC--CcEEEEE
Q 000174 795 DIRQCNVVIRFDL------------------AKTVLAYIQSRGRARKPG--SDYILMI 832 (1931)
Q Consensus 795 Dip~~~lVI~fD~------------------p~s~~~yiQr~GRa~R~G--s~~ivlv 832 (1931)
.||++.+||.-.. |-+-..--||.|||||.| ..|.+.+
T Consensus 638 Ti~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 638 TIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred eecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehh
Confidence 9999999995332 334455579999999965 4466554
No 180
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.21 E-value=2.8e-11 Score=111.90 Aligned_cols=68 Identities=40% Similarity=0.524 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
||++.|+|+|++++|..|.|+++...||.|.+.|++.|.|++ .....|.| +|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~---~~~~~g~g---~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGG---KITGEGEG---SSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECC---EEEEEeec---CCHHHHHHHHHHHHHHhC
Confidence 799999999999999999999988999999999999999964 24557888 999999999999999875
No 181
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.20 E-value=1e-09 Score=151.01 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH----
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE---- 369 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~---- 369 (1931)
.+..++|+-|.++...+.+ +.++|-++||+|||++|++|+...... .++++||-++|+.|..|...
T Consensus 253 ~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-----~~~~vvIsT~T~~LQ~Ql~~kDiP 327 (928)
T PRK08074 253 MPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-----KEEPVVISTYTIQLQQQLLEKDIP 327 (928)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-----cCCeEEEEcCCHHHHHHHHHhhHH
Confidence 3457899999997777654 668899999999999999998765542 35789999999999999765
Q ss_pred HHHHHcC--CcEEEEeCCCcc--------------------------------------ccc-----chHHHHh------
Q 000174 370 VIREQTG--YVVGHYCGEMGQ--------------------------------------DFW-----DAQRWQR------ 398 (1931)
Q Consensus 370 ~l~~~~~--l~v~~~~G~~~~--------------------------------------~~~-----~~~~w~~------ 398 (1931)
.+++.++ +++.++.|..+. +.+ ....|..
T Consensus 328 ~L~~~~~~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~ 407 (928)
T PRK08074 328 LLQKIFPFPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGE 407 (928)
T ss_pred HHHHHcCCCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCc
Confidence 3555554 345544333210 000 0001222
Q ss_pred --------------------hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 399 --------------------EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 399 --------------------~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
....++|||+....|+..+..+.--+...+++|||||||+-+
T Consensus 408 ~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 408 SDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred ccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 123579999999999887744333356689999999999974
No 182
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.18 E-value=1.9e-09 Score=140.09 Aligned_cols=127 Identities=19% Similarity=0.127 Sum_probs=94.6
Q ss_pred CCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000174 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GY 377 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l 377 (1931)
...|++.|..+-- ++.+.-|+-+.||.|||+++.+|+.-... .+..|-||+|+--||.|-++.+..++ |+
T Consensus 80 Gm~~ydVQliGg~-~Lh~G~iaEM~TGEGKTLvA~l~a~l~al------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl 152 (913)
T PRK13103 80 GMRHFDVQLIGGM-TLHEGKIAEMRTGEGKTLVGTLAVYLNAL------SGKGVHVVTVNDYLARRDANWMRPLYEFLGL 152 (913)
T ss_pred CCCcchhHHHhhh-HhccCccccccCCCCChHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 3677778876532 34578899999999999999998764433 25669999999999999998888754 89
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------ccccceeEEEEeCCCcccC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~~i~lLV~DEaH~~~~ 440 (1931)
+|+++.+++.... ++..-.++|+++|...| +|.|+... .....+.++|+||+|.++=
T Consensus 153 ~v~~i~~~~~~~e------rr~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 153 SVGIVTPFQPPEE------KRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred EEEEECCCCCHHH------HHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 9999988765422 12223599999999886 34443321 1237889999999999974
No 183
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.17 E-value=4.3e-11 Score=121.56 Aligned_cols=92 Identities=28% Similarity=0.535 Sum_probs=74.3
Q ss_pred cccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCC
Q 000174 1233 GDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLS 1312 (1931)
Q Consensus 1233 ~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~ 1312 (1931)
.+|.|.+|.++|+++.|.|.+|.++++|.|.|+...+ ...||++||+++||+.|.+++||||++....+..
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~-----~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~~~---- 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDG-----TEITFVEYYKKQYNIEITDLNQPLLVSRPKRRDP---- 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCC-----CeeeHHHHHHHHcCCccccCCCCcEEeecccccc----
Confidence 5678999999999999999999999999999986653 3679999999999999999999999986322110
Q ss_pred CccccccccccccccccccceEEEcCCcccccccCC
Q 000174 1313 PRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348 (1931)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp 1348 (1931)
....++ .++||||+|.+.+|+
T Consensus 97 -------------~~~~~~--~iyL~pElC~ltglt 117 (117)
T cd02845 97 -------------RGGEKE--PIYLIPELCFLTGLT 117 (117)
T ss_pred -------------CCCCCc--EEEEchHHhhhcCCC
Confidence 001112 489999999998874
No 184
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.17 E-value=3.8e-11 Score=126.70 Aligned_cols=72 Identities=25% Similarity=0.340 Sum_probs=64.5
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+++... .|.++.+.||+|.+.|++.|.|++..+ +.|.| +|||+|+|+||+.||..|...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~---g~G~G---~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVV---ATASG---CSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEE---EEEEe---CCHHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999888 799999999999999999999985433 48999 999999999999999998754
No 185
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.14 E-value=7.7e-11 Score=108.62 Aligned_cols=66 Identities=39% Similarity=0.563 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1854 TRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1854 ~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
|++.|+|+|++++| .|.|++....||+|.+.|+|.|.|++. ..+.|.| +|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~---~~~~g~g---~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGE---YTGEGEG---SSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCE---EEEEecc---CCHHHHHHHHHHHHHHhc
Confidence 78999999999999 899999888999999999999999753 2347888 999999999999999987
No 186
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.08 E-value=1.7e-10 Score=123.15 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=61.9
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+++... |..+.+.||+|.+.|++.|.|++..++ +|.| +|||+|||.||+.||..|...
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g---~G~G---~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFK---PAIG---STKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred cCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEE---Eeee---CCHHHHHHHHHHHHHHHHHhc
Confidence 3599999999999998774 666788999999999999999865444 7899 999999999999999999653
No 187
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.04 E-value=2.7e-10 Score=104.98 Aligned_cols=66 Identities=36% Similarity=0.631 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHcCCCCCcceeecccCCCCC-ceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1854 TRQTLNDICLRRNWPMPLYRCVREGGPAHA-KRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1854 ~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~-~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
|++.|+|+|++.++.+|.|. +...||+|. +.|+++|.|++..++ .|.| +|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~i~~~~~~---~g~g---~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYY-IEEEGPSHHRPRFICTVYIDGKEYG---EGEG---SSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEE-EEEESSSSSSEEEEEEEEETTEEEE---EEEE---SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEE-EEEeCCCCCCceEEEEEEECCEEEe---Eecc---CCHHHHHHHHHHHHHHhC
Confidence 78999999999999888555 545555554 899999999644333 8899 999999999999999987
No 188
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.04 E-value=1.1e-09 Score=112.57 Aligned_cols=132 Identities=21% Similarity=0.331 Sum_probs=81.8
Q ss_pred CEEEEeCCCchHHHHHHH-HHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 319 NTIAFLETGAGKTLIAVL-LIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall-~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
-.+|-+.+|+|||.-.+- .+++.+. .+.++|||+|||+++....+.++. ..+..-..... .
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~------~~~rvLvL~PTRvva~em~~aL~~---~~~~~~t~~~~---------~ 67 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIK------RRLRVLVLAPTRVVAEEMYEALKG---LPVRFHTNARM---------R 67 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHH------TT--EEEEESSHHHHHHHHHHTTT---SSEEEESTTSS----------
T ss_pred eeEEecCCCCCCcccccHHHHHHHHH------ccCeEEEecccHHHHHHHHHHHhc---CCcccCceeee---------c
Confidence 357889999999986554 5555555 367899999999999877777763 33332221111 0
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
....+.-|-|+|++.+...+.+ ...+.++++||+||||-. .+..-..+-++.........+++.|||||.-
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~---Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT---DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT-----SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC---CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 1235667899999999887766 556789999999999986 2433333333333333344679999999873
No 189
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=6.7e-08 Score=124.53 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc-
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV- 781 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~- 781 (1931)
..|..++++.+.+. +..+..+||.|.+....+.|..+|.. .+++..++.. . +.+++.-+=. +.|..
T Consensus 409 ~~K~~Aii~ei~~~-~~~gqPVLVgT~SIe~SE~ls~~L~~----~gi~h~vLNA-----k--~~e~EA~IIa-~AG~~G 475 (925)
T PRK12903 409 HAKWKAVVKEVKRV-HKKGQPILIGTAQVEDSETLHELLLE----ANIPHTVLNA-----K--QNAREAEIIA-KAGQKG 475 (925)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH----CCCCceeecc-----c--chhhHHHHHH-hCCCCC
Confidence 46888888877665 35677899999999999999999998 6788888876 2 2333333322 56644
Q ss_pred eEEEEecccccCCCCCCCC--------EEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 782 TLLVATSVAEEGLDIRQCN--------VVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~--------lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
.|-|||++|+||-||.--. +||.-..|.|.+-.-|.+|||||.|..
T Consensus 476 aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDp 529 (925)
T PRK12903 476 AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDV 529 (925)
T ss_pred eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCC
Confidence 5999999999999998644 899999999999999999999999866
No 190
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.96 E-value=4.7e-09 Score=124.57 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=84.8
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCC-C-CCc--eeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPS-L-SFV--KSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~-l-~~~--~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlD 795 (1931)
.+.|+|-||..|..++.|....+++-. . +.+ .+..+-| +-..++|.++-.+.-.|+..-+|||+++|-|||
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRG-----GY~A~DRRKIE~~~F~G~L~giIaTNALELGID 598 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRG-----GYIAEDRRKIESDLFGGKLCGIIATNALELGID 598 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC-----ccchhhHHHHHHHhhCCeeeEEEecchhhhccc
Confidence 368999999999999888766655310 0 111 1233445 778889999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 796 IRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 796 ip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|...+.|+....|.+...+-|..|||||.+..
T Consensus 599 IG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 599 IGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred cccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 99999999999999999999999999997765
No 191
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=98.92 E-value=5.3e-10 Score=118.41 Aligned_cols=106 Identities=30% Similarity=0.543 Sum_probs=87.5
Q ss_pred ccccCCcEEEcccCC--CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccc
Q 000174 1232 AGDLEGRIVTAAHSG--KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKN 1309 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~--~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n 1309 (1931)
.+.|.|..|.+.|.+ +.|.|.+|.++.+|.+.|+...| .+.|+++||+++||++|.+++||||.++.....
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g-----~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~~-- 98 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDG-----KEITVAEYFKEKYNIRLKYPDLPLLNVKSKKKK-- 98 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTS-----EEEEHHHHHHHTCT---SSTTSEEEEECSTTTT--
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCC-----ceEEhHHHHHhhhhcccccCCCCeEEeccCCCC--
Confidence 456899999999998 89999999999999999987755 689999999999999999999999998642221
Q ss_pred cCCCccccccccccccccccccceEEEcCCcccccccCChHHHHHhhchhhHHHHHHH
Q 000174 1310 LLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQRLPSIMRRVES 1367 (1931)
Q Consensus 1310 ~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~~~~lPsi~~rl~~ 1367 (1931)
..++||||+|.+.+.+...|.....+|++|+|.+.
T Consensus 99 -----------------------~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 99 -----------------------QPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp -----------------------TCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHS
T ss_pred -----------------------ceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHh
Confidence 13689999999999999999999999999999864
No 192
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.91 E-value=2.7e-07 Score=124.62 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=57.9
Q ss_pred cCCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 298 KMPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.....++|+.|.+++..+.. +.+++-+|||+|||+.|++|+...... .+.+++|.++|+.|..|..++..
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-----~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-----EGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-----cCCcEEEECCCHHHHHHHHHhhc
Confidence 35678999999999887654 449999999999999999998877654 24779999999999999776553
No 193
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.91 E-value=8.9e-07 Score=118.52 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh----cCCc
Q 000174 706 VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR----DGRV 781 (1931)
Q Consensus 706 v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr----~G~~ 781 (1931)
...+.+.|..... ...+++||..+....+.++..|... .+ ....+.| . ..+.+++++|+ .|+-
T Consensus 520 ~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~---~~-~~ll~Q~-----~---~~~~~ll~~f~~~~~~~~~ 586 (697)
T PRK11747 520 TAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRD---LR-LMLLVQG-----D---QPRQRLLEKHKKRVDEGEG 586 (697)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHh---cC-CcEEEeC-----C---chHHHHHHHHHHHhccCCC
Confidence 3455555555433 3445899999999999999888742 12 2334455 2 23567887776 4677
Q ss_pred eEEEEecccccCCCCCC--CCEEEEcCCCC
Q 000174 782 TLLVATSVAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~--~~lVI~fD~p~ 809 (1931)
.||++|....||||+|+ |.+||..-+|.
T Consensus 587 ~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 587 SVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred eEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 89999999999999998 88898877663
No 194
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.89 E-value=1.2e-08 Score=131.64 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=89.9
Q ss_pred HHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc------C
Q 000174 308 QLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT------G 376 (1931)
Q Consensus 308 Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~------~ 376 (1931)
|.+++..+.+ +.+++.++||+|||++|++|+...+.. ..+.++||++||++|+.|+.+.+..+. +
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~----~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~ 77 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE----RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGP 77 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh----ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCC
Confidence 6666666543 568899999999999999998776542 235789999999999999998877543 3
Q ss_pred CcEEEEeCCCcc-----------------------------------------------------cc-------------
Q 000174 377 YVVGHYCGEMGQ-----------------------------------------------------DF------------- 390 (1931)
Q Consensus 377 l~v~~~~G~~~~-----------------------------------------------------~~------------- 390 (1931)
+++..+.|..+. +.
T Consensus 78 i~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~ 157 (636)
T TIGR03117 78 VQAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDV 157 (636)
T ss_pred eeEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhh
Confidence 444444333210 00
Q ss_pred c----------chHHHHhh---cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 391 W----------DAQRWQRE---FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 391 ~----------~~~~w~~~---~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+ .....++. ...++|||+++..|+..+..+.-.+...+.||||||||+.+
T Consensus 158 ~~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 158 TLAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred hccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 0 00011111 36779999999999987755433456689999999999974
No 195
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=1.4e-07 Score=111.32 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=97.1
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+-+++......+.++.+-+..+.+ +-++++++||||||...--...+..... ...|..--|.+.-+.+.+....
T Consensus 38 ~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-----~~~v~CTQprrvaamsva~RVa 112 (699)
T KOG0925|consen 38 DILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-----LTGVACTQPRRVAAMSVAQRVA 112 (699)
T ss_pred HHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-----ccceeecCchHHHHHHHHHHHH
Confidence 344444455566666666666666 6678999999999865433333322211 1447778899999999888888
Q ss_pred HHcCCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCccc-CCCcHHHHHHH
Q 000174 373 EQTGYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAV-KKHPYSLVMSE 450 (1931)
Q Consensus 373 ~~~~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~-~~~~~~~im~~ 450 (1931)
.-+++..+.-.|-.-. +..... +.-.-.||-+.|+...... --+.++++||+||||.-. ......-.+++
T Consensus 113 dEMDv~lG~EVGysIr-------fEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERtlATDiLmGllk~ 184 (699)
T KOG0925|consen 113 DEMDVTLGEEVGYSIR-------FEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERTLATDILMGLLKE 184 (699)
T ss_pred HHhccccchhcccccc-------ccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhhHHHHHHHHHHHH
Confidence 7776665554443210 000000 0111256666666544332 247899999999999643 22233344555
Q ss_pred HHhhcCCCCCcEEEEEeecCC
Q 000174 451 FYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 451 ~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.....+ .-+++.||||..
T Consensus 185 v~~~rp---dLk~vvmSatl~ 202 (699)
T KOG0925|consen 185 VVRNRP---DLKLVVMSATLD 202 (699)
T ss_pred HHhhCC---CceEEEeecccc
Confidence 554433 368999999964
No 196
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.80 E-value=1.2e-06 Score=115.43 Aligned_cols=171 Identities=16% Similarity=0.147 Sum_probs=102.8
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cC--EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KN--TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n--~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
+.+.+..-..-+.+|-.|+..+.. .. ++-.+.||+|||++=.-++..+.. ...+.|..|-.-.|.|.
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd----~~~g~RfsiALGLRTLT 474 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRD----DKQGARFAIALGLRSLT 474 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCC----CCCCceEEEEcccccee
Confidence 444444445568899999999865 12 456799999999987766654433 34455888888899999
Q ss_pred HHHHHHHHHHcCCc---EEEEeCCCcc----------------------cc------------cchH-------HHH---
Q 000174 365 YQQAEVIREQTGYV---VGHYCGEMGQ----------------------DF------------WDAQ-------RWQ--- 397 (1931)
Q Consensus 365 ~Q~~~~l~~~~~l~---v~~~~G~~~~----------------------~~------------~~~~-------~w~--- 397 (1931)
-|.-+++++.+++. ..++.|+..+ .. |... .|.
T Consensus 475 LQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~ 554 (1110)
T TIGR02562 475 LQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLD 554 (1110)
T ss_pred ccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccC
Confidence 99999998877543 4444443210 00 0000 010
Q ss_pred ---hhcCCccEEEEcHHHHHHHHh--c-ccc--cccc--eeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEe
Q 000174 398 ---REFDTKQVLVMTAQILLNILR--H-SII--KMEA--INLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467 (1931)
Q Consensus 398 ---~~~~~~~IlV~Tpq~L~d~L~--~-~~l--~l~~--i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLT 467 (1931)
+.+-...|+|||+..++-... + +.. .+-. =+.|||||+|-.-.. .+.. +..+++-.. .-..++++||
T Consensus 555 ~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~-L~rlL~w~~-~lG~~VlLmS 631 (1110)
T TIGR02562 555 DKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPA-LLRLVQLAG-LLGSRVLLSS 631 (1110)
T ss_pred hhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHH-HHHHHHHHH-HcCCCEEEEe
Confidence 011146899999988886652 2 111 1112 248999999988431 2222 333333211 1235699999
Q ss_pred ecCC
Q 000174 468 ASPV 471 (1931)
Q Consensus 468 ATP~ 471 (1931)
||..
T Consensus 632 ATLP 635 (1110)
T TIGR02562 632 ATLP 635 (1110)
T ss_pred CCCC
Confidence 9954
No 197
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=98.76 E-value=2.2e-08 Score=106.12 Aligned_cols=67 Identities=30% Similarity=0.487 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
..|||+.||||||+++..+.|++.. .| +.|++.|+|+|..+++|.|.|||+|+++||+.||..|...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 5799999999999988777998654 35 5899999999999999999999999999999999998653
No 198
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.76 E-value=8.8e-07 Score=115.39 Aligned_cols=134 Identities=20% Similarity=0.103 Sum_probs=94.2
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE- 373 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~- 373 (1931)
+....-...|++.|.-+.- ++.++-|+.+.||-|||+++.+|+.-... .+..|-||+++..||.+-++.+..
T Consensus 68 a~~R~lG~r~ydvQlig~l-~L~~G~IaEm~TGEGKTL~a~l~ayl~aL------~G~~VhVvT~NdyLA~RD~e~m~pv 140 (870)
T CHL00122 68 ASFRTLGLRHFDVQLIGGL-VLNDGKIAEMKTGEGKTLVATLPAYLNAL------TGKGVHIVTVNDYLAKRDQEWMGQI 140 (870)
T ss_pred HHHHHhCCCCCchHhhhhH-hhcCCccccccCCCCchHHHHHHHHHHHh------cCCceEEEeCCHHHHHHHHHHHHHH
Confidence 3333444668888887642 34578899999999999999998742222 245699999999999886666654
Q ss_pred --HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHH-----HHHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 374 --QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQI-----LLNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 374 --~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~-----L~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
++|+.|+++.+++.... ++..-.++|+.+|..- |.|.+.. .......+.+.|+||+|.++=+
T Consensus 141 y~~LGLsvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLID 211 (870)
T CHL00122 141 YRFLGLTVGLIQEGMSSEE------RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILID 211 (870)
T ss_pred HHHcCCceeeeCCCCChHH------HHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheec
Confidence 67999999988765422 1222468999999864 3443321 1123466889999999998743
No 199
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.1e-08 Score=123.82 Aligned_cols=100 Identities=25% Similarity=0.449 Sum_probs=80.6
Q ss_pred ccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccC
Q 000174 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLL 1311 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l 1311 (1931)
...+.|.||.|.||++.|.|++|+|+.+|.|.|...+| ..||.+||+++|+++|.+.+||+|..+.-.++.
T Consensus 281 ~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dg------eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~--- 351 (845)
T KOG1042|consen 281 NKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDG------EISFVEYYKKQYNIEITDLNQPLLISEPKDKRP--- 351 (845)
T ss_pred HHHhcceEEEEecCCceeeeeccccCcCccceeeecCc------eeeHhHHHHHhcCeEEeeCCcceEeccCcccCC---
Confidence 34678999999999999999999999999999987764 679999999999999999999999965322211
Q ss_pred CCccccccccccccccccccceEEEcCCcccccccCChHHHHHhh
Q 000174 1312 SPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRGAQ 1356 (1931)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~~~ 1356 (1931)
..... -..+|+||+|++.++...|-.-..
T Consensus 352 --------------~g~~~--q~~~lIPELc~~TGLtd~mr~dF~ 380 (845)
T KOG1042|consen 352 --------------KGEPP--QLAMLIPELCFLTGLTDEMRSDFQ 380 (845)
T ss_pred --------------CCCCc--cceeeehhhhhccCCcHHHHhhHH
Confidence 00111 146899999999999988755444
No 200
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.71 E-value=9.6e-08 Score=114.39 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+|||.|.+.+..+.. .++|+.+|||+|||+++++++...+..........+++++++|..+..|...++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3569999997777654 779999999999999999998766553211111237999999999988877777654
No 201
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.71 E-value=9.6e-08 Score=114.39 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+|||.|.+.+..+.. .++|+.+|||+|||+++++++...+..........+++++++|..+..|...++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3569999997777654 779999999999999999998766553211111237999999999988877777654
No 202
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.71 E-value=2.3e-06 Score=111.21 Aligned_cols=130 Identities=19% Similarity=0.114 Sum_probs=94.3
Q ss_pred CCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH---HHHHHc
Q 000174 299 MPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE---VIREQT 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~---~l~~~~ 375 (1931)
.-...|++.|..+-- ++.+.-|+.+.||-|||+++.+|+.-... .++.|-||++.--||..=++ .+-+++
T Consensus 81 ~lG~r~ydVQliGgl-~Lh~G~IAEM~TGEGKTL~atlpaylnAL------~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 81 VLGMRHFDVQLIGGM-VLHEGQIAEMKTGEGKTLVATLPSYLNAL------TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred HhCCCcchhHHHhhh-hhcCCceeeecCCCChhHHHHHHHHHHhh------cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 344667777766542 34578899999999999999998754332 24559999999999977444 455578
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-----HHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-----LNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-----~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
|+.|+++.+++.... ++..-.++|+.+|...| .|.+.. +......+++.|+||+|.++=+
T Consensus 154 GLtvg~i~~~~~~~e------rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILID 220 (939)
T PRK12902 154 GLSVGLIQQDMSPEE------RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILID 220 (939)
T ss_pred CCeEEEECCCCChHH------HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeec
Confidence 999999988765421 22335899999999887 555543 2234577899999999999743
No 203
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.68 E-value=2.7e-06 Score=116.61 Aligned_cols=140 Identities=16% Similarity=0.210 Sum_probs=97.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
+.+|+=-||||||+..+..+..++.. ...+.|+|||-++.|-.|..+++..+.......- ... +.+...+
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A~~l~~~----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~-----s~~~Lk~ 344 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLARLLLEL----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAE-----STSELKE 344 (962)
T ss_pred ceEEEeecCCchHHHHHHHHHHHHhc----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-ccc-----CHHHHHH
Confidence 58999999999999998887766664 4567899999999999999999998643221111 111 2233334
Q ss_pred hcC--CccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCC
Q 000174 399 EFD--TKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 399 ~~~--~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~ 474 (1931)
.+. ...|+|+|-|.|-..+.... ..-.+--++|+|||||.-.. -....|+..+.. ...+|+|+||+...
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~~~~~~~~------a~~~gFTGTPi~~~ 417 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKLLKKALKK------AIFIGFTGTPIFKE 417 (962)
T ss_pred HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHHHHHHhcc------ceEEEeeCCccccc
Confidence 443 34899999999998876541 12233348999999998652 333444443332 56899999999755
Q ss_pred C
Q 000174 475 G 475 (1931)
Q Consensus 475 ~ 475 (1931)
.
T Consensus 418 d 418 (962)
T COG0610 418 D 418 (962)
T ss_pred c
Confidence 4
No 204
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=98.67 E-value=6.4e-08 Score=103.70 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||++.||||||+++....|.+...| +.|++.|.|+|..+++|.|.|||+|++.||+.||..|...
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNY 178 (183)
T ss_pred cCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhc
Confidence 569999999999998877755544455 4799999999999999999999999999999999999653
No 205
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=98.66 E-value=7.7e-08 Score=88.56 Aligned_cols=61 Identities=34% Similarity=0.373 Sum_probs=55.1
Q ss_pred ChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1767 PVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1767 P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
|++.|+|+|++.+..+.|+... .| +.|+|.|.++|..+++|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 7899999999998888998764 33 3799999999999999999999999999999999876
No 206
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.66 E-value=1.3e-06 Score=113.61 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=106.9
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH----HHHHHHHcCC
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ----AEVIREQTGY 377 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~----~~~l~~~~~l 377 (1931)
..++|.++++.+.+ .++++++++|||||+++-+++.+ +....+++.++|.-+.+.-+ ...|...+|+
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~ 1216 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGL 1216 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-------CccceEEEEecchHHHHHHHHHHHHHhhccccCc
Confidence 37788888888877 78999999999999999998764 23467899999988776554 4455555689
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc--------HHHHHH
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP--------YSLVMS 449 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~--------~~~im~ 449 (1931)
++..+.|+...+. +++...+|+|+||+.+-. ++ ....+++.|.||.|.+.+.++ .+.+..
T Consensus 1217 ~~~~l~ge~s~~l-------kl~~~~~vii~tpe~~d~-lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1217 RIVKLTGETSLDL-------KLLQKGQVIISTPEQWDL-LQ----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred eEEecCCccccch-------HHhhhcceEEechhHHHH-Hh----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 9999999877653 344678999999999853 43 578899999999999885321 122222
Q ss_pred HHHhhcCCCCCcEEEEEeecCCC
Q 000174 450 EFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 450 ~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.+. +..|+++||-+..+
T Consensus 1285 q~~------k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1285 QLE------KKIRVVALSSSLAN 1301 (1674)
T ss_pred HHH------hheeEEEeehhhcc
Confidence 222 23678888877654
No 207
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.65 E-value=5e-07 Score=108.90 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=77.5
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc--CCceEEEEecccccCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD--GRVTLLVATSVAEEGLDIR 797 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~--G~~~vLVaTdVaeeGlDip 797 (1931)
++.+++-|... ..-.+...+.+. ...++++|.| +++.+.|.+--..|++ ++++||||||+++.|+|+
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~---g~~k~aVIYG-----sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL- 425 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKA---GNHKCAVIYG-----SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL- 425 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHh---cCcceEEEec-----CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-
Confidence 45566666543 334444555542 3456999999 9999999888899996 999999999999999999
Q ss_pred CCCEEEEcCCC---------CCHHHHHHhhccCCCCCCc
Q 000174 798 QCNVVIRFDLA---------KTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 798 ~~~lVI~fD~p---------~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++.||.|++- -+..+..|-.|||||.|++
T Consensus 426 ~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 426 NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 78999998875 4677889999999999988
No 208
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=98.61 E-value=1.4e-07 Score=87.08 Aligned_cols=62 Identities=35% Similarity=0.366 Sum_probs=54.0
Q ss_pred CChHHHHHHHHhh-cCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1766 HPVRELQERCQQQ-AEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~-~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
||++.|+|+|+++ ...+.|+.. ..| +.|+|.|.++|..+++|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6999999999998 446799873 333 4799999999999999999999999999999999865
No 209
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.57 E-value=2.1e-08 Score=127.96 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh---c
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR---D 778 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr---~ 778 (1931)
.+.|+..|...+++. +..++|++||.+...+.+.|..++.. .+ ....+.| ..+...|+.++++|+ +
T Consensus 613 ~~~k~~~l~~~~~~l-~~~ghrvl~~~q~~~~ldlled~~~~----~~-~~~r~dG-----~~~~~~rq~ai~~~n~~~~ 681 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKL-KSSGHRVLIFSQMIHMLDLLEDYLTY----EG-KYERIDG-----PITGPERQAAIDRFNAPGS 681 (696)
T ss_pred HHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHhHHHHhc----cC-cceeccC-----CccchhhhhhccccCCCCc
Confidence 367888888888776 67899999999999999999999987 55 8889999 778889999999999 3
Q ss_pred CCceEEEEecccccC
Q 000174 779 GRVTLLVATSVAEEG 793 (1931)
Q Consensus 779 G~~~vLVaTdVaeeG 793 (1931)
....+|.+|.+++-|
T Consensus 682 ~~~cfllstra~g~g 696 (696)
T KOG0383|consen 682 NQFCFLLSTRAGGLG 696 (696)
T ss_pred cceEEEeecccccCC
Confidence 455699999988766
No 210
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=98.55 E-value=2.9e-07 Score=84.79 Aligned_cols=61 Identities=34% Similarity=0.446 Sum_probs=53.2
Q ss_pred ChHHHHHHHHhhcCCceeEEe-ccC-----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 000174 1767 PVRELQERCQQQAEGLEYKAS-RSG-----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVL 1827 (1931)
Q Consensus 1767 P~~~L~e~~~~~~~~~~y~~~-~~g-----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 1827 (1931)
|++.|+|+|++.+..+.|... ..+ +.|+|+|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 789999999999988866533 222 3799999999999999999999999999999999986
No 211
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.42 E-value=5.4e-07 Score=105.89 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=100.0
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEeccC---CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc--
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASRSG---NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE-- 1837 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~~g---~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~-- 1837 (1931)
-+.-+..|+|++|+..+. +.|++.... ..|...|.+++..+|+|.|.|||.||..||+.+|.+|.-.-......
T Consensus 374 gks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~ 453 (650)
T KOG4334|consen 374 GKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVC 453 (650)
T ss_pred CceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccc
Confidence 345678999999987665 488764332 36999999999999999999999999999999999996432111110
Q ss_pred --cCCcCCcccC------CCCccchHHHHHHHHHHcCCCCCcceeecc------------------cCCCCCceeEEEEE
Q 000174 1838 --KGDENGKKRK------NGTQTFTRQTLNDICLRRNWPMPLYRCVRE------------------GGPAHAKRFTYAVR 1891 (1931)
Q Consensus 1838 --~~~~~~~~~~------~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~------------------~Gp~h~~~F~~~~~ 1891 (1931)
+..+.+..+. .-...+ ..+.|+|.+...+.| |.++.+ .|-....+|++.|-
T Consensus 454 d~k~~~~~k~q~~le~F~~I~Ied--prv~e~ctk~~~psP-y~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~G 530 (650)
T KOG4334|consen 454 DGKVEEDGKQQGFLELFKKIKIED--PRVVEMCTKCAIPSP-YNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMILG 530 (650)
T ss_pred cccccccccchhHHHHhhcccccC--chHHHHhhhcCCCCH-HHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeeec
Confidence 0001111000 000122 245677777777777 654432 23344566777664
Q ss_pred EEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1892 VNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1892 v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
-. +.++.. ++|+++||.|.+..|+.|+
T Consensus 531 kh------t~~~~c---knkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 531 KH------TEEAEC---KNKRQGKQLASQRILQKLH 557 (650)
T ss_pred cc------eeeeee---echhHHHHHHHHHHHHHhC
Confidence 32 335555 7799999999999999875
No 212
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.35 E-value=1.9e-05 Score=101.96 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=85.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
.+|-+|+|||||.+.+-++.+.+. .+..++|+|+..+.|+.+.+..++... |+. .+....... .
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~-----~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~~------i- 117 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK-----NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDYI------I- 117 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc-----CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeecccccc------c-
Confidence 588999999999988777776543 346789999999999999999998632 332 222111100 0
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH-------HhhcCCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF-------YHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~-------~~~~~~~~~p~iLgLTATP 470 (1931)
.-...+-+++....|..... -.+.++++||+||+-..++ |-|...|+.. .... ...++++.|-|+.
T Consensus 118 -~~~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~-qL~S~Tm~~~~~v~~~L~~lI--~~ak~VI~~DA~l 190 (824)
T PF02399_consen 118 -DGRPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLN-QLFSPTMRQREEVDNLLKELI--RNAKTVIVMDADL 190 (824)
T ss_pred -cccccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHH-HHhHHHHhhHHHHHHHHHHHH--HhCCeEEEecCCC
Confidence 00134666777777764432 2366799999999987776 3454444322 1211 1248899999986
Q ss_pred C
Q 000174 471 V 471 (1931)
Q Consensus 471 ~ 471 (1931)
.
T Consensus 191 n 191 (824)
T PF02399_consen 191 N 191 (824)
T ss_pred C
Confidence 5
No 213
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=98.32 E-value=1.1e-06 Score=108.34 Aligned_cols=120 Identities=29% Similarity=0.285 Sum_probs=90.8
Q ss_pred CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhccCCcC-----C------cccCCCCccchHHHHH
Q 000174 1791 NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGDEN-----G------KKRKNGTQTFTRQTLN 1859 (1931)
Q Consensus 1791 ~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~-----~------~~~~~~~~~n~~~~L~ 1859 (1931)
|.|.+.|.|+|...- ||.|+.+||+.|++.+.............+. . .........||++.|+
T Consensus 24 p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npv~ll~ 97 (542)
T KOG2777|consen 24 PLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAFLSLGKEGKNPVSLLH 97 (542)
T ss_pred CcccceEEecccccc------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHHHhhhhccCCchHHHH
Confidence 478999999888743 8999999999999999765443221110000 0 0001112579999999
Q ss_pred HHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1860 DICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1860 e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
|+++ -+.|.++.+.||.|.+.|.|.|.|++.. ++|.| .|||+||+.||..||+.|.+
T Consensus 98 e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~----~~~~~---~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 98 ELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRW----FEGGG---RSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred HHhc-----ccceeeeccCCCCCCceEEEEEEECCEE----ccCCC---cchHHHHHHHHHHHHHHHHh
Confidence 9988 6779999999999999999999997553 33447 99999999999999999875
No 214
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.26 E-value=5.2e-06 Score=110.21 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=85.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-----HHc-----C--CcEEEEeCCC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-----EQT-----G--YVVGHYCGEM 386 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-----~~~-----~--l~v~~~~G~~ 386 (1931)
|+.+.|+||+|||.+|+-.|.++.... +..++||+||+.+......+.+. .++ + +...++.+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~----~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKY----GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHc----CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 678999999999999999998887653 45779999999999888776655 233 1 3344454432
Q ss_pred cccccc---hHHHHhhc-------CCccEEEEcHHHHHHHHh----------ccc-cccccee----EEEEeCCCcccCC
Q 000174 387 GQDFWD---AQRWQREF-------DTKQVLVMTAQILLNILR----------HSI-IKMEAIN----LLILDECHHAVKK 441 (1931)
Q Consensus 387 ~~~~~~---~~~w~~~~-------~~~~IlV~Tpq~L~d~L~----------~~~-l~l~~i~----lLV~DEaH~~~~~ 441 (1931)
+...-+ ....+... ...+|+|+|.|.|..... .+. .++..+. .||+||.||+...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 100000 11111111 146899999999975321 111 2222222 8999999999542
Q ss_pred -CcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 442 -HPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 442 -~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.++. .+....| --+|..|||-.
T Consensus 217 ~k~~~----~i~~lnp----l~~lrysAT~~ 239 (986)
T PRK15483 217 NKFYQ----AIEALKP----QMIIRFGATFP 239 (986)
T ss_pred hHHHH----HHHhcCc----ccEEEEeeecC
Confidence 1332 2222221 23688999954
No 215
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.17 E-value=4.1e-05 Score=100.85 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHH-HHHHHhhcCC
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQ-ETIAKFRDGR 780 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~-~~l~~Fr~G~ 780 (1931)
...|..++++.+.+. +..+..+||-+.++...+.|.++|.. .+++..++.. . +.+++ +++. +.|.
T Consensus 610 ~~eK~~Aii~ei~~~-~~~GrPVLVGT~SVe~SE~lS~~L~~----~gI~H~VLNA-----K--~h~~EAeIVA--~AG~ 675 (1112)
T PRK12901 610 KREKYNAVIEEITEL-SEAGRPVLVGTTSVEISELLSRMLKM----RKIPHNVLNA-----K--LHQKEAEIVA--EAGQ 675 (1112)
T ss_pred HHHHHHHHHHHHHHH-HHCCCCEEEEeCcHHHHHHHHHHHHH----cCCcHHHhhc-----c--chhhHHHHHH--hcCC
Confidence 346888888877765 45678899999999999999999998 6777666655 2 22333 2332 3444
Q ss_pred c-eEEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 781 V-TLLVATSVAEEGLDIR--------QCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 781 ~-~vLVaTdVaeeGlDip--------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
. .|-|||++|+||-||. +==+||--..+.|.+-.-|-+|||||.|..
T Consensus 676 ~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 676 PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCC
Confidence 3 4899999999999998 233788889999999999999999998865
No 216
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=98.13 E-value=3.3e-06 Score=86.51 Aligned_cols=83 Identities=29% Similarity=0.540 Sum_probs=64.2
Q ss_pred ccccCCcEEEcccC--CCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccc
Q 000174 1232 AGDLEGRIVTAAHS--GKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKN 1309 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~--~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n 1309 (1931)
.+.+.|..|.+.|+ ++.|.|.++.+..++.. |+...| ...|+++||+++||+.+.+++||+|.+...++
T Consensus 30 ~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~-----~~isv~dYf~~kY~~~l~~p~~Pll~~~~~~~--- 100 (115)
T cd02825 30 TKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDG-----KEITFADYFKERYNLTLTDLNQPLLIVKFSSK--- 100 (115)
T ss_pred HHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCC-----CEEEHHHHHHHHcCCcccCCCCCEEEecCccc---
Confidence 34578999999998 57899999988555554 765544 47899999999999999999999999764221
Q ss_pred cCCCccccccccccccccccccceEEEcCCccccc
Q 000174 1310 LLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFI 1344 (1931)
Q Consensus 1310 ~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v 1344 (1931)
+...++||||+|.+
T Consensus 101 ---------------------~~~~~~lp~Elc~i 114 (115)
T cd02825 101 ---------------------KSYSILLPPELCVI 114 (115)
T ss_pred ---------------------CCCceEEchheEEe
Confidence 00136899999986
No 217
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=4.7e-05 Score=85.79 Aligned_cols=172 Identities=21% Similarity=0.277 Sum_probs=129.7
Q ss_pred HhhhcC-CCCChhHHHHHhccccCC-------------------CCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchh
Q 000174 1374 LKDKIN-YPVPASKILEALTAASCQ-------------------ETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQL 1433 (1931)
Q Consensus 1374 l~~~l~-~~~~~~~ll~AlT~~s~~-------------------~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~L 1433 (1931)
+.++|+ ..|..+.++.|||.+|+. ...+|+-|--.|-.|+.+.++.||-++||..+|-.|
T Consensus 68 fg~RL~~~~is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l 147 (333)
T KOG3769|consen 68 FGKRLQSEEISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGL 147 (333)
T ss_pred HHHHhccccccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 334445 456777788888887752 246899999999999999999999999999999999
Q ss_pred hHHHhhhhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCcc
Q 000174 1434 TRMRQQMVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDD 1513 (1931)
Q Consensus 1434 s~~R~~lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1513 (1931)
+.+-+-+++.+.|+.+|..+|+..+++++.|.+. +
T Consensus 148 ~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~-----~---------------------------------------- 182 (333)
T KOG3769|consen 148 HAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV-----G---------------------------------------- 182 (333)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc-----h----------------------------------------
Confidence 9999999999999999999999999999987531 0
Q ss_pred ccccCcccCCCCCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHhhccccCCCCcCCCCCCCCCCCccccchhhHH
Q 000174 1514 DMEDGELEGDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWIGIQVESDPEEVGCPSRPACVPESVLRSVDFH 1593 (1931)
Q Consensus 1514 ~~~~~~~~~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 1593 (1931)
....+++.++++-||+|+.+...|.....+|+..--+..++++..+.. ...| ...+.
T Consensus 183 --------------eisq~ess~~aI~Al~~~~~~ek~~~~v~dFI~~qi~~k~L~~~~m~q----l~~P-----~~~L~ 239 (333)
T KOG3769|consen 183 --------------EISQDESSRRAIGALLGSVGLEKGFNFVRDFINDQILSKDLDPREMWQ----LQWP-----RRLLS 239 (333)
T ss_pred --------------hhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchHhhcc----ccch-----HHHHH
Confidence 011247899999999999999999888888886544444444333321 0111 12356
Q ss_pred HHHHHcCCCcCCHHHHHHHh
Q 000174 1594 ALEDALKIKFKDRGLLVEAI 1613 (1931)
Q Consensus 1594 ~le~~lgy~F~~~~LL~~Al 1613 (1931)
.+-+..|.+=--..|+.++=
T Consensus 240 ~lckr~~l~epe~Rll~esG 259 (333)
T KOG3769|consen 240 RLCKRRGLKEPESRLLAESG 259 (333)
T ss_pred HHHHHcCCCCchhHHHHHhc
Confidence 66667777766677777763
No 218
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.85 E-value=0.0076 Score=75.04 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEeccc--ccCCCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVA--EEGLDI 796 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVa--eeGlDi 796 (1931)
....++|||+++=-.--.|-.+|++ ..+..+.++- -.+..+-.++-..|.+|+.+||+-|--+ =+=..|
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~----~~~sF~~i~E-----Yts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK----ENISFVQISE-----YTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh----cCCeEEEecc-----cCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 4567899999998888888888886 6788888888 7778888888999999999999999532 234677
Q ss_pred CCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 797 RQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 797 p~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.++..||.|.+|.++.=|-.-+.-...
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~ 395 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDE 395 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcc
Confidence 889999999999999988666544433
No 219
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=6.9e-05 Score=101.51 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=59.8
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.+|..+||.|.+.+..+.+ +++++-+|||+|||++.+.++...... .+...++++.+.|..=..|..+++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~---~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQE---KPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHh---ccccccEEEEcccchHHHHHHHHHHh
Confidence 4566779999999988765 789999999999999999988766543 22346799999999999999999987
No 220
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.75 E-value=9.4e-05 Score=86.43 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHH--hhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICND--LQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~--~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
++.+.|.+|+..++. .. ++|.+|.|+|||.+....+..++.. ......+.++|+++|+..-+.+..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478899999999999 55 8999999999997666666655321 01134567899999999999999998887
No 221
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.67 E-value=0.00029 Score=82.38 Aligned_cols=133 Identities=23% Similarity=0.193 Sum_probs=89.9
Q ss_pred hhhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-
Q 000174 295 AKEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE- 373 (1931)
Q Consensus 295 ~l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~- 373 (1931)
+....-...|++.|..+.-.+ .++-|+.+.||=|||+++.+++.-... .+..|=|++..--|+..=++.+..
T Consensus 69 a~~r~~g~~p~~vQll~~l~L-~~G~laEm~TGEGKTli~~l~a~~~AL------~G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 69 AARRTLGLRPYDVQLLGALAL-HKGRLAEMKTGEGKTLIAALPAALNAL------QGKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp HHHHHTS----HHHHHHHHHH-HTTSEEEESTTSHHHHHHHHHHHHHHT------TSS-EEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHhhhhhc-ccceeEEecCCCCcHHHHHHHHHHHHH------hcCCcEEEeccHHHhhccHHHHHHH
Confidence 344445678999998888555 445599999999999999997754433 256699999999999887766665
Q ss_pred --HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHH-HHHhccc------ccccceeEEEEeCCCcccC
Q 000174 374 --QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILL-NILRHSI------IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 374 --~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~-d~L~~~~------l~l~~i~lLV~DEaH~~~~ 440 (1931)
++|+.|+.+++++.... ++..-.++|+.+|...|. |.|+... .....+.++|+||||.++-
T Consensus 142 y~~LGlsv~~~~~~~~~~~------r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 142 YEFLGLSVGIITSDMSSEE------RREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp HHHTT--EEEEETTTEHHH------HHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred HHHhhhccccCccccCHHH------HHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 56999999999876321 122235789999997765 3444321 1246788999999998873
No 222
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.65 E-value=0.00037 Score=81.42 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+..-|.|++--+.+ ...++.+.||.||..+....|.+...+ .++++|+|..+-.|.....+-
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-----Gr~r~vwvS~s~dL~~Da~RD 110 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-----GRKRAVWVSVSNDLKYDAERD 110 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-----CCCceEEEECChhhhhHHHHH
Confidence 4578999998877642 457999999999986666655544332 345688899999998877777
Q ss_pred HHHHcC--CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc---cccc--------cce-eEEEEeCCC
Q 000174 371 IREQTG--YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS---IIKM--------EAI-NLLILDECH 436 (1931)
Q Consensus 371 l~~~~~--l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~---~l~l--------~~i-~lLV~DEaH 436 (1931)
++..-. +.+..+.. ++... ..-....||++||..|...-..+ .-.+ .++ .+|||||||
T Consensus 111 l~DIG~~~i~v~~l~~------~~~~~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 111 LRDIGADNIPVHPLNK------FKYGD--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred HHHhCCCcccceechh------hccCc--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 776432 22222211 11000 00124569999999998765321 1111 122 399999999
Q ss_pred cccCCCc-------HHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 437 HAVKKHP-------YSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 437 ~~~~~~~-------~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
++.+-.. -......+-...| ..|++-+|||..
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP---~ARvvY~SATga 221 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLP---NARVVYASATGA 221 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCC---CCcEEEeccccc
Confidence 9997422 1112222333332 367999999965
No 223
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.64 E-value=5.4e-05 Score=100.03 Aligned_cols=144 Identities=22% Similarity=0.200 Sum_probs=100.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhh--------h----cCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEe
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQ--------R----QNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYC 383 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~--------~----~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~ 383 (1931)
.+++++.++|+|||..-+........... . ....+.+|||+|. ++..||..+|..+. +++|..|.
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEEe
Confidence 45799999999999887775543321110 0 1123458999996 67799999999987 45777777
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--------------------ccccceeEEEEeCCCcccCCCc
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--------------------IKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--------------------l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
|-.. ..|... ..+..++||++||.+|.+.+.|.. +.+-.|=-|++|||+.+-...+
T Consensus 454 Girk-~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 454 GIRK-TFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred chhh-hcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 7543 333333 455799999999999999886641 1122344699999998877666
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+...|-..+++ -...+.|+||++
T Consensus 530 ~~a~M~~rL~~------in~W~VTGTPiq 552 (1394)
T KOG0298|consen 530 AAAEMVRRLHA------INRWCVTGTPIQ 552 (1394)
T ss_pred HHHHHHHHhhh------hceeeecCCchh
Confidence 66666555443 468999999996
No 224
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=97.50 E-value=0.00021 Score=67.71 Aligned_cols=64 Identities=33% Similarity=0.382 Sum_probs=49.9
Q ss_pred CCChHHHHHHHHhhcCC-ceeEEe-ccCC----eEEEEEEECCEEEE---------Eee-cCCHHHHHHHHHHHHHHHHH
Q 000174 1765 MHPVRELQERCQQQAEG-LEYKAS-RSGN----LATVEVYIDGVQVG---------VAQ-NPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~-~~y~~~-~~g~----~f~v~V~v~g~~~~---------~g~-g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
+||++.|+|+|++++++ +.|++. ..|+ .|++.|.|.+.... -+. ..++++||..||+.||..|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 58999999999999987 499975 3454 69999999876541 112 34578899999999999873
No 225
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.44 E-value=0.00041 Score=85.82 Aligned_cols=138 Identities=15% Similarity=0.134 Sum_probs=101.0
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+...+..+|..-|..|+..++. .=.||++|.|+|||.+...++.+++++ ...+||+.+|+..-+.|.++.|.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh 475 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIH 475 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-----cCCceEEEcccchhHHHHHHHHH
Confidence 456667788999999999999999 557999999999999999888888775 35679999999999999999998
Q ss_pred HHcCCcEEEEeCCCcc---------------------------------------cc-----cchHHHHhhcCCccEEEE
Q 000174 373 EQTGYVVGHYCGEMGQ---------------------------------------DF-----WDAQRWQREFDTKQVLVM 408 (1931)
Q Consensus 373 ~~~~l~v~~~~G~~~~---------------------------------------~~-----~~~~~w~~~~~~~~IlV~ 408 (1931)
+ +|++|.-++..... +. .+...-..++...+|+.|
T Consensus 476 ~-tgLKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIcc 554 (935)
T KOG1802|consen 476 K-TGLKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICC 554 (935)
T ss_pred h-cCceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEE
Confidence 7 56776655332110 00 001112334457889998
Q ss_pred cHHHHHHHHhcccccccceeEEEEeCCCcccCC
Q 000174 409 TAQILLNILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 409 Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
|--..-+. .+.-..+..|++||+-.....
T Consensus 555 Tcv~Agd~----rl~~~kfr~VLiDEaTQatEp 583 (935)
T KOG1802|consen 555 TCVGAGDR----RLSKFKFRTVLIDEATQATEP 583 (935)
T ss_pred ecccccch----hhccccccEEEEecccccCCc
Confidence 87544321 133356789999999998875
No 226
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=97.21 E-value=0.00045 Score=71.00 Aligned_cols=65 Identities=26% Similarity=0.517 Sum_probs=53.5
Q ss_pred ccCCcEEEcccC---CCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEee
Q 000174 1234 DLEGRIVTAAHS---GKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGR 1302 (1931)
Q Consensus 1234 ~l~~~vv~~~~~---~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~ 1302 (1931)
.+.|..|.+.|. ++.|.|.++..+..+...|+...+. .+.|+.+||+++|++.+.++++|++.+.
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~----~~isV~dYf~~~y~~~l~~p~lP~v~~g 98 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGE----KEISVADYFKEKYNIRLKYPNLPCLQVG 98 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCC----cEEEHHHHHHHHcCCcccCCCCCEEEeC
Confidence 456888888886 6889999998887777888755431 3789999999999999999999999964
No 227
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.081 Score=64.97 Aligned_cols=124 Identities=10% Similarity=0.160 Sum_probs=84.0
Q ss_pred HHHHHHHH-HHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 704 PKVQSLIK-ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 704 ~Kv~~Li~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
.++.-.++ ++-.+.......++|++++=-.--.+-..+++ ..+....|+- -.++.+-.++-+-|-.|..+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~----e~i~F~~i~E-----Yssk~~vsRAR~lF~qgr~~ 604 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKK----EEISFVMINE-----YSSKSKVSRARELFFQGRKS 604 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhh----hhcchHHHhh-----hhhHhhhhHHHHHHHhcCce
Confidence 34444433 22233333346689999987777777777776 4555555555 34445555566778999999
Q ss_pred EEEEeccc--ccCCCCCCCCEEEEcCCCCCHHHH---HHhhccCCCCC------CcEEEEEecCC
Q 000174 783 LLVATSVA--EEGLDIRQCNVVIRFDLAKTVLAY---IQSRGRARKPG------SDYILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVa--eeGlDip~~~lVI~fD~p~s~~~y---iQr~GRa~R~G------s~~ivlv~~~~ 836 (1931)
+|+-|--+ =+--+|.+|..||.|.+|.+|.=| +-..+|+.-.| ..+.+|....+
T Consensus 605 vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 605 VLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred EEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 99999643 356789999999999999999877 56667776555 44666666554
No 228
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.15 E-value=0.00083 Score=83.54 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=92.0
Q ss_pred CCCcHHHHHHHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH-----
Q 000174 302 EQARPYQLDVLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ----- 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~----- 374 (1931)
..+.+-|++|+..++. ++ .++.+|+|+|||.+-..+|.+++.+ +.+|||.+||.+-+..+.+.+...
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~------~k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ------KKRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc------CCeEEEEcCchHHHHHHHHHhcccccchh
Confidence 5678899999999988 44 6899999999999999998888774 578999999999988888864310
Q ss_pred -cCCc-------------EEEEeCC--------------------Cccc------cc------chHHH-------HhhcC
Q 000174 375 -TGYV-------------VGHYCGE--------------------MGQD------FW------DAQRW-------QREFD 401 (1931)
Q Consensus 375 -~~l~-------------v~~~~G~--------------------~~~~------~~------~~~~w-------~~~~~ 401 (1931)
.|.+ ...-.++ ...+ .| +++.. ...+.
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 0100 0001110 0000 00 00111 12344
Q ss_pred CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 402 TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 402 ~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+.+|+++|-+.-.+.+. .-..++++|+|||=.++....|-.++
T Consensus 338 n~~VVfaTl~ga~~~~~----~~~~fD~vIIDEaaQamE~~cWipvl 380 (649)
T KOG1803|consen 338 NSRVVFATLGGALDRLL----RKRTFDLVIIDEAAQAMEPQCWIPVL 380 (649)
T ss_pred ccceEEEeccchhhhhh----cccCCCEEEEehhhhhccchhhhHHh
Confidence 78999999887766332 23679999999999998865555554
No 229
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.11 E-value=0.0011 Score=82.35 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=66.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
-+||.+..|||||++++.++..+.. ...+..++++++..+|+......+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~----~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~-------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQN----SEEGKKVLYLCGNHPLRNKLREQLAKKY-------NP-------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhc----cccCCceEEEEecchHHHHHHHHHhhhc-------cc--------------
Confidence 3689999999999999998887621 1245679999999999887777776532 00
Q ss_pred hcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 399 EFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
......+..+..+.+.+.........+++|||||||++..
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1112334455555544432234567899999999999987
No 230
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.021 Score=75.39 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
...|....++.+... +..+..+||-+.+....+.+.++|.+ .+++-..+.. ....|+.-+-.+ .|..
T Consensus 411 ~~~K~~Aiv~~I~~~-~~~gqPvLvgT~sie~SE~ls~~L~~----~~i~h~VLNA-------k~h~~EA~Iia~-AG~~ 477 (822)
T COG0653 411 EEEKFKAIVEDIKER-HEKGQPVLVGTVSIEKSELLSKLLRK----AGIPHNVLNA-------KNHAREAEIIAQ-AGQP 477 (822)
T ss_pred hHHHHHHHHHHHHHH-HhcCCCEEEcCcceecchhHHHHHHh----cCCCceeecc-------ccHHHHHHHHhh-cCCC
Confidence 346788888777765 56678899999999999999999997 5777767755 222444333333 4444
Q ss_pred e-EEEEecccccCCCCCCCC-----------EEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 782 T-LLVATSVAEEGLDIRQCN-----------VVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 782 ~-vLVaTdVaeeGlDip~~~-----------lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
. |=|||++|+||-||.--. +||--....|-.-.-|-+||+||.|-.
T Consensus 478 gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 478 GAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred CccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 3 789999999999997533 345444445555556999999998854
No 231
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.07 E-value=0.0029 Score=84.13 Aligned_cols=66 Identities=20% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..+.+.|.+++..++. ..++|.+|+|+|||.+....+.+++.. +.+||+++||..-|.+..+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 4689999999999987 568999999999998888887776652 34799999999999998888876
No 232
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.02 E-value=0.00018 Score=93.55 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=94.9
Q ss_pred cHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcE
Q 000174 305 RPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVV 379 (1931)
Q Consensus 305 ~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v 379 (1931)
.|.|...+..... .+.++.+|||+|||++|-+.+...+.. .++.++++++|-.+|+.--.+...+.. |+++
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~----~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY----YPGSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc----CCCccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 3455555555444 678999999999999999988766653 456789999999999876555544432 7889
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--ccccccceeEEEEeCCCcccCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--SIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
+.+.|+...+. ......+|+|+||+......+. ..-.+.+++++|+||.|.+..+
T Consensus 1005 ie~tgd~~pd~-------~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1005 IELTGDVTPDV-------KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EeccCccCCCh-------hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 99998876542 2336889999999999876652 3345788999999999998763
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.98 E-value=0.0025 Score=71.73 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
...++.|..++..+++ .-+++.++.|||||+.++..+.+.+.. +.-.+++++-|+++.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~----g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE----GEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT----TS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh----CCCcEEEEEecCCCC
Confidence 4568899999999998 678999999999999999988877763 455778999898754
No 234
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.96 E-value=0.0042 Score=70.41 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=86.5
Q ss_pred CCCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 300 PEEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
...-+|+.|.++...+.+ .|.+..+-||.|||-+.+=.+...+. ++...|.++|| .+|..|..+.++..+
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-----dg~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALA-----DGSRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHc-----CCCcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 346789999999999887 68999999999999765443333332 34466778888 589999999998865
Q ss_pred C----CcEEEE--eCCCcccccchHHHH----hhcCCccEEEEcHHHHHHHHhc-------ccc-----------cccce
Q 000174 376 G----YVVGHY--CGEMGQDFWDAQRWQ----REFDTKQVLVMTAQILLNILRH-------SII-----------KMEAI 427 (1931)
Q Consensus 376 ~----l~v~~~--~G~~~~~~~~~~~w~----~~~~~~~IlV~Tpq~L~d~L~~-------~~l-----------~l~~i 427 (1931)
+ -++..+ .-....+........ .......|+++||+.++...-. +.. .+..-
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~ 173 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEH 173 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 3 333332 333333222222222 2334677999999987754211 110 13334
Q ss_pred eEEEEeCCCcccC
Q 000174 428 NLLILDECHHAVK 440 (1931)
Q Consensus 428 ~lLV~DEaH~~~~ 440 (1931)
.-=|+||+|..+.
T Consensus 174 ~rdilDEsDe~L~ 186 (229)
T PF12340_consen 174 SRDILDESDEILS 186 (229)
T ss_pred CCeEeECchhccC
Confidence 4568999988765
No 235
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=96.87 E-value=0.0059 Score=61.08 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHH
Q 000174 1628 RLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAV 1675 (1931)
Q Consensus 1628 RLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~ 1675 (1931)
-|.|+||||+++.|-.|+...+.. .|..||..-.+.||...-|.+-.
T Consensus 17 aLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~ 63 (132)
T COG1939 17 ALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILK 63 (132)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHH
Confidence 689999999999999999876443 79999999999999988776543
No 236
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.87 E-value=0.0018 Score=73.33 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHhc-c-C-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 303 QARPYQLDVLEQAKK-K-N-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-~-n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
+|++-|.+++..++. . + ++|.++.|+|||.+...+ ...+.. .+.++++++||...+. ++.+.++..+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~-~~~~~~-----~g~~v~~~apT~~Aa~----~L~~~~~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKAL-AEALEA-----AGKRVIGLAPTNKAAK----ELREKTGIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHH-HHHHHH-----TT--EEEEESSHHHHH----HHHHHHTS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHH-HHHHHh-----CCCeEEEECCcHHHHH----HHHHhhCcch
Confidence 478899999999976 2 3 678899999999865443 333332 2477999999965544 4555444443
Q ss_pred E
Q 000174 380 G 380 (1931)
Q Consensus 380 ~ 380 (1931)
.
T Consensus 71 ~ 71 (196)
T PF13604_consen 71 Q 71 (196)
T ss_dssp E
T ss_pred h
Confidence 3
No 237
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.83 E-value=0.0024 Score=70.47 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=57.4
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec--ccccCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS--VAEEGLDIRQ 798 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd--VaeeGlDip~ 798 (1931)
..+++||+++....+.+.+.+.......++ ..+.- ....+.+++++|+.++-.||+|+. ...||||+|+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~--~v~~q-------~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGI--PVFVQ-------GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETS--CEEES-------TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccc--eeeec-------CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 578999999999999999988763210122 22221 234677899999999999999998 9999999997
Q ss_pred --CCEEEEcCCCC
Q 000174 799 --CNVVIRFDLAK 809 (1931)
Q Consensus 799 --~~lVI~fD~p~ 809 (1931)
|..||...+|.
T Consensus 80 ~~~r~vii~glPf 92 (167)
T PF13307_consen 80 DLLRAVIIVGLPF 92 (167)
T ss_dssp ESEEEEEEES---
T ss_pred chhheeeecCCCC
Confidence 88999988885
No 238
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.65 E-value=0.015 Score=74.87 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=75.8
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCC---CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSL---SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIR 797 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l---~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip 797 (1931)
..-++||-.-......|..+|..+..+ ..+...-.|. .....++.++.+....|..++++.|.+++.-|-+-
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hs-----q~~~~eqrkvf~~~p~gv~kii~stniaetsiTid 717 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHS-----QLTSQEQRKVFEPVPEGVTKIILSTNIAETSITID 717 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchh-----hcccHhhhhccCcccccccccccccceeeEeeeec
Confidence 345788888888888888777654322 2344555566 55556667777777789999999999999999998
Q ss_pred CCCEEEEcCCC------------------CCHHHHHHhhccCCCCCCcEEEEE
Q 000174 798 QCNVVIRFDLA------------------KTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 798 ~~~lVI~fD~p------------------~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
++..||.-+.- .+....+||.||++|....+...+
T Consensus 718 d~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~l 770 (1282)
T KOG0921|consen 718 DVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHL 770 (1282)
T ss_pred ceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccc
Confidence 87777643321 245567999999998766554443
No 239
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.60 E-value=0.0063 Score=78.36 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=43.4
Q ss_pred HhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCC
Q 000174 775 KFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARK 823 (1931)
Q Consensus 775 ~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R 823 (1931)
.|.+ ..+++++-.++-||.|=|+|=.++-.....|..+=.|-+||.-|
T Consensus 479 SFd~-plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 479 SFDE-PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred ccCC-cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 4544 47899999999999999999999999999999999999999877
No 240
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.59 E-value=0.0047 Score=65.04 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+-++|.+++|+|||...-..+..+............+.+-+|...-...+...+...++.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 4578999999999998888777665432222222334444444332344445554444322110
Q ss_pred hhcCCccEEEEcHH----HHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQ----ILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq----~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
-.+.. .+.+.+.+. ...+|||||+|++. + ...+..+..... ...-.+.+++||.
T Consensus 69 ---------~~~~~~l~~~~~~~l~~~-----~~~~lviDe~~~l~-~---~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---------RQTSDELRSLLIDALDRR-----RVVLLVIDEADHLF-S---DEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp ---------TS-HHHHHHHHHHHHHHC-----TEEEEEEETTHHHH-T---HHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred ---------cCCHHHHHHHHHHHHHhc-----CCeEEEEeChHhcC-C---HHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 01222 233333332 22799999999984 2 233333322211 2344578888884
No 241
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.57 E-value=0.013 Score=76.03 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=31.9
Q ss_pred CCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i 338 (1931)
..+|++.|...+..++. .|+++-.|||+|||+.-+-..
T Consensus 19 P~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~ 61 (945)
T KOG1132|consen 19 PFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCST 61 (945)
T ss_pred cCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHH
Confidence 36789999999998875 789999999999998766533
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=96.51 E-value=0.0077 Score=56.74 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=43.2
Q ss_pred HHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 311 VLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 311 ai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
++..++. .+ ++|.++.|||||...+-.+.+++.... .+ +.+++|++||+..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~-~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA-DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc-CC-CCeEEEECCCHHHHHHHHHHH
Confidence 4443444 44 556999999999888888877764221 22 678999999999988777776
No 243
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.0027 Score=78.25 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred EeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH----cCCcEEEEeCCCcccccchHHHHh
Q 000174 323 FLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ----TGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 323 ~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~----~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
.|.||||||++...+|++.... +-+..||.|.....+.-...-+..- .=+.-.+..++......+...+..
T Consensus 3 ~matgsgkt~~ma~lil~~y~k-----gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKK-----GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHh-----chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 5789999999999999988774 2345778887655544333222110 001112223333322222222222
Q ss_pred hcCCccEEEEcHHHHHHHHhcc---cccc---ccee-EEEEeCCCccc
Q 000174 399 EFDTKQVLVMTAQILLNILRHS---IIKM---EAIN-LLILDECHHAV 439 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~---~l~l---~~i~-lLV~DEaH~~~ 439 (1931)
.-....|+++|.|.|...+.+. .+.+ .+.. +.+-|||||+-
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 3357889999999999887653 3333 3444 45669999986
No 244
>PLN03202 protein argonaute; Provisional
Probab=96.46 E-value=0.0031 Score=86.85 Aligned_cols=90 Identities=20% Similarity=0.287 Sum_probs=68.8
Q ss_pred ccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCC----CCCCccccHHHHHHhhcCccccCC-CCceEEeecccc
Q 000174 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGY----LGPLEYSSYADYYKQKYGVELIFK-KQPLIRGRGVSY 1306 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~----~~~~~~~t~~~yy~~k~~~~l~~~-~QPLL~~~~~~~ 1306 (1931)
.+.|.|..|.+.|+++.|.|.++.++.+|...|....+- .+...+.|+.+||+++|++.+.++ ++|++.+.+
T Consensus 292 ~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~--- 368 (900)
T PLN03202 292 KRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK--- 368 (900)
T ss_pred HHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC---
Confidence 356889999999999999999999999999888643110 011136899999999999999985 899887321
Q ss_pred ccccCCCccccccccccccccccccceEEEcCCcccccccCC
Q 000174 1307 CKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLP 1348 (1931)
Q Consensus 1307 ~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp 1348 (1931)
..+ .++||||+|.+.+.-
T Consensus 369 ----------------------~~~--~~ylP~ElC~i~~~Q 386 (900)
T PLN03202 369 ----------------------PKR--PTYFPIELCSLVSLQ 386 (900)
T ss_pred ----------------------CCC--CeEEcceeeEccCCc
Confidence 011 268999999998864
No 245
>PRK10536 hypothetical protein; Provisional
Probab=96.35 E-value=0.043 Score=63.58 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=45.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
.++...+..|..++..+.+ ..+++.+++|+|||+.++....+.+.. +.-.++++.=|+++
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~----~~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH----KDVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc----CCeeEEEEeCCCCC
Confidence 4566778899999998877 778899999999999999987765532 23345666666654
No 246
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.70 E-value=0.074 Score=72.08 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
....+++-|++|+..+.. +-++|.+..|+|||.+.-.++.. +.. .++...+++++||-.-+. .+.+.+|.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~-~~~---~~~~~~v~l~ApTg~AA~----~L~e~~g~ 390 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIEL-AEE---LGGLLPVGLAAPTGRAAK----RLGEVTGL 390 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHH-HHH---cCCCceEEEEeCchHHHH----HHHHhcCC
Confidence 346799999999999987 77899999999999876554432 332 122257899999976554 44444443
No 247
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=95.68 E-value=0.024 Score=55.33 Aligned_cols=68 Identities=26% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCC-----CCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1855 RQTLNDICLRRNW-----PMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1855 ~~~L~e~~~~~~~-----~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
++.|+.||++..- ..|.|.+....+ .|.++|++-.. .. ...-.|.++.|||.||+.||-.|..+|.+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~-~p-i~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPIN-SP-IRSIEGPPMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT--S-S--EEEE--SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCC-CC-CCeEEccccccHHHHHHHHHHHHHHHHHHc
Confidence 6889999987543 457787655443 67777776532 12 223566789999999999999999998763
No 248
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.63 E-value=0.045 Score=66.78 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=43.5
Q ss_pred CCCCCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.++...+|-|.+=.-.+++ .++++-+|+|+|||..-+.++.......+ ....+.++-.-|++=++....++
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p--~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP--DEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC--cccceEEEecCcchHHHHHHHHH
Confidence 4566778888776555543 78999999999999988877654433221 12234455444544444333333
No 249
>PRK06526 transposase; Provisional
Probab=95.39 E-value=0.039 Score=65.01 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+++++|+|+|||..+..+..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 89999999999999999888766654
No 250
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.37 E-value=0.064 Score=63.03 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=56.8
Q ss_pred HHHHHhhcCCceEEEEecccccCCCCCCC--------CEEEEcCCCCCHHHHHHhhccCCCCCCc----EEEEEecCChh
Q 000174 771 ETIAKFRDGRVTLLVATSVAEEGLDIRQC--------NVVIRFDLAKTVLAYIQSRGRARKPGSD----YILMIERGNLS 838 (1931)
Q Consensus 771 ~~l~~Fr~G~~~vLVaTdVaeeGlDip~~--------~lVI~fD~p~s~~~yiQr~GRa~R~Gs~----~ivlv~~~~~~ 838 (1931)
...+.|.+|+..|+|-|++++.||-+.+- .+-|...+||+....+|-.||++|.||. |++++. +-..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t-~~~g 130 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT-DLPG 130 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec-CCHH
Confidence 45678999999999999999999999852 2347889999999999999999999986 655543 3333
Q ss_pred HHHHH
Q 000174 839 HATFL 843 (1931)
Q Consensus 839 ~~~~l 843 (1931)
+..+.
T Consensus 131 E~Rfa 135 (278)
T PF13871_consen 131 ERRFA 135 (278)
T ss_pred HHHHH
Confidence 33343
No 251
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.16 Score=63.22 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE-eCC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL-VPK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L-vPT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.++++++||+|||-+..-++.++.... ...+.+|.++ +.| +.-+..|...+.+.+++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~--~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~-------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS--DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA-------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh--ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe--------------
Confidence 4578999999999988877765544321 0122334433 333 333333344444444544322
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.++..+...+.. +.+.++||+|++.+...+...-..+..++..... ..-.+|-|+||-.
T Consensus 239 -----------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~-~~e~~LVlsat~~ 298 (388)
T PRK12723 239 -----------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGR-DAEFHLAVSSTTK 298 (388)
T ss_pred -----------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC-CCeEEEEEcCCCC
Confidence 2244445544443 4678999999999986532122234444443221 1235788999854
No 252
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.24 E-value=0.16 Score=69.13 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=65.3
Q ss_pred CCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 302 EQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
..+++-|++++..++. +-++|.++.|+|||.+.-.++ +.+.. .+.++++++||---+ ..+..-+|+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~-~~~~~-----~g~~V~~~ApTg~Aa----~~L~~~~g~~a 420 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAR-EAWEA-----AGYRVIGAALSGKAA----EGLQAESGIES 420 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHH-HHHHh-----CCCeEEEEeCcHHHH----HHHHhccCCce
Confidence 5689999999999887 457999999999997755543 33332 256799999995443 34444334322
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
. |-..+...+..+...+...++||+|||-.+..
T Consensus 421 ~----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 421 R----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred e----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH
Confidence 2 11222111222333456789999999988754
No 253
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.23 E-value=0.062 Score=70.63 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=88.8
Q ss_pred CCCCCcHHHHHHHHHHhc-c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 300 PEEQARPYQLDVLEQAKK-K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
....|..-|++|+-.++. + -.+|.+-+|+|||-....+|+-++. .+++||+.+=|..-|..+.-.++. +
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~------~gkkVLLtsyThsAVDNILiKL~~---~ 736 (1100)
T KOG1805|consen 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA------LGKKVLLTSYTHSAVDNILIKLKG---F 736 (1100)
T ss_pred HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH------cCCeEEEEehhhHHHHHHHHHHhc---c
Confidence 456899999999999998 4 4688899999999888888776665 367799999998777766665554 2
Q ss_pred cEEEEeCCCc---------------ccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 378 VVGHYCGEMG---------------QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 378 ~v~~~~G~~~---------------~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+.++.=|+. .....-+.....++...||.+|---+.+.| +...++++.|+|||-.+.-
T Consensus 737 ~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 737 GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhccccCEEEEcccccccc
Confidence 2222211110 000112334456678899999976554333 4567799999999988765
No 254
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.16 E-value=0.095 Score=69.17 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..++|++|+..++. +-++|.+++|+|||.+...++..+.... ..+..++++++||.--+....+.+.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~--~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA--DGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCCcEEEEECCcHHHHHHHHHHHH
Confidence 35899999999988 6789999999999987666555443321 1234579999999766555554443
No 255
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.12 E-value=0.12 Score=68.19 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 306 PYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 306 ~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
+.|++++..++. +-++|.++.|+|||.+...++..+..... ...+.++++.+||---+....+.+..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~-~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSP-KQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc-ccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 799999999998 66899999999999877666554433221 11135799999997666655555543
No 256
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.10 E-value=0.14 Score=70.72 Aligned_cols=101 Identities=14% Similarity=0.047 Sum_probs=64.7
Q ss_pred CCCcHHHHHHHHHHhc-c-CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 302 EQARPYQLDVLEQAKK-K-NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~-n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
..+++-|++++..++. + -++|.+..|+|||.+ +-.+...+.. .+.+|+.++||---+ ..+..-+|+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-----~G~~V~~~ApTGkAA----~~L~e~tGi~a 414 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-----AGYEVRGAALSGIAA----ENLEGGSGIAS 414 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-----cCCeEEEecCcHHHH----HHHhhccCcch
Confidence 5799999999999988 4 378999999999986 3445554443 256799999996433 34443222211
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
. |-..|+.....+...+...++||||||-.+..
T Consensus 415 ~----------------------------TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 415 R----------------------------TIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred h----------------------------hHHHHHhhhcccccccccCcEEEEECcccCCH
Confidence 1 22222211122333456778999999987644
No 257
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.10 E-value=0.075 Score=63.04 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=85.7
Q ss_pred CCCCCCcHHHHHHHHHHhcc---CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 299 MPEEQARPYQLDVLEQAKKK---NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~~---n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
.|+....-+|.-|+..++.. =+.+.+.-|||||+-|+....+-... ...-.++||-=|++++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e---~~~y~KiiVtRp~vpvG----------- 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLE---RKRYRKIIVTRPTVPVG----------- 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHH---HhhhceEEEecCCcCcc-----------
Confidence 45566677888999999883 36889999999999998865433222 22345688888887663
Q ss_pred CCcEEEEeCCCcccccchHHHHhhc-CCccEEE----EcHHHHHHHHhccccccccee----------EEEEeCCCcccC
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLV----MTAQILLNILRHSIIKMEAIN----------LLILDECHHAVK 440 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV----~Tpq~L~d~L~~~~l~l~~i~----------lLV~DEaH~~~~ 440 (1931)
-.++.+-|.... +-..|...+ .+-.+++ ++-+.|...+.++.+.+..+. +||+|||+.+..
T Consensus 290 -~dIGfLPG~eEe---Km~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp 365 (436)
T COG1875 290 -EDIGFLPGTEEE---KMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP 365 (436)
T ss_pred -cccCcCCCchhh---hccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH
Confidence 223333333211 122343322 1212222 235677777777665443333 899999999965
Q ss_pred CCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 441 KHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 441 ~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
| .|+.++.+.-. ..+ +-+|+-|.+
T Consensus 366 -h----eikTiltR~G~--GsK-IVl~gd~aQ 389 (436)
T COG1875 366 -H----ELKTILTRAGE--GSK-IVLTGDPAQ 389 (436)
T ss_pred -H----HHHHHHHhccC--CCE-EEEcCCHHH
Confidence 2 34445544322 234 445665553
No 258
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=95.08 E-value=0.017 Score=69.21 Aligned_cols=66 Identities=24% Similarity=0.225 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
.-+-.|+||+|+-.-..|+|++.+.+.+ +-.|...|.++...|+ .|.| .|||.||..||+.+|+.|
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~n~--stpysa~v~~d~~~yG---sG~g---~sKK~Ak~~AAR~tLeiL 441 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAENDNN--STPYSAGVLPDLFPYG---SGVG---ASKKTAKLVAARDTLEIL 441 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhccCC--CCcccccccccccccc---cccc---cchHHHHHHHHHHHHHHh
Confidence 4468899999999999999987665544 4569999999988777 7888 999999999999999876
No 259
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=94.99 E-value=0.064 Score=67.43 Aligned_cols=63 Identities=29% Similarity=0.269 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHhhcCCceeEEecc-----CCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRS-----GNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~-----g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
.++|+..|+|+.+ .+.|..... .+.|.|.|.|+|+.+-.| |.|||+||+.||..||+.|....
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 7899999999997 566664322 247999999999997777 99999999999999999997653
No 260
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.98 E-value=0.046 Score=66.93 Aligned_cols=123 Identities=15% Similarity=0.037 Sum_probs=76.8
Q ss_pred CcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000174 304 ARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYC 383 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~ 383 (1931)
+++-|.+++.. ..++++|.|..|||||.+.+.-+.+++... .....++|+|++|+..+....+.+...++-...
T Consensus 1 l~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~--~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~--- 74 (315)
T PF00580_consen 1 LTDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEG--GVPPERILVLTFTNAAAQEMRERIRELLEEEQQ--- 74 (315)
T ss_dssp S-HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTS--SSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCH---
T ss_pred CCHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhccc--cCChHHheecccCHHHHHHHHHHHHHhcCcccc---
Confidence 57889999999 779999999999999999998887777642 134456999999999999888888875421100
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccc--cceeEEEEeCCC
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM--EAINLLILDECH 436 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l--~~i~lLV~DEaH 436 (1931)
.... .............+.|+|-..+...+-+..... -.-++-|+|+..
T Consensus 75 --~~~~--~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 --ESSD--NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --CCTT---HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --cccc--cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000 001111111345688999988876543322211 122355666655
No 261
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.85 E-value=0.12 Score=60.51 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=20.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
..+++++|+|+|||..+.....+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999988776655443
No 262
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.75 E-value=0.12 Score=63.07 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHHh--------c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 303 QARPYQLDVLEQAK--------K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l--------~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
.++..+..++..+. . .+++++++||+|||..+..++.+++.. +..|+++ +...|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYR-TADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEE-EHHHHHHHH
Confidence 56777777777543 1 689999999999999888888777652 3445554 444554433
No 263
>PRK04296 thymidine kinase; Provisional
Probab=94.74 E-value=0.04 Score=62.18 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=25.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.++.+++|+|||..++..+.+... .+.+++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~------~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE------RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH------cCCeEEEEec
Confidence 478999999999888877766544 2466888866
No 264
>PRK12377 putative replication protein; Provisional
Probab=94.71 E-value=0.24 Score=58.06 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=30.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
.++++.+++|+|||..+..++.+++.. +..++ .++..+|..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~------g~~v~-~i~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK------GRSVI-VVTVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc------CCCeE-EEEHHHHHHHHH
Confidence 478999999999999999888777642 23344 444455655443
No 265
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.41 E-value=0.31 Score=56.94 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHhc---------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE
Q 000174 305 RPYQLDVLEQAKK---------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357 (1931)
Q Consensus 305 ~~~Q~eai~~~l~---------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L 357 (1931)
.+-|..++..+.+ ..+++.+++|+|||..+..++.++... +..++++
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~------g~~v~~i 133 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR------GKSVLII 133 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEE
Confidence 4556666665543 368999999999999998888776542 3456555
No 266
>PRK08181 transposase; Validated
Probab=94.34 E-value=0.38 Score=57.16 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHH----hc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 304 ARPYQLDVLEQA----KK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 304 ~~~~Q~eai~~~----l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
+...|..++..+ -+ +|+++++++|+|||..+..+..+.+.. +..|+|+ +...|+.+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~------g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN------GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc------CCceeee-eHHHHHHHH
Confidence 455666666433 23 889999999999999888877766552 3445554 344555543
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.088 Score=62.11 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=46.2
Q ss_pred CCCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+.-....++.++..+.. .|+++.+++|+|||..+..+..+++. .+.-+..+++.+|+.++...+.
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~-------~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 81 FEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLK-------AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-------cCCeEEEEEHHHHHHHHHHHHh
Confidence 34444566666655542 68999999999999999998888774 2345666677788777666554
No 268
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.08 E-value=0.24 Score=52.81 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEecccccCCCCCC--CCEEEEcCCCC
Q 000174 766 TFQMQETIAKFRDGR-VTLLVATSVAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~-~~vLVaTdVaeeGlDip~--~~lVI~fD~p~ 809 (1931)
..+..+++++|+... ..||++|.-..||||+|+ |..||...+|.
T Consensus 33 ~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 345688999999654 369999977999999999 67888877664
No 269
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.96 E-value=0.34 Score=66.13 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCC---CCceeEEEEccCCCccccHHHHHHHHHHhhc----C
Q 000174 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSL---SFVKSASLIGHNNSQEMRTFQMQETIAKFRD----G 779 (1931)
Q Consensus 707 ~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l---~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~----G 779 (1931)
..+.+.|.+........+|||.++-...+.+.+.+.....+ ...+..++-+. + ..++.+++++|+. |
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~----~--~~~~~~~l~~f~~~~~~~ 581 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK----D--AQETSDALERYKQAVSEG 581 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC----C--cchHHHHHHHHHHHHhcC
Confidence 45556565553344578999999999888888877652100 01123344331 1 1467889999974 4
Q ss_pred CceEEEEe--cccccCCCCCC--CCEEEEcCCCC
Q 000174 780 RVTLLVAT--SVAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 780 ~~~vLVaT--dVaeeGlDip~--~~lVI~fD~p~ 809 (1931)
+-.||+|+ ...+||||+++ +..||...+|.
T Consensus 582 ~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 582 RGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred CceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 55699999 78999999999 88999998886
No 270
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.94 E-value=0.54 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.+++.+++|+|||..+...+..+.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999987776665543
No 271
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.91 E-value=0.32 Score=58.18 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHh---c---cCEEEEeCCCchHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAK---K---KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l---~---~n~Il~~~TGsGKTliall~i~ 339 (1931)
.-+++.+.+++..+. . ..+++.+++|+|||..+-..+.
T Consensus 22 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 22 FYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 445666666766653 2 3578999999999987776543
No 272
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=93.89 E-value=0.067 Score=67.60 Aligned_cols=149 Identities=20% Similarity=0.150 Sum_probs=96.6
Q ss_pred CCCChHHHHHHHHhhcCCceeE-------EeccCC----eEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh--
Q 000174 1764 PMHPVRELQERCQQQAEGLEYK-------ASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK-- 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~-------~~~~g~----~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~-- 1830 (1931)
+.+|...+..+-+ +...++|+ ++..+| .|+.+|.++|.. .+..|.||+.|+..||.+.|......
T Consensus 369 f~d~nak~mhl~g-rRhrLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~-~~a~gps~~~~~wh~~~k~lq~~~~p~g 446 (816)
T KOG3792|consen 369 FNDPNAKEMHLKG-RRHRLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLP-AEAEGPSKKTAKWHAARKRLQNEGRPTG 446 (816)
T ss_pred CCCcchHHhhhhc-ccccceeccccCCCceeccCCcccchhhhhhhhcCCc-cccCCcccccchHHHHHHHhhccCCCcc
Confidence 3455555555543 33456887 234443 689999999887 56779999999999999998876310
Q ss_pred --------hhhhhhccC--CcCCcc-------c---------------------CCCCccchHHHHHHHHHHcCCCCCcc
Q 000174 1831 --------ETAEAKEKG--DENGKK-------R---------------------KNGTQTFTRQTLNDICLRRNWPMPLY 1872 (1931)
Q Consensus 1831 --------~~~~~~~~~--~~~~~~-------~---------------------~~~~~~n~~~~L~e~~~~~~~~~p~y 1872 (1931)
+........ ...... . ......|++..|+|--... .|
T Consensus 447 a~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek~rg~-----k~ 521 (816)
T KOG3792|consen 447 AAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEKRRGD-----KY 521 (816)
T ss_pred ccccccccCCCcccCCCCCCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhhcccc-----ce
Confidence 000000000 000000 0 0011256788888853333 38
Q ss_pred eeecccC-CCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHH
Q 000174 1873 RCVREGG-PAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELL 1926 (1931)
Q Consensus 1873 ~~~~~~G-p~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L 1926 (1931)
++..+.| -+|.+.|++.|.+. ++.+.|.| .+||-|+..||.-+++.+
T Consensus 522 El~set~~gs~~~R~v~gV~rv----G~~akG~~---~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 522 ELPSETGTGSHDKRFVKGVMRV----GILAKGLL---LNGDRAVELALLCAEKPT 569 (816)
T ss_pred ecccccCCCCCCceeeeeeeee----ehhhcccc---ccchHHHHHHHHhccCcc
Confidence 8888888 89999999999995 45778899 999999999988876544
No 273
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.41 E-value=0.85 Score=60.68 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHhc--------cCE-EEEeCCCchHHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNT-IAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~-Il~~~TGsGKTliall~i~~~l~ 343 (1931)
-|+-|.+.|..++. .++ .|+++||+|||.+.-..+.++..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46666666655443 345 49999999999998888766543
No 274
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.37 E-value=0.31 Score=52.05 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCCc---eEEEEecc--cccCCCCCC--CCEEEEcCCCC
Q 000174 768 QMQETIAKFRDGRV---TLLVATSV--AEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~~---~vLVaTdV--aeeGlDip~--~~lVI~fD~p~ 809 (1931)
+..+++++|++..- .||+++.- ..||||+|+ |..||...+|.
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34688999996543 59998876 899999999 78899888774
No 275
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.33 E-value=0.16 Score=53.43 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=27.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
+.+++.+++|+|||..+..++..+.. ....++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEc
Confidence 46899999999999988887665422 1124777776643
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.32 E-value=1.2 Score=55.26 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=64.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.+++++|||+|||.....++....... +..++.++.. + +.=+.+|...+.+.+++.+..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~----G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~------------- 200 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRF----GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV------------- 200 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEecccccccHHHHHHHHHHHcCCceEec-------------
Confidence 4578999999999988888776654321 1133444432 2 1123344444445555544432
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.+++.+...+. .+.+.++|+||++=+...+......+..+.... ...-.+|.++||-.
T Consensus 201 ------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~--~~~~~lLVLsAts~ 258 (374)
T PRK14722 201 ------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGAD--TPVQRLLLLNATSH 258 (374)
T ss_pred ------------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccC--CCCeEEEEecCccC
Confidence 23333333332 245679999999966543323333444332211 11245788899854
No 277
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.17 E-value=0.66 Score=52.56 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=69.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-C-ChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-P-KVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-P-T~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++++|||+|||-...-++.++..+ +.++.+++ - -|.=+..|.+.+.+.+++++....-...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~------~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~---------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK------GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD---------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT------T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc------cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh----------
Confidence 5789999999998888877665442 33444444 2 3444555666666666666544221110
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
..+.+.+.+.. ...++.++|++|-+-+...+......|+.+..... ..-..|.|+||-.
T Consensus 68 -----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~--~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 68 -----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN--PDEVHLVLSATMG 126 (196)
T ss_dssp -----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS--SSEEEEEEEGGGG
T ss_pred -----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC--CccceEEEecccC
Confidence 01122233332 23456899999999877654344555666666542 2245788888854
No 278
>PRK08727 hypothetical protein; Validated
Probab=93.16 E-value=0.25 Score=57.72 Aligned_cols=24 Identities=25% Similarity=0.129 Sum_probs=19.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
-+++++++|+|||..+.....+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999988777665543
No 279
>PRK06893 DNA replication initiation factor; Validated
Probab=93.15 E-value=0.28 Score=57.22 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=20.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.+++++++|+|||..+.....++..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999988887766554
No 280
>PRK14974 cell division protein FtsY; Provisional
Probab=93.10 E-value=0.83 Score=55.97 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=65.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC---hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK---VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT---~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+++.+++|+|||-....++..+.. .+.+++++..- ..-..|+.... ..+++++.....+ .+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~------~g~~V~li~~Dt~R~~a~eqL~~~a-~~lgv~v~~~~~g--~dp------ 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK------NGFSVVIAAGDTFRAGAIEQLEEHA-ERLGVKVIKHKYG--ADP------ 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------cCCeEEEecCCcCcHHHHHHHHHHH-HHcCCceecccCC--CCH------
Confidence 678999999999877776654332 23456555432 34455554433 3456554321111 100
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
...+.+.+.. ......++||+|.+.++..+...-..++.+..... ..-.+|.++||..
T Consensus 208 -------------~~v~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~--pd~~iLVl~a~~g 265 (336)
T PRK14974 208 -------------AAVAYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTK--PDLVIFVGDALAG 265 (336)
T ss_pred -------------HHHHHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhC--CceEEEeeccccc
Confidence 0112233332 12245689999999999755445555555554332 2245677888754
No 281
>PRK05642 DNA replication initiation factor; Validated
Probab=93.00 E-value=0.28 Score=57.42 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=25.4
Q ss_pred cceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeec
Q 000174 425 EAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS 469 (1931)
Q Consensus 425 ~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTAT 469 (1931)
.+.++||+|+.|...+...+...+-.++......+ +.+.+|++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g--~~ilits~ 138 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSG--RRLLLAAS 138 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcC--CEEEEeCC
Confidence 35679999999988765444444444444332222 34566665
No 282
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=92.96 E-value=0.9 Score=63.34 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=66.2
Q ss_pred CCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 301 EEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
...|++-|.+++..+.. +-++|.+.-|+|||.+.-... ..+.. .+.+|+.++||-- .+..|.+.+|+.
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~-~~~e~-----~G~~V~g~ApTgk----AA~~L~e~~Gi~ 448 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAR-EAWEA-----AGYRVVGGALAGK----AAEGLEKEAGIQ 448 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHH-HHHHH-----cCCeEEEEcCcHH----HHHHHHHhhCCC
Confidence 35799999999998865 457899999999997665543 33332 3567999999953 445666655554
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...++ .++-....+...+..-++||||||..+..
T Consensus 449 a~TIa----------------------------s~ll~~~~~~~~l~~~~vlVIDEAsMv~~ 482 (1102)
T PRK13826 449 SRTLS----------------------------SWELRWNQGRDQLDNKTVFVLDEAGMVAS 482 (1102)
T ss_pred eeeHH----------------------------HHHhhhccCccCCCCCcEEEEECcccCCH
Confidence 33322 11101111223456677999999987744
No 283
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.69 E-value=0.24 Score=62.06 Aligned_cols=107 Identities=15% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCcHHHHHHHHHHh------c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH--HHHHHH
Q 000174 303 QARPYQLDVLEQAK------K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ--AEVIRE 373 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l------~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~--~~~l~~ 373 (1931)
+|.+-|++++..++ + .++.|.++-|+|||++.-.++..+ . ..+..+++++||-.=|..+ -..++.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~-----~~~~~~~~~a~tg~AA~~i~~G~T~hs 74 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-R-----SRGKKVLVTAPTGIAAFNIPGGRTIHS 74 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-c-----cccceEEEecchHHHHHhccCCcchHH
Confidence 46788999988883 3 678999999999999876655433 2 2356799999997555444 344555
Q ss_pred HcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 374 QTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 374 ~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
++++.+..-. .. ..-+.....+ .-.+..+++||+||+=.+..
T Consensus 75 ~f~i~~~~~~----~~--------------~~~~~~~~~~-------~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 75 FFGIPINNNE----KS--------------QCKISKNSRL-------RERLRKADVLIIDEISMVSA 116 (364)
T ss_pred hcCccccccc----cc--------------cccccccchh-------hhhhhhheeeecccccchhH
Confidence 5555433210 00 0000011111 12467889999999977755
No 284
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.61 E-value=0.56 Score=54.52 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=20.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++.+++|+|||..+.....+..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999998887766543
No 285
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=92.54 E-value=0.2 Score=65.07 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=110.2
Q ss_pred CChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCEEE-EEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 000174 1766 HPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGVQV-GVAQNPQKKMAQKLAARNALAVLKEKETAEAKEKGD 1840 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~~~-~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~ 1840 (1931)
+-+.-|..||.+....+.|.+..+++ .|.|.|.+.+..+ +.|....||.|+..||+.-++.|-..+...+....+
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 34677899999999999999876653 6899999887543 677788899999999999999886544332221100
Q ss_pred c---------------------------------CC-----------------------------------------ccc
Q 000174 1841 E---------------------------------NG-----------------------------------------KKR 1846 (1931)
Q Consensus 1841 ~---------------------------------~~-----------------------------------------~~~ 1846 (1931)
. ++ ...
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih 161 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH 161 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence 0 00 000
Q ss_pred CCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecC--CCcceeEECCCCCCHHHHHHHHHHHHHH
Q 000174 1847 KNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD--KGWTDECVGEPMPSVKKAKDSAAVLLLE 1924 (1931)
Q Consensus 1847 ~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~--~~~~~~g~g~~~~sKK~Ak~~AA~~~l~ 1924 (1931)
.+....|.+..|+++-|+.....- |+ ....||.|.+.|+.+..+-... ...+..+.| ++||.|....|.....
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~~~~-y~-~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~g---snkk~~~~~ca~s~vr 236 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRIQDN-YK-YTIVGPEHVRSFEAEASIYVPQLNRNLVAKETG---SNKKVAEASCALSLVR 236 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhhccc-cc-eeecCCccccchhhhHHHhhhhhchhhhhhhcc---ccceecCcchHHHHHH
Confidence 011126899999999999998444 76 4478999999999987764332 233445678 9999999999887766
Q ss_pred HH
Q 000174 1925 LL 1926 (1931)
Q Consensus 1925 ~L 1926 (1931)
+|
T Consensus 237 qm 238 (1282)
T KOG0921|consen 237 QL 238 (1282)
T ss_pred HH
Confidence 54
No 286
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.37 E-value=1.2 Score=55.01 Aligned_cols=117 Identities=17% Similarity=0.195 Sum_probs=63.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C--hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K--VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ 394 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T--~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~ 394 (1931)
+.+.++++||+|||.....++..+.. .+.++.++.- + ..-+.||..... ..++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~------~GkkVglI~aDt~RiaAvEQLk~yae-~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDHSRIGTVQQLQDYVK-TIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH------cCCcEEEEecCCcchHHHHHHHHHhh-hcCCcE---------------
Confidence 45789999999999887777665433 1334444443 3 234455443222 222222
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHhccccc-ccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 395 RWQREFDTKQVLVMTAQILLNILRHSIIK-MEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 395 ~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~-l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
+++.+|..+.+.+.. +. -.+.++||+|-+=+...+...-..+..+..... ..-.+|-++||-
T Consensus 300 ----------~v~~d~~~L~~aL~~--lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~--PdevlLVLsATt 362 (436)
T PRK11889 300 ----------IAVRDEAAMTRALTY--FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVE--PDYICLTLSASM 362 (436)
T ss_pred ----------EecCCHHHHHHHHHH--HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcC--CCeEEEEECCcc
Confidence 223467777766643 11 125899999998776554333333344443221 112345677773
No 287
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.18 E-value=1.5 Score=55.78 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=65.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.++++++||+|||.....++..+... ..+.+|.+|.- + +.-+..+.......+++.+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~---------------- 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALL----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV---------------- 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce----------------
Confidence 356889999999998777766555411 12334554442 2 1111112222222233322
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.++.++..+...+.. +.+.++||||-+-+...+......+..++... .......|.++||..
T Consensus 282 ---------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFS-GEPIDVYLVLSATTK 343 (424)
T ss_pred ---------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc-CCCCeEEEEEECCCC
Confidence 223445555555543 34689999999977655444455566665521 122355788999865
No 288
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.05 E-value=0.72 Score=55.00 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=20.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+|+|+|||.++-+.+..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999988877654
No 289
>PHA02533 17 large terminase protein; Provisional
Probab=91.42 E-value=1.4 Score=57.70 Aligned_cols=147 Identities=15% Similarity=0.160 Sum_probs=83.3
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC----
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---- 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---- 376 (1931)
..|.|+|++.+..+.. +-.++..+=..|||.+....+...+.. .++..+++++|+..-+....+.++....
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~----~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF----NKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 6799999999988754 555788888999998777655433321 2345899999998877777666664321
Q ss_pred -CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
++..+... .... ...-.+..|.+.|... +...-...+++|+||+|...+ +..+...++...
T Consensus 134 l~~~~i~~~-------~~~~-I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~---~~e~~~ai~p~l 195 (534)
T PHA02533 134 FLQPGIVEW-------NKGS-IELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN---FIDFWLAIQPVI 195 (534)
T ss_pred Hhhcceeec-------CccE-EEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC---HHHHHHHHHHHH
Confidence 11111100 0000 0001345554544321 112334567999999998754 234444444443
Q ss_pred CCCCCcEEEEEeecCC
Q 000174 456 SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~ 471 (1931)
......+ +.+..||.
T Consensus 196 asg~~~r-~iiiSTp~ 210 (534)
T PHA02533 196 SSGRSSK-IIITSTPN 210 (534)
T ss_pred HcCCCce-EEEEECCC
Confidence 3322244 44455663
No 290
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=91.24 E-value=0.34 Score=65.55 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY 382 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~ 382 (1931)
.|++-|++++.. ....++|.|..|||||.+.+.-+.+++... .-+..++|+|+-|+.-+....+.+...++..
T Consensus 2 ~Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~---- 74 (672)
T PRK10919 2 RLNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVAQTLGRK---- 74 (672)
T ss_pred CCCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCHHHeeeEechHHHHHHHHHHHHHHhCcc----
Confidence 588999999875 348899999999999999999888887642 2234579999999999988878777654310
Q ss_pred eCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 383 CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 383 ~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
....|.|+|...|...+
T Consensus 75 ------------------~~~~v~i~TfHS~~~~i 91 (672)
T PRK10919 75 ------------------EARGLMISTFHTLGLDI 91 (672)
T ss_pred ------------------cccCcEEEcHHHHHHHH
Confidence 11247899998887543
No 291
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.23 E-value=0.91 Score=58.68 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=31.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
+.+++++++|+|||..+.....++... .++.+++++.. ..+..+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~v~yi~~-~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK----NPNAKVVYVTS-EKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEEEH-HHHHHHHHHH
Confidence 348899999999999888877665542 23455666643 4554443333
No 292
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.14 E-value=1.1 Score=57.17 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+++++++|+|||..+..+..++... ..+..++++..
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~----~~~~~v~yi~~ 174 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILEN----NPNAKVVYVSS 174 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHh----CCCCcEEEEEH
Confidence 46899999999999887776665542 23455666643
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.11 E-value=2 Score=53.89 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
=|.-|.+.+...+. .+++|.+++|+|||.+.-..+.++.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 35666655555432 5799999999999988877766553
No 294
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.05 E-value=0.92 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.6
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~ 340 (1931)
+++.+|.|+|||..+-.++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999988776654
No 295
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=90.86 E-value=43 Score=44.89 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred CcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC-CcEEE
Q 000174 304 ARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG-YVVGH 381 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~-l~v~~ 381 (1931)
+-+||++++..++. ..+++....|.|=--+++-.+..+ ..++..++ |+.+.+.-.++. ...+. .-+..
T Consensus 14 lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~l~~~~l~~~------s~~~sL~L-vLN~~~~ee~~f---~s~lk~~~~t~ 83 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEADGNLLVLAPGLSLLRLVAELLILF------SPPGSLVL-VLNTQEAEEEYF---SSKLKEPLVTE 83 (892)
T ss_pred cchhHHHHHHhhhcccCceEEecCCcCHHHHHHHHHHHh------CCccceEE-EecCchhhHHHH---HHhcCcCCCcc
Confidence 78999999999996 555778888988544333322211 12233333 344555544432 22221 11222
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCc
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRP 461 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p 461 (1931)
+...... ...+......-|.++|.-+|.-.+-.+.+....+.-|+++-||.+.+...-+-|++.|....+. -
T Consensus 84 ~~s~ls~-----~~R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~knk~---g 155 (892)
T KOG0442|consen 84 DPSELSV-----NKRRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYRSKNKT---G 155 (892)
T ss_pred Chhhcch-----hhhHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHHHhcCC---c
Confidence 2222222 2222333466788888888877777788999999999999999999876667777766654432 2
Q ss_pred EEEEEeecCC
Q 000174 462 SVFGMTASPV 471 (1931)
Q Consensus 462 ~iLgLTATP~ 471 (1931)
.|=++|-.|.
T Consensus 156 fIkAFsd~P~ 165 (892)
T KOG0442|consen 156 FIKAFSDSPE 165 (892)
T ss_pred ceeccccCch
Confidence 3444555554
No 296
>PRK08116 hypothetical protein; Validated
Probab=90.78 E-value=1.7 Score=51.98 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=28.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
+++++++|+|||..+..++.+++.. +..++++ +...|+.++
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~------~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEK------GVPVIFV-NFPQLLNRI 157 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEE-EHHHHHHHH
Confidence 8999999999999999877776552 3445544 444554433
No 297
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=90.71 E-value=0.33 Score=49.09 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1401 CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1401 nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
|-=-|.|+||||+.+.|-.|+....-. ..+.||..-.+.||-+.=+.+-
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il 62 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALIL 62 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHH
Confidence 334588999999999999988876433 6889999999999888655553
No 298
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.46 E-value=0.73 Score=58.24 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=66.3
Q ss_pred hhhhcCCCCCCcH----HHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARP----YQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~----~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
..|++..-.+++. +|.|==+.+.. .-+||.+..|||||-+++.-+..++-..+..-..+.||||.|.+.+..-
T Consensus 196 ~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleY 275 (747)
T COG3973 196 RVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEY 275 (747)
T ss_pred HHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHH
Confidence 5566666666655 34443333333 4478999999999999999887777665554445569999999988776
Q ss_pred HHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHH
Q 000174 367 QAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLN 415 (1931)
Q Consensus 367 ~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d 415 (1931)
+..++-++ ....|+..|++-+.-
T Consensus 276 is~VLPeL--------------------------Ge~~V~q~Tf~e~a~ 298 (747)
T COG3973 276 ISRVLPEL--------------------------GEEGVVQETFEEWAL 298 (747)
T ss_pred HHHhchhh--------------------------ccCceeeccHHHHHH
Confidence 66655442 234678889887763
No 299
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.25 E-value=0.42 Score=64.92 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 702 VTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+|+......+... ..+...++|||++.-...+++...+.- .++.....-+ .+.-...+..|++ -
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~----N~I~~~~~~~--------t~d~~dc~~~fk~-I 1267 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLM----NLIKKQLDGE--------TEDFDDCIICFKS-I 1267 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHh----hhhHhhhccC--------Ccchhhhhhhccc-c
Confidence 345555554444332 245568999999999999988877764 3444333322 1233457778877 2
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEEEEe---cCChhHHHHHHHHHHHHHHHHH
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMIE---RGNLSHATFLRNARNSEETLRK 855 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~---~~~~~~~~~l~~~~~~e~~l~~ 855 (1931)
-.+|+=++.++-|+|+-++.+|+..++-.|+..-.|.+||..|.|++--.++- -.+...+.++......++.+..
T Consensus 1268 ~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~~ 1345 (1394)
T KOG0298|consen 1268 DCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLTK 1345 (1394)
T ss_pred eEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHhh
Confidence 23678889999999999999999999999999999999999999998332221 1223345566555555655544
No 300
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.20 E-value=1.1 Score=55.67 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=30.8
Q ss_pred cccceeEEEEeCCCcccCCC--cHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 423 KMEAINLLILDECHHAVKKH--PYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 423 ~l~~i~lLV~DEaH~~~~~~--~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.+..+++|||||.--+.... .-..+|+.++....-.+....+.-.|+.+
T Consensus 257 ~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~v 307 (449)
T TIGR02688 257 LVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFV 307 (449)
T ss_pred hhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEE
Confidence 36789999999998855322 24567777776543333344555666655
No 301
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.20 E-value=1.5 Score=58.04 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc----CCceEEEEecccccCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD----GRVTLLVATSVAEEGLD 795 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~----G~~~vLVaTdVaeeGlD 795 (1931)
...+++|.+.+......+++.|... +. -...+.| +.+ .+.+++++|+. |+-.||++|+-+-||||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~--l~--~~~l~qg-----~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELG--IP--AEIVIQS-----EKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhh--cC--CCEEEeC-----CCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 3567888888888888888888651 11 3345555 322 34678999996 46789999999999999
Q ss_pred C--------CC--CCEEEEcCCCC
Q 000174 796 I--------RQ--CNVVIRFDLAK 809 (1931)
Q Consensus 796 i--------p~--~~lVI~fD~p~ 809 (1931)
+ |+ +.+||..-+|.
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCCC
Confidence 9 23 99999888774
No 302
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.13 E-value=0.58 Score=62.97 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=69.5
Q ss_pred hhcCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 296 KEKMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
........|++-|++++.... .+++|.+..|||||.+.+.-+.+++... .....++|+|+.|+..+....+.+...+
T Consensus 189 f~~~e~~~L~~~Q~~av~~~~-~~~lV~agaGSGKT~vl~~r~ayLl~~~--~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 189 FSQVESSPLNPSQARAVVNGE-DSLLVLAGAGSGKTSVLVARAGWLLARG--QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred HHhccCCCCCHHHHHHHhCCC-CCeEEEEeCCCCHHHHHHHHHHHHHHhC--CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 333445789999999986432 6789999999999999998888777642 2234579999999999887777777654
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNI 416 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~ 416 (1931)
+ ...|-|.|-..|...
T Consensus 266 g-------------------------~~~v~v~TFHSlal~ 281 (684)
T PRK11054 266 G-------------------------TEDITARTFHALALH 281 (684)
T ss_pred C-------------------------CCCcEEEeHHHHHHH
Confidence 3 025778999888743
No 303
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=89.76 E-value=0.81 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 306 PYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 306 ~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+|..++..+++ -+.+.++|.|+|||-++++..+++.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 367777766654 3579999999999999998877653
No 304
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.67 E-value=1.9 Score=55.45 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=30.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+++++++|+|||........++.. ..++.+++++.. ..+..+....+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEH-HHHHHHHHHHHH
Confidence 34789999999999776555443332 123456666555 455555444443
No 305
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.32 E-value=0.3 Score=64.31 Aligned_cols=155 Identities=10% Similarity=0.088 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH-HHHHHc--
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE-VIREQT-- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~-~l~~~~-- 375 (1931)
...+|||.+.+..+-. +.+.+...+-+|||.+.+..+-..+.. ....++++.||..++..+.+ .|...+
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-----~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-----DPGPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-----CCCCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 4789999999999887 678999999999999777776655553 34679999999999998863 444332
Q ss_pred --CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-----CcHHHHH
Q 000174 376 --GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-----HPYSLVM 448 (1931)
Q Consensus 376 --~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-----~~~~~im 448 (1931)
.++ ..+..... .........+.|.+..+.++....-. .+....+.+|++||.+..-.+ ++.....
T Consensus 90 sp~l~-~~~~~~~~-~~~~~t~~~k~f~gg~l~~~ga~S~~------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~ 161 (557)
T PF05876_consen 90 SPVLR-RKLSPSKS-RDSGNTILYKRFPGGFLYLVGANSPS------NLRSRPARYLLLDEVDRYPDDVGGEGDPVELAE 161 (557)
T ss_pred CHHHH-HHhCchhh-cccCCchhheecCCCEEEEEeCCCCc------ccccCCcCEEEEechhhccccCccCCCHHHHHH
Confidence 111 11211000 00011223334456666665544322 244567899999999999532 3444443
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCCC
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVNL 473 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~~ 473 (1931)
+..... ...+.+++..||...
T Consensus 162 ~R~~tf----~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 162 KRTKTF----GSNRKILRISTPTIE 182 (557)
T ss_pred HHHhhh----ccCcEEEEeCCCCCC
Confidence 332222 123456677888853
No 306
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=89.30 E-value=2.4 Score=46.01 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=28.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
++|.+++|+|||..+...+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh------cCCEEEEEECCcchH
Confidence 678999999999988887765543 245678877765443
No 307
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.26 E-value=3.3 Score=51.64 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICND 344 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~~ 344 (1931)
.-|+-|.+.+..++. .|+++.++||+|||.+.-..+.++...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 445666655554432 679999999999999998888776553
No 308
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.15 E-value=1.2 Score=60.50 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=75.4
Q ss_pred CCCHHHHHHH-HHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSLI-KILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~Li-~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-.... -++... ..+.+++|.++++.-|...++.++.+-.-.++++..++| +++..+|.++++...+|
T Consensus 291 TGSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G-----~~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 291 VGSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTG-----SLKGKERREILEAIASG 363 (681)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcC-----CCCHHHHHHHHHHHhCC
Confidence 4566765433 333332 246799999999999999888887652223689999999 99999999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEE
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+++|+|+|. .+...+.+.++.+||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 999999995 4666788888888874
No 309
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=89.11 E-value=1.2 Score=61.18 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=68.1
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..|++-|++++... ...++|.|..|||||.+...-|.+++... .-+..++|+|+-|+..+....+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~~L~~Ria~Li~~~--~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~--- 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP-PGNLLVLAGAGSGKTRVLTHRIAWLLSVE--NASPHSIMAVTFTNKAAAEMRHRIGALLGTS--- 76 (715)
T ss_pred cccCHHHHHHHcCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCCHHHeEeeeccHHHHHHHHHHHHHHhccc---
Confidence 35899999998652 48899999999999999888888877632 2234579999999999888888887754310
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
...+.|+|...+...+
T Consensus 77 --------------------~~~~~i~TfHs~~~~i 92 (715)
T TIGR01075 77 --------------------ARGMWIGTFHGLAHRL 92 (715)
T ss_pred --------------------ccCcEEEcHHHHHHHH
Confidence 1246789998877543
No 310
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=88.86 E-value=1.6 Score=59.59 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=67.7
Q ss_pred CcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000174 304 ARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYC 383 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~ 383 (1931)
|++-|++++.. ...+++|.+..|||||.+.+.-|.+++... ......+++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~--~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQNC--GYKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 78899998864 348899999999999999999888887531 1234679999999988888888777655311
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
...+|.|.|-..|...+
T Consensus 74 -----------------~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 -----------------EARGLTISTFHTLGLDI 90 (664)
T ss_pred -----------------ccCCeEEEeHHHHHHHH
Confidence 12357899999887654
No 311
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=88.85 E-value=1.4 Score=60.47 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..|++-|++++... ...++|.|..|||||.+...-|.+++... .-+...+|+|+-|+..+....+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~--~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~--- 81 (721)
T PRK11773 8 DSLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVE--NASPYSIMAVTFTNKAAAEMRHRIEQLLGTS--- 81 (721)
T ss_pred HhcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC--CCChhHeEeeeccHHHHHHHHHHHHHHhccC---
Confidence 46999999998743 47899999999999999988888877532 2234579999999999988888887754310
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
...+.|+|...+...+
T Consensus 82 --------------------~~~~~i~TfHs~~~~i 97 (721)
T PRK11773 82 --------------------QGGMWVGTFHGLAHRL 97 (721)
T ss_pred --------------------CCCCEEEcHHHHHHHH
Confidence 1246789998887644
No 312
>PRK06921 hypothetical protein; Provisional
Probab=88.79 E-value=1.4 Score=52.59 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=29.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
.++++.+++|+|||..+..++.+++.. .+..|+++. ...|..+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~-----~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRK-----KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhh-----cCceEEEEE-HHHHHHH
Confidence 569999999999999888877766542 134466555 3444443
No 313
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.75 E-value=1.3 Score=56.76 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=26.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+++++++|+|||..+.....++... .++.+++++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~----~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQN----EPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEEH
Confidence 58999999999999887776665442 23456777654
No 314
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=88.70 E-value=0.86 Score=53.12 Aligned_cols=89 Identities=10% Similarity=0.041 Sum_probs=57.1
Q ss_pred cCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCC-cccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccc
Q 000174 348 QNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYCGEM-GQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKM 424 (1931)
Q Consensus 348 ~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~G~~-~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l 424 (1931)
.++.+.+|||+..--=|....+.++.+- +..|.-+..-. .... +...-.....+|.|+||++|..+++.+.+.+
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~e---qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l 199 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEE---QVKLLKKTRVHIAVGTPGRLSKLLENGALSL 199 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHH---HHHHHHhCCceEEEeChHHHHHHHHcCCCCc
Confidence 3455778888887544555555555542 13333333222 2211 1111111378999999999999999999999
Q ss_pred cceeEEEEeCCCccc
Q 000174 425 EAINLLILDECHHAV 439 (1931)
Q Consensus 425 ~~i~lLV~DEaH~~~ 439 (1931)
+.+.+||||--|.=.
T Consensus 200 ~~l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 200 SNLKRIVLDWSYLDQ 214 (252)
T ss_pred ccCeEEEEcCCcccc
Confidence 999999999877543
No 315
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.68 E-value=1.7 Score=53.95 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHhc--c--CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK--K--NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 305 ~~~Q~eai~~~l~--~--n~Il~~~TGsGKTliall~i~~~l 342 (1931)
++...+.+..+.. + .+++.+|+|+|||..+...+..+.
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444445555544 3 689999999999999888776654
No 316
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.63 E-value=0.72 Score=51.44 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=29.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
.|+++.+++|+|||..+..++.+++.. +..++|+ +...|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~------g~~v~f~-~~~~L~~ 88 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK------GYSVLFI-TASDLLD 88 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT------T--EEEE-EHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC------CcceeEe-ecCceec
Confidence 789999999999999999988887762 4456665 4445544
No 317
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.57 E-value=1.3 Score=56.68 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=27.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
.+++++++|+|||..+.....++... +.+++++.. ..+..
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~------~~~v~yi~~-~~f~~ 182 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES------GGKILYVRS-ELFTE 182 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEeeH-HHHHH
Confidence 48999999999998888776655431 345666654 33433
No 318
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.52 E-value=1.3 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.+.|+++|.|+|||-++-++..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH
Confidence 6789999999999998887754
No 319
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.33 E-value=1.3 Score=52.73 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc-CCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~-~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
.|.+|+++||-|||.+.--....+-...... ..-+.+++-+|..+=..-.+..|-..++.+... .... ..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~---~~~~-----~~- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP---RDRV-----AK- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC---CCCH-----HH-
Confidence 5899999999999986543332221111001 112345666777666666666666655544221 1100 00
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+.+.+ .. +.--++.+|||||.|+++.
T Consensus 133 -----------~~~~~~-~l-----lr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 133 -----------LEQQVL-RL-----LRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred -----------HHHHHH-HH-----HHHcCCcEEEeechHHHhc
Confidence 011111 22 3345788999999999876
No 320
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=88.32 E-value=2.6 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
++++.+++|+|||.++...+..+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999777665543
No 321
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=88.24 E-value=1.9 Score=57.32 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|++++.|+|||.++..+.+.+.
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999888877654
No 322
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.12 E-value=3.4 Score=53.03 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=59.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+.++++++||+|||..+..++..+... +.+.++.++. .+ +.-+..|.......+++.+..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~----~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~-------------- 412 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQ----HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE-------------- 412 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCceEEEecccccccHHHHHHHhhcccCceeEe--------------
Confidence 456788999999998877766554432 1223344443 22 322222222222222222211
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.++..+...+.. +.+.++||||.+=+...+......+..+.... ....+|.+++++.
T Consensus 413 -----------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~---~~a~lLVLpAtss 470 (559)
T PRK12727 413 -----------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR---QVTSLLVLPANAH 470 (559)
T ss_pred -----------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhh---cCCcEEEEECCCC
Confidence 1234445555543 45689999999976643322222333332211 1245778888764
No 323
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.98 E-value=1.3 Score=56.41 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~ 341 (1931)
.|+++|.|+|||-++..+++.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999999998887765
No 324
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=87.61 E-value=2.1 Score=52.53 Aligned_cols=41 Identities=20% Similarity=0.240 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++|+|...+..+.. +-.++.++.|.|||..+...+..++-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 468999999999886 23689999999999988888776654
No 325
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.43 E-value=4 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+++|++++|+|||...-..+.++.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999998777766543
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=87.42 E-value=4.8 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=19.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+++++++|+|||.++..++..+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 468899999999998888776543
No 327
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.25 E-value=1.4 Score=57.74 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=29.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.++|++++|+|||.....+..+.... ..+.+++++.- ..++.+....+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~----~~g~~V~Yita-eef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRL----YPGTRVRYVSS-EEFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHh----CCCCeEEEeeH-HHHHHHHHHHH
Confidence 38999999999998877766554431 22345555543 45555444333
No 328
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.21 E-value=1.6 Score=50.58 Aligned_cols=105 Identities=13% Similarity=0.240 Sum_probs=54.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
++|++++|+|||........++... .++.+|+++... +........++.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 7899999999998544444333332 234556666542 333322222221
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeec-CC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTAS-PV 471 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTAT-P~ 471 (1931)
.....+.+ .+...++||||..|.+.+...+...+-.++....... .+++..|.. |.
T Consensus 86 --------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 --------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-KQLILTSDRPPS 142 (219)
T ss_dssp --------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-SEEEEEESS-TT
T ss_pred --------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-CeEEEEeCCCCc
Confidence 01122222 2456899999999999875333444434444332222 344444434 44
No 329
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.16 E-value=2.6 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+.+++++++|+|||..+.....+.
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999998877766544
No 330
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=87.12 E-value=7.8 Score=47.99 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=70.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+.+.+++|||.|||-.-.-++..+... .+.++..||-..| |.=+..|.+...+.++++
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~---~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp------------------ 262 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVML---KKKKKVAIITTDTYRIGAVEQLKTYADIMGVP------------------ 262 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhh---ccCcceEEEEeccchhhHHHHHHHHHHHhCCc------------------
Confidence 457899999999987666555444411 2233445555544 111222222222333333
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
-.+|-+|.-|...+.. +.+.++|.+|=+=+--.+-.+...|+.+..... ..-.-|.||||--
T Consensus 263 -------~~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~--~i~~~Lvlsat~K 324 (407)
T COG1419 263 -------LEVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSH--SIEVYLVLSATTK 324 (407)
T ss_pred -------eEEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccc--cceEEEEEecCcc
Confidence 3456677777766643 777899999977665544455666777776542 2245688899843
No 331
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.11 E-value=5.1 Score=47.97 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=59.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
.-++|.+++|+|||..++..+.+.+.. .+.+++++.-.- -..+....+.. ..+..+................|
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~-----~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQ-----HGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAA 104 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHh-----cCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHH
Confidence 457899999999998888776665542 245688887532 23444444433 23443322111000000011222
Q ss_pred HhhcC-CccEEEE------cHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QREFD-TKQVLVM------TAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~-~~~IlV~------Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...+. ...+.+- |...+...+..- ..-..+++||||..+.+..
T Consensus 105 ~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 105 FDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 22222 2222221 455555544421 1223688999999888764
No 332
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.55 E-value=0.54 Score=60.36 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=52.1
Q ss_pred HHhhcCCceEEEEecccccCCCCCCCCEE--------EEcCCCCCHHHHHHhhccCCCCCCc----EEEEEe
Q 000174 774 AKFRDGRVTLLVATSVAEEGLDIRQCNVV--------IRFDLAKTVLAYIQSRGRARKPGSD----YILMIE 833 (1931)
Q Consensus 774 ~~Fr~G~~~vLVaTdVaeeGlDip~~~lV--------I~fD~p~s~~~yiQr~GRa~R~Gs~----~ivlv~ 833 (1931)
++|-+|+-.|-|-+.+++-||-++.-..| |-..+||+...-||..||++|.++- |++++.
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 57999999999999999999999886655 4578999999999999999998765 877765
No 333
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.54 E-value=7.7 Score=46.21 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=64.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C--hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K--VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ 394 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T--~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~ 394 (1931)
..+.+.+++|+|||..+..++..+.. .+.++.++.- + ...+.||...... .++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~------~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~~~-------------- 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG------KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFEVI-------------- 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH------cCCeEEEEecCCCCHHHHHHHHHHhhh-cCceEE--------------
Confidence 56788999999999887776655432 1234544443 2 2566777654432 232222
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 395 RWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 395 ~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
...++..+.+.+..- -...+.++||+|-+=+.-.+...-..+..+...... .-.+|-++||-
T Consensus 135 -----------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~--~~~~LVl~a~~ 196 (270)
T PRK06731 135 -----------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEP--DYICLTLSASM 196 (270)
T ss_pred -----------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCC--CeEEEEEcCcc
Confidence 113455555544320 112468999999987664432333334444433211 13466788874
No 334
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.48 E-value=3.3 Score=53.33 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=54.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH--HHHHHHHHHcCCcEEEEeCCCcccccchHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY--QQAEVIREQTGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~--Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
+..|++++.|+|||-++.++++.+.-.. + |+..-|. ..+..+.......+..+.+.... ..+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~---~---------~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~---~vdd 100 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSN---G---------PTSDPCGTCHNCISIKNSNHPDVIEIDAASNT---SVDD 100 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcC---C---------CCCCCccccHHHHHHhccCCCCEEEEecccCC---CHHH
Confidence 3589999999999998888776543211 0 1111111 12334444344556655553221 1111
Q ss_pred HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHH
Q 000174 396 WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEF 451 (1931)
Q Consensus 396 w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~ 451 (1931)
.+. +.+..... -...+.+++||||+|.+.. +.++..++.+
T Consensus 101 IR~--------------Iie~~~~~-P~~~~~KVvIIDEah~Ls~-~A~NaLLK~L 140 (491)
T PRK14964 101 IKV--------------ILENSCYL-PISSKFKVYIIDEVHMLSN-SAFNALLKTL 140 (491)
T ss_pred HHH--------------HHHHHHhc-cccCCceEEEEeChHhCCH-HHHHHHHHHH
Confidence 111 11111111 1235789999999999876 3566555443
No 335
>PLN03025 replication factor C subunit; Provisional
Probab=86.45 E-value=2.8 Score=51.59 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++|+++|.|+|||..+...+.++.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999998888776653
No 336
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.31 E-value=3.8 Score=59.29 Aligned_cols=61 Identities=21% Similarity=0.134 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
..+++-|++++..++. +-++|.+..|+|||.+.-..+..+ ..+. ...+..++.++||---+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~-~~l~-e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAV-NMLP-ESERPRVVGLGPTHRAV 897 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHH-HHHh-hccCceEEEEechHHHH
Confidence 4799999999999986 568999999999997754433221 1111 12346799999995443
No 337
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=85.89 E-value=5.8 Score=43.52 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=58.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQR 398 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~ 398 (1931)
..|+.++.|+||+..+...+..++..... .. -+..-.- ...+.......+..+...........
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~---~~----~c~~c~~----c~~~~~~~~~d~~~~~~~~~~~~i~i----- 84 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPN---ED----PCGECRS----CRRIEEGNHPDFIIIKPDKKKKSIKI----- 84 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-C---TT------SSSHH----HHHHHTT-CTTEEEEETTTSSSSBSH-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCC---CC----CCCCCHH----HHHHHhccCcceEEEecccccchhhH-----
Confidence 36999999999999988888876653211 11 2222222 22333333344455443322111111
Q ss_pred hcCCccEEEEcHHHHHHHHhcccc--cccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 399 EFDTKQVLVMTAQILLNILRHSII--KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 399 ~~~~~~IlV~Tpq~L~d~L~~~~l--~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
+.+.+....-.. .....+++||||||.|... ..+.+++ .+..-+ ....++++|-.|.
T Consensus 85 ------------~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-a~NaLLK-~LEepp--~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 85 ------------DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-AQNALLK-TLEEPP--ENTYFILITNNPS 143 (162)
T ss_dssp ------------HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-HHHHHHH-HHHSTT--TTEEEEEEES-GG
T ss_pred ------------HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-HHHHHHH-HhcCCC--CCEEEEEEECChH
Confidence 222222222111 1256899999999999863 4444444 333222 2245555554444
No 338
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.74 E-value=3.3 Score=50.33 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=22.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+++++.+++|+|||..+..++.+++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999988887764
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=85.55 E-value=2.4 Score=49.76 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
-++|++++|+|||..++-.+.+.+.. .+.+++++...
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~-----~g~~vly~s~E 51 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKK-----QGKPVLFFSLE 51 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCceEEEeCC
Confidence 46899999999998888877776653 14568888853
No 340
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=85.55 E-value=1.5 Score=53.64 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+.+.|.+.+..+.. .+++++++||||||-..-.++..+.. ..+..++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~----~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVI----QDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhh----cCCCceEEEEcCCCcc
Confidence 45778888888766 89999999999999555444443321 1234568888888776
No 341
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=85.49 E-value=1.5 Score=53.31 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
+++.|.+.+..+.. .|+|++++||||||-..-.++..+.. ..+..+++.+=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~----~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA----SAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc----CCCCceEEEecCCcccc
Confidence 56788888888877 89999999999998655444433322 12345677777777763
No 342
>PF14954 LIX1: Limb expression 1
Probab=85.32 E-value=1.9 Score=47.28 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHHHc---CCCCCc-ceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHH
Q 000174 1851 QTFTRQTLNDICLRR---NWPMPL-YRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLE 1924 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~---~~~~p~-y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~ 1924 (1931)
.+|-|..|||+=|.+ +-..|. -.++.+..|+..+-|+|=|++-+ +.+.|.=..=+||-+|+++||+.||.
T Consensus 20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPG----GSCFGnfq~C~tkAEARR~AAKiALm 93 (252)
T PF14954_consen 20 DVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPG----GSCFGNFQNCPTKAEARRSAAKIALM 93 (252)
T ss_pred cchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCC----CCccCccccCCcHHHHHhhhHHHHHH
Confidence 478999999987544 333332 22344667877788999898842 22222212227899999999999985
No 343
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.29 E-value=1.3 Score=50.54 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=18.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
++|+++|.|+|||-.|-+.+.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 5899999999999877776543
No 344
>CHL00181 cbbX CbbX; Provisional
Probab=85.19 E-value=3.9 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
++++.+++|+|||.++-..+..+.
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999998876543
No 345
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.17 E-value=2.8 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
-+|++++.|+|||.++.++++.+.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 359999999999999988877653
No 346
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=84.90 E-value=12 Score=49.44 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCCCCCcHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
....-|.|+=.+-|..+.. +-.++..|=|.|||.+..+.+..++.. .+.++++.+|...-+.+..+.++..
T Consensus 165 ~np~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-----~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 165 FNPEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-----LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred cCcCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-----cCCeEEEECCChhhHHHHHHHHHHH
Confidence 4445566766666666654 557888999999998887766655532 2467999999998888888777765
Q ss_pred c
Q 000174 375 T 375 (1931)
Q Consensus 375 ~ 375 (1931)
+
T Consensus 240 l 240 (752)
T PHA03333 240 V 240 (752)
T ss_pred H
Confidence 4
No 347
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=84.50 E-value=2.9 Score=56.40 Aligned_cols=97 Identities=15% Similarity=0.222 Sum_probs=74.3
Q ss_pred CCCHHHHHH-HHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSL-IKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~L-i~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-... +-++... ..+.+++|-++++.-|..+++.++++-.-.++++..++| +++..+|.++++...+|
T Consensus 265 TGSGKT~va~l~il~~~--~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg-----~~~~~~r~~~~~~i~~g 337 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAI--EAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTG-----SLKGKRRKELLETIASG 337 (630)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEec-----CCCHHHHHHHHHHHhCC
Confidence 456676543 3333333 246789999999999999988887642213689999999 88999999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEE
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+.+|+|+|. .+.+.+.+.++.+||.
T Consensus 338 ~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 338 QIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCCEEEecHHHHhccccccccceEEE
Confidence 999999995 4556778888888773
No 348
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=84.31 E-value=4.6 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=19.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++++++||+|||.....++..+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999888777665543
No 349
>PRK12678 transcription termination factor Rho; Provisional
Probab=84.23 E-value=3.9 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.++|.++.|+|||.+...++..+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~ 441 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAIT 441 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHh
Confidence 7889999999999998777555443
No 350
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.21 E-value=2.9 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++..+++.+.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998887664
No 351
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=84.20 E-value=2.9 Score=54.43 Aligned_cols=68 Identities=9% Similarity=-0.046 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 306 PYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 306 ~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
|+|+-++..++. +.+++..+=|-|||.....++...+--. ...+..++++++++.-+....+.++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~--g~~~~~i~~~A~~~~QA~~~f~~~~~~i 78 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD--GEPGAEIYCAANTRDQAKIVFDEAKKMI 78 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC--CccCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 678888887763 3578899999999976666554433211 2235679999999998888888887754
No 352
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.13 E-value=2 Score=58.10 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.++++.+.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999988877653
No 353
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=83.87 E-value=7.1 Score=58.98 Aligned_cols=113 Identities=16% Similarity=0.156 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
..+.+-|++++..++. +=.||.+..|+|||.+.-.++ .+++. .+.+|++++||---+. ++.+-++..
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~-~~~~~-----~G~~V~~lAPTgrAA~----~L~e~~g~~ 497 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLL-HLASE-----QGYEIQIITAGSLSAQ----ELRQKIPRL 497 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-HHHHh-----cCCeEEEEeCCHHHHH----HHHHHhcch
Confidence 4689999999999887 347899999999997655443 33332 3567999999965444 444433322
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
... ...|...+... .-..|.+.|+ +....+..-++||||||-.+..
T Consensus 498 A~T-----------i~~~l~~l~~~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~ 543 (1960)
T TIGR02760 498 AST-----------FITWVKNLFND-DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN 543 (1960)
T ss_pred hhh-----------HHHHHHhhccc-ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH
Confidence 111 11232221111 1223444443 2223456678999999987744
No 354
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=83.87 E-value=3.7 Score=57.15 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCCHHHHHHHH-HHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSLIK-ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~Li~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-...+. ++... ..+.+++|.++|+.-|...++.++..-.-.++++..++| ..+..++.++++.+++|
T Consensus 481 TGsGKT~val~a~l~al--~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg-----~~~~~e~~~~~~~l~~g 553 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAV--LDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSR-----FRSAKEQNEILKELASG 553 (926)
T ss_pred CCccHHHHHHHHHHHHH--HhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEec-----cccHHHHHHHHHHHHcC
Confidence 44666654332 22222 235789999999999999998887642213567888998 78888999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEE
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+++|+|+|. .+...+.+.++.+||.
T Consensus 554 ~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 554 KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CceEEEchHHHhhCCCCcccCCEEEe
Confidence 999999995 5556677777777764
No 355
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=83.72 E-value=3.5 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|++++.|+|||.++.++.+.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999887664
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=83.71 E-value=7 Score=52.73 Aligned_cols=115 Identities=16% Similarity=0.083 Sum_probs=62.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-h-hHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-V-PLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~-~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+.++++||+|||-....+...+... . ++++|.++.- | + .-+.|+ ..+.+..++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~~---~-G~kkV~lit~Dt~RigA~eQL-~~~a~~~gvpv----------------- 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVAR---E-GADQLALLTTDSFRIGALEQL-RIYGRILGVPV----------------- 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHHH---c-CCCeEEEecCcccchHHHHHH-HHHHHhCCCCc-----------------
Confidence 5689999999988777766544321 1 2223444332 2 1 122322 22223233221
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
.++.+|..+.+.+.. +.+.++|+||=+=+.-.+......+..+... ....-.+|.|+||-
T Consensus 246 --------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~--~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 --------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGV--GRPVRRLLLLNAAS 305 (767)
T ss_pred --------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhcc--CCCCeEEEEECCCC
Confidence 234477777777764 4567899999887765432333333333321 12234578888884
No 357
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=83.69 E-value=3.9 Score=45.41 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=55.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
.+++++|.||||..-+..+.+... .+.++++..|... .. +.+..+.+-.+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~------~g~~v~vfkp~iD----------~R--~~~~~V~Sr~G~----------- 57 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE------AGMKVLVFKPAID----------TR--YGVGKVSSRIGL----------- 57 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH------cCCeEEEEecccc----------cc--cccceeeeccCC-----------
Confidence 478999999999966665554433 3567898888531 11 122222222111
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...-++|-...-+.+.+....-... ++.|.+|||+-+..
T Consensus 58 -~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~ 96 (201)
T COG1435 58 -SSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDE 96 (201)
T ss_pred -cccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCH
Confidence 2234667777777777764322222 88999999998755
No 358
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.61 E-value=4.5 Score=54.99 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|....+..+.... ..+.++||.++++..+..+.+.|++. -+.++..+|| +++..+|.+...+.++|+
T Consensus 171 TGSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~v~~~~s-----~~s~~~r~~~~~~~~~g~ 241 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR---FGAPVAVLHS-----GLSDGERLDEWRKAKRGE 241 (679)
T ss_pred CCChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCCEEEEEC-----CCCHHHHHHHHHHHHcCC
Confidence 45778877776665542 23678999999999999999988763 2468999999 899999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcC
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFD 806 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD 806 (1931)
.+|+|+|.-+-- +.+.++.+||.-+
T Consensus 242 ~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 242 AKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCEEEeccHHhc-ccccCCCEEEEEC
Confidence 999999964321 3444555555433
No 359
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=83.59 E-value=3.5 Score=56.75 Aligned_cols=90 Identities=11% Similarity=0.107 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..|++-|++++.. ..++++|.+..|||||.+.+.-|.+++... .-...++|+|+-|+.-+....+.+.+.++-
T Consensus 3 ~~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~--~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~---- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK--NVAPWNILAITFTNKAAREMKERVEKLLGP---- 75 (726)
T ss_pred cccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC--CCCHHHeeeeeccHHHHHHHHHHHHHHhcc----
Confidence 3589999999975 358899999999999999999888887632 112356999999988887777777664321
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
....|.|+|...|...+
T Consensus 76 -------------------~~~~~~i~TFHs~~~~i 92 (726)
T TIGR01073 76 -------------------VAEDIWISTFHSMCVRI 92 (726)
T ss_pred -------------------ccCCcEEEcHHHHHHHH
Confidence 11257799998887543
No 360
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=83.37 E-value=4.6 Score=59.36 Aligned_cols=62 Identities=21% Similarity=0.086 Sum_probs=43.5
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
..+++-|++++..++. +-++|.+..|+|||.+.-.++. .+..+. ...+..++.++||---+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~-~~~~l~-~~~~~~V~glAPTgrAAk 1030 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMS-AVNTLP-ESERPRVVGLGPTHRAVG 1030 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH-HHHHhh-cccCceEEEECCcHHHHH
Confidence 4689999999999987 4578999999999977544333 222211 123456889999964443
No 361
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.16 E-value=4 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.++++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999988877654
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=83.02 E-value=17 Score=44.62 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=63.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+.+.+++|+|||-.+..++..+.. .+.+|+++. .+ +.-+.+|........++.+... ....
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~------~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~--------- 179 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKA------QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGA--------- 179 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh------cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCC---------
Confidence 568899999999877776654432 234566654 33 3333333333333334333221 1111
Q ss_pred hhcCCccEEEEcH-HHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc----CCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTA-QILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT----SKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tp-q~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~----~~~~~p~iLgLTATP 470 (1931)
.| ....+.+.. ....++++||+|=+-++..+......++.+.... +....-.+|-++||-
T Consensus 180 -----------dpa~~v~~~l~~--~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 180 -----------DPASVAFDAIQA--AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred -----------CHHHHHHHHHHH--HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 11 111222221 1235689999999988765444444455554432 222234678899984
No 363
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=83.01 E-value=5.3 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.+|+++|.|+|||..+-++++.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3589999999999999998877654
No 364
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=82.95 E-value=5.4 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=20.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+|++++.|+|||.++..+++.+.
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 479999999999999988877654
No 365
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=82.83 E-value=5.3 Score=48.74 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..++|+|..++..+.. .-.++.++.|+||+..+...+..++-
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 4688999999888764 23789999999999988888776654
No 366
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=82.76 E-value=3.1 Score=49.34 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=54.6
Q ss_pred EEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcC
Q 000174 322 AFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFD 401 (1931)
Q Consensus 322 l~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~ 401 (1931)
++++.|+|||..++.++..........+...+|++|--....-.+-..++.+.+++. . +..++
T Consensus 43 i~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~--------------~---~~~l~ 105 (256)
T PF08423_consen 43 IVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLD--------------P---EEILD 105 (256)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS---------------H---HHHHH
T ss_pred EEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccc--------------c---chhhh
Confidence 899999999988887665443222223446789999876554333233333322210 0 11223
Q ss_pred CccEE-EEcHHHHHHHHhcc--cccccceeEEEEeCCCcc
Q 000174 402 TKQVL-VMTAQILLNILRHS--IIKMEAINLLILDECHHA 438 (1931)
Q Consensus 402 ~~~Il-V~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~ 438 (1931)
+..|. +.+..-+...+.+- .+.-.+++|||+|-.=.+
T Consensus 106 ~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 106 NIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp TEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 32322 34556666655441 223367999999986543
No 367
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=82.72 E-value=1.3 Score=49.63 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+|+.+|+|+|||-....++++++.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 57899999999999999888877764
No 368
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=82.66 E-value=2.5 Score=51.31 Aligned_cols=57 Identities=30% Similarity=0.302 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
+.+-|.+.+..+.+ .+++++++||||||-..-.++..+.. ..+..+++.+=.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~----~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAK----NDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc----cCCCceEEEECCchhhc
Confidence 45667777777776 89999999999999766555433221 12345788888887773
No 369
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=82.45 E-value=3.1 Score=60.39 Aligned_cols=138 Identities=14% Similarity=0.084 Sum_probs=88.8
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY 382 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~ 382 (1931)
+.|+-|.++|.. ..+|++|.+.-|||||.+.+--+.+++.. .....++++|+=|+.-+....+.+++.+.-....
T Consensus 1 ~~t~~Q~~ai~~-~~~~~lv~A~AGsGKT~~lv~r~~~~~~~---~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 1 QWTDEQWQAIYT-RGQNILVSASAGSGKTAVLVERIIKKILR---GVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCCHHHHHHHhC-CCCCEEEEecCCCcHHHHHHHHHHHHHhc---CCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 368899999973 34899999999999999988877665542 1223469999999999888777777754211110
Q ss_pred eCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccce--eEEEEeCCCc--ccCCCcHHHHHHHHHh
Q 000174 383 CGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAI--NLLILDECHH--AVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 383 ~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i--~lLV~DEaH~--~~~~~~~~~im~~~~~ 453 (1931)
.. ....|.+.+ .-...-|+|-..+...+-+.+...-++ ++=|.||... +.. ..+...+..+|.
T Consensus 76 ----~p---~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~-e~~~~~~e~~y~ 143 (1232)
T TIGR02785 76 ----EP---NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIK-EVVDDVFEEEYY 143 (1232)
T ss_pred ----Cc---hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHH-HHHHHHHHHHHh
Confidence 01 112233333 244567899998886654443322223 4667898775 333 366666666664
No 370
>PTZ00293 thymidine kinase; Provisional
Probab=82.30 E-value=3.7 Score=46.72 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=25.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.++++||+||||...+..+.+... .+.+++++-|.
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~------ag~kv~~~kp~ 41 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY------SEKKCVVIKYS 41 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH------cCCceEEEEec
Confidence 368999999999776666655433 24668888885
No 371
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=82.29 E-value=1.8 Score=55.93 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=89.3
Q ss_pred cCCCCCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHH-HHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 298 KMPEEQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLI-AVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTli-all~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
......+...|.+++-.+.+ -..+|.+.-|.||-.. +.++...+++ +++++|.+.-+..|-.
T Consensus 259 ~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk------GRKrAlW~SVSsDLKf 332 (1300)
T KOG1513|consen 259 SIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK------GRKRALWFSVSSDLKF 332 (1300)
T ss_pred cCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc------ccceeEEEEecccccc
Confidence 34556788999999877654 2468888888888432 2333334433 3567888888878877
Q ss_pred HHHHHHHHH--cCCcEEEE--------eCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc--cc----c-cc----
Q 000174 366 QQAEVIREQ--TGYVVGHY--------CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH--SI----I-KM---- 424 (1931)
Q Consensus 366 Q~~~~l~~~--~~l~v~~~--------~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~--~~----l-~l---- 424 (1931)
.-.+-++.. +++.|..+ .+..+.. -.--|+++||..|...-.. +. + .+
T Consensus 333 DAERDL~DigA~~I~V~alnK~KYakIss~en~n-----------~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~ 401 (1300)
T KOG1513|consen 333 DAERDLRDIGATGIAVHALNKFKYAKISSKENTN-----------TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWC 401 (1300)
T ss_pred chhhchhhcCCCCccceehhhcccccccccccCC-----------ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHh
Confidence 666667663 23443332 1211110 1346999999988754331 10 0 11
Q ss_pred -cce-eEEEEeCCCcccCCCc--------HHHHHHHHHhhcCCCCCcEEEEEeec
Q 000174 425 -EAI-NLLILDECHHAVKKHP--------YSLVMSEFYHTTSKEKRPSVFGMTAS 469 (1931)
Q Consensus 425 -~~i-~lLV~DEaH~~~~~~~--------~~~im~~~~~~~~~~~~p~iLgLTAT 469 (1931)
.++ ++|||||||++.+-.+ ..+.+-++-... +..|++-.|||
T Consensus 402 Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~L---P~ARVVYASAT 453 (1300)
T KOG1513|consen 402 GEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKL---PNARVVYASAT 453 (1300)
T ss_pred hhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhC---CCceEEEeecc
Confidence 222 4999999999986211 122222333333 34789999999
No 372
>PRK10867 signal recognition particle protein; Provisional
Probab=82.25 E-value=7.3 Score=49.58 Aligned_cols=56 Identities=27% Similarity=0.236 Sum_probs=33.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-C-ChhHHHHHHHHHHHHcCCcEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-P-KVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-P-T~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
+++++++|+|||.++.-++.++... .+.+++++. - .++-+..|...+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~-----~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK-----KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-----cCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 5789999999999888887765442 133455544 2 344333333334444565544
No 373
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.20 E-value=5.1 Score=52.37 Aligned_cols=94 Identities=13% Similarity=0.136 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|-...+..+.... ..+.++||.++++.-+..+++.|++. -+..+..+|| +++..+|.++..+.++|+
T Consensus 6 TGsGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs-----~~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHS-----GLSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CCCCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEEC-----CCCHHHHHHHHHHHHcCC
Confidence 45678877776665542 34678999999999999999888763 2457889999 899999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEE
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~ 804 (1931)
.+|+|+|..+-- +-+.++.+||.
T Consensus 77 ~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 77 ILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred CCEEECChHHHc-CcccCCCEEEE
Confidence 999999965321 23444555543
No 374
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.88 E-value=7.3 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|+++|.|+|||.++..++..+.
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 49999999999999888777654
No 375
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=81.65 E-value=4.1 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+.++.|+|||.++..+++.+.-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 489999999999999888776644
No 376
>PRK06904 replicative DNA helicase; Validated
Probab=81.64 E-value=10 Score=49.11 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=61.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eC-CCcccccchHH-
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CG-EMGQDFWDAQR- 395 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G-~~~~~~~~~~~- 395 (1931)
+||++.||.|||..++-.+.+.+.. .+.+|+|++.. .=..|+...+-. ..++....+ .| ....+.|.+-.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~-----~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA-----SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISS 297 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-----cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHH
Confidence 6789999999999887777666542 24568888765 234555555443 334433222 34 33333333211
Q ss_pred HHhhc-CCccEEE-----EcHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREF-DTKQVLV-----MTAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~-~~~~IlV-----~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+ ....+.| .|+..+.....+-......+++||||=-+.+.
T Consensus 298 a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 298 TVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 11122 2344555 35555554333211112358899999877765
No 377
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=81.53 E-value=4.3 Score=61.22 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHH---HHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVL---LIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall---~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
..+++.|++++..++. +-++|.+..|+|||.+... ++.+.+.. .+..++.++||-.-+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-----~g~~v~glApT~~Aa 1081 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-----EQLQVIGLAPTHEAV 1081 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-----cCCeEEEEeChHHHH
Confidence 5799999999999886 3467899999999977633 33333331 346799999995433
No 378
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=81.48 E-value=5.2 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=18.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++|+++|+|+|||..+-.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988877654
No 379
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=81.21 E-value=4.2 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
..+++++|.|+|||-.|.+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHH
Confidence 45899999999999877766543
No 380
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=81.19 E-value=4 Score=53.59 Aligned_cols=100 Identities=20% Similarity=0.297 Sum_probs=72.8
Q ss_pred EEEEEeehhHHHHHHHHHhcCCCCC-CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----ccccC-CCC
Q 000174 724 AIIFVERVVAALVLPKVFAELPSLS-FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----VAEEG-LDI 796 (1931)
Q Consensus 724 ~IIFv~~r~ta~~L~~~L~~~~~l~-~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----VaeeG-lDi 796 (1931)
+||+++||.-|..+++.+..+.... ++++..++| +++...|...++ .| .+|||||+ .+.+| +|+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~G-----G~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l 172 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYG-----GVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDL 172 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEEC-----CCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcch
Confidence 9999999999999999988765434 688999999 888777665544 46 99999996 56666 888
Q ss_pred CCCCEEEE------cCCCCCHHHHHHhhccCCCCCCcEEEEEec
Q 000174 797 RQCNVVIR------FDLAKTVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 797 p~~~lVI~------fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
..+.++|. .|+ ....-+..+.+.-....+..+|..+
T Consensus 173 ~~v~~lVlDEADrmLd~--Gf~~~i~~I~~~~p~~~qtllfSAT 214 (513)
T COG0513 173 SGVETLVLDEADRMLDM--GFIDDIEKILKALPPDRQTLLFSAT 214 (513)
T ss_pred hhcCEEEeccHhhhhcC--CCHHHHHHHHHhCCcccEEEEEecC
Confidence 88888874 444 5555555555554444445555443
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=81.17 E-value=13 Score=47.08 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=34.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC--ChhHHHHHHHHHHHHcCCcEEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP--KVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP--T~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
+++++++|+|||-.+..++..+.. .+.+|++++- -++-+.+|.+......++++..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~------~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~ 160 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR------KGFKPCLVCADTFRAGAFDQLKQNATKARIPFYG 160 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCCEEEEcCcccchhHHHHHHHHhhccCCeEEe
Confidence 578999999999877776654432 1334555543 2555555655555555655543
No 382
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.13 E-value=0.86 Score=50.68 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=29.5
Q ss_pred cCCccEEEEcHHHHHHHHhccccc--ccceeEEEEeCCCcccC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIK--MEAINLLILDECHHAVK 440 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~--l~~i~lLV~DEaH~~~~ 440 (1931)
....+|||+++.-|++......+. ...-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 457899999999999865443332 23446999999999965
No 383
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=80.92 E-value=7.1 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|++++.|+|||.++..++..+..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcC
Confidence 489999999999999888776643
No 384
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.88 E-value=6.8 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=21.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..+|++++.|+|||..+..+++.+.-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 34689999999999999998876643
No 385
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.85 E-value=3.7 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..++.++.|+|||..+...++.++.
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4799999999999888887776654
No 386
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=80.70 E-value=17 Score=45.75 Aligned_cols=117 Identities=13% Similarity=0.105 Sum_probs=60.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++.+++|+|||..+..++.+.... .+.++.++. .+ +..+..|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~-----~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~----------------- 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH-----MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY----------------- 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----------------
Confidence 6689999999998888877654321 123343333 32 33333333333232232221
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC-CCCcEEEEEeecCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK-EKRPSVFGMTASPV 471 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~-~~~p~iLgLTATP~ 471 (1931)
.+..+..+.+.+. -...++||+|=+-+...+......+..+...... ...-.+|-|+||-.
T Consensus 284 --------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~ 345 (432)
T PRK12724 284 --------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS 345 (432)
T ss_pred --------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC
Confidence 1111223333332 2567899999876664433444455555543311 12346788999854
No 387
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.26 E-value=6.4 Score=49.36 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+|+.+|.|+|||..+...+..+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 58999999999999888876653
No 388
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=80.13 E-value=6 Score=48.78 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
++|+|......+.. +-.++.++.|.|||..+...+..++-
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46888888777764 34689999999999998888776654
No 389
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.96 E-value=5.5 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.++++.+.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 48999999999999999877664
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=79.93 E-value=7.8 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++|+.+|+|+|||..+-.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988877654
No 391
>PRK04195 replication factor C large subunit; Provisional
Probab=79.93 E-value=5.2 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+++++|+|+|||..+-.++.+
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999888776554
No 392
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.92 E-value=8.5 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++|.|+|||.++-.+++.+.
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 68899999999999988876654
No 393
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=79.75 E-value=22 Score=42.64 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=60.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CC-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PK-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++.+++|+|||-.+..++..+.. .+.+++++. .+ +.-+.+|...+....++.+ +......+
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~------~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~--~~~~~~~d-------- 138 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK------QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV--IKQKEGAD-------- 138 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE--EeCCCCCC--------
Confidence 567899999999888887765533 234566665 32 3323333333333344332 22221111
Q ss_pred hhcCCccEEEEcH-HHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC----CCCCcEEEEEeec
Q 000174 398 REFDTKQVLVMTA-QILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS----KEKRPSVFGMTAS 469 (1931)
Q Consensus 398 ~~~~~~~IlV~Tp-q~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~----~~~~p~iLgLTAT 469 (1931)
| ....+.+.. ....++++||+|=+-+...+......++.+..... ....-.+|-++||
T Consensus 139 ------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 1 111222221 12356789999988776543333344455544332 1122356777777
No 394
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=79.52 E-value=4.7 Score=50.91 Aligned_cols=37 Identities=27% Similarity=0.220 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+......++..+.. +++|+.+++|+|||.++-.+...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 44444555555555 89999999999999988766543
No 395
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=79.29 E-value=7.8 Score=49.31 Aligned_cols=133 Identities=11% Similarity=0.014 Sum_probs=71.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh-HHHHHHHHHHHH---cCCcEEEEeCCCcccccchHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP-LVYQQAEVIREQ---TGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~-Lv~Q~~~~l~~~---~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
.++.+..|||||.+..+.+...+... .++.+++++-|+.. |-.-....+... +++....-...... .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~---~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-~----- 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN---KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-E----- 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc---CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc-E-----
Confidence 57899999999988887555444431 14577999999876 433344455432 23321111111100 0
Q ss_pred HHhhcC-CccEEEEcH-HHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 396 WQREFD-TKQVLVMTA-QILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 396 w~~~~~-~~~IlV~Tp-q~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
+ .... +..|++..- ..-.+ + .....+.++.+|||..+... .|..++..+.. + .....+.+|.+|..
T Consensus 75 i-~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~~-~~~~l~~rlr~--~--~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 75 I-KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTFE-DIKELIPRLRE--T--GGKKFIIFSSNPES 142 (396)
T ss_pred E-EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCHH-HHHHHHHHhhc--c--CCccEEEEEcCcCC
Confidence 0 0012 334554333 11111 1 12344799999999999653 66666654321 1 11225788999974
No 396
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=79.21 E-value=5.8 Score=50.86 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=57.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-HHcCCcEEEE-eCCCcccccch-HH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-EQTGYVVGHY-CGEMGQDFWDA-QR 395 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-~~~~l~v~~~-~G~~~~~~~~~-~~ 395 (1931)
=++|++.+|+|||..++..+.+.... .+.+|+|+.-.- =..|+...+- ...++....+ .|......|.. ..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~-----~g~~v~~fSlEm-~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~ 269 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALR-----EGKPVLFFSLEM-SAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 46889999999999999888776532 245688887431 2334443332 2334433222 23332222221 11
Q ss_pred HHhhcCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREFDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
+...+.+..+.|. |...+...+.+-......+++||||=.|.+.
T Consensus 270 ~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 270 AVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 1112233344442 3334433332211111257788888766664
No 397
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=78.89 E-value=6.3 Score=51.46 Aligned_cols=95 Identities=16% Similarity=0.265 Sum_probs=76.4
Q ss_pred CHH-HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 703 TPK-VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 703 s~K-v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
|.| +..++..+..+ ..+.++..-++|---|...+..+.+.-.--++++..++| .+..++|++++++..+|++
T Consensus 294 SGKTvVA~laml~ai--~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG-----~~kgk~r~~~l~~l~~G~~ 366 (677)
T COG1200 294 SGKTVVALLAMLAAI--EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTG-----SLKGKARKEILEQLASGEI 366 (677)
T ss_pred CCHHHHHHHHHHHHH--HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeec-----ccchhHHHHHHHHHhCCCC
Confidence 344 34555556554 467899999999888887777666642224689999999 9999999999999999999
Q ss_pred eEEEEec-ccccCCCCCCCCEEEE
Q 000174 782 TLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 782 ~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
+|+|.|- ...+.+++.+.-+||.
T Consensus 367 ~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 367 DIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred CEEEEcchhhhcceeecceeEEEE
Confidence 9999994 5788999999999984
No 398
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=78.79 E-value=1.4 Score=52.88 Aligned_cols=143 Identities=19% Similarity=0.216 Sum_probs=79.5
Q ss_pred CCCCcHHHHHHHHHHhccC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKKKN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
....++-|..-++.+.+.+ ++..+|-|+|||+.+.....+.+.. +.-.++|.-=|-+++ |.+-
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~----~~v~rIiLtRPaVEA------------GEkl 189 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGA----GQVRRIILTRPAVEA------------GEKL 189 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhh----cccceeeecCcchhc------------Cccc
Confidence 4567899999999988865 5678899999999998887776663 334456655564332 4444
Q ss_pred EEEeCCCc--ccccchHHHHhhcCCccEEEEcHHHHHHHHhccccc--------ccce--eEEEEeCCCcccCCCcHHHH
Q 000174 380 GHYCGEMG--QDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIK--------MEAI--NLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 380 ~~~~G~~~--~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~--------l~~i--~lLV~DEaH~~~~~~~~~~i 447 (1931)
+.+-|+.. ++-+.+..++.+.. ++-+......+..+.+. -..+ .+||+||||... ...
T Consensus 190 GfLPGdl~eKvdPylRPLyDAl~d-----~l~~~~~~~~~e~~vIEiAPlAyMRGRTL~dAfVIlDEaQNtT-----~~Q 259 (348)
T COG1702 190 GFLPGDLREKVDPYLRPLYDALYD-----ILGAERVEALDERGVIEIAPLAYMRGRTLNDAFVILDEAQNTT-----VGQ 259 (348)
T ss_pred CcCCCchhhhcccccccHHHHHHH-----HhhHHHHhhhhhcCcEEecchhhhhcCCCCCeEEEEecccccc-----hhh
Confidence 44445443 22222333332211 12223333333333321 1222 389999999843 345
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
|+.|+...--+ -.+-.|+.+.+
T Consensus 260 mKMfLTRiGf~---skmvItGD~tQ 281 (348)
T COG1702 260 MKMFLTRIGFE---SKMVITGDITQ 281 (348)
T ss_pred hceeeeeecCC---ceEEEEcCccc
Confidence 67776644222 12344555543
No 399
>CHL00095 clpC Clp protease ATP binding subunit
Probab=78.79 E-value=6.5 Score=54.81 Aligned_cols=38 Identities=34% Similarity=0.346 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHhc----cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK----KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 305 ~~~Q~eai~~~l~----~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
|.-+.+-+-.++. .|+|+.+|+|+|||.++-.++..+.
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4444444444443 7899999999999999887776654
No 400
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=78.73 E-value=7.3 Score=53.62 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=22.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.|+|+.+++|+|||.++-.++..+..
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999998877766544
No 401
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=78.65 E-value=5.6 Score=45.03 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=24.2
Q ss_pred ceeEEEEeCCCcccCCCcHH-----HHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 426 AINLLILDECHHAVKKHPYS-----LVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 426 ~i~lLV~DEaH~~~~~~~~~-----~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.-.+|||||||...+..... ..+ .++..... ..--++++|-.|..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh-~g~diiliTQ~~~~ 128 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRH-YGWDIILITQSPSQ 128 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCC-TT-EEEEEES-GGG
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCc-CCcEEEEEeCCHHH
Confidence 45799999999988654442 333 33332222 23678888887763
No 402
>PF13173 AAA_14: AAA domain
Probab=78.63 E-value=11 Score=39.58 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=26.4
Q ss_pred ceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 426 AINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 426 ~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
.-.+|||||+|++. .+...++.++...+ .-.+.+|+|-
T Consensus 61 ~~~~i~iDEiq~~~---~~~~~lk~l~d~~~----~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP---DWEDALKFLVDNGP----NIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc---cHHHHHHHHHHhcc----CceEEEEccc
Confidence 56789999999993 57777777776431 1246667763
No 403
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=78.63 E-value=7.5 Score=49.57 Aligned_cols=102 Identities=20% Similarity=0.158 Sum_probs=77.8
Q ss_pred eCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCC
Q 000174 324 LETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDT 402 (1931)
Q Consensus 324 ~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~ 402 (1931)
-.++.||+-..++.+++++.. +-.+++||.+-+.+=+.|...++..+-++.|.++||+..... +.....+. ...
T Consensus 364 elvF~gse~~K~lA~rq~v~~----g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~q-rde~~~~FR~g~ 438 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVAS----GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQ-RDETMERFRIGK 438 (593)
T ss_pred hheeeecchhHHHHHHHHHhc----cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhH-HHHHHHHHhccC
Confidence 346899999999999988874 456789999999999999999998767899999999865432 22222222 236
Q ss_pred ccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 403 KQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 403 ~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
..|+||| +.+.+| +.+..+++||-+..-
T Consensus 439 IwvLicT-----dll~RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 439 IWVLICT-----DLLARG-IDFKGVNLVINYDFP 466 (593)
T ss_pred eeEEEeh-----hhhhcc-ccccCcceEEecCCC
Confidence 7899999 456667 889999999986543
No 404
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=78.42 E-value=3.5 Score=51.63 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=51.1
Q ss_pred eEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec
Q 000174 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 723 k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd 788 (1931)
-++||++||.-|..+...|..+....++++..|+| ++....|+++|++ .-.|+|||.
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G-----GLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG-----GLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeec-----hhHHHHHHHHHhc----CCCEEEecc
Confidence 39999999999999999998876678999999999 9999999999987 456999996
No 405
>PRK10689 transcription-repair coupling factor; Provisional
Probab=78.34 E-value=7.3 Score=55.70 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|-...+...... ...+.+++|.|+++.-|..+++.+++.-...++++..++| ..+..++.++++..++|.
T Consensus 630 TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g-----~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSR-----FRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred CCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEEC-----CCCHHHHHHHHHHHHhCC
Confidence 4566765333221111 1246789999999999999998887532112467888999 788889999999999999
Q ss_pred ceEEEEec-ccccCCCCCCCCEEEE
Q 000174 781 VTLLVATS-VAEEGLDIRQCNVVIR 804 (1931)
Q Consensus 781 ~~vLVaTd-VaeeGlDip~~~lVI~ 804 (1931)
++|+|+|. .+...+.+.++.+||.
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEE
Confidence 99999995 4555566677777663
No 406
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.34 E-value=8.3 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.++++.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998887654
No 407
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.25 E-value=16 Score=45.22 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=53.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-CCh--hHHHHHHHHHHHHcCCcEEEEeCCCcccccchH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-PKV--PLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQ 394 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-PT~--~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~ 394 (1931)
+.+++++++|+|||-....++..+..+ +.++.++. .|- .-+.||...... .++.+
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~------g~~V~lItaDtyR~gAveQLk~yae~-lgvpv--------------- 264 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQ------NRTVGFITTDTFRSGAVEQFQGYADK-LDVEL--------------- 264 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCCccCccHHHHHHHHhhc-CCCCE---------------
Confidence 446799999999998777766554331 23444443 221 123444433322 22221
Q ss_pred HHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 395 RWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 395 ~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
.++.+|.-+.+.+..- -.....++||+|=+=+.-.+...-..+..+..
T Consensus 265 ----------~~~~dp~dL~~al~~l-~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 265 ----------IVATSPAELEEAVQYM-TYVNCVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred ----------EecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 1234666666655431 01246789999987665433233333444443
No 408
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.15 E-value=7.3 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++|.|+|||.++...+..+.
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999998877664
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.12 E-value=19 Score=45.72 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=60.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh-hHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV-PLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRW 396 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~-~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w 396 (1931)
+-+.+.++||+|||-....++...+.. .+.....++.+.+. .=+.+|...+.+.+++.+..+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~---~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v-------------- 254 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIR---HGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI-------------- 254 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC--------------
Confidence 346789999999986666554433221 12223355556552 223344555555555554432
Q ss_pred HhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 397 QREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 397 ~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.++.-+...+. .+.+.+++++|.+=+...+......+..+... ....-.+|.|+||-.
T Consensus 255 -----------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~--~~~~~~~LVl~at~~ 312 (420)
T PRK14721 255 -----------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQC--GTQVKHLLLLNATSS 312 (420)
T ss_pred -----------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhcc--CCCceEEEEEcCCCC
Confidence 22222222232 25677889999863332221222333333221 112245688999843
No 410
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.06 E-value=5.9 Score=51.21 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~ 341 (1931)
+|+++|+|+|||..+-+++..+
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999988877654
No 411
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.71 E-value=5.4 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+|+.++.|+|||.++.++++.+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcc
Confidence 467899999999999999887664
No 412
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.37 E-value=1.9 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.|+++.+|||||||+.|.-+++.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~ 120 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKI 120 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHH
Confidence 79999999999999988877653
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=77.36 E-value=25 Score=44.86 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=35.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe-C-ChhHHHHHHHHHHHHcCCcEEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV-P-KVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv-P-T~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
+++++++|+|||.++.-++..+..+ .+.+++++. - .++-+.+|...+....++++..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~-----~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKK-----QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 6789999999999988887765322 133455544 2 2344444454555556666544
No 414
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=77.32 E-value=4.2 Score=52.81 Aligned_cols=73 Identities=12% Similarity=-0.036 Sum_probs=58.3
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
...+-.-|..|++..+. +=.|+.+|.|+|||++.+.++..++.........-+++++|=|..-+.|....+-.
T Consensus 376 ~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 34455679999999988 77899999999999999999988877532223345799999999999988777664
No 415
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=77.26 E-value=19 Score=44.11 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.+++++++.|+|||.++-..+.++
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999998887766554
No 416
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=77.07 E-value=1.3 Score=53.62 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1848 NGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1848 ~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
+..|..|+..|.++|.+.+...|.|+.+.. -.+.|...|++.+..+. .+.+.+|||.|+|.||..+|....
T Consensus 371 pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~~~~~~~-----ssi~~~n~k~aeq~aa~~~l~~s~ 441 (477)
T KOG2334|consen 371 PAKWDTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATARGQKYN-----SSIWSPNKKSAEQDAAIVALRKSN 441 (477)
T ss_pred CcCCCCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhhhhhhhh-----ccccCcchhhHHHHHHHHHHHhcC
Confidence 334567899999999999999999998764 35789999999877665 556679999999999999997654
No 417
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.05 E-value=8.9 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++..+++.+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999888876653
No 418
>PRK07004 replicative DNA helicase; Provisional
Probab=76.64 E-value=11 Score=48.56 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=60.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-HHcCCcEEE-EeCCCcccccch-HH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-EQTGYVVGH-YCGEMGQDFWDA-QR 395 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-~~~~l~v~~-~~G~~~~~~~~~-~~ 395 (1931)
=+||++.+|+|||..++-.+.+.... .+..++|+... .=..|+...+- ...++.... ..|......|.. ..
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~-----~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~ 288 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVE-----YGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTH 288 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHH-----cCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 36889999999999888887766542 24567777653 12344444443 222333221 134444444432 11
Q ss_pred HHhhcCCccEEE-----EcHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREFDTKQVLV-----MTAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~~~~~IlV-----~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
+...+.+..+.| .|+..+.....+-.-....+++||||=-+.+.
T Consensus 289 a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 289 AVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 222334555665 34444444332211112347899999777765
No 419
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=76.17 E-value=6.3 Score=53.82 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=20.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+|+.+|+|+|||.++-.+.....
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999877665443
No 420
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=76.06 E-value=4.9 Score=49.55 Aligned_cols=43 Identities=21% Similarity=0.081 Sum_probs=28.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
+.|+++.|+|||..++.++..........+...++++|.-.-.
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 4699999999998887665543221111233467899887543
No 421
>PRK08506 replicative DNA helicase; Provisional
Probab=76.03 E-value=13 Score=48.36 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=61.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eCCCcccccch-HH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CGEMGQDFWDA-QR 395 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G~~~~~~~~~-~~ 395 (1931)
=+||++.||.|||..++-.+.+.+. .+.+|+|++.. .=..|+...+-. ..++....+ .|....+.|.. ..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 266 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALN------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSD 266 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHh------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 3688999999999999988877653 24457787664 234555554433 334432222 24443333321 11
Q ss_pred HHhhcCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREFDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+.+..+.|- |...+...+++-.-....+++||||=-+.+.
T Consensus 267 a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 267 ACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1112233445442 4555554443211112357899999887665
No 422
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=75.92 E-value=24 Score=46.54 Aligned_cols=129 Identities=17% Similarity=0.184 Sum_probs=80.6
Q ss_pred hccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC-----CcEEEEeCCCcccc
Q 000174 316 KKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG-----YVVGHYCGEMGQDF 390 (1931)
Q Consensus 316 l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~-----l~v~~~~G~~~~~~ 390 (1931)
.++-.++..|==.|||.+....|.-.+.. -.+.++++.+|....+....+++...+. ..+..+.|. ...
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~- 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALAT----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TIS- 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHh----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEE-
Confidence 34567889999999998666433323322 2467899999999999998888877532 223333332 110
Q ss_pred cchHHHHhhcC-C--ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEe
Q 000174 391 WDAQRWQREFD-T--KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMT 467 (1931)
Q Consensus 391 ~~~~~w~~~~~-~--~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLT 467 (1931)
-.+. + ..|.++|. -..+.+.-..+++||+|||+-+..+ .+..++ -+... ..|++|.+|
T Consensus 327 -------i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~il-p~l~~----~n~k~I~IS 387 (738)
T PHA03368 327 -------FSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIM-GFLNQ----TNCKIIFVS 387 (738)
T ss_pred -------EEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHH-HHHhc----cCccEEEEe
Confidence 0111 2 24555533 1123355668999999999999874 666666 23322 258888888
Q ss_pred ec
Q 000174 468 AS 469 (1931)
Q Consensus 468 AT 469 (1931)
-|
T Consensus 388 S~ 389 (738)
T PHA03368 388 ST 389 (738)
T ss_pred cC
Confidence 76
No 423
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=75.71 E-value=13 Score=45.43 Aligned_cols=40 Identities=13% Similarity=0.168 Sum_probs=30.9
Q ss_pred CcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.+|+|......+.+ +-.|+.++.|.||+..+...+..++-
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 46888887777654 23578999999999998888776654
No 424
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=75.67 E-value=9 Score=47.87 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
-.|+.+|.|+|||..+...++.++-
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 3789999999999998888887765
No 425
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=75.66 E-value=10 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=21.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|.|+.+|+|+|||.++-.++..+.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHh
Confidence 6899999999999998887766543
No 426
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.62 E-value=16 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=18.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.+.++||+|||-....++..+.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHH
Confidence 56899999999988877765543
No 427
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=75.44 E-value=11 Score=47.68 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
..|+.+|.|+|||..+...+..++
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 378999999999998888776554
No 428
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=75.30 E-value=10 Score=49.20 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+++++++|+|+|||.++-..+.++
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhh
Confidence 689999999999999877766544
No 429
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.25 E-value=18 Score=46.46 Aligned_cols=106 Identities=11% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----cccc
Q 000174 718 HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----VAEE 792 (1931)
Q Consensus 718 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----Vaee 792 (1931)
...+.++||-++||.-|..+...+.++..-..+++.++.| +.+...|.+-++ . .+.|+|||. .+++
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyG-----G~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~ 232 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYG-----GAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEE 232 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeC-----CCCccHHHHHHh---c-CCcEEEeCChHHHHHHHc
Confidence 4457789999999999999999888764434577999999 777666655544 2 378999995 6677
Q ss_pred C-CCCCCCCEEEE--------cCCCCCHHHHHHhhccCCCCCCcEEEEEecC
Q 000174 793 G-LDIRQCNVVIR--------FDLAKTVLAYIQSRGRARKPGSDYILMIERG 835 (1931)
Q Consensus 793 G-lDip~~~lVI~--------fD~p~s~~~yiQr~GRa~R~Gs~~ivlv~~~ 835 (1931)
| +|+..|.++|. .+.-..+...++.++|..| +.+++..+-
T Consensus 233 g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTw 281 (519)
T KOG0331|consen 233 GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATW 281 (519)
T ss_pred CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeec
Confidence 5 78899999884 2233466778888888888 444444433
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=75.12 E-value=5.6 Score=44.52 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=33.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
++|.+++|+|||..++..+.+.+. .+.+++++... +-..|..+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~------~g~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA------RGEPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH------CCCcEEEEECC-CCHHHHHHHHHH
Confidence 689999999999999888777664 24558888754 445556555554
No 431
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=75.00 E-value=4.5 Score=49.29 Aligned_cols=42 Identities=19% Similarity=0.083 Sum_probs=30.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
=+.|++++|+|||..++..+.+... .+.+++|+-..-.+-.+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~------~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDPV 98 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEEcccchhHHH
Confidence 3579999999999998888776654 24568888776555443
No 432
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.94 E-value=5.8 Score=49.03 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++++++|+|+|||..+...+.+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999988866543
No 433
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=74.87 E-value=6.1 Score=45.88 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=28.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
+.|++++|+|||..++..+...+....-.+....++++.....
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 6799999999999888877665432100112356888877543
No 434
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=74.63 E-value=5.9 Score=53.51 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCC-ceeEE-EEccCCCccccHHHHHHHHHHhhcCCceEEEEecc
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSF-VKSAS-LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSV 789 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~-~~~~~-l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdV 789 (1931)
..+.|++|-++|..-+...++.|+.+....+ +.+.. +|| .++.+++++++++|.+|+.+|||+|+.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~-----~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHS-----ALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeecc-----ccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 4568999999998888888877776532122 33333 899 999999999999999999999999974
No 435
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=74.28 E-value=8.3 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++|.|+|||.++..++..+.
T Consensus 43 YLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 43 YLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 58999999999999988876554
No 436
>PF14954 LIX1: Limb expression 1
Probab=74.19 E-value=9.2 Score=42.26 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=49.2
Q ss_pred cchHHHHHHHhhcCCCCCCC-ccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHHH
Q 000174 895 NSAVGLIHFYCSQLPSDRYS-ILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLH 973 (1931)
Q Consensus 895 ~~Ai~ll~~yC~~Lp~d~~~-~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~Akr~AAf~Ac~~L~ 973 (1931)
-|.+..|+.|-..=.+..-. .....-.++.+. ...+.|+|-|+||..|.+-.+. .|+||..|||+||--|-.
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~p--s~~ppyVcyVTLPGGSCFGnfq--~C~tkAEARR~AAKiALm--- 93 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYESVP--SPSPPYVCYVTLPGGSCFGNFQ--NCPTKAEARRSAAKIALM--- 93 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeeccC--CCCCCeEEEEeCCCCCccCccc--cCCcHHHHHhhhHHHHHH---
Confidence 46788888876433221111 111222333332 3346899999999998776553 599999999999966543
Q ss_pred HcCCCCCC
Q 000174 974 EMGAFTDM 981 (1931)
Q Consensus 974 ~~G~ldd~ 981 (1931)
...+|+|
T Consensus 94 -NSvfNEh 100 (252)
T PF14954_consen 94 -NSVFNEH 100 (252)
T ss_pred -HHHHhcC
Confidence 3345554
No 437
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=74.11 E-value=12 Score=45.77 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..++|+|......+.+ +-.++.++.|.||+..+...+..++-
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC 51 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC 51 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3578888888887754 24789999999999888887776654
No 438
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=74.02 E-value=8.9 Score=48.00 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=24.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.-+++++++|+|||......-.+... .++..+++.+..
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~s 151 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTS 151 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccH
Confidence 34799999999999876665544444 234445555544
No 439
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.25 E-value=17 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++|.|+|||.++..++..+.
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999988877654
No 440
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=73.14 E-value=42 Score=43.36 Aligned_cols=171 Identities=17% Similarity=0.079 Sum_probs=92.1
Q ss_pred CCCCcHHHHHHHHHHhc-----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK-----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
...+-|||+-++-.+.. .-.+|..+=|-|||..+..++...+.... ..+..+.|++|+.+-+.+...
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhH
Confidence 46789999999999874 23589999999998544433222222111 234569999999988777777
Q ss_pred HHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHH---HHHHHhc--ccccccceeEEEEeCCCcccCCCcH
Q 000174 370 VIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQI---LLNILRH--SIIKMEAINLLILDECHHAVKKHPY 444 (1931)
Q Consensus 370 ~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~---L~d~L~~--~~l~l~~i~lLV~DEaH~~~~~~~~ 444 (1931)
.++...-..- +.. . ....+.+.+. .+... ....+.+ +...-.+..+.||||-|-..+. +
T Consensus 137 ~ar~mv~~~~-----~l~-------~-~~~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~--~ 200 (546)
T COG4626 137 PARDMVKRDD-----DLR-------D-LCNVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQ--E 200 (546)
T ss_pred HHHHHHHhCc-----chh-------h-hhccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCH--H
Confidence 7765321000 000 0 0000111111 11111 1112222 2344456779999999998763 2
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC
Q 000174 445 SLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS 495 (1931)
Q Consensus 445 ~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~ 495 (1931)
..+.....-....+.++++..|-.+....+. +...+......++.
T Consensus 201 -~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~-----~~q~~~y~k~vl~g 245 (546)
T COG4626 201 -DMYSEAKGGLGARPEGLVVYITTSGDPPAGV-----FKQKLQYAKDVLDG 245 (546)
T ss_pred -HHHHHHHhhhccCcCceEEEEecCCCCCccH-----HHHHHHHHHHHhcC
Confidence 2333333333333457888887765443332 33344455555553
No 441
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=72.79 E-value=7.2 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=21.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.+|++++.|+|||..+.++++.+.-
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCc
Confidence 4899999999999999998877643
No 442
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=72.75 E-value=9.4 Score=45.44 Aligned_cols=115 Identities=10% Similarity=0.154 Sum_probs=61.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH-HHHHHHHcCCcEEEEe-CCCcccccchH-HH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ-AEVIREQTGYVVGHYC-GEMGQDFWDAQ-RW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~-~~~l~~~~~l~v~~~~-G~~~~~~~~~~-~w 396 (1931)
++|++.||.|||..++-.+.+.+.. .+..|++++..-.- .|. .+.+....++....+. |....+.|..- ..
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~-----~~~~vly~SlEm~~-~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALN-----GGYPVLYFSLEMSE-EELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-----TSSEEEEEESSS-H-HHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHh-----cCCeEEEEcCCCCH-HHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 6899999999999999988887763 24679999975222 222 2233333444332222 22222222210 00
Q ss_pred HhhcCCccEEE-E----cHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QREFDTKQVLV-M----TAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~~~~IlV-~----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
...+....+.| . |+..+.+.+..-......+++||+|=.|.+..
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 11122333333 3 44455544433111226788999998888765
No 443
>PRK09183 transposase/IS protein; Provisional
Probab=72.62 E-value=14 Score=44.05 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=29.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
.++++.+|+|+|||..+..+...... .+..++|+. ...|+.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~------~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR------AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEe-HHHHHHH
Confidence 78999999999999888877554433 234566654 3456544
No 444
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.35 E-value=14 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++..++..+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 58999999999999998877654
No 445
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=72.20 E-value=25 Score=43.13 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=16.2
Q ss_pred CEEE-EeCCCchHHHHHHHHHH
Q 000174 319 NTIA-FLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 319 n~Il-~~~TGsGKTliall~i~ 339 (1931)
++++ ++++|+|||..+.....
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4555 89999999987766644
No 446
>PRK08006 replicative DNA helicase; Provisional
Probab=72.14 E-value=14 Score=47.92 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=59.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eCCCcccccchHH-H
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CGEMGQDFWDAQR-W 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G~~~~~~~~~~~-w 396 (1931)
+||++.+|.|||..++-.+.+.... .+.+|+|....- =..|+...+-. ..++....+ .|....+.|.+-. .
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~-----~g~~V~~fSlEM-~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a 300 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML-----QDKPVLIFSLEM-PGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGT 300 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-----cCCeEEEEeccC-CHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 6889999999999998888776542 245688887642 23445544443 234333222 2444333333211 1
Q ss_pred Hhhc-CCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 397 QREF-DTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 397 ~~~~-~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
...+ ....+.|- |+.-+.....+-......+++||||=-|.+.
T Consensus 301 ~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 301 MGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 1111 33444443 4444443332211111257888888766554
No 447
>PRK10865 protein disaggregation chaperone; Provisional
Probab=71.95 E-value=12 Score=52.40 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=21.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|.|+.+|+|+|||.++-.++..+.
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999887766543
No 448
>PRK05748 replicative DNA helicase; Provisional
Probab=71.86 E-value=23 Score=45.77 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=61.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-HHcCCcEE-EEeCCCcccccch-HH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-EQTGYVVG-HYCGEMGQDFWDA-QR 395 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-~~~~l~v~-~~~G~~~~~~~~~-~~ 395 (1931)
-++|++.||+|||..++-.+.+.+.. .+..|+|+... .-..|+...+- ...++... +..|......|.. ..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~-----~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~ 278 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATK-----TDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTI 278 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHh-----CCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 36889999999999998888776542 24567777653 23345555553 33333322 1233333333321 11
Q ss_pred HHhhcCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREFDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+.+..+.|. |+..+...+.+-......+++||||=-|.+.
T Consensus 279 a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 279 AMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1122334445543 4444544333211111268899999888775
No 449
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=71.34 E-value=15 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++|.|+|||.++.++++.+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 68999999999999998877654
No 450
>PRK14873 primosome assembly protein PriA; Provisional
Probab=71.25 E-value=16 Score=49.26 Aligned_cols=97 Identities=14% Similarity=0.034 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.|.|.+..++++.... ..+.++||.++....+..+.+.|+.. +..-.+..+|+ .++..+|.+...+.++|+.
T Consensus 170 GSGKTevyl~~i~~~l-~~Gk~vLvLvPEi~lt~q~~~rl~~~--f~~~~v~~lhS-----~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 170 GEDWARRLAAAAAATL-RAGRGALVVVPDQRDVDRLEAALRAL--LGAGDVAVLSA-----GLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred CCcHHHHHHHHHHHHH-HcCCeEEEEecchhhHHHHHHHHHHH--cCCCcEEEECC-----CCCHHHHHHHHHHHhCCCC
Confidence 3678888888887752 34678999999999999999988863 12256889999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCC
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDL 807 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~ 807 (1931)
.|+|.|..+-- .=+++..+||..|-
T Consensus 242 ~IViGtRSAvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 242 RVVVGTRSAVF-APVEDLGLVAIWDD 266 (665)
T ss_pred cEEEEcceeEE-eccCCCCEEEEEcC
Confidence 99999976522 34445556665544
No 451
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=71.21 E-value=18 Score=41.43 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=27.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+.+++++|+|||..++..+.+... .+.+++++.-.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~------~g~~v~yi~~e 49 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAAR------QGKKVVYIDTE 49 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh------CCCeEEEEECC
Confidence 578999999999999887776654 23567877775
No 452
>PHA00729 NTP-binding motif containing protein
Probab=70.95 E-value=16 Score=42.04 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++.+++|+|||..+..++..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999998888777654
No 453
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=70.78 E-value=14 Score=47.65 Aligned_cols=114 Identities=13% Similarity=0.159 Sum_probs=57.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eCCCcccccchH-H
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CGEMGQDFWDAQ-R 395 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G~~~~~~~~~~-~ 395 (1931)
=++|++.+|+|||..++-.+.+.+.. .+..|+|++..-. ..|....+-. ..++....+ .|......|..- .
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~-----~g~~vl~~SlEm~-~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~ 270 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIK-----EGKPVAFFSLEMS-AEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTS 270 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-----CCCeEEEEeCcCC-HHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHH
Confidence 36889999999999888887766542 2456888876432 2344443332 234432222 233322222110 0
Q ss_pred HHhhcCCccEEE-----EcHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 396 WQREFDTKQVLV-----MTAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 396 w~~~~~~~~IlV-----~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
....+.+..+.| .|...+...+..- ..-..+++||||=.+.+.
T Consensus 271 a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 271 AAGKLSEAPLYIDDTPGLTITELRAKARRL-KREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHH-HHhcCCCEEEEcchHhcC
Confidence 011122334444 2444444433321 111347888888776654
No 454
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=70.55 E-value=10 Score=46.61 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=27.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
+.|++++|+|||..++.++..........+.+..+++|.-.-
T Consensus 105 tei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 105 TEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred EEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 579999999999988887765443211112234688887543
No 455
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.54 E-value=15 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|+++|.|+|||..+..+++.+.
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999988877654
No 456
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=70.37 E-value=28 Score=38.45 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+++.+++|+|||..+...+..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578899999999988887765543
No 457
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=70.34 E-value=5.2 Score=48.76 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=31.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
+.|++|.|+|||..++..+.+... .+.+++|+...-.+-.+
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~------~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQK------LGGTVAFIDAEHALDPV 98 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCCEEEECccccHHHH
Confidence 579999999999988888776544 24568899887666544
No 458
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=70.10 E-value=13 Score=43.45 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=26.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+.++++.|+|||..++.++...+....-.+....++++.-.
T Consensus 22 ~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 22 TEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred EEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 58999999999998888765533211001123567887754
No 459
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=69.98 E-value=7.2 Score=45.10 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=30.6
Q ss_pred EcHHHHHHHHhcccccccceeEEEEeCCCccc-C---CCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 408 MTAQILLNILRHSIIKMEAINLLILDECHHAV-K---KHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 408 ~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~-~---~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
.+...+++.+..... + -+|||||+|.+. . ...+...+..+....... ....+.+++|.
T Consensus 104 ~~l~~~~~~l~~~~~---~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGK---K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHC---C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCC---c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CCceEEEECCc
Confidence 344555555544211 1 789999999999 2 234555555565553222 23445566664
No 460
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.97 E-value=12 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|++++.|+|||.++.+++..+.
T Consensus 41 yLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 41 FLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 58999999999999988877654
No 461
>PRK09354 recA recombinase A; Provisional
Probab=69.83 E-value=7.1 Score=48.01 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=31.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
+.|++++|+|||..++..+.+... .+..++||...-.+-.
T Consensus 63 teI~G~~GsGKTtLal~~~~~~~~------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAEAQK------AGGTAAFIDAEHALDP 102 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCcEEEECCccchHH
Confidence 579999999999999988776654 2466888888776654
No 462
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.59 E-value=1.2e+02 Score=36.84 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=73.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC-C-hhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP-K-VPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP-T-~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++++-.|+|||-...-++..+.. .+.+|++.+- | |+=+..|.++.-+..|..+..- ..+.|
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~------~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--~~G~D-------- 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ------QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--KEGAD-------- 205 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH------CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--CCCCC--------
Confidence 578899999999888777766554 2445555553 3 5666666667666666665542 21111
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC--CCcE--EEEEeecCCC
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE--KRPS--VFGMTASPVN 472 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~--~~p~--iLgLTATP~~ 472 (1931)
-....+|.+++ -.-..+++|++|=|=|+-++...-..++.+.+...+. ..|+ ++.+=||-.+
T Consensus 206 -----------pAaVafDAi~~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 206 -----------PAAVAFDAIQA--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred -----------cHHHHHHHHHH--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 11244566655 2356789999999999966544444444444443221 1233 3444688663
No 463
>PRK08760 replicative DNA helicase; Provisional
Probab=69.45 E-value=24 Score=45.86 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=60.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH-cCCcEE-EEeCCCcccccch-HHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ-TGYVVG-HYCGEMGQDFWDA-QRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~-~~l~v~-~~~G~~~~~~~~~-~~w 396 (1931)
+||++.+|.|||..++-.+.+.+.. .+.+|+|.+..- =..|+...+... .++... +..|......|.+ ...
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~-----~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIK-----SKKGVAVFSMEM-SASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHh-----cCCceEEEeccC-CHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 6889999999999999888776542 134577776642 235566555442 222211 1133333333321 111
Q ss_pred HhhcCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 397 QREFDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 397 ~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
...+....+.|. |+..+...+.+- ..-..+++||||=.+.+.
T Consensus 306 ~~~l~~~~l~I~d~~~~t~~~I~~~~r~l-~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 306 IKMLKETKIFIDDTPGVSPEVLRSKCRRL-KREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHhcCCEEEeCCCCCCHHHHHHHHHHH-HHhcCCCEEEEecHHhcC
Confidence 112233445443 445554433321 122457899999777664
No 464
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=69.39 E-value=8.1 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=17.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++++++|.|+|||..+..+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999987776543
No 465
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=69.31 E-value=8.1 Score=47.18 Aligned_cols=44 Identities=16% Similarity=0.054 Sum_probs=27.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+.|+++.|+|||..++.++..........+.+.++++|.-.-.+
T Consensus 99 teI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f 142 (313)
T TIGR02238 99 TEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTF 142 (313)
T ss_pred EEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCC
Confidence 46999999999988876654332111112234578888865443
No 466
>PRK08840 replicative DNA helicase; Provisional
Probab=68.76 E-value=33 Score=44.45 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eCCCcccccchHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CGEMGQDFWDAQRW 396 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G~~~~~~~~~~~w 396 (1931)
=+||++.+|.|||..++-++.+.... .+.+|+|....-. ..|+...+-. ..++....+ .|....+.|..-..
T Consensus 219 LiviaarPg~GKTafalnia~~~a~~-----~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 292 (464)
T PRK08840 219 LIIVAARPSMGKTTFAMNLCENAAMD-----QDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISS 292 (464)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHh-----CCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHH
Confidence 36889999999999888777766532 2456888876532 3555555433 334432222 33333333332110
Q ss_pred -Hhhc-CCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 397 -QREF-DTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 397 -~~~~-~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
...+ ....+.|- |...+.....+-......+++||||=-|.+.
T Consensus 293 a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 293 TMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 0111 23344442 3444433332211112358899999888775
No 467
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=68.59 E-value=5.9 Score=48.91 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=33.2
Q ss_pred HHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 308 QLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 308 Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
..+.+..+.+ .|++++++||||||-..-.++..+ +...+++.+=.+.+|.
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i-------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI-------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc-------CCCCCEEEECCCcccc
Confidence 4455555555 899999999999986554443221 1234577777887774
No 468
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=68.48 E-value=14 Score=46.30 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=31.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+++.+++|+|||...+..+.+... .+.+++++.-.- -..|+.....
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~------~g~~VlYvs~EE-s~~qi~~Ra~ 130 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK------RGGKVLYVSGEE-SPEQIKLRAD 130 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh------cCCeEEEEECCc-CHHHHHHHHH
Confidence 689999999999988887766544 235688887653 3455554444
No 469
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=68.46 E-value=23 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=20.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
-.|+++|.|+|||..+...++.+.
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999998887664
No 470
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=68.41 E-value=7.2 Score=46.50 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 304 ARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+.+.|.+.+..++. ..++++++||||||-..-.++.++.. ...+++.|=.++++
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~------~~~~iitiEdp~E~ 120 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNT------PEKNIITVEDPVEY 120 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCC------CCCeEEEECCCcee
Confidence 56778888887765 45889999999998766554443311 23456666555553
No 471
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=68.26 E-value=28 Score=48.67 Aligned_cols=25 Identities=36% Similarity=0.336 Sum_probs=21.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.|.|+.+|.|+|||.++-.++..+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHh
Confidence 7899999999999998877766543
No 472
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=68.17 E-value=4.8 Score=47.36 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=27.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
.+|++|||+||+.- ++.++....-.+....|+||+|++-.+.
T Consensus 90 ~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 47899999999853 2222221111344567999999987653
No 473
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=67.98 E-value=14 Score=44.27 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=21.8
Q ss_pred HHHHHHhc----cCEEEEeCCCchHHHHHHHHHH
Q 000174 310 DVLEQAKK----KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 310 eai~~~l~----~n~Il~~~TGsGKTliall~i~ 339 (1931)
-.+..+++ ..+|+++|.|+|||-.+-+++.
T Consensus 151 gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 151 GLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred hHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 34444555 4579999999999988777653
No 474
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=67.73 E-value=8.8 Score=46.39 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=44.1
Q ss_pred CCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
..+..+++-|.+.+..+.. .|+++++.||||||-..-.+... -....++|.+=-|.+|-.+
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~-------i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF-------IDSDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc-------CCCcccEEEEeehhhhccC
Confidence 4567788999999999888 69999999999998533322211 1233479999888887443
No 475
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=67.65 E-value=18 Score=44.64 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 303 QARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++|||...+..+.+ .-.|+.++.|+||+..+...+..++-
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 467888888888754 23689999999999988888776654
No 476
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=67.31 E-value=15 Score=42.56 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=26.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+++++++|+|||..++.++.+.+.. +.+++++.-.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~------~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKN------GKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEECC
Confidence 6899999999999998887776542 3557777654
No 477
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=67.26 E-value=12 Score=46.10 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=27.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
++++++.|+|||..++.++..........+...++++|.-.-.
T Consensus 126 ~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 126 TEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred EEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 5799999999998887666543321111223347888876554
No 478
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=66.98 E-value=42 Score=37.65 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
...|+.++.|+|||..+...+..++.
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 44789999999999988888776654
No 479
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=66.85 E-value=15 Score=51.07 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=70.6
Q ss_pred CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEe-cccccCCCCC
Q 000174 719 TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVAT-SVAEEGLDIR 797 (1931)
Q Consensus 719 ~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaT-dVaeeGlDip 797 (1931)
..+.++.|.|+|.--|+..++.+++--.--.+++..+.. =.+.+++.++++..++|+++|+|.| .++..+|-+.
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSR-----F~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSR-----FRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK 715 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecc-----cCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe
Confidence 456899999999999999999888731112355666655 6778999999999999999999999 7899999998
Q ss_pred CCCEEEEcCCCCCHHHHHHhhc
Q 000174 798 QCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 798 ~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
+..+||. +-.||-|
T Consensus 716 dLGLlII--------DEEqRFG 729 (1139)
T COG1197 716 DLGLLII--------DEEQRFG 729 (1139)
T ss_pred cCCeEEE--------echhhcC
Confidence 8888875 3456665
No 480
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=66.81 E-value=23 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++++|.|+|||..+..++.++.-
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhC
Confidence 899999999999999998887764
No 481
>PRK11823 DNA repair protein RadA; Provisional
Probab=66.78 E-value=22 Score=45.75 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=33.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
-+++.+++|+|||...+..+..... .+.+++++.-. +-..|+....++
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~------~g~~vlYvs~E-es~~qi~~ra~r 129 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA------AGGKVLYVSGE-ESASQIKLRAER 129 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEEcc-ccHHHHHHHHHH
Confidence 3689999999999988887766553 24568888754 344566555443
No 482
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=66.60 E-value=81 Score=35.90 Aligned_cols=131 Identities=14% Similarity=0.145 Sum_probs=69.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC---ChhHHHHHHHH----HHHHcCCcEEEEeCCCcccccc
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP---KVPLVYQQAEV----IREQTGYVVGHYCGEMGQDFWD 392 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP---T~~Lv~Q~~~~----l~~~~~l~v~~~~G~~~~~~~~ 392 (1931)
++|-++-|+|||+..+..+.-.+.. +.++.+++- +++...|.... ...++.-+...+.-....-.|.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~------g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN------GYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhC------CceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 6899999999999888877766652 455666663 34444432211 1111111111121111122333
Q ss_pred hHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC-CCCcEEEEEeecCC
Q 000174 393 AQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK-EKRPSVFGMTASPV 471 (1931)
Q Consensus 393 ~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~-~~~p~iLgLTATP~ 471 (1931)
....+ .+++.+. ......+-+++|+|=-..+.-......+.. |+..... ...-+++.+|+-|.
T Consensus 105 ~~~~~--------------~~L~~l~-~~~k~~~~dViIIDSls~~~~~~~~~~vl~-fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 105 RRSAR--------------KLLDLLL-EFIKRWEKDVIIIDSLSAFATYDSEDAVLN-FMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred hHHHH--------------HHHHHHH-hhHHhhcCCEEEEecccHHhhcccHHHHHH-HHHHHHHHHhCCCEEEEEeChh
Confidence 32221 2233322 124467778999999888876544544432 3222211 22367999999987
Q ss_pred C
Q 000174 472 N 472 (1931)
Q Consensus 472 ~ 472 (1931)
.
T Consensus 169 ~ 169 (235)
T COG2874 169 A 169 (235)
T ss_pred h
Confidence 4
No 483
>PF05729 NACHT: NACHT domain
Probab=66.16 E-value=19 Score=39.00 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=27.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
++|.++.|+|||......+..+....... ....++|..+.+....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPP-SKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccc-ccceEEEEEeehhhhh
Confidence 68999999999998877776665532111 1123455555444443
No 484
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=66.15 E-value=22 Score=47.55 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=55.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhcccccccce
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSIIKMEAI 427 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i 427 (1931)
...++||.|+|+..+.++++.|.. .++.+..+||++..... ......| ...+||||| +.+..| +.+.++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~-~g~~v~~lhg~l~~~eR--~~il~~Fr~G~~~VLVaT-----dv~arG-IDip~V 326 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLER-HGYRVGVLSGDVPQKKR--ESLLNRFQKGQLEILVAT-----DVAARG-LHIDGV 326 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHH-cCCCEEEEeCCCCHHHH--HHHHHHHHcCCCeEEEEe-----hhhhcC-CCccCC
Confidence 356799999999999999988876 48899999999875432 2222223 367899999 344444 578888
Q ss_pred eEEEEeC
Q 000174 428 NLLILDE 434 (1931)
Q Consensus 428 ~lLV~DE 434 (1931)
++||.-.
T Consensus 327 ~~VInyd 333 (572)
T PRK04537 327 KYVYNYD 333 (572)
T ss_pred CEEEEcC
Confidence 8888644
No 485
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=66.06 E-value=55 Score=38.00 Aligned_cols=47 Identities=11% Similarity=0.012 Sum_probs=30.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
..+++.+++|+|||..+...+.+.+. .+..++++.-. +...|..+..
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~------~g~~~~~is~e-~~~~~i~~~~ 67 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLR------DGDPVIYVTTE-ESRESIIRQA 67 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEEcc-CCHHHHHHHH
Confidence 45789999999999888876665543 13457777643 3334444443
No 486
>PHA00012 I assembly protein
Probab=65.99 E-value=21 Score=43.05 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.++.+..|+|||+.++.-|...+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 478899999999999986666555
No 487
>PRK05973 replicative DNA helicase; Provisional
Probab=65.77 E-value=8.5 Score=44.85 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=34.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.-++|++++|+|||..++..+.+.+.. +.+++|++-.-. ..|..+.+..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~------Ge~vlyfSlEes-~~~i~~R~~s 113 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKS------GRTGVFFTLEYT-EQDVRDRLRA 113 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc------CCeEEEEEEeCC-HHHHHHHHHH
Confidence 346889999999999999887776542 456888875422 3555555554
No 488
>PHA00350 putative assembly protein
Probab=65.71 E-value=28 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.066 Sum_probs=18.0
Q ss_pred EEEEeCCCchHHHHHHH-HHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVL-LIRSICN 343 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall-~i~~~l~ 343 (1931)
.|+.+..|||||+-++. .|...+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 47889999999999886 4444443
No 489
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=65.57 E-value=7.7 Score=46.23 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++..++++..++. .++++.+++|+|||.++..+..
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45666666666554 7899999999999998877654
No 490
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=65.54 E-value=3.6 Score=45.47 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=43.0
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHH
Q 000174 321 IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 321 Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+|.++=|-||+-+..+.+..++.. ...+++|-+|+.+=+....+.+..-+ +++...... ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~-------~~~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-----GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR-------IGQIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS----------EEEE-SS--S-HHHHHCC-----------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-----cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc-------cccccc
Confidence 578899999998888876555442 22579999999876665555443321 221100000 000000
Q ss_pred hhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc
Q 000174 398 REFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA 438 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~ 438 (1931)
-......|-+..|..+.. .....++||+|||=-+
T Consensus 69 ~~~~~~~i~f~~Pd~l~~-------~~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLA-------EKPQADLLIVDEAAAI 102 (177)
T ss_dssp ----CCC--B--HHHHCC-------T----SCEEECTGGGS
T ss_pred cccccceEEEECCHHHHh-------CcCCCCEEEEechhcC
Confidence 111356677778877752 1235699999999766
No 491
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=65.31 E-value=12 Score=46.62 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=54.1
Q ss_pred HHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEe
Q 000174 309 LDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYC 383 (1931)
Q Consensus 309 ~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~ 383 (1931)
+++++.+.. ..+++.++||+||+++|.++- .+... ....+ +|-++=-++..-- ...+.||..-+.++
T Consensus 88 ~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH--~~s~r--~~~~P--FI~~NCa~~~en~--~~~eLFG~~kGaft 159 (403)
T COG1221 88 QELREQIKAYAPSGLPVLIIGETGTGKELFARLIH--ALSAR--RAEAP--FIAFNCAAYSENL--QEAELFGHEKGAFT 159 (403)
T ss_pred HHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHH--Hhhhc--ccCCC--EEEEEHHHhCcCH--HHHHHhccccceee
Confidence 444555443 689999999999999988763 11110 01222 2223311221111 11127888888888
Q ss_pred CCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 384 GEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 384 G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
|..... .|.+...+=+.|.+||.|++.-
T Consensus 160 Ga~~~k-----------------------------~Glfe~A~GGtLfLDEI~~LP~ 187 (403)
T COG1221 160 GAQGGK-----------------------------AGLFEQANGGTLFLDEIHRLPP 187 (403)
T ss_pred cccCCc-----------------------------CchheecCCCEEehhhhhhCCH
Confidence 854321 1223344456899999999954
No 492
>PRK09165 replicative DNA helicase; Provisional
Probab=65.23 E-value=40 Score=44.10 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=61.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhh---------cCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEE-EeCCCcc
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQR---------QNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGH-YCGEMGQ 388 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~---------~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~-~~G~~~~ 388 (1931)
+||++.||+|||..++-.+.+....... ...+.+|+|++..- =..|+...+-. ..++.... ..|....
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM-s~~ql~~R~la~~s~v~~~~i~~~~l~~ 298 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM-SAEQLATRILSEQSEISSSKIRRGKISE 298 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC-CHHHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence 6889999999999888877776543210 01245688886542 23455554433 33443222 2333333
Q ss_pred cccch-HHHHhhcCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 389 DFWDA-QRWQREFDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 389 ~~~~~-~~w~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
+.|.+ ......+....+.|- |...+...+.+- ..-..+++||||=.|.+.
T Consensus 299 ~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l-~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 299 EDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRL-KRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHH-HHhcCCCEEEEcchHhcc
Confidence 22321 111111223445443 455554444321 112357899999887665
No 493
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=64.92 E-value=7.3 Score=44.32 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=26.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
++++++||||||-....++.++.. ..+.+++++-...++.
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~-----~~~~~i~t~e~~~E~~ 43 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK-----NKTHHILTIEDPIEFV 43 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh-----cCCcEEEEEcCCcccc
Confidence 689999999999776555444322 2345677777666553
No 494
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=64.51 E-value=9.4 Score=51.37 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=58.9
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
.+......++-|.+++..-.. +.+.+++|+|+|||-+++-++...... .+..+++|++....-.+|..+.+.+
T Consensus 732 p~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn----~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 732 PKKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHN----SPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred cccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhc----CCCcceEEEEecccchhHHHHHHHh
Confidence 345566778999999988888 899999999999999998887666553 3567899999998877877776655
No 495
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=64.36 E-value=26 Score=45.31 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..|++++.|+|||.++...+..+..
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3689999999999999998876653
No 496
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=64.35 E-value=31 Score=39.05 Aligned_cols=79 Identities=22% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCCHHHHH-HHHHHHHhcC---CCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHh
Q 000174 701 KVTPKVQS-LIKILLKYQH---TEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 701 ~~s~Kv~~-Li~lL~~~~~---~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
..+.|-.. ++-++..... ....++||.++++.-+......+.......++.+..++| +.+..+....+
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--- 116 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYG-----GTSIDKQIRKL--- 116 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEEC-----CCCHHHHHHHh---
Confidence 44566533 3333433322 356789999999999888877776653335678888998 55554443332
Q ss_pred hcCCceEEEEec
Q 000174 777 RDGRVTLLVATS 788 (1931)
Q Consensus 777 r~G~~~vLVaTd 788 (1931)
. +...|+|+|.
T Consensus 117 ~-~~~~iiv~T~ 127 (203)
T cd00268 117 K-RGPHIVVATP 127 (203)
T ss_pred c-CCCCEEEECh
Confidence 2 6778999995
No 497
>PF12846 AAA_10: AAA-like domain
Probab=63.80 E-value=8.8 Score=46.46 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=29.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+++++.+.||+|||......+.+.+.. +..++++=|..+.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~------g~~~~i~D~~g~~ 41 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR------GPRVVIFDPKGDY 41 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc------CCCEEEEcCCchH
Confidence 578999999999998888777666653 3557777666444
No 498
>PRK05636 replicative DNA helicase; Provisional
Probab=63.59 E-value=43 Score=43.85 Aligned_cols=113 Identities=14% Similarity=0.197 Sum_probs=55.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-HHcCCcEEEE-eCCCcccccch-HHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-EQTGYVVGHY-CGEMGQDFWDA-QRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-~~~~l~v~~~-~G~~~~~~~~~-~~w 396 (1931)
+||++.||+|||..++-.+.+...+ .+..++|.... .=..|+...+- ...++....+ .|....+.|.+ ..+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~-----~g~~v~~fSlE-Ms~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a 341 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK-----HNKASVIFSLE-MSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQR 341 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEee-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 5789999999998888777665432 23457777442 11233333332 2223322211 23333333321 111
Q ss_pred HhhcCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCccc
Q 000174 397 QREFDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAV 439 (1931)
Q Consensus 397 ~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~ 439 (1931)
...+....+.|- |...+.....+- ..-..+++||||=-|.+.
T Consensus 342 ~~~l~~~~l~I~d~~~~ti~~I~~~~r~~-~~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 342 LGKIAQAPIFIDDSANLTMMEIRSKARRL-KQKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHH-HHhcCCCEEEEcchHhcC
Confidence 122334455553 333333322221 112357899999888775
No 499
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=63.17 E-value=29 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=19.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l 342 (1931)
..|+++|.|+|||..+..++..+.
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 368999999999988887776654
No 500
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.00 E-value=11 Score=46.40 Aligned_cols=50 Identities=26% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 308 QLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 308 Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
..+.+..+.. .|++++++||||||-..-.++..+ +...+++.+=-+.||.
T Consensus 149 ~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i-------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 149 IKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI-------PAIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC-------CCCCeEEEecCCCccc
Confidence 3445555554 899999999999985543333221 2345677666666653
Done!