Query 000174
Match_columns 1931
No_of_seqs 1008 out of 6175
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:28:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 2.3E-71 7.9E-76 722.8 30.9 415 1231-1760 152-754 (756)
2 2ykg_A Probable ATP-dependent 100.0 1.2E-42 4E-47 470.9 40.2 607 294-959 4-679 (696)
3 4a2p_A RIG-I, retinoic acid in 100.0 2E-41 6.9E-46 447.0 46.0 477 299-837 3-510 (556)
4 4a2q_A RIG-I, retinoic acid in 100.0 2.5E-40 8.4E-45 451.8 48.6 477 299-837 244-751 (797)
5 2db3_A ATP-dependent RNA helic 100.0 4.5E-41 1.6E-45 427.7 36.2 342 281-833 56-405 (434)
6 3tbk_A RIG-I helicase domain; 100.0 2.3E-40 7.8E-45 436.8 43.2 474 302-837 3-509 (555)
7 4gl2_A Interferon-induced heli 100.0 1.5E-40 5.1E-45 450.5 41.2 476 301-839 5-523 (699)
8 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-39 3.9E-44 448.9 47.9 476 299-836 244-750 (936)
9 1wp9_A ATP-dependent RNA helic 100.0 4.1E-38 1.4E-42 407.7 45.6 451 302-836 8-476 (494)
10 1xti_A Probable ATP-dependent 100.0 2.9E-38 1E-42 397.6 34.8 337 282-830 9-350 (391)
11 3c4b_A Endoribonuclease dicer; 100.0 4E-40 1.4E-44 387.6 16.4 237 1591-1829 14-263 (265)
12 2i4i_A ATP-dependent RNA helic 100.0 3E-38 1E-42 401.1 33.6 345 282-836 16-384 (417)
13 2j0s_A ATP-dependent RNA helic 100.0 4E-38 1.4E-42 399.0 33.1 334 282-829 38-375 (410)
14 3i5x_A ATP-dependent RNA helic 100.0 7.8E-38 2.7E-42 412.9 33.5 343 292-835 83-449 (563)
15 3n3w_A Ribonuclease III; nucle 100.0 1.8E-40 6.2E-45 382.6 6.4 212 1591-1829 27-247 (248)
16 2nug_A Ribonuclease III, RNAse 100.0 3.7E-39 1.3E-43 368.1 16.6 206 1591-1828 3-218 (221)
17 3pey_A ATP-dependent RNA helic 100.0 2.4E-37 8.3E-42 389.4 34.9 334 282-832 6-351 (395)
18 1s2m_A Putative ATP-dependent 100.0 1.6E-37 5.4E-42 392.2 31.6 331 281-828 21-356 (400)
19 3fht_A ATP-dependent RNA helic 100.0 8.8E-37 3E-41 386.8 36.4 335 281-831 25-373 (412)
20 3eiq_A Eukaryotic initiation f 100.0 2.4E-37 8.3E-42 392.3 29.2 339 282-834 41-386 (414)
21 1hv8_A Putative ATP-dependent 100.0 1.5E-36 5E-41 378.3 35.0 332 281-835 6-345 (367)
22 3sqw_A ATP-dependent RNA helic 100.0 5.1E-37 1.7E-41 405.2 31.3 342 292-834 32-397 (579)
23 1o0w_A Ribonuclease III, RNAse 100.0 6.4E-39 2.2E-43 372.5 10.6 217 1589-1830 18-250 (252)
24 2a11_A Ribonuclease III, RNAse 100.0 1.4E-38 4.6E-43 368.7 2.9 214 1592-1831 7-233 (242)
25 3fmp_B ATP-dependent RNA helic 100.0 5.3E-37 1.8E-41 396.6 17.7 331 282-828 93-437 (479)
26 1fuu_A Yeast initiation factor 100.0 5.5E-37 1.9E-41 386.3 16.4 331 282-827 22-356 (394)
27 3rv0_A K. polysporus DCR1; RNA 100.0 3.6E-38 1.2E-42 375.6 4.4 221 1593-1835 86-326 (341)
28 2z0m_A 337AA long hypothetical 100.0 4E-35 1.4E-39 361.0 30.0 304 293-828 6-314 (337)
29 1oyw_A RECQ helicase, ATP-depe 100.0 9.4E-35 3.2E-39 376.3 31.6 314 292-827 13-333 (523)
30 2v1x_A ATP-dependent DNA helic 100.0 1.1E-34 3.8E-39 378.9 29.7 315 293-828 33-365 (591)
31 3oiy_A Reverse gyrase helicase 100.0 6.4E-35 2.2E-39 369.9 25.4 304 296-825 14-349 (414)
32 3fho_A ATP-dependent RNA helic 100.0 2.4E-35 8.1E-40 382.2 16.1 325 292-833 130-468 (508)
33 2fwr_A DNA repair protein RAD2 100.0 2.6E-34 8.9E-39 370.7 21.6 348 302-827 92-441 (472)
34 3l9o_A ATP-dependent RNA helic 100.0 6.3E-33 2.2E-37 383.7 32.8 158 294-472 175-333 (1108)
35 1z63_A Helicase of the SNF2/RA 100.0 1.8E-32 6.3E-37 356.1 33.2 367 302-827 36-441 (500)
36 2oca_A DAR protein, ATP-depend 100.0 9E-33 3.1E-37 360.0 25.9 329 301-827 111-445 (510)
37 3dmq_A RNA polymerase-associat 100.0 5.2E-33 1.8E-37 382.9 24.8 412 302-827 152-603 (968)
38 3mwy_W Chromo domain-containin 100.0 6.2E-32 2.1E-36 367.6 34.0 395 301-827 234-672 (800)
39 2xgj_A ATP-dependent RNA helic 100.0 1E-31 3.6E-36 368.5 36.1 358 302-826 85-486 (1010)
40 1z3i_X Similar to RAD54-like; 100.0 4.4E-31 1.5E-35 350.4 39.2 400 302-827 54-516 (644)
41 2va8_A SSO2462, SKI2-type heli 100.0 3E-31 1E-35 359.2 37.8 339 282-825 9-394 (715)
42 2zj8_A DNA helicase, putative 100.0 2.2E-31 7.7E-36 360.1 32.6 323 291-826 11-374 (720)
43 4ddu_A Reverse gyrase; topoiso 100.0 1.1E-31 3.9E-36 371.2 27.6 163 299-471 75-261 (1104)
44 2p6r_A Afuhel308 helicase; pro 100.0 3.9E-31 1.3E-35 356.7 28.9 323 293-825 15-374 (702)
45 1gm5_A RECG; helicase, replica 100.0 1.2E-31 4.3E-36 356.3 22.1 310 294-830 360-690 (780)
46 3h1t_A Type I site-specific re 100.0 4E-31 1.4E-35 350.1 25.3 352 302-833 177-556 (590)
47 4a4z_A Antiviral helicase SKI2 100.0 8.6E-30 3E-34 349.8 35.2 151 302-472 38-190 (997)
48 1tf5_A Preprotein translocase 100.0 2.7E-30 9.1E-35 334.6 28.0 367 298-836 79-546 (844)
49 2eyq_A TRCF, transcription-rep 100.0 1.1E-29 3.7E-34 353.9 34.3 299 299-827 600-912 (1151)
50 1gku_B Reverse gyrase, TOP-RG; 100.0 4.3E-30 1.5E-34 356.3 21.2 159 297-472 52-227 (1054)
51 2fsf_A Preprotein translocase 100.0 3.2E-29 1.1E-33 323.2 26.6 126 302-440 73-208 (853)
52 2jlq_A Serine protease subunit 100.0 3.8E-30 1.3E-34 327.9 16.2 277 300-826 1-299 (451)
53 3o2r_A Ribonuclease III; struc 100.0 1.6E-30 5.6E-35 280.1 7.1 143 1590-1759 26-168 (170)
54 1nkt_A Preprotein translocase 100.0 5.6E-28 1.9E-32 311.4 27.4 145 298-456 107-276 (922)
55 2whx_A Serine protease/ntpase/ 100.0 6.3E-29 2.2E-33 325.3 16.3 275 302-826 170-466 (618)
56 4f92_B U5 small nuclear ribonu 100.0 2.8E-27 9.6E-32 338.0 32.6 165 300-471 76-255 (1724)
57 3o8b_A HCV NS3 protease/helica 100.0 4.8E-28 1.7E-32 312.6 19.4 148 300-472 214-362 (666)
58 2wv9_A Flavivirin protease NS2 100.0 2.4E-28 8.1E-33 321.5 16.5 93 721-827 410-523 (673)
59 3rv1_A K. polysporus DCR1; RNA 99.9 4.6E-29 1.6E-33 281.9 6.7 146 1593-1760 86-242 (246)
60 4f92_B U5 small nuclear ribonu 99.9 1.6E-26 5.3E-31 330.3 33.9 168 294-472 917-1095(1724)
61 1yks_A Genome polyprotein [con 99.9 4.9E-29 1.7E-33 316.1 6.6 91 721-825 177-286 (440)
62 2v6i_A RNA helicase; membrane, 99.9 1.4E-27 4.7E-32 302.3 19.2 92 721-826 171-279 (431)
63 2z83_A Helicase/nucleoside tri 99.9 7.5E-28 2.6E-32 307.1 14.5 100 721-834 190-312 (459)
64 2xau_A PRE-mRNA-splicing facto 99.9 5.6E-27 1.9E-31 314.5 21.9 318 292-827 83-434 (773)
65 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 7.3E-25 2.5E-29 298.4 34.8 187 301-513 269-474 (1038)
66 2kou_A Dicer-like protein 4; A 99.9 1.5E-25 5.2E-30 218.2 9.5 93 892-987 1-93 (102)
67 3rc3_A ATP-dependent RNA helic 99.9 4.7E-24 1.6E-28 279.6 23.6 95 723-827 322-432 (677)
68 3o2r_A Ribonuclease III; struc 99.9 1.2E-24 4.2E-29 234.4 9.0 133 1372-1562 29-162 (170)
69 2oxc_A Probable ATP-dependent 99.9 7.8E-23 2.7E-27 236.9 17.6 181 281-471 24-209 (230)
70 1t6n_A Probable ATP-dependent 99.9 1.3E-22 4.3E-27 233.5 17.2 183 282-472 15-202 (220)
71 1vec_A ATP-dependent RNA helic 99.9 2.5E-22 8.5E-27 228.5 18.3 180 282-471 4-188 (206)
72 1wrb_A DJVLGB; RNA helicase, D 99.9 3.8E-22 1.3E-26 234.8 20.1 186 282-472 24-221 (253)
73 3fe2_A Probable ATP-dependent 99.9 3.9E-22 1.3E-26 232.9 19.8 183 282-471 30-218 (242)
74 2gxq_A Heat resistant RNA depe 99.9 1.7E-22 5.8E-27 230.0 15.8 182 284-472 4-187 (207)
75 1qu6_A Protein kinase PKR; dsR 99.9 3.7E-22 1.3E-26 219.1 16.3 158 1763-1929 11-173 (179)
76 1q0u_A Bstdead; DEAD protein, 99.9 2.1E-22 7.2E-27 231.4 15.1 179 283-471 6-192 (219)
77 3ber_A Probable ATP-dependent 99.9 7.2E-22 2.5E-26 231.3 19.3 181 281-471 43-228 (249)
78 3iuy_A Probable ATP-dependent 99.9 4.5E-22 1.6E-26 230.2 16.0 176 289-471 28-209 (228)
79 3n3w_A Ribonuclease III; nucle 99.9 7.4E-23 2.5E-27 235.9 9.2 133 1372-1562 29-162 (248)
80 3jux_A Protein translocase sub 99.9 1.2E-20 3.9E-25 238.2 28.8 122 703-836 457-588 (822)
81 1qde_A EIF4A, translation init 99.9 9.8E-22 3.4E-26 226.7 17.4 181 281-472 14-198 (224)
82 3bor_A Human initiation factor 99.9 6.6E-22 2.3E-26 230.1 15.8 181 281-471 30-215 (237)
83 2pl3_A Probable ATP-dependent 99.9 1.6E-21 5.5E-26 226.9 18.3 182 282-471 26-213 (236)
84 3fmo_B ATP-dependent RNA helic 99.9 2E-21 6.8E-26 233.7 19.0 180 281-472 92-279 (300)
85 3ly5_A ATP-dependent RNA helic 99.9 1.3E-21 4.4E-26 231.0 16.6 174 292-472 65-244 (262)
86 3rv1_A K. polysporus DCR1; RNA 99.9 1.9E-22 6.4E-27 228.1 8.8 133 1373-1562 87-235 (246)
87 1c4o_A DNA nucleotide excision 99.9 1.6E-20 5.4E-25 248.6 28.3 104 720-832 438-546 (664)
88 2qvw_A GLP_546_48378_50642; di 99.9 2.8E-23 9.6E-28 271.3 1.1 164 1612-1831 322-499 (756)
89 3c4b_A Endoribonuclease dicer; 99.8 1.1E-21 3.6E-26 230.7 11.2 90 1372-1461 16-109 (265)
90 2nug_A Ribonuclease III, RNAse 99.8 8.9E-22 3E-26 224.6 10.0 128 1372-1563 5-135 (221)
91 3b6e_A Interferon-induced heli 99.8 1.3E-20 4.5E-25 215.8 17.2 169 297-469 27-216 (216)
92 3dkp_A Probable ATP-dependent 99.8 3.9E-21 1.3E-25 225.0 12.7 173 292-471 40-221 (245)
93 2yt4_A Protein DGCR8; DSRBD, R 99.8 9.3E-21 3.2E-25 215.3 14.2 157 1763-1929 20-199 (232)
94 2d7d_A Uvrabc system protein B 99.8 1.4E-19 4.7E-24 239.6 25.8 107 720-835 444-556 (661)
95 2a11_A Ribonuclease III, RNAse 99.8 1.5E-21 5.1E-26 225.9 5.8 133 1372-1562 8-147 (242)
96 1o0w_A Ribonuclease III, RNAse 99.8 2E-21 6.8E-26 225.6 4.8 133 1372-1562 22-164 (252)
97 3rv0_A K. polysporus DCR1; RNA 99.8 7.8E-21 2.7E-25 226.7 9.4 133 1373-1562 87-235 (341)
98 2hjv_A ATP-dependent RNA helic 99.8 2.3E-19 7.7E-24 195.8 16.0 117 701-829 18-134 (163)
99 1t5i_A C_terminal domain of A 99.8 1.6E-19 5.5E-24 198.6 13.8 115 702-828 15-129 (172)
100 2p6n_A ATP-dependent RNA helic 99.8 1.8E-19 6.1E-24 201.4 13.3 121 701-834 38-160 (191)
101 2jgn_A DBX, DDX3, ATP-dependen 99.8 2.8E-19 9.4E-24 199.0 14.3 124 701-835 28-153 (185)
102 3eaq_A Heat resistant RNA depe 99.8 1E-18 3.5E-23 199.0 16.2 122 701-834 14-137 (212)
103 1fuk_A Eukaryotic initiation f 99.8 9.5E-19 3.3E-23 191.3 14.9 120 704-835 16-137 (165)
104 2rb4_A ATP-dependent RNA helic 99.8 1.3E-18 4.3E-23 192.3 15.5 113 704-828 20-138 (175)
105 1rif_A DAR protein, DNA helica 99.8 2.3E-18 8E-23 205.7 14.8 151 302-474 112-266 (282)
106 3i32_A Heat resistant RNA depe 99.7 5.8E-18 2E-22 201.6 14.6 123 701-835 11-135 (300)
107 2fz4_A DNA repair protein RAD2 99.7 9.5E-18 3.2E-22 194.4 14.9 141 301-475 91-233 (237)
108 2ipc_A Preprotein translocase 99.7 4E-16 1.4E-20 200.6 28.7 129 298-440 75-216 (997)
109 2yjt_D ATP-dependent RNA helic 99.6 3.8E-19 1.3E-23 195.4 0.0 114 703-828 15-128 (170)
110 2l3j_A Double-stranded RNA-spe 99.7 2.2E-16 7.4E-21 180.4 18.7 152 1764-1929 3-226 (236)
111 1z5z_A Helicase of the SNF2/RA 99.7 9.3E-17 3.2E-21 189.1 12.4 118 701-827 93-212 (271)
112 2vl7_A XPD; helicase, unknown 99.7 1.3E-15 4.3E-20 198.0 21.4 127 303-439 7-188 (540)
113 1u61_A Hypothetical protein; s 99.6 5.2E-16 1.8E-20 158.7 8.4 105 1624-1754 10-126 (138)
114 3llm_A ATP-dependent RNA helic 99.6 2.4E-15 8.3E-20 174.4 11.4 159 300-472 58-220 (235)
115 1u61_A Hypothetical protein; s 99.6 4.3E-15 1.5E-19 151.9 8.5 106 1399-1563 9-126 (138)
116 3adl_A RISC-loading complex su 99.5 6.5E-15 2.2E-19 139.9 8.2 75 1850-1931 13-87 (88)
117 3adj_A F21M12.9 protein; HYL1, 99.5 4.4E-15 1.5E-19 137.9 6.1 72 1851-1928 3-74 (76)
118 1di2_A XLRBPA, double stranded 99.5 5.9E-15 2E-19 134.6 6.7 69 1853-1928 1-69 (69)
119 2cpn_A TAR RNA-binding protein 99.5 1.3E-14 4.3E-19 138.4 8.6 77 1846-1929 10-86 (89)
120 1ekz_A DSRBDIII, maternal effe 99.5 8.8E-15 3E-19 136.1 4.1 72 1850-1929 5-76 (76)
121 1uhz_A Staufen (RNA binding pr 99.5 3E-14 1E-18 135.8 6.6 70 1852-1928 6-75 (89)
122 2gsl_A Hypothetical protein; a 99.5 2.2E-14 7.6E-19 146.2 6.0 106 1624-1756 13-128 (137)
123 3adg_A F21M12.9 protein; HYL1, 99.5 4.1E-14 1.4E-18 130.5 6.6 71 1852-1928 3-73 (73)
124 2khx_A Ribonuclease 3; drosha, 99.5 3.9E-14 1.3E-18 133.8 6.1 70 1853-1928 2-76 (85)
125 1x49_A Interferon-induced, dou 99.5 9.7E-14 3.3E-18 134.4 8.6 73 1850-1929 12-84 (97)
126 2dix_A Interferon-inducible do 99.4 1.2E-13 4.1E-18 130.5 7.4 71 1851-1929 7-77 (84)
127 2b7t_A Double-stranded RNA-spe 99.4 2.8E-13 9.4E-18 124.9 8.4 70 1851-1929 3-72 (73)
128 3llh_A RISC-loading complex su 99.4 2.8E-13 9.7E-18 129.8 8.4 72 1850-1929 12-83 (90)
129 2gsl_A Hypothetical protein; a 99.4 1.2E-13 4.1E-18 140.9 5.6 105 1399-1563 12-126 (137)
130 1whq_A RNA helicase A; double- 99.4 3.9E-13 1.3E-17 130.5 6.7 70 1852-1928 6-75 (99)
131 2l33_A Interleukin enhancer-bi 99.3 7.9E-13 2.7E-17 125.6 6.8 71 1852-1931 14-84 (91)
132 1x48_A Interferon-induced, dou 99.3 1.2E-12 4E-17 124.7 7.9 72 1851-1931 5-77 (88)
133 2l2n_A Hyponastic leave 1; DSR 99.3 6E-13 2.1E-17 130.5 5.9 75 1849-1929 14-88 (103)
134 1uil_A Double-stranded RNA-bin 99.3 1.2E-12 4E-17 130.4 7.1 73 1851-1928 25-99 (113)
135 1x47_A DGCR8 protein; structur 99.3 1.8E-12 6.1E-17 126.0 7.6 72 1850-1929 14-85 (98)
136 2dmy_A Spermatid perinuclear R 99.3 3.4E-12 1.2E-16 123.9 9.1 70 1850-1928 14-83 (97)
137 3o7v_X PIWI-like protein 1; PI 99.3 9.6E-13 3.3E-17 133.0 5.3 97 1232-1351 25-121 (124)
138 2b7v_A Double-stranded RNA-spe 99.3 5.6E-12 1.9E-16 115.5 7.5 67 1851-1929 3-69 (71)
139 1t4n_A Ribonuclease III; DSRBD 99.3 1.9E-12 6.7E-17 122.4 4.5 69 1852-1927 6-74 (94)
140 3crv_A XPD/RAD3 related DNA he 99.2 1.1E-11 3.8E-16 161.7 9.9 130 302-440 2-187 (551)
141 3p1x_A Interleukin enhancer-bi 99.2 1.7E-11 5.7E-16 113.2 8.2 69 1851-1931 6-74 (75)
142 3qir_A PIWI-like protein 2; st 99.2 7.3E-12 2.5E-16 130.9 5.9 99 1233-1353 26-124 (148)
143 1t4o_A Ribonuclease III; RNT1P 99.2 5.7E-12 1.9E-16 123.2 4.3 71 1851-1928 7-77 (117)
144 2ljh_A Double-stranded RNA-spe 99.2 1.9E-11 6.6E-16 120.7 6.3 68 1850-1929 35-102 (114)
145 1qu6_A Protein kinase PKR; dsR 99.2 3.4E-11 1.2E-15 132.0 8.4 72 1851-1929 12-83 (179)
146 2xfm_A MIWI, PIWI-like protein 99.2 2.8E-11 9.7E-16 128.0 7.2 99 1233-1354 27-125 (150)
147 1whn_A Hypothetical protein ri 99.1 1.1E-10 3.8E-15 118.2 7.7 69 1851-1927 25-93 (128)
148 3adg_A F21M12.9 protein; HYL1, 99.0 7.5E-10 2.6E-14 102.0 8.6 64 1765-1828 3-72 (73)
149 1t4n_A Ribonuclease III; DSRBD 99.0 3.4E-10 1.2E-14 107.1 5.7 72 1764-1835 5-81 (94)
150 3llh_A RISC-loading complex su 99.0 1E-09 3.5E-14 105.1 8.9 70 1762-1832 11-85 (90)
151 3adl_A RISC-loading complex su 99.0 1.8E-09 6.3E-14 102.5 9.8 67 1763-1830 13-85 (88)
152 1di2_A XLRBPA, double stranded 99.0 1.6E-09 5.5E-14 98.6 9.0 62 1766-1828 1-68 (69)
153 1x48_A Interferon-induced, dou 98.9 1.8E-09 6.1E-14 102.8 9.4 66 1764-1830 5-75 (88)
154 1t4o_A Ribonuclease III; RNT1P 98.9 1.2E-09 4E-14 107.0 8.0 75 1763-1837 6-85 (117)
155 2yt4_A Protein DGCR8; DSRBD, R 98.9 1.1E-09 3.9E-14 124.3 8.2 72 1850-1929 20-91 (232)
156 2dix_A Interferon-inducible do 98.9 2.2E-09 7.5E-14 101.4 8.7 66 1764-1830 7-77 (84)
157 3adj_A F21M12.9 protein; HYL1, 98.9 2E-09 6.9E-14 99.8 8.1 65 1765-1829 4-74 (76)
158 4a15_A XPD helicase, ATP-depen 98.9 2E-09 6.7E-14 141.4 11.2 79 302-385 2-88 (620)
159 1whq_A RNA helicase A; double- 98.9 1.7E-09 5.8E-14 105.0 7.8 69 1764-1832 5-78 (99)
160 1x47_A DGCR8 protein; structur 98.9 3.2E-09 1.1E-13 103.1 9.7 67 1763-1829 14-84 (98)
161 2cpn_A TAR RNA-binding protein 98.9 3.1E-09 1.1E-13 101.2 9.4 65 1764-1829 15-85 (89)
162 1x49_A Interferon-induced, dou 98.9 1.3E-09 4.6E-14 105.4 7.0 68 1763-1830 12-84 (97)
163 1uhz_A Staufen (RNA binding pr 98.9 3.9E-09 1.3E-13 100.6 9.5 67 1764-1831 5-77 (89)
164 2l2n_A Hyponastic leave 1; DSR 98.9 3.1E-09 1.1E-13 104.2 8.9 69 1763-1831 15-89 (103)
165 1ekz_A DSRBDIII, maternal effe 98.9 1.1E-09 3.6E-14 101.8 5.3 66 1763-1829 5-75 (76)
166 2khx_A Ribonuclease 3; drosha, 98.8 2.4E-09 8.4E-14 101.0 6.0 65 1765-1829 1-76 (85)
167 1whn_A Hypothetical protein ri 98.8 7.9E-09 2.7E-13 104.7 9.7 88 1739-1829 3-94 (128)
168 1uil_A Double-stranded RNA-bin 98.8 9.2E-09 3.1E-13 102.5 7.7 69 1764-1832 25-102 (113)
169 2b7t_A Double-stranded RNA-spe 98.8 1.8E-08 6.1E-13 92.7 8.5 64 1764-1829 3-71 (73)
170 2dmy_A Spermatid perinuclear R 98.7 3.3E-08 1.1E-12 95.9 10.3 65 1763-1829 14-83 (97)
171 2l33_A Interleukin enhancer-bi 98.7 4.1E-08 1.4E-12 93.3 9.1 65 1763-1829 12-81 (91)
172 2ljh_A Double-stranded RNA-spe 98.6 3.8E-08 1.3E-12 97.3 7.0 62 1764-1830 36-102 (114)
173 2l3j_A Double-stranded RNA-spe 98.6 7.3E-08 2.5E-12 110.0 8.3 69 1852-1929 4-72 (236)
174 2b7v_A Double-stranded RNA-spe 98.5 2.3E-07 7.8E-12 84.8 8.0 62 1764-1830 3-69 (71)
175 3p1x_A Interleukin enhancer-bi 98.4 4.7E-07 1.6E-11 83.5 7.9 62 1764-1830 6-72 (75)
176 3hgt_A HDA1 complex subunit 3; 98.3 3.7E-06 1.3E-10 98.8 13.0 123 702-839 107-241 (328)
177 1w36_D RECD, exodeoxyribonucle 97.5 0.00022 7.4E-09 93.6 11.8 68 305-374 151-219 (608)
178 1vyn_A Argonaute2; nucleic aci 97.4 0.00011 3.7E-09 76.9 5.4 80 1233-1346 35-120 (143)
179 4b3f_X DNA-binding protein smu 97.3 0.00027 9.4E-09 93.7 9.2 66 302-373 188-255 (646)
180 2gk6_A Regulator of nonsense t 97.3 0.00039 1.3E-08 91.6 10.6 130 301-440 178-353 (624)
181 3mj0_A Protein argonaute-2; ar 97.2 0.00015 5E-09 73.6 3.1 80 1233-1346 33-118 (124)
182 2xzl_A ATP-dependent helicase 97.2 0.00078 2.7E-08 90.6 11.0 129 301-440 358-531 (802)
183 2wjy_A Regulator of nonsense t 97.1 0.00093 3.2E-08 89.8 10.6 74 300-379 353-427 (800)
184 3upu_A ATP-dependent DNA helic 96.7 0.0022 7.5E-08 81.4 8.7 66 296-366 18-89 (459)
185 3e1s_A Exodeoxyribonuclease V, 96.6 0.0046 1.6E-07 80.2 10.7 63 301-369 187-250 (574)
186 4f3t_A Protein argonaute-2; hy 95.9 0.0045 1.5E-07 83.5 4.9 84 1233-1346 262-350 (861)
187 2o0j_A Terminase, DNA packagin 95.8 0.11 3.7E-06 63.4 16.5 70 302-375 162-232 (385)
188 2kou_A Dicer-like protein 4; A 95.6 0.015 5E-07 56.7 6.1 73 1851-1928 3-80 (102)
189 3cpe_A Terminase, DNA packagin 94.5 0.29 1E-05 63.8 15.8 146 302-472 162-315 (592)
190 4a15_A XPD helicase, ATP-depen 94.4 0.054 1.9E-06 70.9 8.5 90 707-809 434-527 (620)
191 3te6_A Regulatory protein SIR3 93.5 0.5 1.7E-05 56.0 13.6 26 318-343 46-71 (318)
192 3lfu_A DNA helicase II; SF1 he 93.5 0.078 2.7E-06 70.3 7.5 91 302-418 8-98 (647)
193 2orw_A Thymidine kinase; TMTK, 93.4 0.24 8.3E-06 54.0 9.9 36 320-361 6-41 (184)
194 3vkw_A Replicase large subunit 92.8 0.1 3.4E-06 64.5 6.2 83 320-438 164-246 (446)
195 3ec2_A DNA replication protein 92.8 0.41 1.4E-05 51.8 10.6 38 305-342 16-63 (180)
196 2v1u_A Cell division control p 92.4 0.74 2.5E-05 56.2 13.6 39 305-343 24-70 (387)
197 3bos_A Putative DNA replicatio 92.0 0.14 4.6E-06 58.2 5.8 24 318-341 53-76 (242)
198 1uaa_A REP helicase, protein ( 91.7 0.17 5.8E-06 67.3 7.1 90 303-417 2-91 (673)
199 1xx6_A Thymidine kinase; NESG, 91.6 0.18 6.2E-06 55.3 5.9 36 320-361 11-46 (191)
200 2j9r_A Thymidine kinase; TK1, 91.2 0.28 9.4E-06 54.4 6.8 36 320-361 31-66 (214)
201 2b8t_A Thymidine kinase; deoxy 90.7 0.15 5.2E-06 57.3 4.2 89 320-440 15-103 (223)
202 3kl4_A SRP54, signal recogniti 89.8 1.6 5.5E-05 53.9 12.7 119 320-470 100-223 (433)
203 1l8q_A Chromosomal replication 89.6 0.83 2.8E-05 54.6 9.8 25 318-342 38-62 (324)
204 1pjr_A PCRA; DNA repair, DNA r 89.1 0.52 1.8E-05 63.0 8.2 71 302-375 10-80 (724)
205 2chg_A Replication factor C sm 88.7 2.3 7.7E-05 47.0 12.1 24 318-341 39-62 (226)
206 1u04_A Argonaute, hypothetical 88.2 0.041 1.4E-06 72.2 -3.3 79 1245-1350 194-277 (771)
207 2orv_A Thymidine kinase; TP4A 87.7 0.39 1.3E-05 53.8 4.6 36 320-361 22-57 (234)
208 1jbk_A CLPB protein; beta barr 87.4 1.9 6.4E-05 46.4 10.0 25 318-342 44-68 (195)
209 1a5t_A Delta prime, HOLB; zinc 86.5 1.5 5E-05 52.7 9.3 39 304-342 3-49 (334)
210 3u4q_A ATP-dependent helicase/ 86.3 0.69 2.4E-05 65.6 7.1 127 301-436 8-137 (1232)
211 3crv_A XPD/RAD3 related DNA he 86.1 1.7 5.8E-05 56.1 10.1 88 707-809 379-473 (551)
212 2qby_B CDC6 homolog 3, cell di 86.0 1.6 5.4E-05 53.3 9.5 26 318-343 46-71 (384)
213 3dm5_A SRP54, signal recogniti 86.0 3 0.0001 51.6 11.6 55 320-380 103-159 (443)
214 1fnn_A CDC6P, cell division co 85.8 3.4 0.00012 50.3 12.4 22 319-340 46-67 (389)
215 3syl_A Protein CBBX; photosynt 85.4 0.62 2.1E-05 55.1 5.1 25 318-342 68-92 (309)
216 2qgz_A Helicase loader, putati 84.8 1.3 4.5E-05 52.5 7.5 25 318-342 153-177 (308)
217 2z4s_A Chromosomal replication 84.5 2.4 8.4E-05 52.8 10.2 26 318-343 131-156 (440)
218 1w5s_A Origin recognition comp 84.4 3.5 0.00012 50.7 11.6 24 318-341 51-76 (412)
219 2bjv_A PSP operon transcriptio 84.3 1.8 6.1E-05 49.9 8.3 21 318-338 30-50 (265)
220 1w4r_A Thymidine kinase; type 83.9 0.64 2.2E-05 50.7 3.9 35 320-360 23-57 (195)
221 1d2n_A N-ethylmaleimide-sensit 83.7 2.6 9E-05 48.7 9.4 23 318-340 65-87 (272)
222 2kjq_A DNAA-related protein; s 83.6 0.77 2.6E-05 48.1 4.3 22 318-339 37-58 (149)
223 1xwi_A SKD1 protein; VPS4B, AA 83.6 2.9 9.8E-05 49.8 9.9 23 318-340 46-68 (322)
224 3e2i_A Thymidine kinase; Zn-bi 83.2 1 3.4E-05 49.9 5.0 36 320-361 31-66 (219)
225 4a1f_A DNAB helicase, replicat 82.9 1.9 6.4E-05 51.6 7.7 113 320-440 49-170 (338)
226 3h4m_A Proteasome-activating n 82.6 2.3 7.8E-05 49.5 8.3 22 318-339 52-73 (285)
227 2qz4_A Paraplegin; AAA+, SPG7, 82.2 3.9 0.00013 46.8 10.0 22 318-339 40-61 (262)
228 1gm5_A RECG; helicase, replica 82.1 1.6 5.6E-05 58.2 7.5 98 701-805 398-497 (780)
229 2db2_A KIAA0890 protein; DSRM 82.0 1.4 4.9E-05 42.0 4.8 71 1852-1929 17-90 (119)
230 3eie_A Vacuolar protein sortin 81.3 3.4 0.00012 49.2 9.3 23 318-340 52-74 (322)
231 2zpa_A Uncharacterized protein 80.9 1.2 4E-05 57.8 5.3 112 303-471 175-289 (671)
232 3vfd_A Spastin; ATPase, microt 80.1 3.5 0.00012 50.5 9.1 22 318-339 149-170 (389)
233 3pfi_A Holliday junction ATP-d 80.0 4.1 0.00014 48.7 9.5 21 318-338 56-76 (338)
234 1iqp_A RFCS; clamp loader, ext 79.9 5.6 0.00019 47.0 10.7 23 319-341 48-70 (327)
235 2hjv_A ATP-dependent RNA helic 79.5 4.7 0.00016 42.5 8.7 75 351-434 35-111 (163)
236 1ojl_A Transcriptional regulat 79.2 1.7 5.9E-05 51.3 5.7 21 318-338 26-46 (304)
237 2db2_A KIAA0890 protein; DSRM 78.8 6.3 0.00021 37.7 7.9 73 1764-1836 16-96 (119)
238 3d8b_A Fidgetin-like protein 1 77.2 3.6 0.00012 49.7 7.9 22 318-339 118-139 (357)
239 2qp9_X Vacuolar protein sortin 77.1 4.5 0.00015 48.8 8.6 23 318-340 85-107 (355)
240 2rb4_A ATP-dependent RNA helic 76.9 5.1 0.00018 42.8 8.2 77 350-434 33-110 (175)
241 3u61_B DNA polymerase accessor 76.9 9.5 0.00033 45.1 11.4 33 307-339 33-70 (324)
242 3hjh_A Transcription-repair-co 76.7 6.6 0.00023 49.3 10.1 89 318-415 15-115 (483)
243 4b4t_J 26S protease regulatory 76.6 8.2 0.00028 47.0 10.5 23 318-340 183-205 (405)
244 3b9p_A CG5977-PA, isoform A; A 76.4 5.6 0.00019 46.4 9.1 22 318-339 55-76 (297)
245 2qby_A CDC6 homolog 1, cell di 76.2 11 0.00038 45.5 12.0 24 318-341 46-69 (386)
246 2p6n_A ATP-dependent RNA helic 75.7 8 0.00027 42.1 9.4 74 352-434 55-130 (191)
247 1fuk_A Eukaryotic initiation f 75.1 6.7 0.00023 41.4 8.4 76 351-435 30-107 (165)
248 2jgn_A DBX, DDX3, ATP-dependen 74.7 7.6 0.00026 42.0 8.8 75 350-432 45-120 (185)
249 1g5t_A COB(I)alamin adenosyltr 74.2 7.2 0.00025 42.5 8.3 35 318-358 29-63 (196)
250 1sxj_B Activator 1 37 kDa subu 74.2 6.4 0.00022 46.4 8.9 24 318-341 43-66 (323)
251 2q6t_A DNAB replication FORK h 74.2 11 0.00037 47.0 11.2 110 319-440 202-324 (444)
252 1r6z_P Chimera of maltose-bind 74.1 1.2 4.2E-05 56.8 2.6 77 1235-1346 417-500 (509)
253 2r6a_A DNAB helicase, replicat 73.8 8.2 0.00028 48.3 10.0 110 319-440 205-327 (454)
254 2zan_A Vacuolar protein sortin 73.6 5.3 0.00018 49.9 8.1 23 318-340 168-190 (444)
255 1r6b_X CLPA protein; AAA+, N-t 72.8 11 0.00039 50.3 11.8 24 318-341 208-231 (758)
256 4f1n_A Kpago; argonaute, RNAI, 72.1 3.2 0.00011 56.4 5.9 67 1234-1301 355-446 (1046)
257 2gno_A DNA polymerase III, gam 71.8 9.3 0.00032 45.0 9.2 21 319-339 20-40 (305)
258 3eaq_A Heat resistant RNA depe 71.6 10 0.00034 42.0 9.0 74 351-432 31-105 (212)
259 3oiy_A Reverse gyrase helicase 70.8 7.2 0.00025 48.0 8.4 82 700-788 44-125 (414)
260 4ddu_A Reverse gyrase; topoiso 69.9 7.6 0.00026 54.1 9.1 82 700-788 101-182 (1104)
261 3io5_A Recombination and repai 67.5 5.6 0.00019 46.7 5.9 41 320-364 31-71 (333)
262 1vma_A Cell division protein F 67.1 36 0.0012 39.9 12.9 22 320-341 107-128 (306)
263 2cvh_A DNA repair and recombin 66.9 23 0.00079 38.8 10.9 33 319-360 22-54 (220)
264 2eyq_A TRCF, transcription-rep 66.5 10 0.00035 53.2 9.3 97 701-803 633-730 (1151)
265 3bgw_A DNAB-like replicative h 66.4 11 0.00036 47.0 8.6 114 319-440 199-324 (444)
266 1qvr_A CLPB protein; coiled co 66.2 8.9 0.0003 52.2 8.5 25 318-342 192-216 (854)
267 3pvs_A Replication-associated 66.1 6.6 0.00023 48.9 6.6 22 318-339 51-72 (447)
268 3bh0_A DNAB-like replicative h 65.9 9.7 0.00033 45.0 7.8 48 319-373 70-117 (315)
269 3htx_A HEN1; HEN1, small RNA m 65.2 4.9 0.00017 52.9 5.2 70 1850-1927 15-94 (950)
270 1hqc_A RUVB; extended AAA-ATPa 64.5 4.8 0.00016 47.6 4.8 22 318-339 39-60 (324)
271 1n0w_A DNA repair protein RAD5 64.2 17 0.00056 40.7 9.1 43 318-360 25-67 (243)
272 3i5x_A ATP-dependent RNA helic 64.1 26 0.00089 44.9 12.1 102 324-435 315-419 (563)
273 3bor_A Human initiation factor 63.6 26 0.00088 39.2 10.5 97 700-804 75-179 (237)
274 3sqw_A ATP-dependent RNA helic 62.9 28 0.00097 44.8 12.1 81 349-436 286-369 (579)
275 1xp8_A RECA protein, recombina 62.8 14 0.00048 44.6 8.4 40 318-363 75-114 (366)
276 3n70_A Transport activator; si 62.7 5.3 0.00018 41.2 4.1 20 318-337 25-44 (145)
277 3co5_A Putative two-component 62.3 4.4 0.00015 41.8 3.4 20 318-337 28-47 (143)
278 1cr0_A DNA primase/helicase; R 61.3 11 0.00038 44.0 7.1 37 319-360 37-73 (296)
279 1sxj_E Activator 1 40 kDa subu 60.7 18 0.00063 43.1 9.1 24 318-341 37-60 (354)
280 2fna_A Conserved hypothetical 60.5 63 0.0021 38.1 13.9 35 304-339 17-52 (357)
281 2i4i_A ATP-dependent RNA helic 59.8 30 0.001 42.1 11.1 75 350-432 275-350 (417)
282 1q57_A DNA primase/helicase; d 59.8 7.7 0.00026 49.3 5.7 47 319-371 244-290 (503)
283 3fe2_A Probable ATP-dependent 57.5 39 0.0013 37.8 10.6 106 720-834 101-216 (242)
284 3i32_A Heat resistant RNA depe 57.4 18 0.00062 42.4 7.9 74 351-432 28-102 (300)
285 1ztd_A Hypothetical protein PF 57.2 30 0.001 32.8 7.4 47 1403-1459 13-61 (133)
286 1t5i_A C_terminal domain of A 56.7 19 0.00066 38.1 7.4 77 351-435 31-108 (172)
287 2px0_A Flagellar biosynthesis 56.7 32 0.0011 40.1 9.9 24 318-341 106-129 (296)
288 1t6n_A Probable ATP-dependent 56.1 61 0.0021 35.4 11.8 97 700-804 59-164 (220)
289 2v1x_A ATP-dependent DNA helic 55.9 23 0.00077 45.8 9.2 75 350-432 266-341 (591)
290 1qde_A EIF4A, translation init 55.0 38 0.0013 37.2 9.9 95 700-804 59-161 (224)
291 2ce7_A Cell division protein F 54.8 13 0.00045 46.5 6.5 22 318-339 50-71 (476)
292 3hr8_A Protein RECA; alpha and 54.6 9.9 0.00034 45.7 5.1 39 319-363 63-101 (356)
293 2w58_A DNAI, primosome compone 54.6 8.4 0.00029 42.0 4.2 25 318-342 55-79 (202)
294 2zr9_A Protein RECA, recombina 53.6 8 0.00027 46.5 4.1 38 318-361 62-99 (349)
295 2oxc_A Probable ATP-dependent 53.6 31 0.0011 38.3 8.9 79 700-788 69-150 (230)
296 1e9r_A Conjugal transfer prote 53.0 13 0.00045 46.0 6.2 43 317-365 53-95 (437)
297 1wp9_A ATP-dependent RNA helic 51.4 39 0.0013 41.7 10.3 97 326-434 340-445 (494)
298 2gxq_A Heat resistant RNA depe 51.1 93 0.0032 33.4 12.1 94 700-804 46-150 (207)
299 3ber_A Probable ATP-dependent 50.7 73 0.0025 35.8 11.5 125 701-834 89-226 (249)
300 3ho1_A Argonaute; argonaute, p 50.7 5.1 0.00018 51.8 1.8 56 1235-1302 189-244 (685)
301 1vec_A ATP-dependent RNA helic 50.6 1.1E+02 0.0038 32.8 12.6 95 701-804 49-152 (206)
302 2d7d_A Uvrabc system protein B 50.5 62 0.0021 42.3 12.2 82 351-440 445-527 (661)
303 2p65_A Hypothetical protein PF 50.1 12 0.0004 39.8 4.3 24 318-341 44-67 (187)
304 3ly5_A ATP-dependent RNA helic 50.0 39 0.0013 38.4 9.1 75 720-803 125-206 (262)
305 2yjt_D ATP-dependent RNA helic 55.4 3.4 0.00012 44.0 0.0 73 351-432 30-104 (170)
306 3pey_A ATP-dependent RNA helic 49.7 33 0.0011 41.2 9.0 80 350-437 242-322 (395)
307 3fht_A ATP-dependent RNA helic 48.9 28 0.00096 42.3 8.2 76 351-434 266-342 (412)
308 2oca_A DAR protein, ATP-depend 46.9 1.7E+02 0.0057 36.6 15.2 93 352-454 348-442 (510)
309 2pl3_A Probable ATP-dependent 46.7 41 0.0014 37.3 8.5 59 720-788 96-154 (236)
310 1s2m_A Putative ATP-dependent 46.2 36 0.0012 41.2 8.5 76 350-433 257-333 (400)
311 2zts_A Putative uncharacterize 46.1 16 0.00055 41.0 4.9 48 319-372 32-79 (251)
312 3iuy_A Probable ATP-dependent 45.7 39 0.0013 37.3 8.0 59 720-788 93-151 (228)
313 3htx_A HEN1; HEN1, small RNA m 44.3 17 0.00059 47.9 5.1 77 1853-1929 395-504 (950)
314 2xxa_A Signal recognition part 44.2 37 0.0013 41.9 8.0 56 319-379 102-159 (433)
315 2v3c_C SRP54, signal recogniti 44.0 22 0.00075 43.9 6.0 26 318-343 100-125 (432)
316 1xti_A Probable ATP-dependent 42.4 1.6E+02 0.0054 35.1 13.5 97 700-804 53-158 (391)
317 2ffh_A Protein (FFH); SRP54, s 42.3 56 0.0019 40.1 9.1 54 320-379 101-156 (425)
318 1ls1_A Signal recognition part 42.0 1.6E+02 0.0054 34.1 12.7 23 319-341 100-122 (295)
319 1c4o_A DNA nucleotide excision 41.3 1.3E+02 0.0045 39.3 13.1 81 351-439 439-520 (664)
320 1wrb_A DJVLGB; RNA helicase, D 41.1 52 0.0018 37.0 8.3 59 721-788 100-158 (253)
321 3cf2_A TER ATPase, transitiona 41.0 33 0.0011 45.6 7.3 21 318-338 239-259 (806)
322 2dr3_A UPF0273 protein PH0284; 40.1 23 0.00078 39.6 4.9 48 318-372 24-71 (247)
323 3dkp_A Probable ATP-dependent 38.9 35 0.0012 38.2 6.2 81 700-788 74-157 (245)
324 3u4q_B ATP-dependent helicase/ 38.7 40 0.0014 47.4 8.1 71 321-417 5-75 (1166)
325 3a8t_A Adenylate isopentenyltr 38.7 10 0.00035 45.0 1.7 22 318-339 41-62 (339)
326 4b4t_M 26S protease regulatory 38.0 15 0.00051 45.3 3.0 23 318-340 216-238 (434)
327 2r44_A Uncharacterized protein 38.0 17 0.00058 43.1 3.5 22 318-339 47-68 (331)
328 3fmo_B ATP-dependent RNA helic 37.7 90 0.0031 36.2 9.7 124 700-835 139-277 (300)
329 3t15_A Ribulose bisphosphate c 37.5 16 0.00056 42.5 3.2 24 318-341 37-60 (293)
330 2z43_A DNA repair and recombin 37.4 30 0.001 40.9 5.6 54 318-371 108-162 (324)
331 3foz_A TRNA delta(2)-isopenten 37.0 17 0.00058 42.5 3.2 21 320-340 13-33 (316)
332 1gku_B Reverse gyrase, TOP-RG; 37.0 39 0.0014 46.8 7.4 80 701-788 80-163 (1054)
333 3exa_A TRNA delta(2)-isopenten 37.0 14 0.00046 43.5 2.3 21 320-340 6-26 (322)
334 1fuu_A Yeast initiation factor 36.3 88 0.003 37.4 9.8 79 700-788 66-146 (394)
335 1hv8_A Putative ATP-dependent 36.3 89 0.003 36.9 9.7 79 700-788 52-131 (367)
336 3trf_A Shikimate kinase, SK; a 35.7 19 0.00064 38.5 3.1 23 318-340 6-28 (185)
337 4b4t_L 26S protease subunit RP 35.7 17 0.00058 44.8 3.0 23 318-340 216-238 (437)
338 1ofh_A ATP-dependent HSL prote 35.5 20 0.00069 41.7 3.6 23 318-340 51-73 (310)
339 3e70_C DPA, signal recognition 35.4 5.8E+02 0.02 29.8 16.2 44 426-471 211-254 (328)
340 4b4t_K 26S protease regulatory 34.9 18 0.00063 44.4 3.2 23 318-340 207-229 (428)
341 2j0s_A ATP-dependent RNA helic 34.7 1.1E+02 0.0039 36.8 10.4 80 700-788 82-163 (410)
342 2r8r_A Sensor protein; KDPD, P 33.8 30 0.001 38.5 4.4 25 319-343 8-32 (228)
343 2db3_A ATP-dependent RNA helic 33.8 46 0.0016 41.1 6.6 60 720-788 128-187 (434)
344 3hws_A ATP-dependent CLP prote 33.5 20 0.00067 43.2 3.1 23 318-340 52-74 (363)
345 2ze6_A Isopentenyl transferase 33.3 22 0.00076 40.4 3.4 20 320-339 4-23 (253)
346 4b4t_I 26S protease regulatory 33.2 21 0.00071 43.7 3.2 23 318-340 217-239 (437)
347 3eph_A TRNA isopentenyltransfe 32.9 23 0.00079 43.0 3.5 21 320-340 5-25 (409)
348 1lv7_A FTSH; alpha/beta domain 32.8 21 0.00072 40.5 3.1 22 318-339 46-67 (257)
349 1z5z_A Helicase of the SNF2/RA 32.5 64 0.0022 37.0 7.1 94 327-433 94-190 (271)
350 1tue_A Replication protein E1; 32.1 20 0.00069 39.3 2.5 22 319-340 60-81 (212)
351 1njg_A DNA polymerase III subu 31.9 40 0.0014 37.0 5.3 37 305-341 28-69 (250)
352 3cf0_A Transitional endoplasmi 31.6 22 0.00074 41.6 2.9 22 318-339 50-71 (301)
353 4b4t_H 26S protease regulatory 31.5 19 0.00065 44.5 2.5 23 318-340 244-266 (467)
354 3crm_A TRNA delta(2)-isopenten 31.4 20 0.0007 42.2 2.6 22 319-340 7-28 (323)
355 3uk6_A RUVB-like 2; hexameric 31.2 23 0.0008 42.5 3.3 24 318-341 71-94 (368)
356 1u94_A RECA protein, recombina 31.2 33 0.0011 41.1 4.5 40 318-363 64-103 (356)
357 3d3q_A TRNA delta(2)-isopenten 30.7 23 0.00078 42.1 2.9 22 319-340 9-30 (340)
358 1um8_A ATP-dependent CLP prote 30.5 23 0.0008 42.8 3.1 22 318-339 73-94 (376)
359 1q0u_A Bstdead; DEAD protein, 30.1 43 0.0015 36.8 5.0 80 700-788 49-134 (219)
360 2j37_W Signal recognition part 30.0 2.8E+02 0.0095 34.7 12.8 56 319-380 103-160 (504)
361 2r62_A Cell division protease 29.9 17 0.00057 41.6 1.5 23 318-340 45-67 (268)
362 2c9o_A RUVB-like 1; hexameric 29.9 24 0.00082 44.0 3.1 23 318-340 64-86 (456)
363 1p9r_A General secretion pathw 29.4 53 0.0018 40.3 6.0 33 305-337 152-187 (418)
364 4ag6_A VIRB4 ATPase, type IV s 29.3 37 0.0013 41.3 4.6 40 318-363 36-75 (392)
365 3nbx_X ATPase RAVA; AAA+ ATPas 29.0 21 0.00073 44.9 2.4 21 318-338 42-62 (500)
366 3eiq_A Eukaryotic initiation f 28.9 97 0.0033 37.4 8.4 81 700-788 85-167 (414)
367 1oyw_A RECQ helicase, ATP-depe 28.5 67 0.0023 40.7 7.0 59 721-788 65-123 (523)
368 3nwn_A Kinesin-like protein KI 28.3 28 0.00096 41.7 3.1 16 320-335 108-123 (359)
369 3iij_A Coilin-interacting nucl 28.2 35 0.0012 36.2 3.6 23 318-340 12-34 (180)
370 2oap_1 GSPE-2, type II secreti 28.0 40 0.0014 42.5 4.7 33 304-336 245-279 (511)
371 2yhs_A FTSY, cell division pro 27.4 5.2E+02 0.018 32.1 14.3 20 320-339 296-315 (503)
372 1ny5_A Transcriptional regulat 27.3 37 0.0012 41.3 4.0 19 318-336 161-179 (387)
373 3vaa_A Shikimate kinase, SK; s 27.1 31 0.0011 37.3 3.1 23 318-340 26-48 (199)
374 1v5w_A DMC1, meiotic recombina 27.1 43 0.0015 39.9 4.5 51 312-362 111-167 (343)
375 1zuh_A Shikimate kinase; alpha 26.5 33 0.0011 35.8 3.0 23 318-340 8-30 (168)
376 1v8k_A Kinesin-like protein KI 26.5 33 0.0011 41.8 3.3 17 320-336 158-174 (410)
377 4a2p_A RIG-I, retinoic acid in 26.4 68 0.0023 40.6 6.6 98 326-434 369-479 (556)
378 2w0m_A SSO2452; RECA, SSPF, un 26.4 52 0.0018 36.1 4.8 36 318-359 24-59 (235)
379 2qmh_A HPR kinase/phosphorylas 25.9 30 0.001 37.8 2.5 22 318-339 35-56 (205)
380 2xau_A PRE-mRNA-splicing facto 25.8 1.2E+02 0.004 40.5 8.8 76 350-432 302-393 (773)
381 4fcw_A Chaperone protein CLPB; 25.8 30 0.001 40.2 2.9 23 319-341 49-71 (311)
382 2z8u_A Tata-box-binding protei 25.7 3.4E+02 0.012 29.1 10.7 41 1790-1832 56-96 (188)
383 3pxg_A Negative regulator of g 25.5 43 0.0015 41.8 4.3 24 318-341 202-225 (468)
384 1qhx_A CPT, protein (chloramph 25.0 33 0.0011 36.2 2.7 21 319-339 5-25 (178)
385 2chq_A Replication factor C sm 24.8 54 0.0018 38.1 4.8 24 318-341 39-62 (319)
386 2iut_A DNA translocase FTSK; n 24.7 53 0.0018 41.8 4.8 41 318-360 215-255 (574)
387 2i1q_A DNA repair and recombin 24.6 69 0.0024 37.6 5.7 55 318-372 99-164 (322)
388 1bg2_A Kinesin; motor protein, 24.4 35 0.0012 40.3 3.0 16 320-335 81-96 (325)
389 3kb2_A SPBC2 prophage-derived 24.4 42 0.0014 34.9 3.4 21 319-339 3-23 (173)
390 3dmq_A RNA polymerase-associat 24.3 59 0.002 44.6 5.7 80 350-436 502-584 (968)
391 4a2q_A RIG-I, retinoic acid in 24.3 73 0.0025 42.7 6.5 97 327-434 611-720 (797)
392 2z0m_A 337AA long hypothetical 24.0 1.3E+02 0.0045 34.8 8.1 75 700-788 39-113 (337)
393 3dc4_A Kinesin-like protein NO 24.0 34 0.0012 40.7 2.8 15 320-334 98-112 (344)
394 1t5c_A CENP-E protein, centrom 23.8 38 0.0013 40.4 3.1 16 320-335 81-96 (349)
395 3b6u_A Kinesin-like protein KI 23.8 38 0.0013 40.7 3.1 16 320-335 105-120 (372)
396 1via_A Shikimate kinase; struc 23.5 47 0.0016 34.9 3.6 23 318-340 5-27 (175)
397 2vvg_A Kinesin-2; motor protei 23.4 38 0.0013 40.4 3.0 15 320-334 93-107 (350)
398 3tbk_A RIG-I helicase domain; 23.3 82 0.0028 39.8 6.5 94 328-432 370-476 (555)
399 1x88_A Kinesin-like protein KI 23.3 39 0.0013 40.5 3.1 16 320-335 92-107 (359)
400 3t0q_A AGR253WP; kinesin, alph 23.2 39 0.0013 40.4 3.0 25 311-335 77-104 (349)
401 2nr8_A Kinesin-like protein KI 23.0 40 0.0014 40.3 3.1 16 320-335 107-122 (358)
402 2y65_A Kinesin, kinesin heavy 22.9 39 0.0013 40.6 3.0 16 320-335 88-103 (365)
403 4a2w_A RIG-I, retinoic acid in 22.9 74 0.0025 43.5 6.2 80 349-435 629-721 (936)
404 2heh_A KIF2C protein; kinesin, 22.8 39 0.0013 40.9 2.9 17 320-336 138-154 (387)
405 2r2a_A Uncharacterized protein 22.7 45 0.0015 36.4 3.2 20 320-339 8-27 (199)
406 3gbj_A KIF13B protein; kinesin 22.6 41 0.0014 40.2 3.1 16 320-335 96-111 (354)
407 1f9v_A Kinesin-like protein KA 22.5 37 0.0013 40.5 2.6 24 312-335 77-103 (347)
408 1goj_A Kinesin, kinesin heavy 22.5 40 0.0014 40.3 3.0 16 320-335 84-99 (355)
409 1g41_A Heat shock protein HSLU 22.5 41 0.0014 41.5 3.1 22 318-339 51-72 (444)
410 1g8p_A Magnesium-chelatase 38 22.5 30 0.001 41.1 1.9 22 318-339 46-67 (350)
411 3lw7_A Adenylate kinase relate 22.4 39 0.0013 35.1 2.6 18 320-337 4-21 (179)
412 2zfi_A Kinesin-like protein KI 22.3 41 0.0014 40.5 3.0 16 320-335 93-108 (366)
413 2h58_A Kinesin-like protein KI 22.3 41 0.0014 39.8 2.9 26 310-335 71-99 (330)
414 4a14_A Kinesin, kinesin-like p 22.0 41 0.0014 40.1 2.9 15 320-334 87-101 (344)
415 1sxj_C Activator 1 40 kDa subu 21.9 58 0.002 38.6 4.3 23 319-341 48-70 (340)
416 1sxj_D Activator 1 41 kDa subu 21.8 67 0.0023 38.0 4.9 24 318-341 59-82 (353)
417 1ixz_A ATP-dependent metallopr 21.8 42 0.0014 37.8 2.9 21 318-338 50-70 (254)
418 4etp_A Kinesin-like protein KA 21.8 43 0.0015 40.8 3.1 25 311-335 132-159 (403)
419 3lre_A Kinesin-like protein KI 21.7 42 0.0014 40.2 2.9 16 320-335 109-124 (355)
420 3pxi_A Negative regulator of g 21.7 48 0.0017 44.2 3.9 24 318-341 202-225 (758)
421 2wbe_C Bipolar kinesin KRP-130 21.5 41 0.0014 40.5 2.8 16 320-335 104-119 (373)
422 2rhm_A Putative kinase; P-loop 21.4 53 0.0018 34.9 3.5 22 319-340 7-28 (193)
423 1y63_A LMAJ004144AAA protein; 21.2 47 0.0016 35.4 2.9 22 318-339 11-32 (184)
424 1kht_A Adenylate kinase; phosp 21.1 52 0.0018 34.9 3.3 22 319-340 5-26 (192)
425 3lda_A DNA repair protein RAD5 21.1 79 0.0027 38.5 5.3 43 319-361 180-222 (400)
426 1j8m_F SRP54, signal recogniti 21.1 1.4E+02 0.0048 34.6 7.3 23 320-342 101-123 (297)
427 3cob_A Kinesin heavy chain-lik 21.0 42 0.0014 40.3 2.8 24 311-334 71-97 (369)
428 1ry6_A Internal kinesin; kines 21.0 38 0.0013 40.6 2.3 16 320-335 88-103 (360)
429 3hu3_A Transitional endoplasmi 20.9 43 0.0015 42.0 2.9 21 318-338 239-259 (489)
430 1kgd_A CASK, peripheral plasma 20.6 52 0.0018 34.9 3.2 20 319-338 7-26 (180)
431 3tau_A Guanylate kinase, GMP k 20.2 50 0.0017 36.0 3.0 19 320-338 11-29 (208)
432 2iyv_A Shikimate kinase, SK; t 20.1 57 0.002 34.5 3.4 22 319-340 4-25 (184)
433 2owm_A Nckin3-434, related to 20.1 47 0.0016 41.0 2.9 16 320-335 140-155 (443)
434 1nks_A Adenylate kinase; therm 20.1 58 0.002 34.5 3.5 23 319-341 3-25 (194)
435 2c95_A Adenylate kinase 1; tra 20.0 59 0.002 34.7 3.5 23 318-340 10-32 (196)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=2.3e-71 Score=722.80 Aligned_cols=415 Identities=25% Similarity=0.354 Sum_probs=336.3
Q ss_pred CccccCCcEEEcccCC-CeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccc
Q 000174 1231 NAGDLEGRIVTAAHSG-KRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKN 1309 (1931)
Q Consensus 1231 ~~~~l~~~vv~~~~~~-~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n 1309 (1931)
+.++|.|+||+|+||+ +.|+|.+|++|+||.|+||... .+.||.+||+++|++++.+.+||||.++++.+.
T Consensus 152 ~~~~l~g~vV~t~ynn~r~Y~i~~id~d~~P~S~F~~~~------~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~-- 223 (756)
T 2qvw_A 152 LSASLHGRMVATPEISWSLYVVLGIDSTQTSLSYFTRAN------ESITYMRYYATAHNIHLRAADLPLVAAVRLDDL-- 223 (756)
T ss_dssp CTTTSTTCEEEETTTTTEEEEEEEEEEEEETTSEEEETT------EEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTT--
T ss_pred hHHHhCCCEEecCCCCceEEEEEEecCCCCCCCcCCCCC------CCCCHHHHHHHHcCcccccCCCCeEEEEecccc--
Confidence 4567899999999999 7888999999999999999653 589999999999999999999999999988644
Q ss_pred cCCCccccccccccccccccccceEEEcCCcccccccCChHHHH--HhhchhhHHHHHHHHHHHHH-HhhhcCCCC-Chh
Q 000174 1310 LLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVR--GAQRLPSIMRRVESMLLAIQ-LKDKINYPV-PAS 1385 (1931)
Q Consensus 1310 ~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~--~~~~lPsi~~rl~~~l~a~~-l~~~l~~~~-~~~ 1385 (1931)
++++...+. ..+...++ .++||||+|.++++|+++|+ .+++|||||||||++++|.+ ++..+.... -+.
T Consensus 224 -~~~r~~~~~----~~~~~~~~--~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~~~p~~~~i~~ 296 (756)
T 2qvw_A 224 -KDHQIPAPG----SWDDLAPK--LRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDKSFPDCGRIGG 296 (756)
T ss_dssp -TTCCCCSTT----C-CCSCSS--CEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGGGSCCCSCCHH
T ss_pred -ccccccccc----ccccCCcc--ceeeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCcccccCH
Confidence 443322111 11111222 47899999999999999999 99999999999999999976 765332221 134
Q ss_pred HHHHHhccccCCCC---------------------CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccH
Q 000174 1386 KILEALTAASCQET---------------------FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNL 1444 (1931)
Q Consensus 1386 ~ll~AlT~~s~~~~---------------------~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~ 1444 (1931)
.+|+|||+++|.+. .|||||||||||||++++|.|||.+||+.+||+||.+|+.+|||.
T Consensus 297 ~~leAlT~~~~~~~g~~~~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~ 376 (756)
T 2qvw_A 297 ERYFAITAGLRLDQGRGRGLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNE 376 (756)
T ss_dssp HHHHHHHHHHBCSCCBTTBSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHhhhhhhhhccccchhhhhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCch
Confidence 67899988877654 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCC
Q 000174 1445 VLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDS 1524 (1931)
Q Consensus 1445 ~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1931)
+|+++|+++||++||+..++..
T Consensus 377 ~La~~A~~lgL~~~l~~~~~e~---------------------------------------------------------- 398 (756)
T 2qvw_A 377 ALNYLVQTLGLPQLAEFSNNLV---------------------------------------------------------- 398 (756)
T ss_dssp HHHHHHHHTTCTTTCBCCSCC-----------------------------------------------------------
T ss_pred HHHHHHHHcChHHHhccCCCCC----------------------------------------------------------
Confidence 9999999999999998754210
Q ss_pred CCccccccchhhhHHHHHhhheeec-cCHHHHHHHHh-------------------------------------------
Q 000174 1525 SSYRVLSSKTLADVVEALIGVYYVE-GGKDAANHLMK------------------------------------------- 1560 (1931)
Q Consensus 1525 ~~~~~~~~K~lADvvEALiGA~~l~-~G~~~a~~~~~------------------------------------------- 1560 (1931)
..+|.+||+|||+|||+|+| +|.+.|..|+.
T Consensus 399 -----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ 473 (756)
T 2qvw_A 399 -----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDY 473 (756)
T ss_dssp ------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred -----CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhH
Confidence 13689999999999999999 99988876652
Q ss_pred --------------------------------HhhccccCC-------CC-----------c-------------CCC--
Q 000174 1561 --------------------------------WIGIQVESD-------PE-----------E-------------VGC-- 1575 (1931)
Q Consensus 1561 --------------------------------~l~i~~~~~-------~~-----------~-------------~~~-- 1575 (1931)
|+|+.+.+. +. + .++
T Consensus 474 ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~ 553 (756)
T 2qvw_A 474 ACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTD 553 (756)
T ss_dssp TTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---
T ss_pred HhhhccccchhhHHHHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceecccccccccccc
Confidence 332221100 00 0 000
Q ss_pred ------CC---------CCCCC----------CccccchhhHHHHHHHcCCCcCC-------------------------
Q 000174 1576 ------PS---------RPACV----------PESVLRSVDFHALEDALKIKFKD------------------------- 1605 (1931)
Q Consensus 1576 ------~~---------~~~~~----------p~~~~~~~~~~~le~~lgy~F~~------------------------- 1605 (1931)
.. ..... |........+..+|++|||+|+|
T Consensus 554 ~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~ 633 (756)
T 2qvw_A 554 KNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPF 633 (756)
T ss_dssp ------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHH
T ss_pred ccccccccCCchhhhhcccccCccccccccccccchhhhhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccc
Confidence 00 00000 11112334588999999999999
Q ss_pred -HHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcC--chhh
Q 000174 1606 -RGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK--LHVH 1682 (1931)
Q Consensus 1606 -~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~g--l~~~ 1682 (1931)
+.||.+||||+| ||||||||||||+++|++|||.+||++++|.||.+|+++|||++||.+|+++| |++|
T Consensus 634 ~~~LL~~AlTH~S--------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~ 705 (756)
T 2qvw_A 634 LIRLLQIALTPHV--------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEV 705 (756)
T ss_dssp HHHHHHHHHSTGG--------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHH
T ss_pred cHHHHHHHhcCcc--------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHH
Confidence 899999999998 89999999999999999999999999999999999999999999999999999 9999
Q ss_pred hccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeeeccCCCCCCCC
Q 000174 1683 LRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDPMVTP 1760 (1931)
Q Consensus 1683 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~~i~~ 1760 (1931)
|+.+.++. ...+|++||+|||+|||||+|+|++ .+++|+.+++.+.++.
T Consensus 706 l~~~~~e~---------------------------~~~~kilaD~~EAliGAiylD~G~~--~a~~~v~~~~~~~l~~ 754 (756)
T 2qvw_A 706 IIESHPKI---------------------------QPDSKVYGDTFEAILAAILLACGEE--AAGAFVREHVLPQVVA 754 (756)
T ss_dssp HHHHSTTC---------------------------CTTCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHTGGGCCC
T ss_pred HhcCchhh---------------------------cCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhhc
Confidence 99876542 1569999999999999999999975 6788899888887654
No 2
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.2e-42 Score=470.95 Aligned_cols=607 Identities=22% Similarity=0.316 Sum_probs=320.5
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
+++..+++.+||+||.++++.++. +|+|+++|||+|||++|++++.+.+.... .+.+.++|||+||++|+.||.++++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-QGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC-TTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc-cCCCCeEEEEECCHHHHHHHHHHHH
Confidence 456778999999999999999988 89999999999999999999988776421 1223679999999999999999999
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHH
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+++ ++++..++|+..... .|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~----~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENV----PVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSS----CHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHhccCCceEEEEeCCccccc----cHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHH
Confidence 987 799999999876432 2333446799999999999999998877 79999999999999999989999998
Q ss_pred HHHHhhc---CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccc
Q 000174 449 SEFYHTT---SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKA 523 (1931)
Q Consensus 449 ~~~~~~~---~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~ 523 (1931)
..++... .....|++|+|||||..++. .+..+....+..+...++..+... ....++..++..|......+...
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~-~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDA-KTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSC-CSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCC
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCcc-ccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcc
Confidence 8776642 11245999999999986554 344555667777777777766554 45678888999998776655432
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhh-hhhhhcccccchhhHHHHhhhccc------ccccchhhHHHHHHHHHHHHHH
Q 000174 524 ASLWSLHEQLKQMEVAVEEAAQSSSRR-SKWQFMGARDAGAKEELRQVYGVS------ERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 524 ~~~~~l~~~i~~l~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~------~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
. ...+...+..+...+.......... ........+..+.......+.... ..........+...+. ...
T Consensus 238 ~-~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~ 313 (696)
T 2ykg_A 238 I-SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALF---LYT 313 (696)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHH---HHH
T ss_pred c-CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHH---HHH
Confidence 1 1122222222222222111100000 000001111111111111110000 0000000000000000 001
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
..+..+.....+ . .. ........|+......+... . ...+....
T Consensus 314 ~~l~~~~~~~~i----~---~~------~~~~~~~~~l~~~~~~~~~~----~-------------------~~~~~~~~ 357 (696)
T 2ykg_A 314 SHLRKYNDALII----S---EH------ARMKDALDYLKDFFSNVRAA----G-------------------FDEIEQDL 357 (696)
T ss_dssp HHHHHHHHHHHH----H---HH------SCHHHHHHHHHHHHHHHHTT----C-------------------CCHHHHHH
T ss_pred HHHHHHhHHHhc----c---ch------hhHHHHHHHHHHHHHHHhhc----c-------------------cchHHHHH
Confidence 111111000000 0 00 00000011222211111000 0 00000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
... ..+...............++|+..|.++|... ...++.++||||+++.+++.|++.|...+.+.++++..+
T Consensus 358 ~~~-----~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l 432 (696)
T 2ykg_A 358 TQR-----FEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGIL 432 (696)
T ss_dssp HHH-----HHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-
T ss_pred HHH-----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEE
Confidence 000 00000000000001113478999999999875 334568999999999999999999998654555899999
Q ss_pred EccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-EEE
Q 000174 756 IGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-YIL 830 (1931)
Q Consensus 756 ~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-~iv 830 (1931)
||++. .++|++.+|++++++|++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||.... +++
T Consensus 433 ~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~ 511 (696)
T 2ykg_A 433 TGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 511 (696)
T ss_dssp ----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEE
T ss_pred EccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEE
Confidence 77432 238999999999999998 999999999999999999999999999999999999999999 887544 444
Q ss_pred EEecCChhHHHHHHHHHHHHHHHHHHHH------------------------hhcccccc-cccc----cccccCCC---
Q 000174 831 MIERGNLSHATFLRNARNSEETLRKEAI------------------------ERTDLSHL-KDTS----RLISVDAV--- 878 (1931)
Q Consensus 831 lv~~~~~~~~~~l~~~~~~e~~l~~~~i------------------------~r~~l~~~-~~~~----~~~~~~~~--- 878 (1931)
++..++......+ ...++.|.+..+ .+...... +... ......+.
T Consensus 512 l~~~~~~~~~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 588 (696)
T 2ykg_A 512 LTSNAGVIEKEQI---NMYKEKMMNDSILRLQTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALA 588 (696)
T ss_dssp EESCHHHHHHHHH---HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCSCEEEEESSSCCEE
T ss_pred EecCCCHHHHHHH---HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhhhccCCCcee
Confidence 4444332211111 111111100000 00000000 0000 00000000
Q ss_pred -CCccceeCCCCcEEcccchHHHHHHHhhcCCC-----CCCCccCceEEEE--ecCCCCCCce-EEEEEEcC---CCCCC
Q 000174 879 -PGTVYQVESTGAVVSLNSAVGLIHFYCSQLPS-----DRYSILRPEFIME--RHEKPGGPTE-YSCKLQLP---CNAPF 946 (1931)
Q Consensus 879 -~~~~y~v~~tgA~lt~~~Ai~ll~~yC~~Lp~-----d~~~~~~P~~~~~--~~~~~~~~~~-~~~~v~LP---~~~p~ 946 (1931)
+....++-..+..++++++ +.++||+.+|+ +.|+...|. ... ..+..-|..+ |+ ++.|| +++++
T Consensus 589 ~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~c~~~~c~~~~g~~~~~~-~~~lp~~~~~~~~ 664 (696)
T 2ykg_A 589 CYTADVRVIEDCHYTVLGDA--FKECFVSRPHPKPKQFSSFEKRAKI-FCARQNCSHDWGIHVKYK-TFEIPVIKIESFV 664 (696)
T ss_dssp EEGGGEEEETTTEEEECSTT--GGGTEEEEEEEEEEECSSCEEEEEE-EESSTTTCCEEEEEEEET-TEEEEEECGGGEE
T ss_pred eecchhhhhcCCCeeecCHH--hHhHeeeccCCccccccccccCCce-EeCCCCCCccccceEEEc-ceecceeeeeeEE
Confidence 0011123346778888888 89999999988 778777665 232 1221222233 44 88999 88887
Q ss_pred C-c-ccCCCCCCHHH
Q 000174 947 E-K-LEGPVCSSMRL 959 (1931)
Q Consensus 947 ~-~-~~g~~~~sk~~ 959 (1931)
. . ..|.++.-+|+
T Consensus 665 ~~~~~~~~~~~~~~w 679 (696)
T 2ykg_A 665 VEDIATGVQTLYSKW 679 (696)
T ss_dssp EEETTTCCEEECSCG
T ss_pred EEecCCCcchhhhhh
Confidence 5 3 45655444444
No 3
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-41 Score=447.04 Aligned_cols=477 Identities=23% Similarity=0.382 Sum_probs=260.4
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
++..+|||||.++++.++. +|+|++++||+|||++|++|+.+.+.... .+.+.++||||||++|+.||.+++++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc-ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4567899999999999988 89999999999999999999988776421 1225679999999999999999999975
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++++..++|+.... ..|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..++.
T Consensus 82 ~~~~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC---------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcc----hhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHH
Confidence 79999999987543 33445556799999999999999999887 8999999999999999988889988877776
Q ss_pred hcCC--CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCe-EEEec-chHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 454 TTSK--EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSV-VCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 454 ~~~~--~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~-i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
.... ...+++|+|||||...+. ....+....+..++..++.. +.+.. ....+..++..|......+... ....+
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~-~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 235 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 235 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTC-SSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-SCCHH
T ss_pred hhhcccCCCCeEEEEeCCcccCch-hhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCC-cCChH
Confidence 4322 235899999999975443 23445556788888888854 44443 5677888899998887776632 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhccc------ccccchhhHHHHHHHHH----------HH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVS------ERTESDGAANLIQKLRA----------IN 593 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------~r~~~~~~~~l~~~~~~----------~~ 593 (1931)
...+..+...+.....................+.......+..+. ..........+...+.. ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 315 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322222110000000000001111100000000000 00000000000000000 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
......+.+.+...+..++..+.... .. .....+...+..
T Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~-~~~~~~~~~~~~---------------------------------- 355 (556)
T 4a2p_A 316 IISEDARIIDALSYLTEFFTNVKNGP-----YT-ELEQHLTAKFQE---------------------------------- 355 (556)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSC-----CC-HHHHHHHHHHHT----------------------------------
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcC-----CC-HHHHHHHHHHhh----------------------------------
Confidence 01111111222111111111110000 00 000000000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
...+...........++|+..|.++|.+. ....+.++||||+++.+++.|++.|...+.+.++++
T Consensus 356 --------------~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~ 421 (556)
T 4a2p_A 356 --------------KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 421 (556)
T ss_dssp --------------THHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCE
T ss_pred --------------HHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeee
Confidence 00000001111224589999999999764 224678999999999999999999998655556777
Q ss_pred EEEEccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-
Q 000174 753 ASLIGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD- 827 (1931)
Q Consensus 753 ~~l~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~- 827 (1931)
..++|.+. .++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||.+..
T Consensus 422 ~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~ 500 (556)
T 4a2p_A 422 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 500 (556)
T ss_dssp EC------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC---------CC
T ss_pred eEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 77777432 137999999999999999 999999999999999999999999999999999999999999 776433
Q ss_pred EEEEEecCCh
Q 000174 828 YILMIERGNL 837 (1931)
Q Consensus 828 ~ivlv~~~~~ 837 (1931)
+++|+..++.
T Consensus 501 ~~~l~~~~~~ 510 (556)
T 4a2p_A 501 CILVTSKTEV 510 (556)
T ss_dssp EEEEESCHHH
T ss_pred EEEEEeCcch
Confidence 5555554443
No 4
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-40 Score=451.84 Aligned_cols=477 Identities=23% Similarity=0.377 Sum_probs=269.8
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
.++..|||||.++++.++. +|+|++++||+|||++|++++.+.+.... .+.++++||||||++|+.||.+++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~-~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 5688999999999999988 99999999999999999999988876421 1225679999999999999999999975
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++++..++|+.... ..|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..+..
T Consensus 323 ~~~~v~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC---------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchh----hhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 89999999987543 23445557899999999999999998877 8999999999999999998899999887776
Q ss_pred hcCC--CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCe-EEEec-chHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 454 TTSK--EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSV-VCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 454 ~~~~--~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~-i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
.... ...+++|+|||||...+. .+.......+..|+..++.. +.+.. ....+..++..|......+... ....+
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~-~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC-SCCHH
T ss_pred HhhccCCCCCeEEEEcCCcccccc-ccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCC-CCcHH
Confidence 5321 345899999999975443 33445566788888889864 44443 4577788899998877766632 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcc------cccccchhhHHHHHHHHHH----------H
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGV------SERTESDGAANLIQKLRAI----------N 593 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~r~~~~~~~~l~~~~~~~----------~ 593 (1931)
...+..+...+...............+.....+.......+... ...........+...+... .
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333332222211000000000000001110000000000 0000000000000000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
......+.+.+...+..++....... .. .....+......
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~-~~~~~l~~~~~~---------------------------------- 596 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGP-----YT-ELEQHLTAKFQE---------------------------------- 596 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTT-----CC-HHHHHHHHHHHT----------------------------------
T ss_pred hhhccccHHHHHHHHHHHHHHHhccC-----cc-HHHHHHHHHHHH----------------------------------
Confidence 01111111122111111111110000 00 000000000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
...............++|+..|.++|.+. ....+.++||||+++.+++.|+++|...+.+.++++
T Consensus 597 --------------~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~ 662 (797)
T 4a2q_A 597 --------------KEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (797)
T ss_dssp --------------THHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCC
T ss_pred --------------HHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccc
Confidence 00000001111224589999999999874 335678999999999999999999998766667777
Q ss_pred EEEEccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-
Q 000174 753 ASLIGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD- 827 (1931)
Q Consensus 753 ~~l~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~- 827 (1931)
..++|.+. .++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||....
T Consensus 663 ~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~ 741 (797)
T 4a2q_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (797)
T ss_dssp EEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC--------CCC
T ss_pred eEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCce
Confidence 77777432 237999999999999999 999999999999999999999999999999999999999999 776433
Q ss_pred EEEEEecCCh
Q 000174 828 YILMIERGNL 837 (1931)
Q Consensus 828 ~ivlv~~~~~ 837 (1931)
+++|+..++.
T Consensus 742 ~i~l~~~~~~ 751 (797)
T 4a2q_A 742 CILVTSKTEV 751 (797)
T ss_dssp EEEEECCHHH
T ss_pred EEEEEeCCcH
Confidence 5555554443
No 5
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-41 Score=427.67 Aligned_cols=342 Identities=20% Similarity=0.239 Sum_probs=263.0
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh--cCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR--QNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~--~~~~~~vL~L 357 (1931)
.+|.+.+..+...+.+.+.++.+|||+|.++++.+++ +|+|++++||||||++|++|+.+.+..... ...+.++|||
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 3455555444456889999999999999999999998 999999999999999999998877654311 1235679999
Q ss_pred eCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 358 VPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
+||++|+.||+++++++. ++++..++|+.... ..+.....+++|+|+||++|.+++.++.+.+.++++|||||
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~----~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFR----HQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHH----HHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHH----HHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 999999999999999875 57888999987642 33444456899999999999999999888999999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
||++.+. +|...+..+..........+++++|||+.. .+..+.. .+...|.
T Consensus 212 ah~~~~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~------------~~~~~~~----------------~~l~~~~ 262 (434)
T 2db3_A 212 ADRMLDM-GFSEDMRRIMTHVTMRPEHQTLMFSATFPE------------EIQRMAG----------------EFLKNYV 262 (434)
T ss_dssp HHHHTST-TTHHHHHHHHHCTTSCSSCEEEEEESCCCH------------HHHHHHH----------------TTCSSCE
T ss_pred Hhhhhcc-CcHHHHHHHHHhcCCCCCceEEEEeccCCH------------HHHHHHH----------------HhccCCE
Confidence 9999984 788887777765433345899999999752 2222211 1111111
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
...+.....
T Consensus 263 ~i~~~~~~~----------------------------------------------------------------------- 271 (434)
T 2db3_A 263 FVAIGIVGG----------------------------------------------------------------------- 271 (434)
T ss_dssp EEEESSTTC-----------------------------------------------------------------------
T ss_pred EEEeccccc-----------------------------------------------------------------------
Confidence 110000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
....+.
T Consensus 272 -------------------------------------------------------------------------~~~~i~- 277 (434)
T 2db3_A 272 -------------------------------------------------------------------------ACSDVK- 277 (434)
T ss_dssp -------------------------------------------------------------------------CCTTEE-
T ss_pred -------------------------------------------------------------------------cccccc-
Confidence 000000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
+.+.......|...|+++|... ..++||||+++..|+.|++.|.. .++.+..
T Consensus 278 --------------------~~~~~~~~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~----~~~~~~~ 329 (434)
T 2db3_A 278 --------------------QTIYEVNKYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSE----KEFPTTS 329 (434)
T ss_dssp --------------------EEEEECCGGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHH----TTCCEEE
T ss_pred --------------------eEEEEeCcHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHh----CCCCEEE
Confidence 0000001234677788888764 23499999999999999999998 6889999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv 832 (1931)
+|| ++++.+|++++++|++|+.+|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+.+ ++++
T Consensus 330 lhg-----~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 330 IHG-----DRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp EST-----TSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred EeC-----CCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 999 999999999999999999999999999999999999999999999999999999999999999874 3444
Q ss_pred e
Q 000174 833 E 833 (1931)
Q Consensus 833 ~ 833 (1931)
.
T Consensus 405 ~ 405 (434)
T 2db3_A 405 D 405 (434)
T ss_dssp C
T ss_pred e
Confidence 4
No 6
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.3e-40 Score=436.82 Aligned_cols=474 Identities=26% Similarity=0.395 Sum_probs=284.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CC
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GY 377 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l 377 (1931)
.+|||||.++++.++. +++|++++||+|||++|++++.+.+.... .+.+.++|||+||++|+.||.+++++++ ++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP-CGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc-cCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 6899999999999988 99999999999999999999988776421 1225679999999999999999999975 89
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
++..++|+.... ..|.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..++....
T Consensus 82 ~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 82 NIASISGATSDS----VSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp CEEEECTTTGGG----SCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCcch----hhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 999999987543 23444456799999999999999998877 7999999999999999998889998877776532
Q ss_pred C---CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC-eEEEec-chHHHhhhCCCCceeEEEeccchhhhHHHH
Q 000174 457 K---EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-VVCTIK-DRKELEKHVPMPSEVVVEYDKAASLWSLHE 531 (1931)
Q Consensus 457 ~---~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~-~i~t~~-~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~ 531 (1931)
. ...+++++|||||...+. .........+..++..++. .+.+.. ....+..++..|......+... ....+..
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 235 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDA-KTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKC 235 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHH
T ss_pred ccccCCCCeEEEEecCcccCcc-ccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCc-ccChHHH
Confidence 1 245899999999986443 3344556678888899995 455543 5678888899998877766632 1123333
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhhhhcccccchhhHHHHhhhc------ccccccchhhHHHHHHHHHH----------HH
Q 000174 532 QLKQMEVAVEEAAQSSSRR-SKWQFMGARDAGAKEELRQVYG------VSERTESDGAANLIQKLRAI----------NY 594 (1931)
Q Consensus 532 ~i~~l~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~------~~~r~~~~~~~~l~~~~~~~----------~~ 594 (1931)
.+..+...+.......... ...........+.......+.. ............+...+... ..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 315 (555)
T 3tbk_A 236 IISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALI 315 (555)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333222210000 0000000011111000000000 00000000000011111100 00
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
.....+.+.+...+..+......... ......+...+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------------------------------- 356 (555)
T 3tbk_A 316 ISEDAQMTDALNYLKAFFHDVREAAF------DETERELTRRFEEKL--------------------------------- 356 (555)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHTTH---------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhccc------chHHHHHHHHHhhhh---------------------------------
Confidence 11111111111111111111100000 000000000000000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
.............++|+..|.++|... ....+.++||||+++.+++.|++.|...+...++++.
T Consensus 357 ---------------~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~ 421 (555)
T 3tbk_A 357 ---------------EELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPG 421 (555)
T ss_dssp ---------------HHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEE
T ss_pred ---------------hhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeee
Confidence 000000001113478999999999875 3345789999999999999999999986433456777
Q ss_pred EEEccCCC---ccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCC-CCcE
Q 000174 754 SLIGHNNS---QEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKP-GSDY 828 (1931)
Q Consensus 754 ~l~G~~~~---~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~-Gs~~ 828 (1931)
.+||.+.. ++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||. +..+
T Consensus 422 ~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~ 500 (555)
T 3tbk_A 422 ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKC 500 (555)
T ss_dssp ECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEE
T ss_pred EEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceE
Confidence 77764322 38999999999999999 999999999999999999999999999999999999999999 665 3346
Q ss_pred EEEEecCCh
Q 000174 829 ILMIERGNL 837 (1931)
Q Consensus 829 ivlv~~~~~ 837 (1931)
++|+..++.
T Consensus 501 ~~l~~~~~~ 509 (555)
T 3tbk_A 501 FLLTSSADV 509 (555)
T ss_dssp EEEESCHHH
T ss_pred EEEEcCCCH
Confidence 666654443
No 7
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=450.54 Aligned_cols=476 Identities=28% Similarity=0.374 Sum_probs=299.7
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHH-HHHHHHHcC--
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQ-AEVIREQTG-- 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~-~~~l~~~~~-- 376 (1931)
..+||+||.++++.+++ +++|++++||+|||++|++++.+++......+.+.++|||+|+++|+.|| .++++++++
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 46899999999999999 89999999999999999999998887654334446799999999999999 999999886
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH------hcccccccceeEEEEeCCCcccCCCcHHHHHHH
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL------RHSIIKMEAINLLILDECHHAVKKHPYSLVMSE 450 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L------~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~ 450 (1931)
+++..++|+..... .|.......+|+|+||++|.+.+ ..+.+.+..+++|||||||++...+.|..++..
T Consensus 85 ~~v~~~~g~~~~~~----~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~ 160 (699)
T 4gl2_A 85 YRVIGLSGDTQLKI----SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 160 (699)
T ss_dssp SCEEEEC----CCC----CHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHH
T ss_pred ceEEEEeCCcchhh----HHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHH
Confidence 89999999876532 33344478999999999999988 455678899999999999999887788888876
Q ss_pred HHhhcC-----------CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC-eEEEec-chHHHhhhCCCCceeE
Q 000174 451 FYHTTS-----------KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS-VVCTIK-DRKELEKHVPMPSEVV 517 (1931)
Q Consensus 451 ~~~~~~-----------~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~-~i~t~~-~~~~l~~~~~~p~e~~ 517 (1931)
++.... ....|++|+|||||...+. .+.......+..+...++. .+.+.. +...+..++..|....
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~-~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 161 YLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGA-TKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSC-CSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHhhhcccccccccccCCCCCEEEEeccccccccc-ccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 665321 1134899999999997543 3344556678888888887 665553 4577888899988776
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcc-------cccccchhhHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGV-------SERTESDGAANLIQKLR 590 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-------~~r~~~~~~~~l~~~~~ 590 (1931)
..+... ....+...+..+...+........ .++.+.......+..+ ..+........+ ..+.
T Consensus 240 ~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~ 308 (699)
T 4gl2_A 240 AIADAT-REDPFKEKLLEIMTRIQTYCQMSP---------MSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHL-RKYN 308 (699)
T ss_dssp EEEC------CHHHHHHHHHHHHHHHHTCCC---------CSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHH-HHHH
T ss_pred EEcccc-cCChHHHHHHHHHHHHHHHhccCc---------chhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHH
Confidence 665432 122333344444333333221100 0111110000000000 000000001111 1122
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhh------hHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 000174 591 AINYALGELGQWCAYKVAQSFLTALQNDERANYQL------DVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGF 664 (1931)
Q Consensus 591 ~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~------~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 664 (1931)
........++.+.+...+..++............. ...-...++..........+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l------------------- 369 (699)
T 4gl2_A 309 EALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKML------------------- 369 (699)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHH-------------------
Confidence 22223344444555444443333322111000000 00000011111111000000
Q ss_pred ccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCC-CceEEEEEeehhHHHHHHHHHh
Q 000174 665 VEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTE-DFRAIIFVERVVAALVLPKVFA 742 (1931)
Q Consensus 665 ~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~-~~k~IIFv~~r~ta~~L~~~L~ 742 (1931)
..........++|+..|+++|... ...+ +.++||||+++.+++.|++.|.
T Consensus 370 ----------------------------~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~ 421 (699)
T 4gl2_A 370 ----------------------------KRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWIT 421 (699)
T ss_dssp ----------------------------HHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHH
T ss_pred ----------------------------HHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHH
Confidence 000001112456777788877763 2233 7899999999999999999999
Q ss_pred cCCCC--CCceeEEEEccCCC---ccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHh
Q 000174 743 ELPSL--SFVKSASLIGHNNS---QEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS 817 (1931)
Q Consensus 743 ~~~~l--~~~~~~~l~G~~~~---~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr 817 (1931)
..+.+ .++++..+||.+.. .+|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|||+.+|+||
T Consensus 422 ~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr 501 (699)
T 4gl2_A 422 ENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQA 501 (699)
T ss_dssp SSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHH
T ss_pred hCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHH
Confidence 85443 26899999993111 12999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCcEEEEEecCChhH
Q 000174 818 RGRARKPGSDYILMIERGNLSH 839 (1931)
Q Consensus 818 ~GRa~R~Gs~~ivlv~~~~~~~ 839 (1931)
+|||||.|..++++...+....
T Consensus 502 ~GRArr~g~~~~l~~~~~~~~~ 523 (699)
T 4gl2_A 502 RGRARADESTYVLVAHSGSGVI 523 (699)
T ss_dssp HTTSCSSSCEEEEEEESSSCSH
T ss_pred cCCCCCCCceEEEEEeCCchHH
Confidence 9999999988888877666543
No 8
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-39 Score=448.92 Aligned_cols=476 Identities=24% Similarity=0.382 Sum_probs=269.3
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
.++.+||+||.++++.+++ +|+|++++||+|||++|++++.+.+.... .+.+.++|||+||++|+.||.+++++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP-AGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC-SSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc-ccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4578999999999999988 99999999999999999999987665321 1125679999999999999999999975
Q ss_pred -CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc-cccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 376 -GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII-KMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l-~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++++..++|+..... .+.....+++|+|+||++|.+.+.++.+ .+.++++|||||||++.+.++|..++..+..
T Consensus 323 ~~~~v~~~~G~~~~~~----~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNV----SVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC---------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cCceEEEEECCcchhh----HHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 799999999875432 2333345789999999999999998877 7899999999999999998899999887776
Q ss_pred hcC--CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCe-EEEe-cchHHHhhhCCCCceeEEEeccchhhhHH
Q 000174 454 TTS--KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSV-VCTI-KDRKELEKHVPMPSEVVVEYDKAASLWSL 529 (1931)
Q Consensus 454 ~~~--~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~-i~t~-~~~~~l~~~~~~p~e~~~~y~~~~~~~~l 529 (1931)
... ....+++|+|||||...+. .+.......+..|+..++.. +.+. .+...+..++..|......+... ....+
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~-~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~-~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNA-KNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTC-CSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC-SCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccc-hhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccc-cCcHH
Confidence 431 1345899999999975443 33445667888899999964 4444 34577888899998877766632 11223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhh---------cccccccch-hhHHH---H---HHHHHHH
Q 000174 530 HEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVY---------GVSERTESD-GAANL---I---QKLRAIN 593 (1931)
Q Consensus 530 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---------~~~~r~~~~-~~~~l---~---~~~~~~~ 593 (1931)
...+..+...+...............+..+..+.......+. .+....... ....+ . ..+....
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333322221110000000000000111100000000 000000000 00000 0 0001111
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
......+.+.+...+..++..+.... .... ...++..+...+.
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~--~~~~----e~~l~~~~~~~~~------------------------------- 599 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGP--YTEL----EQHLTAKFQEKEP------------------------------- 599 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTT--CCHH----HHHHHHHHHHHHH-------------------------------
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhcc--CCHH----HHHHHHHHHHHHH-------------------------------
Confidence 11111122222222211111110000 0000 0000000000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
............++|+..|.++|.+. ....+.++||||+++.+++.|+++|...+.+.++++
T Consensus 600 -----------------~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~ 662 (936)
T 4a2w_A 600 -----------------ELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP 662 (936)
T ss_dssp -----------------HHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC
T ss_pred -----------------HHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce
Confidence 00000111224589999999999875 345678999999999999999999998766667777
Q ss_pred EEEEccCC---CccccHHHHHHHHHHhhc-CCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc-
Q 000174 753 ASLIGHNN---SQEMRTFQMQETIAKFRD-GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD- 827 (1931)
Q Consensus 753 ~~l~G~~~---~~~~~~~~R~~~l~~Fr~-G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~- 827 (1931)
..++|.+. .++|++.+|.+++++|++ |+++|||||+++++|||+|+|++||+||+|||+.+|+||+|| ||....
T Consensus 663 ~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~ 741 (936)
T 4a2w_A 663 GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSK 741 (936)
T ss_dssp EEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC--------CCC
T ss_pred eEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCE
Confidence 77777432 237999999999999998 999999999999999999999999999999999999999999 776443
Q ss_pred EEEEEecCC
Q 000174 828 YILMIERGN 836 (1931)
Q Consensus 828 ~ivlv~~~~ 836 (1931)
+++++..++
T Consensus 742 vi~Li~~~t 750 (936)
T 4a2w_A 742 CILVTSKTE 750 (936)
T ss_dssp EEEEESCHH
T ss_pred EEEEEeCCC
Confidence 555555443
No 9
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.1e-38 Score=407.69 Aligned_cols=451 Identities=22% Similarity=0.301 Sum_probs=278.9
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC---c
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY---V 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l---~ 378 (1931)
.+|+|||.+++++++++++|++++||+|||+++++++...+.. .+.++|||||+++|+.||.++++++++. +
T Consensus 8 ~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLTK-----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCccHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 5799999999999999999999999999999999998877651 3467999999999999999999999877 8
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~ 458 (1931)
+..++|+.... .+...+..++|+|+||+.|.+.+.++.+.+.++++|||||||++.+.+.|..++..+....
T Consensus 83 v~~~~g~~~~~-----~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~--- 154 (494)
T 1wp9_A 83 IVALTGEKSPE-----ERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA--- 154 (494)
T ss_dssp EEEECSCSCHH-----HHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC---
T ss_pred eEEeeCCcchh-----hhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC---
Confidence 99999987543 2333345789999999999999988888899999999999999998778888887666532
Q ss_pred CCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEe--cchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHH
Q 000174 459 KRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTI--KDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQM 536 (1931)
Q Consensus 459 ~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~--~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l 536 (1931)
..+++++|||||.+. ...+..+...++...... .....+..+..........+........+...+...
T Consensus 155 ~~~~~l~lTaTp~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (494)
T 1wp9_A 155 KNPLVIGLTASPGST---------PEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREM 225 (494)
T ss_dssp SSCCEEEEESCSCSS---------HHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCC---------cHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHH
Confidence 348899999999841 124555666555433332 223334455554444444444333333333333222
Q ss_pred HHHHHHHHhhhhhhhhh-hhcccccc-hhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH---HHHhHHHHHHHHHHH
Q 000174 537 EVAVEEAAQSSSRRSKW-QFMGARDA-GAKEELRQVYGVSERTESDGAANLIQKLRAINYAL---GELGQWCAYKVAQSF 611 (1931)
Q Consensus 537 ~~~~~~~~~~~~~~~~~-~~~~~r~~-~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l---~~lg~~~a~~~~~~~ 611 (1931)
................. ......+. ...................... .......+..+. ...+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------- 296 (494)
T 1wp9_A 226 LRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLL-YHAMALKLHHAIELLETQGLSA-------- 296 (494)
T ss_dssp HHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHH-HHHHHHHHHHHHHHHHHTCHHH--------
T ss_pred HHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHH-HHHHHHHHHHHHHHHHhhcHHH--------
Confidence 21111100000000000 00000000 0000000000000000000000 000000000000 0000000
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhh
Q 000174 612 LTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDV 691 (1931)
Q Consensus 612 l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~ 691 (1931)
...|+..+...... +.... ...+. .+ ..+..
T Consensus 297 ------------------~~~~~~~l~~~~~~----~~~~~----------------~~~~~----~~-------~~~~~ 327 (494)
T 1wp9_A 297 ------------------LRAYIKKLYEEAKA----GSTKA----------------SKEIF----SD-------KRMKK 327 (494)
T ss_dssp ------------------HHHHHHHHHHHHHT----TCCHH----------------HHHHH----TS-------HHHHH
T ss_pred ------------------HHHHHHHHHHhhcc----ccchh----------------hhhhh----hh-------HHHHH
Confidence 11122211111000 00000 00000 00 00000
Q ss_pred hhh---hcccCCCCCHHHHHHHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCC---ccc
Q 000174 692 IIG---AAVADGKVTPKVQSLIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNS---QEM 764 (1931)
Q Consensus 692 ~i~---~~~~~~~~s~Kv~~Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~---~~~ 764 (1931)
.+. ........++|+..|.++|.... ...+.++||||+++.+++.|++.|.. .++++..+||++.. .+|
T Consensus 328 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~~~~~ 403 (494)
T 1wp9_A 328 AISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK----DGIKAKRFVGQASKENDRGL 403 (494)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----TTCCEEEECCSSCC------
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH----cCCCcEEEeccccccccccC
Confidence 000 00111245789999999998752 24678999999999999999999998 57899999995322 267
Q ss_pred cHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE-EEEEecCC
Q 000174 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY-ILMIERGN 836 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~-ivlv~~~~ 836 (1931)
+..+|++++++|++|+++|||||+++++|||+|+|++||+||+|||+..|+||+|||+|.|+.. +.++..+.
T Consensus 404 ~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t 476 (494)
T 1wp9_A 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGT 476 (494)
T ss_dssp -CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTS
T ss_pred CHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCC
Confidence 8889999999999999999999999999999999999999999999999999999999999873 34445544
No 10
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.9e-38 Score=397.57 Aligned_cols=337 Identities=18% Similarity=0.214 Sum_probs=255.2
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.|++....+...+.+...++..|+|||.++++.+++ +++|+++|||+|||++|++++...+.. ...+.++|||+||
T Consensus 9 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~P~ 85 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHT 85 (391)
T ss_dssp CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCC---CTTCCCEEEECSC
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcc---cCCCeeEEEECCC
Confidence 344554444455888889999999999999999998 899999999999999999998766532 2335679999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||+++++++. ++++..++|+.....+... + ....++|+|+||++|.+.+.+..+.+.++++||+||||
T Consensus 86 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 86 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV-L--KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH-H--HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH-H--hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999875 7889999998754322111 1 11357999999999999998888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++...+.+...+..+....+ ..+++++|||||... .. ..+...+ ..|...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~~--------~~---~~~~~~~-----------------~~~~~~ 212 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTP--HEKQVMMFSATLSKE--------IR---PVCRKFM-----------------QDPMEI 212 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSC--SSSEEEEEESSCCST--------HH---HHHHHHC-----------------SSCEEE
T ss_pred HHhhccchHHHHHHHHhhCC--CCceEEEEEeeCCHH--------HH---HHHHHHc-----------------CCCeEE
Confidence 99886678777777776543 248899999998641 00 0111111 111111
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
.........
T Consensus 213 ~~~~~~~~~----------------------------------------------------------------------- 221 (391)
T 1xti_A 213 FVDDETKLT----------------------------------------------------------------------- 221 (391)
T ss_dssp ECCCCCCCC-----------------------------------------------------------------------
T ss_pred EecCccccC-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+..
T Consensus 222 ------------------------------------------------------------------------~~~~~~-- 227 (391)
T 1xti_A 222 ------------------------------------------------------------------------LHGLQQ-- 227 (391)
T ss_dssp ------------------------------------------------------------------------CTTCEE--
T ss_pred ------------------------------------------------------------------------cccceE--
Confidence 000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|.+++... ...++||||+++.++..+++.|.. .++.+..+|
T Consensus 228 -------------------~~~~~~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~ 281 (391)
T 1xti_A 228 -------------------YYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIH 281 (391)
T ss_dssp -------------------EEEECCGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHH----TTCCEEEEC
T ss_pred -------------------EEEEcCchhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHh----CCCcEEEEe
Confidence 000001124566666767654 467999999999999999999998 578999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEEE
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
| +++..+|.+++++|++|+.+|||||+++++|+|+|+|++||+||+|+++..|+||+||+||.|+.+.+
T Consensus 282 ~-----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~ 350 (391)
T 1xti_A 282 R-----GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA 350 (391)
T ss_dssp T-----TSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEE
T ss_pred C-----CCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999999877433
No 11
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=4e-40 Score=387.59 Aligned_cols=237 Identities=40% Similarity=0.556 Sum_probs=193.7
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSS-GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~-~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
.+..||++|||+|+|+.||.+||||+||... ...|||||||||||||+++|++|||.+||++++|.||.+|+++|||.+
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHH
Confidence 4789999999999999999999999999754 346999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCC---------CCCCCCCCCCCCCchHHHHHHHHHhHhhcccc
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKP---------GFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1740 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg 1740 (1931)
||.+|+++||++||++.++.+...|.+|+......-... .......++...||+++|+|||+|||||+|+|
T Consensus 94 La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G 173 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSG 173 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecC
Confidence 999999999999999999988888888887422111000 00001123467899999999999999999999
Q ss_pred CCceeEEeeeccCCCCCCCCC--CCCCCChHHHHHHHHhhcC-CceeEEeccCCeEEEEEEECCEEEEEeecCCHHHHHH
Q 000174 1741 RDTSVVWQVFQPLLDPMVTPE--TLPMHPVRELQERCQQQAE-GLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQK 1817 (1931)
Q Consensus 1741 ~~~~~v~~~~~~~l~~~i~~~--~~~~~P~~~L~e~~~~~~~-~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~skk~Ak~ 1817 (1931)
++++.+|+|+.++|.|.++.. ..+++|+++|++++++... .+.|+ ...+.|+|+|+|+|+.+++|.|.|||+|++
T Consensus 174 ~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~~~~~~~~~--~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq 251 (265)
T 3c4b_A 174 MSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAER--TYDGKVRVTVEVVGKGKFKGVGRSYRIAKS 251 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTTEEECCCEE--CTTSCEEEEEEETTTEEEEEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccCCceeeeccc--cCCCcEEEEEEEecceEEEEeeCCHHHHHH
Confidence 998899999999988876531 2356677777666654221 12222 224689999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 000174 1818 LAARNALAVLKE 1829 (1931)
Q Consensus 1818 ~AA~~AL~~L~~ 1829 (1931)
.||+.||+.|+.
T Consensus 252 ~AA~~AL~~l~~ 263 (265)
T 3c4b_A 252 AAARRALRSLKA 263 (265)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999999964
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=401.08 Aligned_cols=345 Identities=21% Similarity=0.227 Sum_probs=257.4
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-------------
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR------------- 347 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~------------- 347 (1931)
+|.+.+..+...+.+...++..|+|+|.++++.++. +|+|+++|||+|||++|++|+.+.+.....
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 455554444455888889999999999999999998 899999999999999999998876643210
Q ss_pred --cCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccc
Q 000174 348 --QNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSII 422 (1931)
Q Consensus 348 --~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l 422 (1931)
.....++|||+||++|+.||+++++++. ++++..++|+.... ..+.....+++|+|+||++|.+.+..+.+
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIG----QQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHH----HHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHH----HHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 0112569999999999999999999864 67899999986542 33344456899999999999999998888
Q ss_pred cccceeEEEEeCCCcccCCCcHHHHHHHHHhhc--CCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHH-HHhcCCeEEE
Q 000174 423 KMEAINLLILDECHHAVKKHPYSLVMSEFYHTT--SKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNL-ESKLDSVVCT 499 (1931)
Q Consensus 423 ~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~--~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~L-e~~l~~~i~t 499 (1931)
.+.++++|||||||++... .|...+..+.... +....+++++||||+.. .+..+ ...+..
T Consensus 172 ~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~------------~~~~~~~~~~~~---- 234 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDM-GFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK------------EIQMLARDFLDE---- 234 (417)
T ss_dssp CCTTCCEEEESSHHHHHHT-TCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH------------HHHHHHHHHCSS----
T ss_pred ChhhCcEEEEEChhHhhcc-CcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH------------HHHHHHHHHcCC----
Confidence 8999999999999999875 5777777777642 22235789999999852 11111 111111
Q ss_pred ecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccc
Q 000174 500 IKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTES 579 (1931)
Q Consensus 500 ~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~ 579 (1931)
|....+ ..... .
T Consensus 235 -------------~~~~~~--~~~~~-----------------------------------------------~------ 246 (417)
T 2i4i_A 235 -------------YIFLAV--GRVGS-----------------------------------------------T------ 246 (417)
T ss_dssp -------------CEEEEE--C---------------------------------------------------C------
T ss_pred -------------CEEEEe--CCCCC-----------------------------------------------C------
Confidence 110000 00000 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccc
Q 000174 580 DGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVD 659 (1931)
Q Consensus 580 ~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~ 659 (1931)
T Consensus 247 -------------------------------------------------------------------------------- 246 (417)
T 2i4i_A 247 -------------------------------------------------------------------------------- 246 (417)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHH
Q 000174 660 SENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPK 739 (1931)
Q Consensus 660 ~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 739 (1931)
...+.. .+.......|...|.+++... ..+.++||||+++..++.+++
T Consensus 247 ---------~~~i~~---------------------~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~ 294 (417)
T 2i4i_A 247 ---------SENITQ---------------------KVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLED 294 (417)
T ss_dssp ---------CSSEEE---------------------EEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHH
T ss_pred ---------ccCceE---------------------EEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHH
Confidence 000000 000001123556666766653 356799999999999999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhc
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRG 819 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~G 819 (1931)
.|.. .++.+..+|| ++++.+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+|
T Consensus 295 ~L~~----~~~~~~~~h~-----~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~G 365 (417)
T 2i4i_A 295 FLYH----EGYACTSIHG-----DRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 365 (417)
T ss_dssp HHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHT
T ss_pred HHHH----CCCCeeEecC-----CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcC
Confidence 9998 5789999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc--EEEEEecCC
Q 000174 820 RARKPGSD--YILMIERGN 836 (1931)
Q Consensus 820 Ra~R~Gs~--~ivlv~~~~ 836 (1931)
||||.|+. .++++...+
T Consensus 366 R~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 366 RTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp TBCC--CCEEEEEEECGGG
T ss_pred ccccCCCCceEEEEEcccc
Confidence 99999876 344444433
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4e-38 Score=399.01 Aligned_cols=334 Identities=20% Similarity=0.242 Sum_probs=255.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
++.+.+..+...+.+...++.+|+++|.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~Pt 114 (410)
T 2j0s_A 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI---QVRETQALILAPT 114 (410)
T ss_dssp SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT---TSCSCCEEEECSS
T ss_pred CHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh---ccCCceEEEEcCc
Confidence 455555444556888889999999999999999998 899999999999999999998876532 2345689999999
Q ss_pred hhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++|+.||+++++.+. ++.+..++|+..... .+.....+++|+|+||++|.+.+.++.+.+.++++||+||||+
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGE----DIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHH----HHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH----HHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 999999999999864 678888888865432 2223335789999999999999999888899999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.+. .|...+..++...+ ...++++|||||.. .+..+ +..+...|....
T Consensus 191 ~~~~-~~~~~~~~i~~~~~--~~~~~i~~SAT~~~------------~~~~~----------------~~~~~~~~~~~~ 239 (410)
T 2j0s_A 191 MLNK-GFKEQIYDVYRYLP--PATQVVLISATLPH------------EILEM----------------TNKFMTDPIRIL 239 (410)
T ss_dssp HTST-TTHHHHHHHHTTSC--TTCEEEEEESCCCH------------HHHTT----------------GGGTCSSCEEEC
T ss_pred HHhh-hhHHHHHHHHHhCc--cCceEEEEEcCCCH------------HHHHH----------------HHHHcCCCEEEE
Confidence 9875 56666666666543 24789999999863 11110 011111221110
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
+ .....
T Consensus 240 ~--~~~~~------------------------------------------------------------------------ 245 (410)
T 2j0s_A 240 V--KRDEL------------------------------------------------------------------------ 245 (410)
T ss_dssp C--CGGGC------------------------------------------------------------------------
T ss_pred e--cCccc------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
....+....
T Consensus 246 ----------------------------------------------------------------------~~~~~~~~~- 254 (410)
T 2j0s_A 246 ----------------------------------------------------------------------TLEGIKQFF- 254 (410)
T ss_dssp ----------------------------------------------------------------------SCTTEEEEE-
T ss_pred ----------------------------------------------------------------------cCCCceEEE-
Confidence 000000000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
........|...|.+++... ...++||||+++..++.+++.|.. .++.+..+||
T Consensus 255 -------------------~~~~~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~ 308 (410)
T 2j0s_A 255 -------------------VAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHG 308 (410)
T ss_dssp -------------------EEESSTTHHHHHHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECT
T ss_pred -------------------EEeCcHHhHHHHHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeC
Confidence 00001234666777777664 345999999999999999999998 5789999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
++++.+|++++++|++|+.+|||||+++++|||+|++++||+||+|+++..|+||+|||||.|+.+.
T Consensus 309 -----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~ 375 (410)
T 2j0s_A 309 -----DMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 375 (410)
T ss_dssp -----TSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred -----CCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999987743
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.8e-38 Score=412.87 Aligned_cols=343 Identities=15% Similarity=0.220 Sum_probs=244.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHh--c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAK--K-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l--~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
..+.+.+.++..|||+|.++++.++ . +|+|++++||+|||++|++|+.+.+..... .....++|||+||++|+.||
T Consensus 83 l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~ 162 (563)
T 3i5x_A 83 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 162 (563)
T ss_dssp HHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHH
Confidence 3478888999999999999999998 4 799999999999999999999887765321 12245799999999999999
Q ss_pred HHHHHHHc-------CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcc
Q 000174 368 AEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHA 438 (1931)
Q Consensus 368 ~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~ 438 (1931)
+++++.++ ...+..++|+... ...|... ..+++|+|+||++|.+++.+. ...+..+++|||||||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 163 EAEVKKIHDMNYGLKKYACVSLVGGTDF----RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCH----HHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHhhccccCceeEEEEECCcCH----HHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999853 3557777777543 2333333 347899999999999998774 346788999999999999
Q ss_pred cCCCcHHHHHHHHHhhcCC-----CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 439 VKKHPYSLVMSEFYHTTSK-----EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 439 ~~~~~~~~im~~~~~~~~~-----~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
... .|...+..+....+. ...+++++||||+.. .+..+.. .+...|
T Consensus 239 ~~~-~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~------------~v~~~~~----------------~~~~~~ 289 (563)
T 3i5x_A 239 LEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDD------------KVQKLAN----------------NIMNKK 289 (563)
T ss_dssp TST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT------------HHHHHTT----------------TTCCSS
T ss_pred hcc-chHHHHHHHHHhhhhccccCccCceEEEEEccCCH------------HHHHHHH----------------HhcCCC
Confidence 874 577666665544321 224789999999864 2222211 111122
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+......... .
T Consensus 290 ~~~~~~~~~~~~~~---------------------------------------------~-------------------- 304 (563)
T 3i5x_A 290 ECLFLDTVDKNEPE---------------------------------------------A-------------------- 304 (563)
T ss_dssp EEEEEESSCSSSCS---------------------------------------------S--------------------
T ss_pred ceEEEeccCCCCcc---------------------------------------------c--------------------
Confidence 21111100000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
...+.
T Consensus 305 ---------------------------------------------------------------------------~~~~~ 309 (563)
T 3i5x_A 305 ---------------------------------------------------------------------------HERID 309 (563)
T ss_dssp ---------------------------------------------------------------------------CTTEE
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 00000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHH----HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCC
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKV----QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF 749 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv----~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~ 749 (1931)
.... .......+. ..+.+.+.. ...+.++||||+++..++.+++.|..... .+
T Consensus 310 ~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~ 366 (563)
T 3i5x_A 310 QSVV--------------------ISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFK-KD 366 (563)
T ss_dssp EEEE--------------------EESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSCHHHHHHHHHHHHHHHT-TT
T ss_pred eEEE--------------------ECchhHhhHHHHHHHHHHHHhh--cCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CC
Confidence 0000 000001111 122222222 24567999999999999999999986311 37
Q ss_pred ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--
Q 000174 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-- 827 (1931)
Q Consensus 750 ~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-- 827 (1931)
+.+..+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|..
T Consensus 367 ~~v~~~h~-----~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 441 (563)
T 3i5x_A 367 LPILEFHG-----KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 441 (563)
T ss_dssp SCEEEEST-----TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE
T ss_pred ceEEEecC-----CCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce
Confidence 88999999 99999999999999999999999999999999999999999999999999999999999999976
Q ss_pred EEEEEecC
Q 000174 828 YILMIERG 835 (1931)
Q Consensus 828 ~ivlv~~~ 835 (1931)
+++++...
T Consensus 442 ~i~~~~~~ 449 (563)
T 3i5x_A 442 SVLFICKD 449 (563)
T ss_dssp EEEEEEGG
T ss_pred EEEEEchh
Confidence 45555543
No 15
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.8e-40 Score=382.62 Aligned_cols=212 Identities=33% Similarity=0.448 Sum_probs=128.5
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENF 1670 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~L 1670 (1931)
++..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+.+|||++|
T Consensus 27 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~L 104 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTT--BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHH
Confidence 4899999999999999999999999999754 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeee
Q 000174 1671 ARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVF 1750 (1931)
Q Consensus 1671 a~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~ 1750 (1931)
|.+|.++||++||+.++++.. .++...+|+++|+|||+|||||+|+|++ .+++|+
T Consensus 105 a~~a~~lgL~~~l~~~~~e~~-----------------------~~g~~~~~~lad~fEAliGAiyld~G~~--~~~~~i 159 (248)
T 3n3w_A 105 AKIANSLNLGDFILMSVAEEN-----------------------NGGKEKPSILSDALEAIIGAIHLEAGFE--FAKTIA 159 (248)
T ss_dssp HHHHHHTTGGGTCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCHH--HHHHHH
T ss_pred HHHHHHcCcHHHhhcCchhhh-----------------------cCCCCCccHHHHHHHHHHHHHHHHCChH--HHHHHH
Confidence 999999999999998776532 1234678999999999999999999865 677888
Q ss_pred ccCCCCCCCCC---CCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHH
Q 000174 1751 QPLLDPMVTPE---TLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAAR 1821 (1931)
Q Consensus 1751 ~~~l~~~i~~~---~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~ 1821 (1931)
..++.+.+... ...+|||+.|||+||+++.. +.|++.. .| +.|+|.|+|+|+.+++|.|.|||+||+.||+
T Consensus 160 ~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~ 239 (248)
T 3n3w_A 160 LRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAK 239 (248)
T ss_dssp HHHHHHHCC-----------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHH
Confidence 88888776542 34689999999999998876 4998753 44 4799999999999999999999999999999
Q ss_pred HHHHHHHh
Q 000174 1822 NALAVLKE 1829 (1931)
Q Consensus 1822 ~AL~~L~~ 1829 (1931)
.||+.|+.
T Consensus 240 ~AL~~L~~ 247 (248)
T 3n3w_A 240 IALEKLGA 247 (248)
T ss_dssp --------
T ss_pred HHHHHHHc
Confidence 99999864
No 16
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=3.7e-39 Score=368.09 Aligned_cols=206 Identities=29% Similarity=0.417 Sum_probs=185.4
Q ss_pred hHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHH
Q 000174 1591 DFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENF 1670 (1931)
Q Consensus 1591 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~L 1670 (1931)
.+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+++|||.+|
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~--~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~l 80 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK--EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF 80 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS--SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHH
Confidence 3678999999999999999999999999654 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEeee
Q 000174 1671 ARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQVF 1750 (1931)
Q Consensus 1671 a~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~~ 1750 (1931)
|.+|.++||++||+.+.++. .+++++|+|||+|||||+|+|++.+.+++|+
T Consensus 81 a~~a~~l~l~~~l~~~~~~~-----------------------------~~~~lad~~EAliGAiyld~g~~~~~~~~~i 131 (221)
T 2nug_A 81 NLLAQKLELHKFIRIKRGKI-----------------------------NETIIGDVFEALWAAVYIDSGRDANFTRELF 131 (221)
T ss_dssp HHHHHTTTGGGTCBSCTTCC-----------------------------CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcChHHhhccCCCcc-----------------------------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999876642 1899999999999999999998875578888
Q ss_pred ccCCCCCCC-C---CCCCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHH
Q 000174 1751 QPLLDPMVT-P---ETLPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAA 1820 (1931)
Q Consensus 1751 ~~~l~~~i~-~---~~~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA 1820 (1931)
.+++.+.+. . ....+||++.|||+||+++.. ++|++.. .| +.|+|.|+|+|+ +++|.|.|||+||+.||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA 210 (221)
T 2nug_A 132 YKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAA 210 (221)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHH
Confidence 888877665 2 233689999999999999876 5998753 34 479999999999 99999999999999999
Q ss_pred HHHHHHHH
Q 000174 1821 RNALAVLK 1828 (1931)
Q Consensus 1821 ~~AL~~L~ 1828 (1931)
+.||+.|.
T Consensus 211 ~~AL~~L~ 218 (221)
T 2nug_A 211 EELIKLLE 218 (221)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99999986
No 17
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.4e-37 Score=389.44 Aligned_cols=334 Identities=20% Similarity=0.242 Sum_probs=250.9
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
+|.+.+..+...+.+.+.++..|+|+|.++++.++. +++|+++|||+|||++|++++...+.. .+.+.++|||+
T Consensus 6 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~ 82 (395)
T 3pey_A 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNP---EDASPQAICLA 82 (395)
T ss_dssp SSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhcc---CCCCccEEEEC
Confidence 445555555566889999999999999999999987 789999999999999999998766542 23456899999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.||+++++++. ++.+..++|+..... ....++|+|+||++|.+.+.++.+.+.++++||+|||
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 154 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEA 154 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEECh
Confidence 99999999999999864 567777776643211 1247899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
|++.....+...+..+....+. .+++++|||||.. .+..+... ....+..
T Consensus 155 h~~~~~~~~~~~~~~~~~~~~~--~~~~i~~SAT~~~------------~~~~~~~~----------------~~~~~~~ 204 (395)
T 3pey_A 155 DNMLDQQGLGDQCIRVKRFLPK--DTQLVLFSATFAD------------AVRQYAKK----------------IVPNANT 204 (395)
T ss_dssp HHHHHSTTHHHHHHHHHHTSCT--TCEEEEEESCCCH------------HHHHHHHH----------------HSCSCEE
T ss_pred hhhcCccccHHHHHHHHHhCCC--CcEEEEEEecCCH------------HHHHHHHH----------------hCCCCeE
Confidence 9999866888887777665433 4899999999863 11111111 1111100
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
... .....
T Consensus 205 ~~~--~~~~~---------------------------------------------------------------------- 212 (395)
T 3pey_A 205 LEL--QTNEV---------------------------------------------------------------------- 212 (395)
T ss_dssp ECC--CGGGC----------------------------------------------------------------------
T ss_pred EEc--ccccc----------------------------------------------------------------------
Confidence 000 00000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
....+...
T Consensus 213 ------------------------------------------------------------------------~~~~~~~~ 220 (395)
T 3pey_A 213 ------------------------------------------------------------------------NVDAIKQL 220 (395)
T ss_dssp ------------------------------------------------------------------------SCTTEEEE
T ss_pred ------------------------------------------------------------------------ccccccEE
Confidence 00000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.........|...+.+++.. ....++||||+++.++..+++.|+. .++.+..+
T Consensus 221 --------------------~~~~~~~~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~ 273 (395)
T 3pey_A 221 --------------------YMDCKNEADKFDVLTELYGL---MTIGSSIIFVATKKTANVLYGKLKS----EGHEVSIL 273 (395)
T ss_dssp --------------------EEECSSHHHHHHHHHHHHTT---TTSSEEEEECSCHHHHHHHHHHHHH----TTCCCEEE
T ss_pred --------------------EEEcCchHHHHHHHHHHHHh---ccCCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEe
Confidence 00000112244444444432 2457999999999999999999998 57899999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCCCcEE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~Gs~~i 829 (1931)
|| +++..+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|+ ++.+|+||+|||||.|+.+.
T Consensus 274 ~~-----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~ 348 (395)
T 3pey_A 274 HG-----DLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348 (395)
T ss_dssp CT-----TSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE
T ss_pred CC-----CCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce
Confidence 99 99999999999999999999999999999999999999999999999 99999999999999998744
Q ss_pred EEE
Q 000174 830 LMI 832 (1931)
Q Consensus 830 vlv 832 (1931)
.++
T Consensus 349 ~~~ 351 (395)
T 3pey_A 349 AIS 351 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.6e-37 Score=392.22 Aligned_cols=331 Identities=21% Similarity=0.238 Sum_probs=255.1
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+...+.+.+.++..|+++|.++++.+++ +++|+++|||+|||++|++++...+.. ...+.++|||+|
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P 97 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKP---KLNKIQALIMVP 97 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhh---ccCCccEEEEcC
Confidence 4456665555566889999999999999999999998 899999999999999999998776542 224567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.||.++++.+. ++++..++|+... ...+......++|+|+||++|.+.+.+....+.++++|||||||
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNL----RDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCH----HHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcch----HHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 9999999999999875 6788888887653 22333444688999999999999998888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHH-HHHhcCCeEEEecchHHHhhhCCCCce
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICN-LESKLDSVVCTIKDRKELEKHVPMPSE 515 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~-Le~~l~~~i~t~~~~~~l~~~~~~p~e 515 (1931)
++... .|...+..+....+. ..++++||||+.. .+.. +...+ ..|..
T Consensus 174 ~~~~~-~~~~~~~~i~~~~~~--~~~~i~lSAT~~~------------~~~~~~~~~~-----------------~~~~~ 221 (400)
T 1s2m_A 174 KMLSR-DFKTIIEQILSFLPP--THQSLLFSATFPL------------TVKEFMVKHL-----------------HKPYE 221 (400)
T ss_dssp HHSSH-HHHHHHHHHHTTSCS--SCEEEEEESCCCH------------HHHHHHHHHC-----------------SSCEE
T ss_pred Hhhhh-chHHHHHHHHHhCCc--CceEEEEEecCCH------------HHHHHHHHHc-----------------CCCeE
Confidence 99874 788888877765432 4789999999752 1111 11111 11110
Q ss_pred eEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHH
Q 000174 516 VVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYA 595 (1931)
Q Consensus 516 ~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~ 595 (1931)
... .....
T Consensus 222 ~~~--~~~~~---------------------------------------------------------------------- 229 (400)
T 1s2m_A 222 INL--MEELT---------------------------------------------------------------------- 229 (400)
T ss_dssp ESC--CSSCB----------------------------------------------------------------------
T ss_pred EEe--ccccc----------------------------------------------------------------------
Confidence 000 00000
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccc
Q 000174 596 LGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEG 675 (1931)
Q Consensus 596 l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 675 (1931)
...+..
T Consensus 230 -------------------------------------------------------------------------~~~~~~- 235 (400)
T 1s2m_A 230 -------------------------------------------------------------------------LKGITQ- 235 (400)
T ss_dssp -------------------------------------------------------------------------CTTEEE-
T ss_pred -------------------------------------------------------------------------cCCcee-
Confidence 000000
Q ss_pred cccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEE
Q 000174 676 ELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASL 755 (1931)
Q Consensus 676 ~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l 755 (1931)
.........|...+.+++... ...++||||+++..+..+++.|.. .++.+..+
T Consensus 236 --------------------~~~~~~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~ 288 (400)
T 1s2m_A 236 --------------------YYAFVEERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITD----LGYSCYYS 288 (400)
T ss_dssp --------------------EEEECCGGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHH----HTCCEEEE
T ss_pred --------------------EEEEechhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHh----cCCCeEEe
Confidence 000001124555666666553 456999999999999999999988 57889999
Q ss_pred EccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 756 IGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 756 ~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|| +++..+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+|||||.|+.+
T Consensus 289 ~~-----~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g 356 (400)
T 1s2m_A 289 HA-----RMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG 356 (400)
T ss_dssp CT-----TSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE
T ss_pred cC-----CCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc
Confidence 99 999999999999999999999999999999999999999999999999999999999999999773
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.8e-37 Score=386.82 Aligned_cols=335 Identities=21% Similarity=0.220 Sum_probs=250.6
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L 357 (1931)
.++.+.+..+...+.+.+.++..|+++|.++++.++. +++|+++|||+|||++|++++.+.+.. ...+.++|||
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---~~~~~~~lil 101 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---ANKYPQCLCL 101 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCT---TSCSCCEEEE
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhh---cCCCCCEEEE
Confidence 3455555555566889999999999999999999987 789999999999999999998766542 2345579999
Q ss_pred eCChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEE
Q 000174 358 VPKVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLIL 432 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~ 432 (1931)
+||++|+.||++.++++. ++.+....|+...... .....+|+|+||++|.+.+.+ +.+.+.++++|||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 999999999999999864 5677777776543221 124679999999999999865 6778899999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPM 512 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~ 512 (1931)
||||++.....+...+..+....+ ..+++++|||||.. .+..+.. .....
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~ 224 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLP--RNCQMLLFSATFED------------SVWKFAQ----------------KVVPD 224 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSC--TTCEEEEEESCCCH------------HHHHHHH----------------HHSSS
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCC--CCceEEEEEeecCH------------HHHHHHH----------------HhcCC
Confidence 999999876677777776666543 34899999999863 1111111 11111
Q ss_pred CceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHH
Q 000174 513 PSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAI 592 (1931)
Q Consensus 513 p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~ 592 (1931)
|..... .....
T Consensus 225 ~~~~~~--~~~~~------------------------------------------------------------------- 235 (412)
T 3fht_A 225 PNVIKL--KREEE------------------------------------------------------------------- 235 (412)
T ss_dssp CEEECC--CGGGS-------------------------------------------------------------------
T ss_pred CeEEee--ccccc-------------------------------------------------------------------
Confidence 110000 00000
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccc
Q 000174 593 NYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEI 672 (1931)
Q Consensus 593 ~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 672 (1931)
....+
T Consensus 236 ---------------------------------------------------------------------------~~~~~ 240 (412)
T 3fht_A 236 ---------------------------------------------------------------------------TLDTI 240 (412)
T ss_dssp ---------------------------------------------------------------------------SCTTE
T ss_pred ---------------------------------------------------------------------------cccCc
Confidence 00000
Q ss_pred ccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCcee
Q 000174 673 EEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKS 752 (1931)
Q Consensus 673 ~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~ 752 (1931)
... .........|...|.+++... ...++||||+++..+..+++.|.. .++.+
T Consensus 241 ~~~--------------------~~~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~ 293 (412)
T 3fht_A 241 KQY--------------------YVLCSSRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSK----EGHQV 293 (412)
T ss_dssp EEE--------------------EEECSSHHHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHH----TTCCC
T ss_pred eEE--------------------EEEcCChHHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHh----CCCeE
Confidence 000 000001123556666666554 356999999999999999999998 57899
Q ss_pred EEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCCC
Q 000174 753 ASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 753 ~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~Gs 826 (1931)
..+|| +|++.+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|+ +..+|+||+|||||.|+
T Consensus 294 ~~~~~-----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 368 (412)
T 3fht_A 294 ALLSG-----EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 (412)
T ss_dssp EEECT-----TSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC
T ss_pred EEecC-----CCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCC
Confidence 99999 99999999999999999999999999999999999999999999995 67999999999999998
Q ss_pred cEEEE
Q 000174 827 DYILM 831 (1931)
Q Consensus 827 ~~ivl 831 (1931)
.+..+
T Consensus 369 ~g~~~ 373 (412)
T 3fht_A 369 RGLAV 373 (412)
T ss_dssp CEEEE
T ss_pred CceEE
Confidence 74433
No 20
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=392.31 Aligned_cols=339 Identities=18% Similarity=0.238 Sum_probs=242.0
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
++...+..+...+.+.+.++..|++||.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 41 ~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~ 117 (414)
T 3eiq_A 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL---DLKATQALVLAPT 117 (414)
T ss_dssp CGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCT---TSCSCCEEEECSS
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhh---cCCceeEEEEeCh
Confidence 344444444455788889999999999999999998 899999999999999999998876542 2345679999999
Q ss_pred hhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||+++++.+. +..+..+.|+... ...+... ...++|+|+||++|.+.+.++.+.+..+++|||||||
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNV----RAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTH----HHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcch----HHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 999999999999875 6777777777543 2223333 3678999999999999999988889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV 516 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~ 516 (1931)
++.+. .|...+..++...+ ..+++++|||||.. .+..+.. .+...|...
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~~~~ 242 (414)
T 3eiq_A 194 EMLSR-GFKDQIYDIFQKLN--SNTQVVLLSATMPS------------DVLEVTK----------------KFMRDPIRI 242 (414)
T ss_dssp HHHHT-TTHHHHHHHHTTSC--TTCEEEEECSCCCH------------HHHHHHT----------------TTCSSCEEE
T ss_pred Hhhcc-CcHHHHHHHHHhCC--CCCeEEEEEEecCH------------HHHHHHH----------------HHcCCCEEE
Confidence 99874 56666666665543 34899999999852 1111111 111111110
Q ss_pred EEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHH
Q 000174 517 VVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYAL 596 (1931)
Q Consensus 517 ~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l 596 (1931)
........
T Consensus 243 ~~~~~~~~------------------------------------------------------------------------ 250 (414)
T 3eiq_A 243 LVKKEELT------------------------------------------------------------------------ 250 (414)
T ss_dssp CCCCCCCC------------------------------------------------------------------------
T ss_pred EecCCccC------------------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccc
Q 000174 597 GELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGE 676 (1931)
Q Consensus 597 ~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~ 676 (1931)
...+...
T Consensus 251 ------------------------------------------------------------------------~~~~~~~- 257 (414)
T 3eiq_A 251 ------------------------------------------------------------------------LEGIRQF- 257 (414)
T ss_dssp ------------------------------------------------------------------------TTSCCEE-
T ss_pred ------------------------------------------------------------------------CCCceEE-
Confidence 0000000
Q ss_pred ccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEE
Q 000174 677 LLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLI 756 (1931)
Q Consensus 677 l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~ 756 (1931)
.........|...|.+++... ...++||||+++..++.+++.|.. .++.+..+|
T Consensus 258 -------------------~~~~~~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~h 311 (414)
T 3eiq_A 258 -------------------YINVEREEWKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHA----RDFTVSAMH 311 (414)
T ss_dssp -------------------EEECSSSTTHHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHT----TTCCCEEC-
T ss_pred -------------------EEEeChHHhHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHh----cCCeEEEec
Confidence 000011223666677776553 456899999999999999999998 578999999
Q ss_pred ccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 757 GHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 757 G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
| ++++.+|.+++++|++|+.+|||||+++++|||+|++++||+||+|+++.+|+||+|||||.|+. +++++..
T Consensus 312 ~-----~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 386 (414)
T 3eiq_A 312 G-----DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTE 386 (414)
T ss_dssp -------CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECS
T ss_pred C-----CCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcH
Confidence 9 99999999999999999999999999999999999999999999999999999999999999866 4444443
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-36 Score=378.29 Aligned_cols=332 Identities=18% Similarity=0.295 Sum_probs=252.3
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
.++.+.+..+...+.+.+.++.+|+|+|.++++.+++ +++++.+|||+|||++|++++...+. ...+.++|||+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~----~~~~~~~lil~ 81 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVN----ENNGIEAIILT 81 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSC----SSSSCCEEEEC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhc----ccCCCcEEEEc
Confidence 3455555545556888999999999999999999987 58999999999999999999877654 23456799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|+++|+.||+++++.++ ++.+..++|+.... ..+ ..+..++|+|+||+.|.+.+.++.+.+.++++||+|||
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~-~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIY----PQI-KALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHH----HHH-HHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchH----HHH-hhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 99999999999999976 56788888876432 122 22347899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHH-HHHHhcCCeEEEecchHHHhhhCCCCc
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC-NLESKLDSVVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~-~Le~~l~~~i~t~~~~~~l~~~~~~p~ 514 (1931)
|++.+. .|...+..+..... ..+++++|||||.. .+. .+...+......... ....
T Consensus 157 h~~~~~-~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~~~~~~~~~~~~~~-------~~~~- 213 (367)
T 1hv8_A 157 DEMLNM-GFIKDVEKILNACN--KDKRILLFSATMPR------------EILNLAKKYMGDYSFIKAK-------INAN- 213 (367)
T ss_dssp HHHHTT-TTHHHHHHHHHTSC--SSCEEEEECSSCCH------------HHHHHHHHHCCSEEEEECC-------SSSS-
T ss_pred hHhhhh-chHHHHHHHHHhCC--CCceEEEEeeccCH------------HHHHHHHHHcCCCeEEEec-------CCCC-
Confidence 999875 56666666655432 34789999999863 111 111111110000000 0000
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
T Consensus 214 -------------------------------------------------------------------------------- 213 (367)
T 1hv8_A 214 -------------------------------------------------------------------------------- 213 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
+..
T Consensus 214 -----------------------------------------------------------------------------~~~ 216 (367)
T 1hv8_A 214 -----------------------------------------------------------------------------IEQ 216 (367)
T ss_dssp -----------------------------------------------------------------------------SEE
T ss_pred -----------------------------------------------------------------------------ceE
Confidence 000
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.........|+..|.+++. ....++||||+++..+..+++.|.. .++.+..
T Consensus 217 ---------------------~~~~~~~~~~~~~l~~~l~----~~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~ 267 (367)
T 1hv8_A 217 ---------------------SYVEVNENERFEALCRLLK----NKEFYGLVFCKTKRDTKELASMLRD----IGFKAGA 267 (367)
T ss_dssp ---------------------EEEECCGGGHHHHHHHHHC----STTCCEEEECSSHHHHHHHHHHHHH----TTCCEEE
T ss_pred ---------------------EEEEeChHHHHHHHHHHHh----cCCCcEEEEECCHHHHHHHHHHHHh----cCCCeEE
Confidence 0000011235555655553 3567899999999999999999998 5789999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMI 832 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv 832 (1931)
+|| +++..+|++++++|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+|||+|.|+. .++++
T Consensus 268 ~~~-----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 268 IHG-----DLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp ECS-----SSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred eeC-----CCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE
Confidence 999 99999999999999999999999999999999999999999999999999999999999999865 44455
Q ss_pred ecC
Q 000174 833 ERG 835 (1931)
Q Consensus 833 ~~~ 835 (1931)
.+.
T Consensus 343 ~~~ 345 (367)
T 1hv8_A 343 NRR 345 (367)
T ss_dssp CTT
T ss_pred cHH
Confidence 443
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=5.1e-37 Score=405.17 Aligned_cols=342 Identities=16% Similarity=0.226 Sum_probs=244.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHh--c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAK--K-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQ 367 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l--~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~ 367 (1931)
..+.+..+++..|||+|.++++.++ . +++|+++|||+|||++|++|+.+.+..... .....++|||+||++|+.||
T Consensus 32 l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~ 111 (579)
T 3sqw_A 32 IHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 111 (579)
T ss_dssp HHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHH
Confidence 4478889999999999999999998 4 799999999999999999999887765321 12345799999999999999
Q ss_pred HHHHHHHc-------CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcc
Q 000174 368 AEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHA 438 (1931)
Q Consensus 368 ~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~ 438 (1931)
+++++.++ .+.+..+.|+... ...+... ...++|+|+||++|.+++.+. ...+..+++|||||||++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~gg~~~----~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 112 EAEVKKIHDMNYGLKKYACVSLVGGTDF----RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHCGGGTTSCEEEECTTSCH----HHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHhhcccccceEEEEEECCccH----HHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 99999864 3557777777542 2333333 247899999999999998774 456788999999999999
Q ss_pred cCCCcHHHHHHHHHhhcCC-----CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 439 VKKHPYSLVMSEFYHTTSK-----EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 439 ~~~~~~~~im~~~~~~~~~-----~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
... +|...+..+....+. ...+++++||||+.. .+..+.. .+...|
T Consensus 188 ~~~-gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~------------~v~~~~~----------------~~l~~~ 238 (579)
T 3sqw_A 188 LEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDD------------KVQKLAN----------------NIMNKK 238 (579)
T ss_dssp TST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT------------HHHHHTT----------------TTCCSS
T ss_pred hcC-CCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh------------HHHHHHH----------------HHcCCC
Confidence 874 577666666544321 124789999999864 1222211 112222
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+........ .
T Consensus 239 ~~~~~~~~~~~~~------------------------~------------------------------------------ 252 (579)
T 3sqw_A 239 ECLFLDTVDKNEP------------------------E------------------------------------------ 252 (579)
T ss_dssp EEEEEESSCSSSC------------------------S------------------------------------------
T ss_pred ceEEEeecCcccc------------------------c------------------------------------------
Confidence 2111110000000 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
....+.
T Consensus 253 --------------------------------------------------------------------------~~~~i~ 258 (579)
T 3sqw_A 253 --------------------------------------------------------------------------AHERID 258 (579)
T ss_dssp --------------------------------------------------------------------------SCTTEE
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHH----HHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCC
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPK----VQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSF 749 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~K----v~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~ 749 (1931)
.... .......+ +..+.+.+.. ...+.++||||+++..++.+++.|..... .+
T Consensus 259 ~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~ 315 (579)
T 3sqw_A 259 QSVV--------------------ISEKFANSIFAAVEHIKKQIKE--RDSNYKAIIFAPTVKFTSFLCSILKNEFK-KD 315 (579)
T ss_dssp EEEE--------------------EESSTTHHHHHHHHHHHHHHHH--TTTCCEEEEECSSHHHHHHHHHHHHHHHT-TT
T ss_pred eEEE--------------------EecchhhhHHHHHHHHHHHHhh--cCCCCcEEEECCcHHHHHHHHHHHHHhhc-CC
Confidence 0000 00000111 1122222222 24567999999999999999999986311 37
Q ss_pred ceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--
Q 000174 750 VKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD-- 827 (1931)
Q Consensus 750 ~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~-- 827 (1931)
+.+..+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+++..|+||+|||||.|..
T Consensus 316 ~~v~~~hg-----~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~ 390 (579)
T 3sqw_A 316 LPILEFHG-----KITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS 390 (579)
T ss_dssp SCEEEEST-----TSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE
T ss_pred CcEEEecC-----CCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCce
Confidence 88999999 99999999999999999999999999999999999999999999999999999999999999976
Q ss_pred EEEEEec
Q 000174 828 YILMIER 834 (1931)
Q Consensus 828 ~ivlv~~ 834 (1931)
+++++..
T Consensus 391 ~i~~~~~ 397 (579)
T 3sqw_A 391 SVLFICK 397 (579)
T ss_dssp EEEEEEG
T ss_pred EEEEEcc
Confidence 4444443
No 23
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=6.4e-39 Score=372.51 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=187.9
Q ss_pred hhhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCC--CCC-----CchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 000174 1589 SVDFHALEDALKIKFKDRGLLVEAITHASRPSS--GVS-----CYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLR 1661 (1931)
Q Consensus 1589 ~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~--~~~-----~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr 1661 (1931)
...+..||++|||+|+|+.||.+||||+||... ... +||||||||||||+++|++|||.+||++++|.||.+|
T Consensus 18 ~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r 97 (252)
T 1o0w_A 18 RKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVK 97 (252)
T ss_dssp HHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345889999999999999999999999998532 123 8999999999999999999999999999999999999
Q ss_pred HHhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccC
Q 000174 1662 AAAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGR 1741 (1931)
Q Consensus 1662 ~~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~ 1741 (1931)
+++|||.+||.+|.++||++||+.+..+.. .++...+++++|+|||+|||||+|+|+
T Consensus 98 ~~lV~~~~la~~a~~lgL~~~l~~~~~e~~-----------------------~~~~~~~~~lad~~EAliGAiyld~g~ 154 (252)
T 1o0w_A 98 SAAASEEVLAMVSRKMNLGKFLFLGKGEEK-----------------------TGGRDRDSILADAFEALLAAIYLDQGY 154 (252)
T ss_dssp HHHTSHHHHHHHHHHTTHHHHCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhCHHHHHHHHHHcCcHHhhccCchhhh-----------------------cCCCCCccHHHhHHHHHHHHHHHcCCH
Confidence 999999999999999999999998765431 122456999999999999999999986
Q ss_pred CceeEEeeeccCCCCCCCC---CCCCCCChHHHHHHHHhhcC-CceeEEec-cC----CeEEEEEEECCEEEEEeecCCH
Q 000174 1742 DTSVVWQVFQPLLDPMVTP---ETLPMHPVRELQERCQQQAE-GLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQK 1812 (1931)
Q Consensus 1742 ~~~~v~~~~~~~l~~~i~~---~~~~~~P~~~L~e~~~~~~~-~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~sk 1812 (1931)
+ .+++|+..++.+.+.. ....+||++.|||+||+++. .++|++.. .| +.|+|.|+|+|+.+++|.|.||
T Consensus 155 ~--~~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SK 232 (252)
T 1o0w_A 155 E--KIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTK 232 (252)
T ss_dssp H--HHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSH
T ss_pred H--HHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCH
Confidence 5 6778888888776543 33468999999999999887 46999754 44 4799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 000174 1813 KMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1813 k~Ak~~AA~~AL~~L~~~ 1830 (1931)
|+||+.||+.||+.|...
T Consensus 233 K~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 233 KEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999754
No 24
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.4e-38 Score=368.66 Aligned_cols=214 Identities=31% Similarity=0.408 Sum_probs=126.3
Q ss_pred HHHHHHHcCCCcCCHHHHHHHhcCCCCCC--CCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1592 FHALEDALKIKFKDRGLLVEAITHASRPS--SGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1592 ~~~le~~lgy~F~~~~LL~~AlTH~S~~~--~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
+..||++|||+| |+.||.+||||+||.. ....+||||||||||||+++|++|||.+||++++|.||.+|+.+|||++
T Consensus 7 l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 85 (242)
T 2a11_A 7 RQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQA 85 (242)
T ss_dssp CHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHH
Confidence 678999999999 9999999999999852 2356999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc---CchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeE
Q 000174 1670 FARVAVKH---KLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVV 1746 (1931)
Q Consensus 1670 La~~a~~~---gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v 1746 (1931)
||.+|.++ ||++||+.+..+.. .+....+++++|+|||+|||||+|+|++ .+
T Consensus 86 la~~a~~l~~~gL~~~l~~~~~e~~-----------------------~~~~~~~~~lad~~EAliGAiyld~g~~--~~ 140 (242)
T 2a11_A 86 LADVARRLCAEGLGVHVLLGRGEAN-----------------------TGGADKSSILADGMESLLGAIYLQHGME--KA 140 (242)
T ss_dssp HHHHHHHHSSSCSGGGCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCHH--HH
T ss_pred HHHHHHHhhhhChHHHhhcCchhhh-----------------------cCCCCCccHHHHHHHHHHHHHHhcCCHH--HH
Confidence 99999999 99999998766431 1223568999999999999999999865 67
Q ss_pred EeeeccCCCCCCCCCC---CCCCChHHHHHHHHhhcCC-ceeEEeccCC----eEEEEEEECCEEEEEeecCCHHHHHHH
Q 000174 1747 WQVFQPLLDPMVTPET---LPMHPVRELQERCQQQAEG-LEYKASRSGN----LATVEVYIDGVQVGVAQNPQKKMAQKL 1818 (1931)
Q Consensus 1747 ~~~~~~~l~~~i~~~~---~~~~P~~~L~e~~~~~~~~-~~y~~~~~g~----~f~v~V~v~g~~~~~g~g~skk~Ak~~ 1818 (1931)
++|+.+++.|.+.... ..+|||+.|||+||+++.. ++|++...|+ .|+|.|+|+|+.+++|.|.|||+||+.
T Consensus 141 ~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~ 220 (242)
T 2a11_A 141 REVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQK 220 (242)
T ss_dssp HHHHHHHTHHHHHHTTC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHH
Confidence 7888888877654322 3679999999999998865 6998766654 699999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 000174 1819 AARNALAVLKEKE 1831 (1931)
Q Consensus 1819 AA~~AL~~L~~~~ 1831 (1931)
||+.||+.|....
T Consensus 221 AA~~AL~~L~~~~ 233 (242)
T 2a11_A 221 AAAAAWKALEVLD 233 (242)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhcc
Confidence 9999999997653
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=396.55 Aligned_cols=331 Identities=22% Similarity=0.234 Sum_probs=146.1
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
++...+..+...+.+.++++..|+++|.++++.++. +++|++++||||||++|++++.+.+.. ....+++|||+
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~---~~~~~~~lil~ 169 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---ANKYPQCLCLS 169 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCT---TSCSCCEEEEC
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhh---cCCCCcEEEEe
Confidence 444444444455888999999999999999999997 789999999999999999998765542 23445799999
Q ss_pred CChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEe
Q 000174 359 PKVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILD 433 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~D 433 (1931)
||++|+.|++++++.+. ++.+....|+...... .....+|+|+||++|.+++.+ +.+.+.++++||||
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViD 242 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEE
Confidence 99999999999988754 4677777776543221 124678999999999999865 67788999999999
Q ss_pred CCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 434 ECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 434 EaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
|||++.....|...+..+....+. .++++++||||.. .+..+.. .+.+.|
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~------------~~~~~~~----------------~~~~~~ 292 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFED------------SVWKFAQ----------------KVVPDP 292 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCT--TSEEEEEESCCCH------------HHHHHHH----------------HHSSSE
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCc--cceEEEEeCCCCH------------HHHHHHH----------------HHcCCC
Confidence 999999766788777777665443 4899999999863 1111111 112222
Q ss_pred ceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHH
Q 000174 514 SEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAIN 593 (1931)
Q Consensus 514 ~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~ 593 (1931)
....+ ..... ..
T Consensus 293 ~~i~~--~~~~~------~~------------------------------------------------------------ 304 (479)
T 3fmp_B 293 NVIKL--KREEE------TL------------------------------------------------------------ 304 (479)
T ss_dssp EEEEE--C------------------------------------------------------------------------
T ss_pred eEEec--ccccc------Cc------------------------------------------------------------
Confidence 11111 00000 00
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccc
Q 000174 594 YALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIE 673 (1931)
Q Consensus 594 ~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 673 (1931)
..+.+ .++.
T Consensus 305 ---~~~~~------------------------------~~~~-------------------------------------- 313 (479)
T 3fmp_B 305 ---DTIKQ------------------------------YYVL-------------------------------------- 313 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---CCceE------------------------------EEEE--------------------------------------
Confidence 00000 0000
Q ss_pred cccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeE
Q 000174 674 EGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSA 753 (1931)
Q Consensus 674 ~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~ 753 (1931)
......|...|..++.. ....++||||+++..+..+++.|.. .++.+.
T Consensus 314 -------------------------~~~~~~~~~~l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L~~----~~~~v~ 361 (479)
T 3fmp_B 314 -------------------------CSSRDEKFQALCNLYGA---ITIAQAMIFCHTRKTASWLAAELSK----EGHQVA 361 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------eCCHHHHHHHHHHHHhh---ccCCceEEEeCcHHHHHHHHHHHHh----CCccEE
Confidence 00001123333333332 2346899999999999999999987 578899
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC------CHHHHHHhhccCCCCCCc
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK------TVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~------s~~~yiQr~GRa~R~Gs~ 827 (1931)
.+|| ++++.+|..++++|++|+++|||||+++++|||+|+|++||+||+|+ +..+|+||+|||||.|..
T Consensus 362 ~lh~-----~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~ 436 (479)
T 3fmp_B 362 LLSG-----EMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 436 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecC-----CCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCC
Confidence 9999 99999999999999999999999999999999999999999999995 568999999999999876
Q ss_pred E
Q 000174 828 Y 828 (1931)
Q Consensus 828 ~ 828 (1931)
+
T Consensus 437 G 437 (479)
T 3fmp_B 437 G 437 (479)
T ss_dssp -
T ss_pred c
Confidence 3
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.5e-37 Score=386.32 Aligned_cols=331 Identities=17% Similarity=0.217 Sum_probs=148.1
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.+++.+..+...+.+...++.+|+++|.++++.+++ +++++++|||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~P~ 98 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---SVKAPQALMLAPT 98 (394)
T ss_dssp SSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT---TCCSCCEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc---cCCCCCEEEEcCC
Confidence 455555444455888889999999999999999998 899999999999999999998766542 2345689999999
Q ss_pred hhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 361 VPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
++|+.||+++++++. ++++..++|+..... ....+.+++|+|+||+.|.+.+.++.+.+.++++||+||||+
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHMDIKVHACIGGTSFVE-----DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHH-----HHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEeCCCchHH-----HHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 999999999999864 688999998865321 122234789999999999999988888889999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+... .|...+..+....+ ..+++++|||||.. .+..+. ..+...|....
T Consensus 174 ~~~~-~~~~~~~~~~~~~~--~~~~~i~~SAT~~~------------~~~~~~----------------~~~~~~~~~~~ 222 (394)
T 1fuu_A 174 MLSS-GFKEQIYQIFTLLP--PTTQVVLLSATMPN------------DVLEVT----------------TKFMRNPVRIL 222 (394)
T ss_dssp HHHT-TCHHHHHHHHHHSC--TTCEEEEECSSCCH------------HHHHHH----------------HHHCCSCEEEE
T ss_pred hhCC-CcHHHHHHHHHhCC--CCceEEEEEEecCH------------HHHHHH----------------HHhcCCCeEEE
Confidence 9875 56666666665543 24789999999863 111111 11112222111
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
...... . . .
T Consensus 223 ~~~~~~-~----~------------------------------------------------------------------~ 231 (394)
T 1fuu_A 223 VKKDEL-T----L------------------------------------------------------------------E 231 (394)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecCccc-c----C------------------------------------------------------------------C
Confidence 100000 0 0 0
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
.+.. .+..
T Consensus 232 ~~~~------------------------------~~~~------------------------------------------ 239 (394)
T 1fuu_A 232 GIKQ------------------------------FYVN------------------------------------------ 239 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceE------------------------------EEEE------------------------------------------
Confidence 0000 0000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEc
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIG 757 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G 757 (1931)
......|...+.+++... ...++||||+++..+..+++.|+. .++.+..+||
T Consensus 240 ---------------------~~~~~~~~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~ 291 (394)
T 1fuu_A 240 ---------------------VEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------cCchhhHHHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHH----cCCeEEEeeC
Confidence 000001222233333322 346899999999999999999987 5788999999
Q ss_pred cCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 758 HNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 758 ~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++..+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.
T Consensus 292 -----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 356 (394)
T 1fuu_A 292 -----DLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 356 (394)
T ss_dssp ----------------------------------------------------------------------
T ss_pred -----CCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999876
No 27
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=3.6e-38 Score=375.63 Aligned_cols=221 Identities=23% Similarity=0.255 Sum_probs=121.6
Q ss_pred HHHHHHcCCC-cCCHHHHHHHhcCCCCCCCC---------CCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 000174 1593 HALEDALKIK-FKDRGLLVEAITHASRPSSG---------VSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRA 1662 (1931)
Q Consensus 1593 ~~le~~lgy~-F~~~~LL~~AlTH~S~~~~~---------~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~ 1662 (1931)
..||++|||+ |+|+.||.+||||+||.... ..+||||||||||||+++|++|||.+||++++|.||.+|+
T Consensus 86 ~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~ 165 (341)
T 3rv0_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (341)
T ss_dssp CTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3589999999 99999999999999997532 3589999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccc-cC
Q 000174 1663 AAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS-GR 1741 (1931)
Q Consensus 1663 ~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDs-g~ 1741 (1931)
++|||.+||.+|.++||+++|+++.+.... .++...+++++|+|||+|||||+|+ |.
T Consensus 166 ~lVs~~~La~iA~~lgL~~~l~~~~g~~~~----------------------~~~~~~~~ilaD~fEAlIGAIylD~~~~ 223 (341)
T 3rv0_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTR----------------------VVKDKMSKRYADCVEAYIGALVIDRFGT 223 (341)
T ss_dssp HHHSHHHHHHHHHHTTTTTTTCCSSCCC--------------------------CCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCHHHHHHHHHHcCcHHHhhhcCChhhh----------------------ccCCccccHHHHHHHHHHHHHhhcCccC
Confidence 999999999999999999999964322100 0112358999999999999999999 33
Q ss_pred CceeEEeeeccCCCCCCCC-------CCCCCCChHHHHHHHHhhcC--CceeEEeccCCeEEEEEEECCEEEEEeecCCH
Q 000174 1742 DTSVVWQVFQPLLDPMVTP-------ETLPMHPVRELQERCQQQAE--GLEYKASRSGNLATVEVYIDGVQVGVAQNPQK 1812 (1931)
Q Consensus 1742 ~~~~v~~~~~~~l~~~i~~-------~~~~~~P~~~L~e~~~~~~~--~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~sk 1812 (1931)
+++.+++|+.+++.+.+.. ....+|||+.||||||+++. .++|++..+.+.|+|.|+|+|+.+|.|.|.||
T Consensus 224 G~~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~GpF~v~v~i~~~~~g~G~G~SK 303 (341)
T 3rv0_A 224 EFLDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILLDEAEGNSI 303 (341)
T ss_dssp TTHHHHHHHHHHTHHHHHCGGGC---------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCCEEEEEEECCEEEEEEEeCCH
Confidence 4557788888877776543 13458999999999999874 35899765544599999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 000174 1813 KMAQKLAARNALAVLKEKETAEA 1835 (1931)
Q Consensus 1813 k~Ak~~AA~~AL~~L~~~~~~~~ 1835 (1931)
|+|++.||+.||+.|+.......
T Consensus 304 K~AEq~AA~~AL~~L~~~~k~~~ 326 (341)
T 3rv0_A 304 REAEHRAAMKVLENDELLRKYSV 326 (341)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Confidence 99999999999999987644433
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4e-35 Score=360.96 Aligned_cols=304 Identities=23% Similarity=0.284 Sum_probs=230.2
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+.+.+.|+..|+|+|.++++.+++ +++++.+|||+|||++|++++.+. +.++|||+|+++|+.||++++
T Consensus 6 ~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---------~~~~liv~P~~~L~~q~~~~~ 76 (337)
T 2z0m_A 6 EQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---------GMKSLVVTPTRELTRQVASHI 76 (337)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---------TCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---------cCCEEEEeCCHHHHHHHHHHH
Confidence 3678889999999999999999998 899999999999999999987642 356999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
+++. +.++..++|+.... .+...+..++|+|+||++|.+.+.++.+.+.++++||+||||++... .+...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~~~~~~ 150 (337)
T 2z0m_A 77 RDIGRYMDTKVAEVYGGMPYK-----AQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM-GFIDDI 150 (337)
T ss_dssp HHHTTTSCCCEEEECTTSCHH-----HHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT-TCHHHH
T ss_pred HHHhhhcCCcEEEEECCcchH-----HHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc-ccHHHH
Confidence 9764 67899998876532 22233456999999999999999888888999999999999999875 566666
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHH-HHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhh
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC-NLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~-~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 527 (1931)
..+....+ ..+++++|||||.. .+. .+...+ ..+.........
T Consensus 151 ~~~~~~~~--~~~~~~~~SAT~~~------------~~~~~~~~~~-----------------~~~~~~~~~~~~----- 194 (337)
T 2z0m_A 151 KIILAQTS--NRKITGLFSATIPE------------EIRKVVKDFI-----------------TNYEEIEACIGL----- 194 (337)
T ss_dssp HHHHHHCT--TCSEEEEEESCCCH------------HHHHHHHHHS-----------------CSCEEEECSGGG-----
T ss_pred HHHHhhCC--cccEEEEEeCcCCH------------HHHHHHHHhc-----------------CCceeeeccccc-----
Confidence 66665443 34788899999863 111 111111 111100000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
T Consensus 195 -------------------------------------------------------------------------------- 194 (337)
T 2z0m_A 195 -------------------------------------------------------------------------------- 194 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
..+.... ..
T Consensus 195 --------------------------------------------------------------~~~~~~~------~~--- 203 (337)
T 2z0m_A 195 --------------------------------------------------------------ANVEHKF------VH--- 203 (337)
T ss_dssp --------------------------------------------------------------GGEEEEE------EE---
T ss_pred --------------------------------------------------------------CCceEEE------EE---
Confidence 0000000 00
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHH
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTF 767 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~ 767 (1931)
...+....++.+. ...+.++||||+++..+..+++.|. .+..+|| +++..
T Consensus 204 --------------~~~~~~~~~~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~-----~~~~~ 253 (337)
T 2z0m_A 204 --------------VKDDWRSKVQALR---ENKDKGVIVFVRTRNRVAKLVRLFD--------NAIELRG-----DLPQS 253 (337)
T ss_dssp --------------CSSSSHHHHHHHH---TCCCSSEEEECSCHHHHHHHHTTCT--------TEEEECT-----TSCHH
T ss_pred --------------eChHHHHHHHHHH---hCCCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcC-----CCCHH
Confidence 0000011122222 2456789999999999999988775 4678999 99999
Q ss_pred HHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 768 QMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 768 ~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|.+++++|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+|||||.|+..
T Consensus 254 ~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g 314 (337)
T 2z0m_A 254 VRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKG 314 (337)
T ss_dssp HHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCE
T ss_pred HHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999998773
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.4e-35 Score=376.27 Aligned_cols=314 Identities=15% Similarity=0.188 Sum_probs=231.0
Q ss_pred chhhhhc-CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEK-MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~-~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+.+ .++..|||+|.++++.+++ +|+++.+|||+|||++|++|+... .+++|||+|+++|+.||.+
T Consensus 13 ~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---------~g~~lvi~P~~aL~~q~~~ 83 (523)
T 1oyw_A 13 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---------NGLTVVVSPLISLMKDQVD 83 (523)
T ss_dssp HHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---------SSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---------CCCEEEECChHHHHHHHHH
Confidence 3456666 8999999999999999998 999999999999999999997531 3579999999999999999
Q ss_pred HHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC-CcHHHH
Q 000174 370 VIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK-HPYSLV 447 (1931)
Q Consensus 370 ~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~-~~~~~i 447 (1931)
.++. +++.+..++|+...+.+. ..+... ....+|+|+||++|........+...++++|||||||++... +.|...
T Consensus 84 ~l~~-~gi~~~~l~~~~~~~~~~-~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~ 161 (523)
T 1oyw_A 84 QLQA-NGVAAACLNSTQTREQQL-EVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161 (523)
T ss_dssp HHHH-TTCCEEEECTTSCHHHHH-HHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHH
T ss_pred HHHH-cCCcEEEEeCCCCHHHHH-HHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHH
Confidence 9987 588999998886644322 223322 246899999999996432223345578999999999999753 334443
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC---CeEEEecchHHHhhhCCCCceeEEEeccch
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD---SVVCTIKDRKELEKHVPMPSEVVVEYDKAA 524 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~---~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~ 524 (1931)
+..+..........++++|||||.. .. ...+...+. ..+... ....|.....
T Consensus 162 ~~~l~~l~~~~~~~~~i~lSAT~~~--------~~---~~~i~~~l~~~~~~~~~~--------~~~r~~l~~~------ 216 (523)
T 1oyw_A 162 YAALGQLRQRFPTLPFMALTATADD--------TT---RQDIVRLLGLNDPLIQIS--------SFDRPNIRYM------ 216 (523)
T ss_dssp HHGGGGHHHHCTTSCEEEEESCCCH--------HH---HHHHHHHHTCCSCEEEEC--------CCCCTTEEEE------
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCH--------HH---HHHHHHHhCCCCCeEEeC--------CCCCCceEEE------
Confidence 3322221111223678999999863 00 011111111 000000 0000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
T Consensus 217 -------------------------------------------------------------------------------- 216 (523)
T 1oyw_A 217 -------------------------------------------------------------------------------- 216 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
T Consensus 217 -------------------------------------------------------------------------------- 216 (523)
T 1oyw_A 217 -------------------------------------------------------------------------------- 216 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccc
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEM 764 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~ 764 (1931)
+ .....+...|+++|... .+.++||||+++..++.+++.|.. .++.+..+|| ++
T Consensus 217 ------------v--~~~~~~~~~l~~~l~~~---~~~~~IVf~~sr~~~e~l~~~L~~----~g~~~~~~h~-----~l 270 (523)
T 1oyw_A 217 ------------L--MEKFKPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHA-----GL 270 (523)
T ss_dssp ------------E--EECSSHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TS
T ss_pred ------------E--EeCCCHHHHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHH----CCCCEEEecC-----CC
Confidence 0 00122455566666543 467899999999999999999998 5789999999 99
Q ss_pred cHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 765 RTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 765 ~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+..+|.+++++|++|+.+|||||+++++|||+|+|++||+||+|+|+.+|+||+|||||.|..
T Consensus 271 ~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 271 ENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred CHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999866
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-34 Score=378.86 Aligned_cols=315 Identities=15% Similarity=0.205 Sum_probs=230.4
Q ss_pred hhhhhc-CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 293 SEAKEK-MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 293 ~~~l~~-~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
.+.+.. .|+..|||+|.++++.++. +|+|+.+|||+|||++|++|+.. ..+++|||+|+++|+.||.+.
T Consensus 33 ~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---------~~g~~lVisP~~~L~~q~~~~ 103 (591)
T 2v1x_A 33 KDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---------SDGFTLVICPLISLMEDQLMV 103 (591)
T ss_dssp HHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---------SSSEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---------cCCcEEEEeCHHHHHHHHHHH
Confidence 356666 6999999999999999999 89999999999999999999853 145899999999999999999
Q ss_pred HHHHcCCcEEEEeCCCcccccchHHHHhh---cCCccEEEEcHHHHH------HHHhcccccccceeEEEEeCCCcccCC
Q 000174 371 IREQTGYVVGHYCGEMGQDFWDAQRWQRE---FDTKQVLVMTAQILL------NILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 371 l~~~~~l~v~~~~G~~~~~~~~~~~w~~~---~~~~~IlV~Tpq~L~------d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
++.+ ++++..++|+...... ...|... ....+|+|+||++|. +.+.+ ...+.++++|||||||++...
T Consensus 104 l~~~-gi~~~~l~~~~~~~~~-~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 104 LKQL-GISATMLNASSSKEHV-KWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp HHHH-TCCEEECCSSCCHHHH-HHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTT
T ss_pred HHhc-CCcEEEEeCCCCHHHH-HHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECccccccc
Confidence 9986 8999999998764332 2223332 357899999999874 23332 345778999999999998753
Q ss_pred -CcHHHHHHH---HHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCC---eEEEecchHHHhhhCCCCc
Q 000174 442 -HPYSLVMSE---FYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDS---VVCTIKDRKELEKHVPMPS 514 (1931)
Q Consensus 442 -~~~~~im~~---~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~---~i~t~~~~~~l~~~~~~p~ 514 (1931)
|.|...+.. +.... ...++++|||||.. .. ...+...+.. .++.. ....|.
T Consensus 181 g~dfr~~~~~l~~l~~~~---~~~~ii~lSAT~~~--------~v---~~~i~~~l~~~~~~~~~~--------~~~r~n 238 (591)
T 2v1x_A 181 GHDFRPDYKALGILKRQF---PNASLIGLTATATN--------HV---LTDAQKILCIEKCFTFTA--------SFNRPN 238 (591)
T ss_dssp CTTCCGGGGGGGHHHHHC---TTSEEEEEESSCCH--------HH---HHHHHHHTTCCSCEEEEC--------CCCCTT
T ss_pred ccccHHHHHHHHHHHHhC---CCCcEEEEecCCCH--------HH---HHHHHHHhCCCCcEEEec--------CCCCcc
Confidence 334433322 22222 24789999999863 01 1111111110 00000 000010
Q ss_pred eeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHH
Q 000174 515 EVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINY 594 (1931)
Q Consensus 515 e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~ 594 (1931)
.......
T Consensus 239 l~~~v~~------------------------------------------------------------------------- 245 (591)
T 2v1x_A 239 LYYEVRQ------------------------------------------------------------------------- 245 (591)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred cEEEEEe-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccc
Q 000174 595 ALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEE 674 (1931)
Q Consensus 595 ~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 674 (1931)
T Consensus 246 -------------------------------------------------------------------------------- 245 (591)
T 2v1x_A 246 -------------------------------------------------------------------------------- 245 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEE
Q 000174 675 GELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSAS 754 (1931)
Q Consensus 675 ~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~ 754 (1931)
.......++..|++++... ..+.++||||+++..++.+++.|.. .++.+..
T Consensus 246 -----------------------~~~~~~~~~~~l~~~l~~~--~~~~~~IVf~~sr~~~e~la~~L~~----~g~~~~~ 296 (591)
T 2v1x_A 246 -----------------------KPSNTEDFIEDIVKLINGR--YKGQSGIIYCFSQKDSEQVTVSLQN----LGIHAGA 296 (591)
T ss_dssp -----------------------CCSSHHHHHHHHHHHHTTT--TTTCEEEEECSSHHHHHHHHHHHHH----TTCCEEE
T ss_pred -----------------------CCCcHHHHHHHHHHHHHHh--ccCCCeEEEeCcHHHHHHHHHHHHH----CCCCEEE
Confidence 0000012334444444332 2467899999999999999999998 5789999
Q ss_pred EEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 755 LIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 755 l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|| +|++.+|.+++++|++|+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|||||.|...
T Consensus 297 ~h~-----~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g 365 (591)
T 2v1x_A 297 YHA-----NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKA 365 (591)
T ss_dssp ECT-----TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCE
T ss_pred ecC-----CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCc
Confidence 999 999999999999999999999999999999999999999999999999999999999999999773
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.4e-35 Score=369.93 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=221.4
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
+++....+|+|+|.++++.+++ +|+|+++|||+|||++|++++...+. .++++|||+||++|+.||+++++.+
T Consensus 14 l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 14 FKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc------CCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4443345899999999999998 89999999999999999998876552 3567999999999999999999997
Q ss_pred --cCCcEEEEeCCCcccccchHHHHhhcCC-ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC----------
Q 000174 375 --TGYVVGHYCGEMGQDFWDAQRWQREFDT-KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK---------- 441 (1931)
Q Consensus 375 --~~l~v~~~~G~~~~~~~~~~~w~~~~~~-~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~---------- 441 (1931)
.++++..++|+.....+ ...|.....+ ++|+|+||++|.+++.. +.+.++++|||||||++...
T Consensus 88 ~~~~~~v~~~~g~~~~~~~-~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 88 ADEKVKIFGFYSSMKKEEK-EKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp CCSSCCEEECCTTSCHHHH-HHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred ccCCceEEEEECCCChhhH-HHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhh
Confidence 47899999998865432 2334444444 99999999999988875 67789999999999987532
Q ss_pred CcHHHH-HHHHHhhcC---------CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC
Q 000174 442 HPYSLV-MSEFYHTTS---------KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP 511 (1931)
Q Consensus 442 ~~~~~i-m~~~~~~~~---------~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~ 511 (1931)
++|... +..++...+ ....++++++||||....... . + +...+.- .+.
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~---~----~--~~~~~~~-------------~~~ 222 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP---L----L--FRDLLNF-------------TVG 222 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTT---H----H--HHHHHSC-------------CSS
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHH---H----H--HHHhhcc-------------CcC
Confidence 122222 344443322 114579999999954311000 0 0 0000000 000
Q ss_pred CCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHH
Q 000174 512 MPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRA 591 (1931)
Q Consensus 512 ~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~ 591 (1931)
..
T Consensus 223 ~~------------------------------------------------------------------------------ 224 (414)
T 3oiy_A 223 RL------------------------------------------------------------------------------ 224 (414)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccc
Q 000174 592 INYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNE 671 (1931)
Q Consensus 592 ~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 671 (1931)
......
T Consensus 225 --------------------------------------------------------------------------~~~~~~ 230 (414)
T 3oiy_A 225 --------------------------------------------------------------------------VSVARN 230 (414)
T ss_dssp --------------------------------------------------------------------------CCCCCS
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000000
Q ss_pred cccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCce
Q 000174 672 IEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVK 751 (1931)
Q Consensus 672 l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~ 751 (1931)
+.. .. ...+|...|.++|... +.++||||+++..++.+++.|.. .+++
T Consensus 231 i~~---------------------~~---~~~~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~----~~~~ 278 (414)
T 3oiy_A 231 ITH---------------------VR---ISSRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKR----FKFN 278 (414)
T ss_dssp EEE---------------------EE---ESSCCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHH----TTCC
T ss_pred chh---------------------ee---eccCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHH----cCCc
Confidence 000 00 0013555667777663 47899999999999999999998 5788
Q ss_pred eE-EEEccCCCccccHHHHHHHHHHhhcCCceEEEE----ecccccCCCCCC-CCEEEEcCCC--CCHHHHHHhhccCCC
Q 000174 752 SA-SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA----TSVAEEGLDIRQ-CNVVIRFDLA--KTVLAYIQSRGRARK 823 (1931)
Q Consensus 752 ~~-~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa----TdVaeeGlDip~-~~lVI~fD~p--~s~~~yiQr~GRa~R 823 (1931)
+. .+|| . +|+ +++|++|+++|||| |+++++|||+|+ |++||+||+| +++.+|+||+|||||
T Consensus 279 ~~~~~h~-----~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR 347 (414)
T 3oiy_A 279 VGETWSE-----F----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSR 347 (414)
T ss_dssp EEESSSC-----H----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCC
T ss_pred eehhhcC-----c----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCcccc
Confidence 87 8888 3 333 99999999999999 999999999999 9999999999 999999999999999
Q ss_pred CC
Q 000174 824 PG 825 (1931)
Q Consensus 824 ~G 825 (1931)
.|
T Consensus 348 ~g 349 (414)
T 3oiy_A 348 IL 349 (414)
T ss_dssp EE
T ss_pred CC
Confidence 87
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-35 Score=382.20 Aligned_cols=325 Identities=18% Similarity=0.234 Sum_probs=210.8
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
..+.+...++..|+++|.++++.+++ +++|++++||||||++|++++.+.+.. ...+.++|||+|+++|+.||+
T Consensus 130 ~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~---~~~~~~vLvl~P~~~L~~Q~~ 206 (508)
T 3fho_A 130 XXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDA---SVPKPQAICLAPSRELARQIM 206 (508)
T ss_dssp ---------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCT---TCCSCCEEEECSCHHHHHHHH
T ss_pred cccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHh---CCCCceEEEEECcHHHHHHHH
Confidence 33566778888999999999999987 789999999999999999998876543 234568999999999999999
Q ss_pred HHHHHHcC---CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHH
Q 000174 369 EVIREQTG---YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 369 ~~l~~~~~---l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
+.++++++ +.+....++... ......++|+|+||++|.+.+.++.+.+.++++|||||||++.....|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~ 278 (508)
T 3fho_A 207 DVVTEMGKYTEVKTAFGIKDSVP--------KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLG 278 (508)
T ss_dssp HHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CH
T ss_pred HHHHHhCCccCeeEEEEeCCccc--------ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcH
Confidence 99999763 333333333211 1122478999999999999999888889999999999999998766777
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchh
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAAS 525 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~ 525 (1931)
..+..+....+. ..++++|||||.. .+..+...+. ..+....+ .....
T Consensus 279 ~~~~~i~~~~~~--~~~~i~lSAT~~~------------~~~~~~~~~~----------------~~~~~i~~--~~~~~ 326 (508)
T 3fho_A 279 DQSMRIKHLLPR--NTQIVLFSATFSE------------RVEKYAERFA----------------PNANEIRL--KTEEL 326 (508)
T ss_dssp HHHHHHHHHSCT--TCEEEEEESCCST------------HHHHHHHHHS----------------TTCEEECC--CCCC-
T ss_pred HHHHHHHHhCCc--CCeEEEEeCCCCH------------HHHHHHHHhc----------------CCCeEEEe--ccccC
Confidence 777777665543 4789999999863 1122211111 11110000 00000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
.
T Consensus 327 --~----------------------------------------------------------------------------- 327 (508)
T 3fho_A 327 --S----------------------------------------------------------------------------- 327 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --C-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
...+...
T Consensus 328 ---------------------------------------------------------------~~~~~~~---------- 334 (508)
T 3fho_A 328 ---------------------------------------------------------------VEGIKQL---------- 334 (508)
T ss_dssp -----------------------------------------------------------------CCCCE----------
T ss_pred ---------------------------------------------------------------cccceEE----------
Confidence 0000000
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
.........|...+.+++... ...++||||+++..+..+++.|.+ .++.+..+|| +++
T Consensus 335 ----------~~~~~~~~~k~~~l~~ll~~~---~~~~~LVF~~s~~~a~~l~~~L~~----~~~~v~~~hg-----~~~ 392 (508)
T 3fho_A 335 ----------YMDCQSEEHKYNVLVELYGLL---TIGQSIIFCKKKDTAEEIARRMTA----DGHTVACLTG-----NLE 392 (508)
T ss_dssp ----------EEEC--CHHHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTT----TTCCCCEEC---------
T ss_pred ----------EEECCchHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHh----CCCcEEEEeC-----CCC
Confidence 000001123444455555332 457899999999999999999987 5788999999 999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCC------CCHHHHHHhhccCCCCCCc--EEEEEe
Q 000174 766 TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLA------KTVLAYIQSRGRARKPGSD--YILMIE 833 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p------~s~~~yiQr~GRa~R~Gs~--~ivlv~ 833 (1931)
..+|++++++|++|+.+|||||+++++|||+|+|++||+||+| .++.+|+||+|||||.|.. .++++.
T Consensus 393 ~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 393 GAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp -CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999999 8899999999999999865 444444
No 33
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.6e-34 Score=370.73 Aligned_cols=348 Identities=22% Similarity=0.235 Sum_probs=234.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc-E
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV-V 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~-v 379 (1931)
.+|+|||.++++.+++ +++|++++||+|||++|++++... +.++||||||++|+.||.+++++ ++++ +
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v 161 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGI-FGEEYV 161 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGG-GCGGGE
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHh-CCCcce
Confidence 5899999999999988 779999999999999999988753 35699999999999999999999 7999 9
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
+.++|+.. ...+|+|+||+.+...+.. ...++++|||||||++.+. .|..+++.+ .
T Consensus 162 ~~~~g~~~-------------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~-~~~~~~~~~-------~ 217 (472)
T 2fwr_A 162 GEFSGRIK-------------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQIAQMS-------I 217 (472)
T ss_dssp EEBSSSCB-------------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTST-TTHHHHHTC-------C
T ss_pred EEECCCcC-------------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCCh-HHHHHHHhc-------C
Confidence 99988754 2468999999999876542 1256999999999999875 676654322 2
Q ss_pred CcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHH
Q 000174 460 RPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVA 539 (1931)
Q Consensus 460 ~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~ 539 (1931)
.+++|+|||||.+.++. ...++..+...++.....+....+...+....+..+........ +..+...
T Consensus 218 ~~~~l~lSATp~~~~~~---------~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~ 285 (472)
T 2fwr_A 218 APFRLGLTATFEREDGR---------HEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVE---YEKREKV 285 (472)
T ss_dssp CSEEEEEESCCCCTTSG---------GGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHH---TTTTTHH
T ss_pred CCeEEEEecCccCCCCH---------HHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHH---HHHHHHH
Confidence 47899999999965542 12456667777666533332223333333322322221110000 0000000
Q ss_pred HHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 000174 540 VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDE 619 (1931)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~ 619 (1931)
+...+. .....+..... ............ .....
T Consensus 286 ~~~~l~----~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~----------------------------------- 319 (472)
T 2fwr_A 286 YKQFLR----ARGITLRRAED------FNKIVMASGYDE-RAYEA----------------------------------- 319 (472)
T ss_dssp HHSCSS----SCCCTTTCCSS------STTTTTTTCCSS-SSSTT-----------------------------------
T ss_pred HHHHHH----hcCccccchhh------HHHHHHHhccCH-HHHHH-----------------------------------
Confidence 000000 00000000000 000000000000 00000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccC
Q 000174 620 RANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVAD 699 (1931)
Q Consensus 620 ~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~ 699 (1931)
.... .... ...
T Consensus 320 -----~~~~---~~~~-------------------------------------------------------------~~~ 330 (472)
T 2fwr_A 320 -----LRAW---EEAR-------------------------------------------------------------RIA 330 (472)
T ss_dssp -----THHH---HHHH-------------------------------------------------------------HHH
T ss_pred -----HHHH---HHHH-------------------------------------------------------------HHh
Confidence 0000 0000 000
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
...+.|...|.++|... .+.++||||+++.+++.+++.|. +..+|| +++..+|++++++|++|
T Consensus 331 ~~~~~k~~~l~~~l~~~---~~~k~lvF~~~~~~~~~l~~~l~---------~~~~~g-----~~~~~~R~~~~~~F~~g 393 (472)
T 2fwr_A 331 FNSKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFL---------IPAITH-----RTSREEREEILEGFRTG 393 (472)
T ss_dssp HSCSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTT---------CCBCCS-----SSCSHHHHTHHHHHHHS
T ss_pred hcChHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHhC---------cceeeC-----CCCHHHHHHHHHHHhCC
Confidence 12357888899988773 57899999999999999998874 345788 89999999999999999
Q ss_pred CceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 780 RVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 780 ~~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++|||||+++++|||+|+|++||+||+|+|+..|+||+|||+|.|+.
T Consensus 394 ~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 394 RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp SCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred CCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999999999999999999998854
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=383.75 Aligned_cols=158 Identities=22% Similarity=0.246 Sum_probs=136.3
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
..+......+|+++|.++++.++. +++|++++||||||++|++++...+. .+.++||++||++|+.|+++.++
T Consensus 175 ~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~------~g~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 175 VNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh------cCCeEEEEcCcHHHHHHHHHHHH
Confidence 344567778999999999999988 99999999999999999999987764 35689999999999999999999
Q ss_pred HHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHH
Q 000174 373 EQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFY 452 (1931)
Q Consensus 373 ~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~ 452 (1931)
..++ .+++++|+.... .+++|+|+||++|.+++.++...+.++++|||||||++.+. .+...+..++
T Consensus 249 ~~~~-~VglltGd~~~~-----------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~-~rg~~~e~ii 315 (1108)
T 3l9o_A 249 AEFG-DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETI 315 (1108)
T ss_dssp HHTS-SEEEECSSCBCC-----------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH-HHHHHHHHHH
T ss_pred HHhC-CccEEeCccccC-----------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc-chHHHHHHHH
Confidence 9888 899999987642 46899999999999999988888999999999999999874 6677777666
Q ss_pred hhcCCCCCcEEEEEeecCCC
Q 000174 453 HTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 453 ~~~~~~~~p~iLgLTATP~~ 472 (1931)
...+. .+++++||||+.+
T Consensus 316 ~~l~~--~~qvl~lSATipn 333 (1108)
T 3l9o_A 316 ILLPD--KVRYVFLSATIPN 333 (1108)
T ss_dssp HHSCT--TSEEEEEECSCSS
T ss_pred HhcCC--CceEEEEcCCCCC
Confidence 65543 4899999999654
No 35
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.8e-32 Score=356.12 Aligned_cols=367 Identities=16% Similarity=0.202 Sum_probs=229.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
..|+|||.++++++.. +++|++++||+|||++++.++..+.. .+...++|||||+ .|+.||.+++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~----~~~~~~~LIv~P~-~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK----ENELTPSLVICPL-SVLKNWEEELSKFAP 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH----TTCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCCCCEEEEccH-HHHHHHHHHHHHHCC
Confidence 5799999999998742 78999999999999999988876654 2345679999995 69999999999987
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhc
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTT 455 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~ 455 (1931)
++++.+++|+... ......+|+|+||+.+.+... +....|++||+||||++.+... ...+.+.. .
T Consensus 111 ~~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~-l 175 (500)
T 1z63_A 111 HLRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKE-L 175 (500)
T ss_dssp TSCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTS--HHHHHHHT-S
T ss_pred CceEEEEecCchh---------ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhH--HHHHHHHh-h
Confidence 5788888876532 112567999999999976443 4456799999999999987532 22222221 1
Q ss_pred CCCCCcEEEEEeecCCCCCCCCchhHHHHHHH------------------------------HHHHhcCCeEEEecc-hH
Q 000174 456 SKEKRPSVFGMTASPVNLKGVSSQVDCAIKIC------------------------------NLESKLDSVVCTIKD-RK 504 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~------------------------------~Le~~l~~~i~t~~~-~~ 504 (1931)
..+++++|||||... +..++...+. .|...+...+..... ..
T Consensus 176 ---~~~~~l~LTaTP~~n----~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~ 248 (500)
T 1z63_A 176 ---KSKYRIALTGTPIEN----KVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDK 248 (500)
T ss_dssp ---CEEEEEEECSSCSTT----CHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCH
T ss_pred ---ccCcEEEEecCCCCC----CHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccccc
Confidence 237889999999862 2222221111 122222222221100 00
Q ss_pred HHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHH
Q 000174 505 ELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAAN 584 (1931)
Q Consensus 505 ~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~ 584 (1931)
.+...++...+..+.+........+.+ .+..... ...... ....
T Consensus 249 ~~~~~lp~~~~~~v~~~l~~~~~~~y~-------~~~~~~~--------------------------~~~~~~--~~~~- 292 (500)
T 1z63_A 249 AIINDLPDKIETNVYCNLTPEQAAMYK-------AEVENLF--------------------------NNIDSV--TGIK- 292 (500)
T ss_dssp HHHTTSCSEEEEEEEECCCHHHHHHHH-------HHHHHHT--------------------------TTTTTC--CTHH-
T ss_pred chhhcCCCCeEEEEEcCCCHHHHHHHH-------HHHHHHH--------------------------HHHHhh--hccc-
Confidence 111122222222222221111100000 0000000 000000 0000
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhccccccccccccccccc
Q 000174 585 LIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGF 664 (1931)
Q Consensus 585 l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 664 (1931)
. ...+...+ ..++.++..
T Consensus 293 --~-~~~~~~~l-----------------------------------~~lr~~~~~------------------------ 310 (500)
T 1z63_A 293 --R-KGMILSTL-----------------------------------LKLKQIVDH------------------------ 310 (500)
T ss_dssp --H-HHHHHHHH-----------------------------------HHHHHHTTC------------------------
T ss_pred --c-hHHHHHHH-----------------------------------HHHHHHhCC------------------------
Confidence 0 00000000 001111100
Q ss_pred ccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC
Q 000174 665 VEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL 744 (1931)
Q Consensus 665 ~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 744 (1931)
..+... .......++|+..|.++|.+.. ..+.|+||||+++.+++.|.+.|...
T Consensus 311 -----p~l~~~--------------------~~~~~~~s~K~~~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~ 364 (500)
T 1z63_A 311 -----PALLKG--------------------GEQSVRRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE 364 (500)
T ss_dssp -----THHHHC--------------------SCCCSTTCHHHHHHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred -----HHHhcC--------------------ccchhhcchhHHHHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHh
Confidence 000000 0001245789999999998862 45789999999999999999999862
Q ss_pred CCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC-Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCC
Q 000174 745 PSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG-RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRAR 822 (1931)
Q Consensus 745 ~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G-~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~ 822 (1931)
.++.+..+|| +++..+|++++++|++| .++ +||||+++++|||+|.|++||+||+|||+..|+||+||++
T Consensus 365 ---~~~~~~~~~g-----~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~ 436 (500)
T 1z63_A 365 ---LNTEVPFLYG-----ELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVY 436 (500)
T ss_dssp ---HTCCCCEEET-----TSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTT
T ss_pred ---hCCCeEEEEC-----CCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHH
Confidence 2678899999 99999999999999988 565 8999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 000174 823 KPGSD 827 (1931)
Q Consensus 823 R~Gs~ 827 (1931)
|.|++
T Consensus 437 R~Gq~ 441 (500)
T 1z63_A 437 RIGQT 441 (500)
T ss_dssp TTTTT
T ss_pred HcCCC
Confidence 99987
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=9e-33 Score=359.96 Aligned_cols=329 Identities=19% Similarity=0.223 Sum_probs=225.1
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---C
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---G 376 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~ 376 (1931)
..+||+||.++++.+++ +++|++++||+|||++|++++...+.. .+.++||||||++|+.||.++++++. +
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-----CSSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 56899999999999988 899999999999999999998877653 23589999999999999999998873 3
Q ss_pred CcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcC
Q 000174 377 YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTS 456 (1931)
Q Consensus 377 l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~ 456 (1931)
..+..++|+..... +.....+|+|+||+.|.. .....+.++++|||||||++... .+..+ +...
T Consensus 186 ~~v~~~~~~~~~~~-------~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~~-~~~~i----l~~~- 249 (510)
T 2oca_A 186 AMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATGK-SISSI----ISGL- 249 (510)
T ss_dssp GGEEECGGGCCTTG-------GGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCHH-HHHHH----GGGC-
T ss_pred cceEEEecCCcccc-------ccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCcc-cHHHH----HHhc-
Confidence 57888888765322 134678999999998763 23456789999999999999763 33333 2222
Q ss_pred CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHh-hhCCCCceeEEEeccchhhhHHHHHHHH
Q 000174 457 KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELE-KHVPMPSEVVVEYDKAASLWSLHEQLKQ 535 (1931)
Q Consensus 457 ~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~-~~~~~p~e~~~~y~~~~~~~~l~~~i~~ 535 (1931)
...+++|+|||||.+... .+..+...++..+......+.+. .++.......+....... ..
T Consensus 250 -~~~~~~l~lSATp~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~----- 311 (510)
T 2oca_A 250 -NNCMFKFGLSGSLRDGKA---------NIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDE---FT----- 311 (510)
T ss_dssp -TTCCEEEEEESCGGGCSS---------CHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHH---HH-----
T ss_pred -ccCcEEEEEEeCCCCCcc---------cHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChH---Hh-----
Confidence 134789999999964221 11233344554443332211111 111111111111110000 00
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 000174 536 MEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTAL 615 (1931)
Q Consensus 536 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l 615 (1931)
.. ... ..+
T Consensus 312 ---------------------------------------------------~~-------~~~-~~~------------- 319 (510)
T 2oca_A 312 ---------------------------------------------------TK-------LKG-KTY------------- 319 (510)
T ss_dssp ---------------------------------------------------HH-------HTT-CCH-------------
T ss_pred ---------------------------------------------------cc-------ccc-cch-------------
Confidence 00 000 000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhh
Q 000174 616 QNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGA 695 (1931)
Q Consensus 616 ~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~ 695 (1931)
...+ ..+.
T Consensus 320 --------------~~~~-~~~~--------------------------------------------------------- 327 (510)
T 2oca_A 320 --------------QEEI-KIIT--------------------------------------------------------- 327 (510)
T ss_dssp --------------HHHH-HHHH---------------------------------------------------------
T ss_pred --------------HHHH-HHHh---------------------------------------------------------
Confidence 0000 0000
Q ss_pred cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHH
Q 000174 696 AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAK 775 (1931)
Q Consensus 696 ~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~ 775 (1931)
....|...+.+++.........++|||++ +..+..|++.|.+ .+.++..+|| +++..+|++++++
T Consensus 328 -----~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~----~~~~v~~~~g-----~~~~~~r~~i~~~ 392 (510)
T 2oca_A 328 -----GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN----EYDKVYYVSG-----EVDTETRNIMKTL 392 (510)
T ss_dssp -----TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT----TCSSEEEESS-----STTHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH----cCCCeEEEEC-----CCCHHHHHHHHHH
Confidence 00123334445554443334566777777 8888889999988 3458999999 9999999999999
Q ss_pred hhcCCceEEEEe-cccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 776 FRDGRVTLLVAT-SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 776 Fr~G~~~vLVaT-dVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++|+++||||| +++++|||+|+|++||+||+|+++..|+||+||+||.|+.
T Consensus 393 f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 393 AENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGS 445 (510)
T ss_dssp HHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCC
T ss_pred HhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCC
Confidence 999999999999 9999999999999999999999999999999999998865
No 37
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5.2e-33 Score=382.95 Aligned_cols=412 Identities=17% Similarity=0.186 Sum_probs=239.3
Q ss_pred CCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 302 EQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
.+|+|||.+++.+++. .++|++++||+|||+++++++.+++.. +...++|||||+ .|+.||.+++.++++++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~----g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS----GAAERVLIIVPE-TLQHQWLVEMLRRFNLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT----SSCCCEEEECCT-TTHHHHHHHHHHHSCCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh----CCCCeEEEEeCH-HHHHHHHHHHHHHhCCC
Confidence 6899999999999887 479999999999999999998877652 445579999999 99999999999999999
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeCCCcccCCCcH----HHHHHHHHh
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDECHHAVKKHPY----SLVMSEFYH 453 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEaH~~~~~~~~----~~im~~~~~ 453 (1931)
+.+++|+.... ....+...+...+|+|+|++.|...... ..+...+|++||||||||+.+.+.. ...+..+..
T Consensus 227 v~v~~~~~~~~--~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 227 FALFDDERYAE--AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CEECCHHHHHH--HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred EEEEccchhhh--hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 98887754321 1112223345789999999999743221 2345668999999999999864322 334444432
Q ss_pred hcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHH
Q 000174 454 TTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQL 533 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i 533 (1931)
..+++|+|||||...+.. + +..+-.+++...+. ....+....
T Consensus 305 -----~~~~~L~LTATPi~n~~~----e----l~sll~~L~p~~~~-------------------------~~~~f~~~~ 346 (968)
T 3dmq_A 305 -----HVPGVLLLTATPEQLGME----S----HFARLRLLDPNRFH-------------------------DFAQFVEEQ 346 (968)
T ss_dssp -----TCSSEEESCSSCSSSCSS----C----THHHHHHHCTTTCS-------------------------STHHHHHHH
T ss_pred -----cCCcEEEEEcCCccCCHH----H----HHHHHHhcCccccC-------------------------CHHHHHHHH
Confidence 237799999999863321 1 11121222211000 000011000
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000174 534 KQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLT 613 (1931)
Q Consensus 534 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~ 613 (1931)
... ..+........... ....... ..+...........++.
T Consensus 347 ~~~-~~i~~~~~~l~~~~---------------------~~~~~~~-----------------~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 347 KNY-CPVADAVAMLLAGN---------------------KLSNDEL-----------------NMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp HHH-HHHHHHHHTTTTSC---------------------CCCGGGT-----------------TSSTTTTCTTCSSTTGG
T ss_pred HhH-HHHHHHHHHHhccC---------------------CCCHHHH-----------------HHHHHHhcchhhHHHHh
Confidence 000 00000000000000 0000000 00000000000000000
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC--------
Q 000174 614 ALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG-------- 685 (1931)
Q Consensus 614 ~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~-------- 685 (1931)
....... . ........+..+.+ ........+.........+....+... .+..
T Consensus 388 ~~~~~~~---~-~~~~~~~~i~~lld--------------~~g~~~~l~r~~r~~i~~~p~r~~~~~-~l~~~~~~~~~~ 448 (968)
T 3dmq_A 388 AANSDSE---D-AQSARQELVSMLMD--------------RHGTSRVLFRNTRNGVKGFPKRELHTI-KLPLPTQYQTAI 448 (968)
T ss_dssp GTCCCSS---C-STTTHHHHHHHHGG--------------GCTTTTTEECCCTTTCCCCCCCCCCEE-EECCCHHHHHHH
T ss_pred cccchhh---h-hHHHHHHHHHHHHH--------------hhCcchhhhhhhhhhhcccChhheEee-ecCCCHHHHHHH
Confidence 0000000 0 00000000000000 000000000000000000000000000 0000
Q ss_pred ---------------------CCchhhhhhh-cccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhc
Q 000174 686 ---------------------GEHVDVIIGA-AVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAE 743 (1931)
Q Consensus 686 ---------------------~e~~~~~i~~-~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 743 (1931)
.+.....+.. .......++|...|.++|.. ..+.++||||+++.+++.|++.|..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~ 525 (968)
T 3dmq_A 449 KVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLRE 525 (968)
T ss_dssp HHHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHT
T ss_pred HHHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 0000000000 11233567899999999987 3578999999999999999999985
Q ss_pred CCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC--ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccC
Q 000174 744 LPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR--VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA 821 (1931)
Q Consensus 744 ~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~--~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa 821 (1931)
. .++++..+|| +|++.+|++++++|++|+ ++|||||+++++|||+|+|++||+||+|||+..|+||+||+
T Consensus 526 ~---~g~~~~~lhG-----~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 526 R---EGIRAAVFHE-----GMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRL 597 (968)
T ss_dssp T---TCCCEEEECT-----TSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTT
T ss_pred H---cCCcEEEEeC-----CCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcc
Confidence 2 4789999999 999999999999999998 99999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q 000174 822 RKPGSD 827 (1931)
Q Consensus 822 ~R~Gs~ 827 (1931)
+|.|+.
T Consensus 598 ~R~Gq~ 603 (968)
T 3dmq_A 598 DRIGQA 603 (968)
T ss_dssp SCSSSC
T ss_pred ccCCCC
Confidence 999987
No 38
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-32 Score=367.57 Aligned_cols=395 Identities=17% Similarity=0.205 Sum_probs=243.4
Q ss_pred CCCCcHHHHHHHHHHh----c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 301 EEQARPYQLDVLEQAK----K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l----~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..+|+|||.+++.+++ . +++||+++||+|||++++.++..++... ...+++||||| ..|+.||.++|.+++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~---~~~~~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR---RQNGPHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH---SCCSCEEEECC-TTTHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc---CCCCCEEEEEC-chHHHHHHHHHHHHC
Confidence 3589999999999876 3 8899999999999999999887766432 34566999999 688999999999988
Q ss_pred -CCcEEEEeCCCcccccchH-H-------HHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 376 -GYVVGHYCGEMGQDFWDAQ-R-------WQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 376 -~l~v~~~~G~~~~~~~~~~-~-------w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
++++.+++|.......... . ........+|+|+||+.+...... +....|++|||||||++.+... .
T Consensus 310 p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~s--~ 385 (800)
T 3mwy_W 310 PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAES--S 385 (800)
T ss_dssp TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSSS--H
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCchh--H
Confidence 7888888887542110000 0 001234678999999999865432 4455899999999999986432 1
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHH---------------------------HHHHHHhcCCeEEE
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIK---------------------------ICNLESKLDSVVCT 499 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~---------------------------l~~Le~~l~~~i~t 499 (1931)
..+.+. ....+++|+|||||.+.+ ..++... +..|...+...+..
T Consensus 386 ~~~~l~----~l~~~~rl~LTgTPiqN~----l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lR 457 (800)
T 3mwy_W 386 LYESLN----SFKVANRMLITGTPLQNN----IKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILR 457 (800)
T ss_dssp HHHHHT----TSEEEEEEEECSCCCSSC----SHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEE
T ss_pred HHHHHH----HhhhccEEEeeCCcCCCC----HHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhh
Confidence 112111 123477899999998632 2222111 12222222222221
Q ss_pred ecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccc
Q 000174 500 IKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTES 579 (1931)
Q Consensus 500 ~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~ 579 (1931)
. ...++...++...+.++.+........+...+.. . . +........
T Consensus 458 R-~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~---~--------~----------------------~~~l~~~~~ 503 (800)
T 3mwy_W 458 R-LKKDVEKSLPSKTERILRVELSDVQTEYYKNILT---K--------N----------------------YSALTAGAK 503 (800)
T ss_dssp C-CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHH---H--------C----------------------CC-------
T ss_pred h-hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHH---H--------H----------------------HHHHhhccc
Confidence 1 1122222233333444444333221111111100 0 0 000000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccc
Q 000174 580 DGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVD 659 (1931)
Q Consensus 580 ~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~ 659 (1931)
.....+.. .+..+...|.+..+. ... .. ..
T Consensus 504 ~~~~~~l~-------~l~~Lrk~~~hp~l~----------------~~~-~~----~~---------------------- 533 (800)
T 3mwy_W 504 GGHFSLLN-------IMNELKKASNHPYLF----------------DNA-EE----RV---------------------- 533 (800)
T ss_dssp ---CTHHH-------HHHHHHHHHHCGGGS----------------SSH-HH----HH----------------------
T ss_pred cchhhHHH-------HHHHHHHHhcChhhh----------------cch-HH----HH----------------------
Confidence 00000000 111111111110000 000 00 00
Q ss_pred cccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHH
Q 000174 660 SENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPK 739 (1931)
Q Consensus 660 ~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~ 739 (1931)
......... ......... ...+.|+..|.++|..+ ...+.|+|||++.+.+++.|..
T Consensus 534 ---------~~~~~~~~~----------~~~~~~~~l---~~~s~K~~~L~~lL~~~-~~~g~kvLIFsq~~~~ld~L~~ 590 (800)
T 3mwy_W 534 ---------LQKFGDGKM----------TRENVLRGL---IMSSGKMVLLDQLLTRL-KKDGHRVLIFSQMVRMLDILGD 590 (800)
T ss_dssp ---------CCCC----C----------CSHHHHHHH---HHTCHHHHHHHHHHHHH-TTTTCCEEEEESCHHHHHHHHH
T ss_pred ---------HHhcccccc----------cHHHHHHHh---hhcChHHHHHHHHHHHH-hhCCCeEEEEechHHHHHHHHH
Confidence 000000000 000000000 12478999999999987 4567899999999999999999
Q ss_pred HHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHH
Q 000174 740 VFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT---LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQ 816 (1931)
Q Consensus 740 ~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~---vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQ 816 (1931)
.|.. .++++..++| +++..+|++++++|+++..+ +|++|+++++|||++.|++||+||+|||+..++|
T Consensus 591 ~L~~----~g~~~~~i~G-----~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Q 661 (800)
T 3mwy_W 591 YLSI----KGINFQRLDG-----TVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQ 661 (800)
T ss_dssp HHHH----HTCCCEEEST-----TSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHH
T ss_pred HHHh----CCCCEEEEeC-----CCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHH
Confidence 9987 6899999999 99999999999999986654 9999999999999999999999999999999999
Q ss_pred hhccCCCCCCc
Q 000174 817 SRGRARKPGSD 827 (1931)
Q Consensus 817 r~GRa~R~Gs~ 827 (1931)
|+||++|.|++
T Consensus 662 a~gR~~RiGQ~ 672 (800)
T 3mwy_W 662 AMARAHRIGQK 672 (800)
T ss_dssp HHTTTSCSSCC
T ss_pred HHHHHHhcCCC
Confidence 99999999987
No 39
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-31 Score=368.55 Aligned_cols=358 Identities=20% Similarity=0.193 Sum_probs=233.5
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
++|+++|.++++.+.+ +++|+++|||||||++|.+++...+. .+.++||++||++|+.||+++++..++ .++
T Consensus 85 f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vg 157 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEFG-DVG 157 (1010)
T ss_dssp SCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHHS-CEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHhC-CEE
Confidence 4599999999999988 89999999999999999998887664 247899999999999999999999888 899
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~ 460 (1931)
.++|+.... ...+|+|+||++|.+++.++...+.++++|||||||++.+. .+...+..++...+ ..
T Consensus 158 lltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~-~rg~~~e~il~~l~--~~ 223 (1010)
T 2xgj_A 158 LMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILLP--DK 223 (1010)
T ss_dssp EECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHSC--TT
T ss_pred EEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc-chhHHHHHHHHhcC--CC
Confidence 999986542 35789999999999999888888999999999999999874 44555555555543 34
Q ss_pred cEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHH
Q 000174 461 PSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAV 540 (1931)
Q Consensus 461 p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~ 540 (1931)
+++++||||+.+ ..+....+ .......+..... ...+.|....+........
T Consensus 224 ~~il~LSATi~n------~~e~a~~l---~~~~~~~~~vi~~-----~~rp~pl~~~~~~~~~~~~-------------- 275 (1010)
T 2xgj_A 224 VRYVFLSATIPN------AMEFAEWI---CKIHSQPCHIVYT-----NFRPTPLQHYLFPAHGDGI-------------- 275 (1010)
T ss_dssp CEEEEEECCCTT------HHHHHHHH---HHHHTSCEEEEEE-----CCCSSCEEEEEEETTSSCC--------------
T ss_pred CeEEEEcCCCCC------HHHHHHHH---HhhcCCCeEEEec-----CCCcccceEEEEecCCcce--------------
Confidence 899999999764 12222222 2222222211100 1112232222221110000
Q ss_pred HHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhh
Q 000174 541 EEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDER 620 (1931)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~ 620 (1931)
+.............+... ...+......
T Consensus 276 ------------------------------~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~--------------- 303 (1010)
T 2xgj_A 276 ------------------------------YLVVDEKSTFREENFQKA-------MASISNQIGD--------------- 303 (1010)
T ss_dssp ------------------------------EEEECTTCCBCHHHHHHH-------HHTCC--------------------
T ss_pred ------------------------------eeeeccccccchHHHHHH-------HHHHhhhhcc---------------
Confidence 000000000000000000 0000000000
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCC
Q 000174 621 ANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADG 700 (1931)
Q Consensus 621 ~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~ 700 (1931)
... . ....+... .... + ....+
T Consensus 304 -----------~~~----~----~~~~g~~~-------------------~~~k-----------~---------~~~~~ 325 (1010)
T 2xgj_A 304 -----------DPN----S----TDSRGKKG-------------------QTYK-----------G---------GSAKG 325 (1010)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------ccc----c----cccccccc-------------------cccc-----------c---------ccccc
Confidence 000 0 00000000 0000 0 00000
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCC--------------------------------
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLS-------------------------------- 748 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~-------------------------------- 748 (1931)
....++..+++.+... ...++||||+++..++.++..|....-..
T Consensus 326 ~~~~~l~~l~~~l~~~---~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~ 402 (1010)
T 2xgj_A 326 DAKGDIYKIVKMIWKK---KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHIL 402 (1010)
T ss_dssp ---CHHHHHHHHHHHH---TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHH
Confidence 0023445566666543 34589999999999999999987631100
Q ss_pred ---CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cCC----CCCHHHHHHh
Q 000174 749 ---FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FDL----AKTVLAYIQS 817 (1931)
Q Consensus 749 ---~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD~----p~s~~~yiQr 817 (1931)
...+..+|| +|++.+|+.+++.|++|.++|||||+++++|||+|++++||+ ||. |+++.+|+||
T Consensus 403 ~~l~~gI~~~Hg-----gl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr 477 (1010)
T 2xgj_A 403 PLLRRGIGIHHS-----GLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQM 477 (1010)
T ss_dssp HHHHHTEEEEST-----TSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHH
T ss_pred HHHhCCeeEECC-----CCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHh
Confidence 012788999 999999999999999999999999999999999999999999 999 9999999999
Q ss_pred hccCCCCCC
Q 000174 818 RGRARKPGS 826 (1931)
Q Consensus 818 ~GRa~R~Gs 826 (1931)
+|||||.|.
T Consensus 478 ~GRAGR~G~ 486 (1010)
T 2xgj_A 478 SGRAGRRGL 486 (1010)
T ss_dssp HTTBCCTTT
T ss_pred hhhcccCCC
Confidence 999999996
No 40
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.4e-31 Score=350.39 Aligned_cols=400 Identities=15% Similarity=0.150 Sum_probs=243.5
Q ss_pred CCCcHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhc-CCCcEEEEEeCChhHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQ-NKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l~~~~~~-~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..|+|||.+++.++.. .++|++++||+|||++++.++..++...... +...++|||||+ .|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 5799999999999752 5689999999999999999988776532111 123569999996 899999999
Q ss_pred HHHHcC--CcEEEEeCCCcccccchH--HHHhh---cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCc
Q 000174 371 IREQTG--YVVGHYCGEMGQDFWDAQ--RWQRE---FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHP 443 (1931)
Q Consensus 371 l~~~~~--l~v~~~~G~~~~~~~~~~--~w~~~---~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~ 443 (1931)
+.++++ +.+..++|+.... +... .|... ....+|+|+||+.+.... ..+....|++||+||||++.+...
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDE-IDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHH-HHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHHcCCCeeEEEEeCCCHHH-HHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChhh
Confidence 999875 5566666654221 1111 11111 124789999999998543 345567899999999999987532
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHH--------------------------------------
Q 000174 444 YSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIK-------------------------------------- 485 (1931)
Q Consensus 444 ~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~-------------------------------------- 485 (1931)
...+.+... ..+++++|||||+..+ ..++...
T Consensus 210 --~~~~al~~l----~~~~rl~LTgTPiqN~----l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 210 --QTYLALNSM----NAQRRVLISGTPIQND----LLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp --HHHHHHHHH----CCSEEEEECSSCSGGG----GGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred --HHHHHHHhc----ccCcEEEEecCcccCC----HHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 222222211 2368999999998633 1111111
Q ss_pred ----HHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Q 000174 486 ----ICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDA 561 (1931)
Q Consensus 486 ----l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 561 (1931)
+..|...+...+.. .....+...++...+.++.+........+.+.+.. .....
T Consensus 280 ~~~~~~~L~~~l~~~~lR-R~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~-------~~~~~-------------- 337 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIR-RTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLK-------QAKPV-------------- 337 (644)
T ss_dssp HHHHHHHHHHHHHHHEEC-CCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHH-------HHCGG--------------
T ss_pred HHHHHHHHHHHHHHHHHH-hhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHH-------HHHHH--------------
Confidence 11122222211111 11223334444444555554443322222211110 00000
Q ss_pred hhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHh
Q 000174 562 GAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLL 641 (1931)
Q Consensus 562 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l 641 (1931)
...... . ..... ...+..+.+.|.+.... .....
T Consensus 338 ---------~~~~~g-~--~~~~~-------l~~l~~Lrk~c~hp~l~------------------------~~~~~--- 371 (644)
T 1z3i_X 338 ---------ESLQTG-K--ISVSS-------LSSITSLKKLCNHPALI------------------------YEKCL--- 371 (644)
T ss_dssp ---------GSSCTT-C--CCHHH-------HHHHHHHHHHHHCTHHH------------------------HHHHH---
T ss_pred ---------HHHhcC-c--cchhH-------HHHHHHHHHHhCCHHHH------------------------HHHHh---
Confidence 000000 0 00000 01111122222211100 00000
Q ss_pred hhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCC
Q 000174 642 QCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTED 721 (1931)
Q Consensus 642 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~ 721 (1931)
.+.. ... .....+ +. . .+ ........+.|+..|..+|.......+
T Consensus 372 -----~~~~----------~~~---~~~~~~-----~~-~-~~----------~~~~~~~~s~K~~~l~~ll~~~~~~~~ 416 (644)
T 1z3i_X 372 -----TGEE----------GFD---GALDLF-----PQ-N-YS----------TKAVEPQLSGKMLVLDYILAMTRTTTS 416 (644)
T ss_dssp -----HTCT----------TCT---TGGGTS-----CS-S-CC----------SSSCCGGGSHHHHHHHHHHHHHHHHCC
T ss_pred -----cccc----------hhh---hHHhhc-----cc-c-cc----------ccccCcccChHHHHHHHHHHHHhhcCC
Confidence 0000 000 000000 00 0 00 000012347899888888877644457
Q ss_pred ceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce---EEEEecccccCCCCCC
Q 000174 722 FRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT---LLVATSVAEEGLDIRQ 798 (1931)
Q Consensus 722 ~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~---vLVaTdVaeeGlDip~ 798 (1931)
.|+|||++++.+++.|..+|.. .++.+..+|| +++..+|++++++|++|+.. +||+|+++++|||++.
T Consensus 417 ~k~lIFs~~~~~~~~l~~~l~~----~g~~~~~l~G-----~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 417 DKVVLVSNYTQTLDLFEKLCRN----RRYLYVRLDG-----TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH----HTCCEEEECS-----SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred CEEEEEEccHHHHHHHHHHHHH----CCCCEEEEeC-----CCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 8999999999999999999987 6789999999 99999999999999998764 8999999999999999
Q ss_pred CCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 799 CNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 799 ~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
|++||+||+|||+..|+|++||++|.|++
T Consensus 488 a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~ 516 (644)
T 1z3i_X 488 ANRLVMFDPDWNPANDEQAMARVWRDGQK 516 (644)
T ss_dssp EEEEEECSCCSSHHHHHHHHTTSSSTTCC
T ss_pred CCEEEEECCCCCccHHHHHHHhhhhcCCC
Confidence 99999999999999999999999999987
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-31 Score=359.15 Aligned_cols=339 Identities=19% Similarity=0.221 Sum_probs=239.8
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
++.+.+..+...+.+...++..|+++|.++++. +.+ +|+|+++|||||||++|.+++.+.+.. .+.++++++|
T Consensus 9 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~il~i~P 83 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-----NGGKAIYVTP 83 (715)
T ss_dssp BGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-----SCSEEEEECS
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-----CCCeEEEEeC
Confidence 445555444455778889999999999999999 445 899999999999999999998776542 2468999999
Q ss_pred ChhHHHHHHHHHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc
Q 000174 360 KVPLVYQQAEVIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH 437 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~ 437 (1931)
+++|+.|+++.++.+ ++++++.++|+..... . ....++|+|+||++|...+.++...+.++++||+||||+
T Consensus 84 ~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~----~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 84 LRALTNEKYLTFKDWELIGFKVAMTSGDYDTDD----A---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCC----G---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred cHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCch----h---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 999999999999643 4789999999765432 1 124789999999999999888766789999999999999
Q ss_pred ccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeE
Q 000174 438 AVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVV 517 (1931)
Q Consensus 438 ~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~ 517 (1931)
+.+. .+...+..+....+ .+++++||||+.+ ...+...++..++... .-+.|....
T Consensus 157 l~~~-~~~~~l~~i~~~~~---~~~ii~lSATl~n-------------~~~~~~~l~~~~~~~~-------~r~~~l~~~ 212 (715)
T 2va8_A 157 LNDP-ERGPVVESVTIRAK---RRNLLALSATISN-------------YKQIAKWLGAEPVATN-------WRPVPLIEG 212 (715)
T ss_dssp GGCT-TTHHHHHHHHHHHH---TSEEEEEESCCTT-------------HHHHHHHHTCEEEECC-------CCSSCEEEE
T ss_pred cCCc-ccchHHHHHHHhcc---cCcEEEEcCCCCC-------------HHHHHHHhCCCccCCC-------CCCCCceEE
Confidence 8753 45555555554443 4899999999863 1234445555443321 112222221
Q ss_pred EEeccchhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHH
Q 000174 518 VEYDKAASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALG 597 (1931)
Q Consensus 518 ~~y~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~ 597 (1931)
+.+..... ....+ .+
T Consensus 213 ~~~~~~~~-------------------------~~~~~--------------~~-------------------------- 227 (715)
T 2va8_A 213 VIYPERKK-------------------------KEYNV--------------IF-------------------------- 227 (715)
T ss_dssp EEEECSST-------------------------TEEEE--------------EE--------------------------
T ss_pred EEecCCcc-------------------------cceee--------------ec--------------------------
Confidence 21111000 00000 00
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccc
Q 000174 598 ELGQWCAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGEL 677 (1931)
Q Consensus 598 ~lg~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l 677 (1931)
.+ .....
T Consensus 228 ------------------------------------------------------------~~------------~~~~~- 234 (715)
T 2va8_A 228 ------------------------------------------------------------KD------------NTTKK- 234 (715)
T ss_dssp ------------------------------------------------------------TT------------SCEEE-
T ss_pred ------------------------------------------------------------Cc------------chhhh-
Confidence 00 00000
Q ss_pred cccccccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCC---C------
Q 000174 678 LDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSL---S------ 748 (1931)
Q Consensus 678 ~~~~~~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l---~------ 748 (1931)
+. ....+...+.+.+ ..+.++||||+++..+..++..|.+.... .
T Consensus 235 -------------------~~--~~~~~~~~~~~~~-----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~ 288 (715)
T 2va8_A 235 -------------------VH--GDDAIIAYTLDSL-----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSE 288 (715)
T ss_dssp -------------------EE--SSSHHHHHHHHHH-----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHH
T ss_pred -------------------cc--cchHHHHHHHHHH-----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 00 0123333444443 24679999999999999999999863110 0
Q ss_pred -----------------------CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE-
Q 000174 749 -----------------------FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR- 804 (1931)
Q Consensus 749 -----------------------~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~- 804 (1931)
...+..+|| +++..+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 289 ~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~-----~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 289 ILKQLDDIEEGGSDEKELLKSLISKGVAYHHA-----GLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHTTTEEEECT-----TSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC
T ss_pred HHHHHHHhhhccccccHHHHHHHhcCEEEECC-----CCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC
Confidence 124788999 999999999999999999999999999999999999999999
Q ss_pred ---cC-------CCCCHHHHHHhhccCCCCC
Q 000174 805 ---FD-------LAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 805 ---fD-------~p~s~~~yiQr~GRa~R~G 825 (1931)
|| .|.+..+|+||+|||||.|
T Consensus 364 ~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 364 IYRFNKKIAGYYDEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp C--------------CHHHHHHHHTTBCCTT
T ss_pred CeeccccCCCCCCcCCHHHHHHHhhhcCCCC
Confidence 99 8999999999999999988
No 42
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.98 E-value=2.2e-31 Score=360.07 Aligned_cols=323 Identities=19% Similarity=0.219 Sum_probs=235.8
Q ss_pred cchhhhhcCCCCCCcHHHHHHHHH-Hhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHH
Q 000174 291 KKSEAKEKMPEEQARPYQLDVLEQ-AKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQA 368 (1931)
Q Consensus 291 ~~~~~l~~~~~~~~~~~Q~eai~~-~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~ 368 (1931)
...+.+...++..|+++|.++++. +.. +|+|+++|||||||++|.+++.+.+... +.+++|++|+++|+.|++
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P~raLa~q~~ 85 (720)
T 2zj8_A 11 RIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVPLKALAEEKF 85 (720)
T ss_dssp HHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECSSGGGHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcCcHHHHHHHH
Confidence 344778888999999999999998 555 8999999999999999999887665431 468999999999999999
Q ss_pred HHHHHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHH
Q 000174 369 EVIREQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 369 ~~l~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
+.++.+ ++++++.++|+...+. . ....++|+|+||++|...+.+....+.++++||+||||++... .+..
T Consensus 86 ~~~~~l~~~g~~v~~~~G~~~~~~----~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~-~r~~ 157 (720)
T 2zj8_A 86 QEFQDWEKIGLRVAMATGDYDSKD----E---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR-DRGA 157 (720)
T ss_dssp HHTGGGGGGTCCEEEECSCSSCCC----G---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHH
T ss_pred HHHHHHHhcCCEEEEecCCCCccc----c---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCC-cccH
Confidence 999753 4889999999765432 1 1357899999999999988887777899999999999999763 4445
Q ss_pred HHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhh
Q 000174 447 VMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASL 526 (1931)
Q Consensus 447 im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 526 (1931)
.+..++...+. .+++++||||+.+ ...+...++...+... ..+.|....+.+.....
T Consensus 158 ~~~~ll~~l~~--~~~ii~lSATl~n-------------~~~~~~~l~~~~~~~~-------~rp~~l~~~~~~~~~~~- 214 (720)
T 2zj8_A 158 TLEVILAHMLG--KAQIIGLSATIGN-------------PEELAEWLNAELIVSD-------WRPVKLRRGVFYQGFVT- 214 (720)
T ss_dssp HHHHHHHHHBT--TBEEEEEECCCSC-------------HHHHHHHTTEEEEECC-------CCSSEEEEEEEETTEEE-
T ss_pred HHHHHHHHhhc--CCeEEEEcCCcCC-------------HHHHHHHhCCcccCCC-------CCCCcceEEEEeCCeee-
Confidence 55555554442 5899999999864 1234444553332211 11111111111100000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 000174 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK 606 (1931)
Q Consensus 527 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~ 606 (1931)
+ .
T Consensus 215 ----------------------------~------------------~-------------------------------- 216 (720)
T 2zj8_A 215 ----------------------------W------------------E-------------------------------- 216 (720)
T ss_dssp ----------------------------E------------------T--------------------------------
T ss_pred ----------------------------c------------------c--------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 607 VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 607 ~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
+...
T Consensus 217 -------------------------------------------------------------------~~~~--------- 220 (720)
T 2zj8_A 217 -------------------------------------------------------------------DGSI--------- 220 (720)
T ss_dssp -------------------------------------------------------------------TSCE---------
T ss_pred -------------------------------------------------------------------ccch---------
Confidence 0000
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC-C----------------C--
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP-S----------------L-- 747 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~-~----------------l-- 747 (1931)
.....+...+.+.+. .+.++||||+++..+..++..|.+.. . +
T Consensus 221 -------------~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~ 282 (720)
T 2zj8_A 221 -------------DRFSSWEELVYDAIR-----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEE 282 (720)
T ss_dssp -------------EECSSTTHHHHHHHH-----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCS
T ss_pred -------------hhhhHHHHHHHHHHh-----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhc
Confidence 000112223333332 35789999999999999998886420 0 0
Q ss_pred ----------CCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cC----CCC
Q 000174 748 ----------SFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FD----LAK 809 (1931)
Q Consensus 748 ----------~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD----~p~ 809 (1931)
-...+..+|| +++..+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.
T Consensus 283 ~~~~~~l~~~~~~~v~~~h~-----~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~ 357 (720)
T 2zj8_A 283 NPTNEKLAKAIRGGVAFHHA-----GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERI 357 (720)
T ss_dssp CHHHHHHHHHHTTTEEEECT-----TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEEC
T ss_pred ccchHHHHHHHhcCeeeecC-----CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccC
Confidence 0124888999 999999999999999999999999999999999999999998 88 699
Q ss_pred CHHHHHHhhccCCCCCC
Q 000174 810 TVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 810 s~~~yiQr~GRa~R~Gs 826 (1931)
++.+|+||+|||||.|.
T Consensus 358 s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 358 PIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp CHHHHHHHHTTBCCTTT
T ss_pred CHHHHHHHHhhcCCCCC
Confidence 99999999999999883
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.98 E-value=1.1e-31 Score=371.18 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=127.9
Q ss_pred CCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--
Q 000174 299 MPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-- 375 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-- 375 (1931)
.++ +|+++|.++++.+++ +|+|++++||||||++|+.++.+.+. .+.++|||+||++|+.|++++++.+.
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~------~~~~~Lil~PtreLa~Q~~~~l~~l~~~ 147 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR------KGKKSALVFPTVTLVKQTLERLQKLADE 147 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHTTSCT
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh------cCCeEEEEechHHHHHHHHHHHHHhhCC
Confidence 454 799999999999998 89999999999999988888776653 35679999999999999999999953
Q ss_pred CCcEEEEeCCCcccccchHHHHhhcCC-ccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC----------CcH
Q 000174 376 GYVVGHYCGEMGQDFWDAQRWQREFDT-KQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK----------HPY 444 (1931)
Q Consensus 376 ~l~v~~~~G~~~~~~~~~~~w~~~~~~-~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~----------~~~ 444 (1931)
++++..++|+.....+ ...|.....+ ++|+|+||++|.+++.. +.+.++++|||||||++... .+|
T Consensus 148 ~i~v~~l~Gg~~~~er-~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf 224 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEK-EKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGI 224 (1104)
T ss_dssp TSCEEEECTTCCTTHH-HHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSC
T ss_pred CCeEEEEeCCCCHHHH-HHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCC
Confidence 6799999999875432 3344555454 99999999999988875 67889999999999987652 233
Q ss_pred HHH-HHHHHhhcC---------CCCCcEEEEEeecCC
Q 000174 445 SLV-MSEFYHTTS---------KEKRPSVFGMTASPV 471 (1931)
Q Consensus 445 ~~i-m~~~~~~~~---------~~~~p~iLgLTATP~ 471 (1931)
... +..++...+ .....++++|||||.
T Consensus 225 ~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~ 261 (1104)
T 4ddu_A 225 PEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAK 261 (1104)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSC
T ss_pred CHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCC
Confidence 333 444444332 113479999999964
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=3.9e-31 Score=356.70 Aligned_cols=323 Identities=19% Similarity=0.227 Sum_probs=230.2
Q ss_pred hhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 293 SEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 293 ~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+.++..++.+|+++|.++++.+++ +|+|+++|||||||++|.+++.+.+.. +.++++++|+++|+.|+++.+
T Consensus 15 ~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~------~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 15 VGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK------GGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh------CCcEEEEeCcHHHHHHHHHHH
Confidence 3677788999999999999999887 999999999999999999998876542 457999999999999999999
Q ss_pred HHH--cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHH
Q 000174 372 REQ--TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMS 449 (1931)
Q Consensus 372 ~~~--~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~ 449 (1931)
+.+ +|++++.++|+..... +....++|+|+||++|...+.++...+.++++||+||||++.+. .+...+.
T Consensus 89 ~~~~~~g~~v~~~~G~~~~~~-------~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~-~r~~~~~ 160 (702)
T 2p6r_A 89 KKWEKIGLRIGISTGDYESRD-------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE-KRGATLE 160 (702)
T ss_dssp TTTTTTTCCEEEECSSCBCCS-------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT-TTHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCcch-------hhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC-CcccHHH
Confidence 653 3789999999865432 12357899999999999999887666899999999999998763 2333333
Q ss_pred HHHhhcC-CCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhH
Q 000174 450 EFYHTTS-KEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWS 528 (1931)
Q Consensus 450 ~~~~~~~-~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~ 528 (1931)
.+..... ....+++++||||+.+ ...+...++..++... ..+.|....+.+.....
T Consensus 161 ~ll~~l~~~~~~~~ii~lSATl~n-------------~~~~~~~l~~~~~~~~-------~r~~~l~~~~~~~~~~~--- 217 (702)
T 2p6r_A 161 ILVTKMRRMNKALRVIGLSATAPN-------------VTEIAEWLDADYYVSD-------WRPVPLVEGVLCEGTLE--- 217 (702)
T ss_dssp HHHHHHHHHCTTCEEEEEECCCTT-------------HHHHHHHTTCEEEECC-------CCSSCEEEEEECSSEEE---
T ss_pred HHHHHHHhcCcCceEEEECCCcCC-------------HHHHHHHhCCCcccCC-------CCCccceEEEeeCCeee---
Confidence 3322221 1234899999999863 2234445555443321 11222221111110000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000174 529 LHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVA 608 (1931)
Q Consensus 529 l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~ 608 (1931)
+ ...
T Consensus 218 --------------------------~------------------~~~-------------------------------- 221 (702)
T 2p6r_A 218 --------------------------L------------------FDG-------------------------------- 221 (702)
T ss_dssp --------------------------E------------------EET--------------------------------
T ss_pred --------------------------c------------------cCc--------------------------------
Confidence 0 000
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCc
Q 000174 609 QSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEH 688 (1931)
Q Consensus 609 ~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~ 688 (1931)
.....
T Consensus 222 ----------------------------------------------------------------~~~~~----------- 226 (702)
T 2p6r_A 222 ----------------------------------------------------------------AFSTS----------- 226 (702)
T ss_dssp ----------------------------------------------------------------TEEEE-----------
T ss_pred ----------------------------------------------------------------chhhh-----------
Confidence 00000
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC-CC-C--C----------------
Q 000174 689 VDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL-PS-L--S---------------- 748 (1931)
Q Consensus 689 ~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~-~~-l--~---------------- 748 (1931)
..-.+...+.+.+. .+.++||||+++..+..++..|... +. + .
T Consensus 227 ------------~~~~~~~~~~~~~~-----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~ 289 (702)
T 2p6r_A 227 ------------RRVKFEELVEECVA-----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSR 289 (702)
T ss_dssp ------------EECCHHHHHHHHHH-----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHH
T ss_pred ------------hhhhHHHHHHHHHh-----cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccH
Confidence 00002223333332 3578999999999999999888642 00 0 0
Q ss_pred ------CceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEE----cC---CCCCHHHHH
Q 000174 749 ------FVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIR----FD---LAKTVLAYI 815 (1931)
Q Consensus 749 ------~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~----fD---~p~s~~~yi 815 (1931)
...+..+|| +++..+|..+++.|++|+++|||||+++++|||+|++++||+ || .|.+..+|+
T Consensus 290 ~l~~~~~~~v~~~h~-----~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 290 KLAECVRKGAAFHHA-----GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHTTCCEECT-----TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred HHHHHHhcCeEEecC-----CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 134788999 999999999999999999999999999999999999999999 87 799999999
Q ss_pred HhhccCCCCC
Q 000174 816 QSRGRARKPG 825 (1931)
Q Consensus 816 Qr~GRa~R~G 825 (1931)
||+|||||.|
T Consensus 365 Qr~GRaGR~g 374 (702)
T 2p6r_A 365 QMAGRAGRPG 374 (702)
T ss_dssp HHHTTBSCTT
T ss_pred HHhhhcCCCC
Confidence 9999999998
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.2e-31 Score=356.31 Aligned_cols=310 Identities=19% Similarity=0.225 Sum_probs=216.0
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc-------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK-------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~-------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
.-++.+++ +||++|.++++.+++ .|+|++++||||||++|++++...+.. +.+++||+||++|+.|
T Consensus 360 ~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~------g~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 360 EFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA------GFQTAFMVPTSILAIQ 432 (780)
T ss_dssp HHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH------TSCEEEECSCHHHHHH
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHH
Confidence 34566787 999999999999876 389999999999999999999877653 4679999999999999
Q ss_pred HHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 367 QAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 367 ~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
|++.+++++ ++++..++|+..... +...|..... .++|+|+||+.|.+ .+.+.++++||+||||++...
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~-r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~- 505 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSE-KEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK- 505 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHH-HHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH-
Confidence 999999976 689999999876433 2334555444 59999999998853 367889999999999998432
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEecc
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDK 522 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~ 522 (1931)
. +. ........+++++|||||.. ....+...-+..+..... + .....|... .+
T Consensus 506 ---q--r~--~l~~~~~~~~vL~mSATp~p------------~tl~~~~~g~~~~s~i~~---~-p~~r~~i~~--~~-- 558 (780)
T 1gm5_A 506 ---Q--RE--ALMNKGKMVDTLVMSATPIP------------RSMALAFYGDLDVTVIDE---M-PPGRKEVQT--ML-- 558 (780)
T ss_dssp -------C--CCCSSSSCCCEEEEESSCCC------------HHHHHHHTCCSSCEEECC---C-CSSCCCCEE--CC--
T ss_pred ---H--HH--HHHHhCCCCCEEEEeCCCCH------------HHHHHHHhCCcceeeeec---c-CCCCcceEE--EE--
Confidence 1 11 11112235899999999974 000010000000000000 0 000000000 00
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHH
Q 000174 523 AASLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQW 602 (1931)
Q Consensus 523 ~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~ 602 (1931)
T Consensus 559 -------------------------------------------------------------------------------- 558 (780)
T 1gm5_A 559 -------------------------------------------------------------------------------- 558 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccc
Q 000174 603 CAYKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHV 682 (1931)
Q Consensus 603 ~a~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~ 682 (1931)
T Consensus 559 -------------------------------------------------------------------------------- 558 (780)
T 1gm5_A 559 -------------------------------------------------------------------------------- 558 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeeh--------hHHHHHHHHHhc-CCCCCCceeE
Q 000174 683 VSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERV--------VAALVLPKVFAE-LPSLSFVKSA 753 (1931)
Q Consensus 683 ~s~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r--------~ta~~L~~~L~~-~~~l~~~~~~ 753 (1931)
....+...+++.+.+. ...+.+++|||+.+ ..+..+++.|.. . ++++++.
T Consensus 559 ------------------~~~~~~~~l~~~i~~~-l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~--~~~~~v~ 617 (780)
T 1gm5_A 559 ------------------VPMDRVNEVYEFVRQE-VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV--FPEFKLG 617 (780)
T ss_dssp ------------------CCSSTHHHHHHHHHHH-TTTSCCBCCBCCCC--------CHHHHHHHSGGGSC--C---CBC
T ss_pred ------------------eccchHHHHHHHHHHH-HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh--cCCCcEE
Confidence 0001112222333222 12356778888754 457778888876 3 2468899
Q ss_pred EEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCCCC-CHHHHHHhhccCCCCCCcEEE
Q 000174 754 SLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAK-TVLAYIQSRGRARKPGSDYIL 830 (1931)
Q Consensus 754 ~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~p~-s~~~yiQr~GRa~R~Gs~~iv 830 (1931)
.+|| +|++.+|++++++|++|+++|||||+|+++|||+|+|++||+||+|. +...|.||+||+||.|..+..
T Consensus 618 ~lHG-----~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ 690 (780)
T 1gm5_A 618 LMHG-----RLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 690 (780)
T ss_dssp CCCS-----SSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred EEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEE
Confidence 9999 99999999999999999999999999999999999999999999996 789999999999998866333
No 46
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.97 E-value=4e-31 Score=350.12 Aligned_cols=352 Identities=16% Similarity=0.228 Sum_probs=204.4
Q ss_pred CCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhh---hcCCCcEEEEEeCChhHHHHHH-HHH
Q 000174 302 EQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQ---RQNKKMLAVFLVPKVPLVYQQA-EVI 371 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~---~~~~~~~vL~LvPT~~Lv~Q~~-~~l 371 (1931)
..||+||.++++.+++ +++|++++||||||++++.++..++.... .....+++||||||++|+.||. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 5899999999999874 56899999999999998888776655210 0014678999999999999999 777
Q ss_pred HHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc----ccccccceeEEEEeCCCcccCC--CcHH
Q 000174 372 REQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH----SIIKMEAINLLILDECHHAVKK--HPYS 445 (1931)
Q Consensus 372 ~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~----~~l~l~~i~lLV~DEaH~~~~~--~~~~ 445 (1931)
+.+ +..+..+.++.. ..+.+|+|+||++|.+.+.. ..+....+++||+||||++... ..|.
T Consensus 257 ~~~-~~~~~~~~~~~~------------~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 257 TPF-GDARHKIEGGKV------------VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp TTT-CSSEEECCC--C------------CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CH
T ss_pred Hhc-chhhhhhhccCC------------CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHH
Confidence 754 445555443321 24679999999999887642 2356678999999999999863 3455
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEE-Eeccch
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVV-EYDKAA 524 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~-~y~~~~ 524 (1931)
.++..+- .+++|+|||||..... ..+...++..++.+...+.+......|..... ......
T Consensus 324 ~il~~~~-------~~~~l~lTATP~~~~~-----------~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 385 (590)
T 3h1t_A 324 EILEYFE-------PAFQIGMTATPLREDN-----------RDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDA 385 (590)
T ss_dssp HHHHHST-------TSEEEEEESSCSCTTT-----------HHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC
T ss_pred HHHHhCC-------cceEEEeccccccccc-----------hhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeec
Confidence 5554321 2679999999986432 13445566666666555555544444433221 111100
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 000174 525 SLWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCA 604 (1931)
Q Consensus 525 ~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a 604 (1931)
....... ...... ...+....+....
T Consensus 386 ~~~~~~~------~~~~~~------------------------------------------~~~~~~~~~~~~~------ 411 (590)
T 3h1t_A 386 AGWRPSK------GDVDRF------------------------------------------GREIPDGEYQTKD------ 411 (590)
T ss_dssp -----------------------------------------------------------------------CCS------
T ss_pred ccccccc------cccccc------------------------------------------ccccccccCCHHH------
Confidence 0000000 000000 0000000000000
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCcccccccccccccccc
Q 000174 605 YKVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVS 684 (1931)
Q Consensus 605 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s 684 (1931)
+...+.. ..
T Consensus 412 ------------------------~~~~~~~--~~--------------------------------------------- 420 (590)
T 3h1t_A 412 ------------------------FERVIAL--KA--------------------------------------------- 420 (590)
T ss_dssp ------------------------HHHHHHH--HH---------------------------------------------
T ss_pred ------------------------hhhHhcC--hH---------------------------------------------
Confidence 0000000 00
Q ss_pred CCCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCC----CCCCceeEEEEccCC
Q 000174 685 GGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELP----SLSFVKSASLIGHNN 760 (1931)
Q Consensus 685 ~~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~----~l~~~~~~~l~G~~~ 760 (1931)
........|.+.+... ....|+||||+++.+|+.+++.|.+.. ....-.+..+||
T Consensus 421 ----------------r~~~i~~~l~~~l~~~--~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g--- 479 (590)
T 3h1t_A 421 ----------------RTDAFAKHLTDFMKRT--DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTS--- 479 (590)
T ss_dssp ----------------THHHHHHHHHHHHHHH--CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSS---
T ss_pred ----------------HHHHHHHHHHHHHHhc--CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeC---
Confidence 0000111233333332 346799999999999999999997631 001123677888
Q ss_pred CccccHHHHHHHHHHhhcCCce---EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCC----cEEEEEe
Q 000174 761 SQEMRTFQMQETIAKFRDGRVT---LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGS----DYILMIE 833 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr~G~~~---vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs----~~ivlv~ 833 (1931)
.++. +|++++++|++|+.+ |||||+++++|||+|+|++||+|++|+++..|+||+||++|.+. .+.+++.
T Consensus 480 --~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 480 --EEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp --TTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred --CChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 6653 799999999998876 89999999999999999999999999999999999999999653 4445544
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=8.6e-30 Score=349.76 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=125.7
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-CCcE
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT-GYVV 379 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~-~l~v 379 (1931)
++|+++|.++++.+++ +++|++++||+|||++|++++...+. .+.++||++|+++|+.||++++++.+ ++++
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v 111 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETFDDVNI 111 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC--CCE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeE
Confidence 5699999999999998 89999999999999999998877654 35689999999999999999999976 7899
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
+.++|+.... ...+|+|+||++|.+++.++...+.++++|||||||++.+. .+...+..++...+ .
T Consensus 112 ~~l~G~~~~~-----------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~-~~g~~~e~ii~~l~--~ 177 (997)
T 4a4z_A 112 GLITGDVQIN-----------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQ-DRGVVWEEVIIMLP--Q 177 (997)
T ss_dssp EEECSSCEEC-----------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTT-CTTCCHHHHHHHSC--T
T ss_pred EEEeCCCccC-----------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccccc-chHHHHHHHHHhcc--c
Confidence 9999986532 45799999999999999888888899999999999998763 33333444444333 2
Q ss_pred CcEEEEEeecCCC
Q 000174 460 RPSVFGMTASPVN 472 (1931)
Q Consensus 460 ~p~iLgLTATP~~ 472 (1931)
.+++++|||||.+
T Consensus 178 ~v~iIlLSAT~~n 190 (997)
T 4a4z_A 178 HVKFILLSATVPN 190 (997)
T ss_dssp TCEEEEEECCCTT
T ss_pred CCCEEEEcCCCCC
Confidence 4899999999864
No 48
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=2.7e-30 Score=334.62 Aligned_cols=367 Identities=17% Similarity=0.146 Sum_probs=233.1
Q ss_pred cCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH---H
Q 000174 298 KMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE---Q 374 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~---~ 374 (1931)
.+|+ .|+++|..+++.+++++ |+.++||+|||++|++|+..... .+..++||+||++||.|.++.+.. +
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~-Iaea~TGeGKTlaf~LP~~l~aL------~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN-IAEMKTGEGKTLTSTLPVYLNAL------TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS-EEECCTTSCHHHHHHHHHHHHHT------TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC-EEEccCCcHHHHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4788 99999999999999966 99999999999999999863221 235699999999999998887776 4
Q ss_pred cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhcc------cccccceeEEEEeCCCcccCCC-----
Q 000174 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHS------IIKMEAINLLILDECHHAVKKH----- 442 (1931)
Q Consensus 375 ~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~------~l~l~~i~lLV~DEaH~~~~~~----- 442 (1931)
+|+++++++|++.... ++...+++|+|+||++| +|.|... .+.+..+.++|+||||+++-+.
T Consensus 151 lgl~v~~i~gg~~~~~------r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDE------KREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp TTCCEEECCTTSCHHH------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred cCCeEEEEeCCCCHHH------HHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 6999999999975421 12224789999999999 6665432 3567899999999999998333
Q ss_pred ----------cHHHHHHHHHhhcCC-------CCCcEEE-----------------EEeecCCC-CCCC-----------
Q 000174 443 ----------PYSLVMSEFYHTTSK-------EKRPSVF-----------------GMTASPVN-LKGV----------- 476 (1931)
Q Consensus 443 ----------~~~~im~~~~~~~~~-------~~~p~iL-----------------gLTATP~~-~~~~----------- 476 (1931)
.+...+..+....+. ....+++ ++|||-.. ...+
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 256666777776642 1234555 67777210 0000
Q ss_pred --------------------------CchhHHHHHHHHHHHh-cCC---eEEEecchHHHhhhCCCCceeEEEeccchhh
Q 000174 477 --------------------------SSQVDCAIKICNLESK-LDS---VVCTIKDRKELEKHVPMPSEVVVEYDKAASL 526 (1931)
Q Consensus 477 --------------------------~~~~~~~~~l~~Le~~-l~~---~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~ 526 (1931)
.-+..+...+..-+.. +.. ...++.....+..+-...- ...--. .
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~G--mTGTa~--t- 379 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAG--MTGTAK--T- 379 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEE--EESCCG--G-
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhcc--CCcccc--h-
Confidence 0000000000000000 011 2233333222222211100 000000 0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 000174 527 WSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYK 606 (1931)
Q Consensus 527 ~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~ 606 (1931)
. ..++..+|++.-
T Consensus 380 -e-----------------------------------~~e~~~iY~l~v------------------------------- 392 (844)
T 1tf5_A 380 -E-----------------------------------EEEFRNIYNMQV------------------------------- 392 (844)
T ss_dssp -G-----------------------------------HHHHHHHHCCCE-------------------------------
T ss_pred -h-----------------------------------HHHHHHHhCCce-------------------------------
Confidence 0 000011111000
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCC
Q 000174 607 VAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGG 686 (1931)
Q Consensus 607 ~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~ 686 (1931)
..++. .. ........+
T Consensus 393 ------------------------------------v~IPt------------------n~---p~~r~d~~d------- 408 (844)
T 1tf5_A 393 ------------------------------------VTIPT------------------NR---PVVRDDRPD------- 408 (844)
T ss_dssp ------------------------------------EECCC------------------SS---CCCCEECCC-------
T ss_pred ------------------------------------EEecC------------------CC---CcccccCCc-------
Confidence 00000 00 000000000
Q ss_pred CchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccH
Q 000174 687 EHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRT 766 (1931)
Q Consensus 687 e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~ 766 (1931)
+.......|...|++.+... ...+.++||||+++..++.|+..|.. .++++..+|| ++.+
T Consensus 409 ----------~v~~~~~~K~~al~~~i~~~-~~~~~pvLVft~s~~~se~Ls~~L~~----~gi~~~vLhg-----~~~~ 468 (844)
T 1tf5_A 409 ----------LIYRTMEGKFKAVAEDVAQR-YMTGQPVLVGTVAVETSELISKLLKN----KGIPHQVLNA-----KNHE 468 (844)
T ss_dssp ----------EEESSHHHHHHHHHHHHHHH-HHHTCCEEEEESCHHHHHHHHHHHHT----TTCCCEEECS-----SCHH
T ss_pred ----------EEEeCHHHHHHHHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHH----CCCCEEEeeC-----CccH
Confidence 00012235788888877653 12355799999999999999999998 7899999999 8888
Q ss_pred HHHHHHHHHhhcCCceEEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE--EEEecCC
Q 000174 767 FQMQETIAKFRDGRVTLLVATSVAEEGLDIR--------QCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI--LMIERGN 836 (1931)
Q Consensus 767 ~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip--------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i--vlv~~~~ 836 (1931)
++|..+.++|+.| .|||||+||+||+||+ ++.+||+||+|.+...|+||+|||||.|..+. +++..++
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887666777766 6999999999999999 78899999999999999999999999998843 5555444
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.1e-29 Score=353.91 Aligned_cols=299 Identities=19% Similarity=0.215 Sum_probs=216.2
Q ss_pred CCCCCCcHHHHHHHHHHhc-----c--CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 299 MPEEQARPYQLDVLEQAKK-----K--NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 299 ~~~~~~~~~Q~eai~~~l~-----~--n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
.+ .++||+|.++++.+++ + ++|++++||+|||++|++++...+. .+++++|||||++|+.||++.+
T Consensus 600 f~-~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~------~g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 600 FP-FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD------NHKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp CC-SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH------hCCeEEEEechHHHHHHHHHHH
Confidence 44 4579999999999876 2 7999999999999999988766543 3468999999999999999999
Q ss_pred HHHc---CCcEEEEeCCCcccccchHHHHhhcC-CccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHH
Q 000174 372 REQT---GYVVGHYCGEMGQDFWDAQRWQREFD-TKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLV 447 (1931)
Q Consensus 372 ~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~-~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~i 447 (1931)
++.+ ++++..++|..+... ....|..... .++|+|+||+.|. ..+.+.++++|||||||++.. .....
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~-~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g~--~~~~~ 744 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKE-QTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFGV--RHKER 744 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHH-HHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSCH--HHHHH
T ss_pred HHHhhcCCCeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcCh--HHHHH
Confidence 9876 578888888765432 2333444434 5999999998774 346789999999999999743 33334
Q ss_pred HHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCcee--EEEeccchh
Q 000174 448 MSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEV--VVEYDKAAS 525 (1931)
Q Consensus 448 m~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~--~~~y~~~~~ 525 (1931)
++.+. ..+++|+|||||... .+......+. ....+ ...|... +..+..
T Consensus 745 l~~l~------~~~~vl~lSATp~p~-----------~l~~~~~~~~-~~~~i---------~~~~~~r~~i~~~~~--- 794 (1151)
T 2eyq_A 745 IKAMR------ANVDILTLTATPIPR-----------TLNMAMSGMR-DLSII---------ATPPARRLAVKTFVR--- 794 (1151)
T ss_dssp HHHHH------TTSEEEEEESSCCCH-----------HHHHHHTTTS-EEEEC---------CCCCCBCBCEEEEEE---
T ss_pred HHHhc------CCCCEEEEcCCCChh-----------hHHHHHhcCC-CceEE---------ecCCCCccccEEEEe---
Confidence 43332 237899999999740 1111111010 00000 0000000 000000
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 000174 526 LWSLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAY 605 (1931)
Q Consensus 526 ~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~ 605 (1931)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1151)
T 2eyq_A 795 -------------------------------------------------------------------------------- 794 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccC
Q 000174 606 KVAQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSG 685 (1931)
Q Consensus 606 ~~~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~ 685 (1931)
T Consensus 795 -------------------------------------------------------------------------------- 794 (1151)
T 2eyq_A 795 -------------------------------------------------------------------------------- 794 (1151)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCchhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCcccc
Q 000174 686 GEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMR 765 (1931)
Q Consensus 686 ~e~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~ 765 (1931)
. ..+......++... ..+.+++|||+++.++..+++.|+.. ++++++..+|| +|+
T Consensus 795 ---------------~-~~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~--~p~~~v~~lhg-----~~~ 849 (1151)
T 2eyq_A 795 ---------------E-YDSMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHG-----QMR 849 (1151)
T ss_dssp ---------------E-CCHHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCS-----SCC
T ss_pred ---------------c-CCHHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHh--CCCCeEEEEeC-----CCC
Confidence 0 00000011111221 23578999999999999999999874 24788999999 999
Q ss_pred HHHHHHHHHHhhcCCceEEEEecccccCCCCCCCCEEEEcCC-CCCHHHHHHhhccCCCCCCc
Q 000174 766 TFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDL-AKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 766 ~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~lVI~fD~-p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+.+|++++++|++|+++|||||+++++|||+|+|++||.++. ++++.+|+||+||+||.|..
T Consensus 850 ~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~ 912 (1151)
T 2eyq_A 850 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 912 (1151)
T ss_dssp HHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc
Confidence 999999999999999999999999999999999999999998 68999999999999999866
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=4.3e-30 Score=356.25 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=120.2
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
+..|+. | ++|.++++.++. +|+|++++||||||+ |++|+...+.. .+.++|||+||++|+.|++++++.++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-----~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-----KGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-----TSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-----cCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 447888 9 999999999999 899999999999998 77776554432 35679999999999999999999875
Q ss_pred ---CC----cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHH
Q 000174 376 ---GY----VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVM 448 (1931)
Q Consensus 376 ---~l----~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im 448 (1931)
++ ++..++|+..... ...+...+..++|+|+||++|.+++.+ +.++++|||||||++.+. ...+
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~--~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~---~~~~ 194 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKRE--KENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA---SKNV 194 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHH--HHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS---THHH
T ss_pred hhcCCCccceEEEEeCCCChhh--HHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc---cccH
Confidence 56 8999999876532 122223333499999999999987765 669999999999999872 2333
Q ss_pred HHHHhhcCC---------CCCcEEEEEeecCCC
Q 000174 449 SEFYHTTSK---------EKRPSVFGMTASPVN 472 (1931)
Q Consensus 449 ~~~~~~~~~---------~~~p~iLgLTATP~~ 472 (1931)
+.++....- ...++++++|||+..
T Consensus 195 ~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~ 227 (1054)
T 1gku_B 195 DKLLHLLGFHYDLKTKSWVGEARGCLMVSTATA 227 (1054)
T ss_dssp HHHHHHTTEEEETTTTEEEECCSSEEEECCCCS
T ss_pred HHHHHHhCcchhhhhhhcccCCceEEEEecCCC
Confidence 333332210 123668889998654
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.96 E-value=3.2e-29 Score=323.22 Aligned_cols=126 Identities=21% Similarity=0.111 Sum_probs=104.0
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH---cCCc
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ---TGYV 378 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~---~~l~ 378 (1931)
..|+++|..+++.+++++ |+.++||+|||++|++|+..... .+..++||+||++||.|.++.+..+ ++++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~-Iaem~TGsGKTlaf~LP~l~~~l------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~ 145 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC-IAEMRTGEGKTLTATLPAYLNAL------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLT 145 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE-EEECCTTSCHHHHHHHHHHHHHT------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCChHHHhhcccccCCe-eeeecCCchHHHHHHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCe
Confidence 589999999999999865 99999999999999999864322 2356999999999999988887764 5899
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------ccccceeEEEEeCCCcccC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~~i~lLV~DEaH~~~~ 440 (1931)
+++++|++... .++...+++|+|+||++| +|.|..+. +.+..+.++|+||||+++.
T Consensus 146 v~~i~GG~~~~------~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 146 VGINLPGMPAP------AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp EEECCTTCCHH------HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred EEEEeCCCCHH------HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 99999997632 122234789999999999 78887542 5678999999999999984
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.96 E-value=3.8e-30 Score=327.88 Aligned_cols=277 Identities=19% Similarity=0.189 Sum_probs=195.9
Q ss_pred CCCCCcHHHHHHHHHHhc-cCE-EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 300 PEEQARPYQLDVLEQAKK-KNT-IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~-Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
|+.+++|+|+ +++.+++ +++ |++++||||||++|++++...+.. .+.++|||+||++|+.|+++++. ++
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-----~~~~~lvl~Ptr~La~Q~~~~l~---g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-----RRLRTLILAPTRVVAAEMEEALR---GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT---TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-----cCCcEEEECCCHHHHHHHHHHhc---Cc
Confidence 4678999985 7898887 565 999999999999999988755442 24679999999999999999885 44
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK 457 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~ 457 (1931)
.+..-.+... .....+..|.++|++.|.+.+.+. ..+.++++|||||||++ + ........+......
T Consensus 72 ~v~~~~~~~~---------~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~--~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 72 PIRYQTPAVK---------SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D--PCSVAARGYISTRVE 138 (451)
T ss_dssp CEEECCTTCS---------CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-S--HHHHHHHHHHHHHHH
T ss_pred eeeeeecccc---------ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-C--cchHHHHHHHHHhhc
Confidence 4432222111 012245679999999998887654 56889999999999988 2 333322333322212
Q ss_pred CCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCCceeEEEeccchhhhHHHHHHHHHH
Q 000174 458 EKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQLKQME 537 (1931)
Q Consensus 458 ~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~~l~~~i~~l~ 537 (1931)
...+++++|||||..... .. ....+...... ...
T Consensus 139 ~~~~~~i~~SAT~~~~~~---------------~~----------------~~~~~~~~~~~-~~~-------------- 172 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTD---------------PF----------------PQSNSPIEDIE-REI-------------- 172 (451)
T ss_dssp TTSCEEEEECSSCTTCCC---------------SS----------------CCCSSCEEEEE-CCC--------------
T ss_pred CCCceEEEEccCCCccch---------------hh----------------hcCCCceEecC-ccC--------------
Confidence 235899999999863110 00 00001000000 000
Q ss_pred HHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 000174 538 VAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQN 617 (1931)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~ 617 (1931)
...
T Consensus 173 ------------------------------------p~~----------------------------------------- 175 (451)
T 2jlq_A 173 ------------------------------------PER----------------------------------------- 175 (451)
T ss_dssp ------------------------------------CSS-----------------------------------------
T ss_pred ------------------------------------Cch-----------------------------------------
Confidence 000
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcc
Q 000174 618 DERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAV 697 (1931)
Q Consensus 618 ~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~ 697 (1931)
T Consensus 176 -------------------------------------------------------------------------------- 175 (451)
T 2jlq_A 176 -------------------------------------------------------------------------------- 175 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 698 ADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 698 ~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
.. . .+.+.+.+ ...++||||+++..++.+++.|+. .++.+..+|| .+. ++++++|+
T Consensus 176 --~~-~----~~~~~l~~----~~~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~-----~~~----~~~~~~f~ 231 (451)
T 2jlq_A 176 --SW-N----TGFDWITD----YQGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSR-----KTF----DTEYPKTK 231 (451)
T ss_dssp --CC-S----SSCHHHHH----CCSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECT-----TTH----HHHGGGGG
T ss_pred --hh-H----HHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCH-----HHH----HHHHHhhc
Confidence 00 0 00111222 135899999999999999999998 5788999999 543 57999999
Q ss_pred cCCceEEEEecccccCCCCCCCCEEEEcC--------------------CCCCHHHHHHhhccCCCCCC
Q 000174 778 DGRVTLLVATSVAEEGLDIRQCNVVIRFD--------------------LAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 778 ~G~~~vLVaTdVaeeGlDip~~~lVI~fD--------------------~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+|+.+|||||+++++|||+|+ ++||+|| .|.+..+|+||+|||||.|.
T Consensus 232 ~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 232 LTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp SSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred cCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 999999999999999999999 9999999 99999999999999999986
No 53
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.96 E-value=1.6e-30 Score=280.12 Aligned_cols=143 Identities=34% Similarity=0.523 Sum_probs=127.5
Q ss_pred hhHHHHHHHcCCCcCCHHHHHHHhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHH
Q 000174 1590 VDFHALEDALKIKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNEN 1669 (1931)
Q Consensus 1590 ~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~ 1669 (1931)
.++..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||+.++|.|+.+|+.+|||++
T Consensus 26 ~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~--~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~ 103 (170)
T 3o2r_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKS 103 (170)
T ss_dssp -CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT--CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC--cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHH
Confidence 45899999999999999999999999999754 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccccCCceeEEee
Q 000174 1670 FARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWQV 1749 (1931)
Q Consensus 1670 La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDsg~~~~~v~~~ 1749 (1931)
||.+|.++||++||+.++++.. .+....+|+++|+|||+|||||+|+|++ .+++|
T Consensus 104 La~ia~~lgL~~~l~~~~~~~~-----------------------~~~~~~~~ilad~fEAliGAiylD~G~~--~a~~~ 158 (170)
T 3o2r_A 104 FAKIANSLNLGDFILMSVAEEN-----------------------NGGKEKPSILSDALEAIIGAIHLEAGFE--FAKTI 158 (170)
T ss_dssp HHHHHHHTTGGGTCBCCHHHHH-----------------------TTGGGCHHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHHcCcHHhhhcCcchhh-----------------------cCCCCcchHHHHHHHHHHHHHHHHCCHH--HHHHH
Confidence 9999999999999998776532 1234679999999999999999999965 56788
Q ss_pred eccCCCCCCC
Q 000174 1750 FQPLLDPMVT 1759 (1931)
Q Consensus 1750 ~~~~l~~~i~ 1759 (1931)
+.+++.|.++
T Consensus 159 i~~~~~~~~~ 168 (170)
T 3o2r_A 159 ALRLIEKNFP 168 (170)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHh
Confidence 8887777654
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=5.6e-28 Score=311.41 Aligned_cols=145 Identities=17% Similarity=0.110 Sum_probs=114.2
Q ss_pred cCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH---H
Q 000174 298 KMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE---Q 374 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~---~ 374 (1931)
.+|+ .|+++|..+++.+++++ |+.++||+|||++|++|+..... .+..|+||+||++|+.|.++.+.. +
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~-Iaem~TGeGKTLa~~LP~~l~aL------~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN-VAEMKTGEGKTLTCVLPAYLNAL------AGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE-EEECCTTSCHHHHTHHHHHHHHT------TTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC-EEEecCCCccHHHHHHHHHHHHH------hCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3566 99999999999999855 99999999999999999853222 134699999999999997777765 5
Q ss_pred cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhcc------cccccceeEEEEeCCCcccCC------
Q 000174 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHS------IIKMEAINLLILDECHHAVKK------ 441 (1931)
Q Consensus 375 ~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~------~l~l~~i~lLV~DEaH~~~~~------ 441 (1931)
+|++|++++|++.... ++...+++|+|+||++| +|.|... .+.+..++++|+||||+++.+
T Consensus 179 lGLsv~~i~gg~~~~~------r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 179 LGLQVGVILATMTPDE------RRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp TTCCEEECCTTCCHHH------HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred cCCeEEEEeCCCCHHH------HHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 6999999999876321 12224689999999999 7877654 366788999999999999843
Q ss_pred ---------CcHHHHHHHHHhhcC
Q 000174 442 ---------HPYSLVMSEFYHTTS 456 (1931)
Q Consensus 442 ---------~~~~~im~~~~~~~~ 456 (1931)
+.+...+..+....+
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSC
T ss_pred eecCCCCcchhHHHHHHHHHHhCc
Confidence 246666777777665
No 55
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=6.3e-29 Score=325.34 Aligned_cols=275 Identities=17% Similarity=0.160 Sum_probs=198.8
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
..++|+|+.+++.+++ +++|++++||||||++|++++.+.+.. .+.++|||+||++|+.|+.++++ ++.+.
T Consensus 170 ~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-----~~~~vLvl~PtreLa~Qi~~~l~---~~~v~ 241 (618)
T 2whx_A 170 RIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-----RRLRTLILAPTRVVAAEMEEALR---GLPIR 241 (618)
T ss_dssp CCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHTT---TSCEE
T ss_pred ccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEcChHHHHHHHHHHhc---CCcee
Confidence 6678887777888877 999999999999999999988766543 34679999999999999998886 44554
Q ss_pred EEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKR 460 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~ 460 (1931)
+.+..... ..-.+..+.++|.+.|...+... ..+.++++|||||||++ +..+...+..+....+. ..
T Consensus 242 -~~~~~l~~--------~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~--~~~~~~~~~~i~~~l~~-~~ 308 (618)
T 2whx_A 242 -YQTPAVKS--------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT--DPCSVAARGYISTRVEM-GE 308 (618)
T ss_dssp -ECCTTSSC--------CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC--SHHHHHHHHHHHHHHHH-TS
T ss_pred -Eeccccee--------ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC--CccHHHHHHHHHHHhcc-cC
Confidence 33321000 01134567889999988766554 45889999999999998 33565555555544321 34
Q ss_pred cEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCC-CCceeEEEeccchhhhHHHHHHHHHHHH
Q 000174 461 PSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVP-MPSEVVVEYDKAASLWSLHEQLKQMEVA 539 (1931)
Q Consensus 461 p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~-~p~e~~~~y~~~~~~~~l~~~i~~l~~~ 539 (1931)
+++++|||||..... .+.. .+....+.....
T Consensus 309 ~q~il~SAT~~~~~~--------------------------------~~~~~~~~~~~v~~~~~---------------- 340 (618)
T 2whx_A 309 AAAIFMTATPPGSTD--------------------------------PFPQSNSPIEDIEREIP---------------- 340 (618)
T ss_dssp CEEEEECSSCTTCCC--------------------------------SSCCCSSCEEEEECCCC----------------
T ss_pred ccEEEEECCCchhhh--------------------------------hhhccCCceeeecccCC----------------
Confidence 899999999864110 0000 011000000000
Q ss_pred HHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Q 000174 540 VEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDE 619 (1931)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~~~~~l~~l~~~~ 619 (1931)
T Consensus 341 -------------------------------------------------------------------------------- 340 (618)
T 2whx_A 341 -------------------------------------------------------------------------------- 340 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCCchhhhhhhcccC
Q 000174 620 RANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGEHVDVIIGAAVAD 699 (1931)
Q Consensus 620 ~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e~~~~~i~~~~~~ 699 (1931)
.
T Consensus 341 -----------------------------------------------------------~-------------------- 341 (618)
T 2whx_A 341 -----------------------------------------------------------E-------------------- 341 (618)
T ss_dssp -----------------------------------------------------------S--------------------
T ss_pred -----------------------------------------------------------H--------------------
Confidence 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
.+...+++.|.+ ...++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|
T Consensus 342 ----~~~~~ll~~l~~----~~~~~LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg-----~----~R~~~l~~F~~g 400 (618)
T 2whx_A 342 ----RSWNTGFDWITD----YQGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSR-----K----TFDTEYPKTKLT 400 (618)
T ss_dssp ----SCCSSSCHHHHH----CCSCEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----T----THHHHTTHHHHS
T ss_pred ----HHHHHHHHHHHh----CCCCEEEEECChhHHHHHHHHHHH----cCCcEEEECh-----H----HHHHHHHhhcCC
Confidence 000001112222 245899999999999999999998 5789999998 3 677899999999
Q ss_pred CceEEEEecccccCCCCCCCCEE--------------------EEcCCCCCHHHHHHhhccCCCCCC
Q 000174 780 RVTLLVATSVAEEGLDIRQCNVV--------------------IRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 780 ~~~vLVaTdVaeeGlDip~~~lV--------------------I~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
+.+|||||+++++|||+| +++| |+||.|.+..+|+||+|||||.|.
T Consensus 401 ~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 999999999999999998 9888 888899999999999999999964
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=2.8e-27 Score=337.99 Aligned_cols=165 Identities=18% Similarity=0.213 Sum_probs=124.6
Q ss_pred CCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-----cCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 300 PEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQR-----QNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~-----~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
++..++++|.++++.+++ +|+++++|||||||++|.++|.+.+.+... ...+.++|+|+|+++|+.|..+.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 688999999999999987 899999999999999999999877764321 1346789999999999999999998
Q ss_pred HHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCCCcH--H
Q 000174 373 EQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKKHPY--S 445 (1931)
Q Consensus 373 ~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~~~~--~ 445 (1931)
+.+ |++|+.++|+..... . ....++|+||||+++..++.++. -.+.++++|||||+|.+.++-+. .
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~---~----~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE 228 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCK---E----EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLE 228 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCC---T----TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCc---c----ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHH
Confidence 864 789999999876532 1 23578999999999865555432 24788999999999977553221 2
Q ss_pred HHHHHHHhhc-CCCCCcEEEEEeecCC
Q 000174 446 LVMSEFYHTT-SKEKRPSVFGMTASPV 471 (1931)
Q Consensus 446 ~im~~~~~~~-~~~~~p~iLgLTATP~ 471 (1931)
.++..+.... ......|++|||||..
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSATl~ 255 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSATLP 255 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEECSCT
T ss_pred HHHHHHHHHHHhCCCCCcEEEEecccC
Confidence 2222222111 1123479999999965
No 57
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=4.8e-28 Score=312.63 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=117.6
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
....++++|.++++.+.+ +++|+.++||||||.+|.+++.+ .+.++||++||++|+.|+++.+.+.++..
T Consensus 214 ~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---------~g~~vLVl~PTReLA~Qia~~l~~~~g~~ 284 (666)
T 3o8b_A 214 MRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---------QGYKVLVLNPSVAATLGFGAYMSKAHGID 284 (666)
T ss_dssp HHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHHHHHHSCC
T ss_pred ccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---------CCCeEEEEcchHHHHHHHHHHHHHHhCCC
Confidence 344567777777777766 78999999999999999988754 23479999999999999999999989999
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~ 458 (1931)
+....|+... ..+.+|+|+||++| +.+..+.+.++++|||||||.+ + ..+...+..+....+..
T Consensus 285 vg~~vG~~~~-----------~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~-~~~~~~l~~Il~~l~~~ 348 (666)
T 3o8b_A 285 PNIRTGVRTI-----------TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-D-STTILGIGTVLDQAETA 348 (666)
T ss_dssp CEEECSSCEE-----------CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-S-HHHHHHHHHHHHHTTTT
T ss_pred eeEEECcEec-----------cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-C-ccHHHHHHHHHHhhhhc
Confidence 9888887531 25789999999998 4566778889999999999665 3 26666666676666555
Q ss_pred CCcEEEEEeecCCC
Q 000174 459 KRPSVFGMTASPVN 472 (1931)
Q Consensus 459 ~~p~iLgLTATP~~ 472 (1931)
....+++|||||..
T Consensus 349 ~~~llil~SAT~~~ 362 (666)
T 3o8b_A 349 GARLVVLATATPPG 362 (666)
T ss_dssp TCSEEEEEESSCTT
T ss_pred CCceEEEECCCCCc
Confidence 55668889999863
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=2.4e-28 Score=321.51 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=86.5
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+++|||||+++++|||+| ++
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg-----~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNR-----K----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECS-----S----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeCh-----H----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 56899999999999999999998 4789999999 3 688899999999999999999999999999 99
Q ss_pred EEEE--------------------cCCCCCHHHHHHhhccCCCC-CCc
Q 000174 801 VVIR--------------------FDLAKTVLAYIQSRGRARKP-GSD 827 (1931)
Q Consensus 801 lVI~--------------------fD~p~s~~~yiQr~GRa~R~-Gs~ 827 (1931)
+||+ ||+|.++.+|+||+|||||. |+.
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 9998 77999999999999999998 555
No 59
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.95 E-value=4.6e-29 Score=281.86 Aligned_cols=146 Identities=23% Similarity=0.312 Sum_probs=122.7
Q ss_pred HHHHHHcCCC-cCCHHHHHHHhcCCCCCCC---------CCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 000174 1593 HALEDALKIK-FKDRGLLVEAITHASRPSS---------GVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRA 1662 (1931)
Q Consensus 1593 ~~le~~lgy~-F~~~~LL~~AlTH~S~~~~---------~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~ 1662 (1931)
..||++|||+ |+|+.||.+||||+||... ...+||||||||||||+++|++|||.+||++++|.||.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3589999999 9999999999999999643 24699999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHHcCchhhhccCCchhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhccc-cC
Q 000174 1663 AAVNNENFARVAVKHKLHVHLRHGSSALDRQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDS-GR 1741 (1931)
Q Consensus 1663 ~lv~n~~La~~a~~~gl~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylDs-g~ 1741 (1931)
.+|||.+||.+|.++||++||+++.+.... ......++++||+|||+|||||+|+ |.
T Consensus 166 ~lVsn~~La~iA~~lgL~~~l~~~~g~~~~----------------------~~~~~~~~ilAD~fEAlIGAIylD~~g~ 223 (246)
T 3rv1_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTR----------------------VVKDKMSKRYADCVQAYIGALVIDRFGT 223 (246)
T ss_dssp HHHSHHHHHHHHHHTTSHHHHCSSCC---------------------------------CHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCHHHHHHHHHHCCcHHHHhhcCCHhhh----------------------ccCcccccHHHHHHHHHHHHHhHcCCCC
Confidence 999999999999999999999965332110 0112468999999999999999999 88
Q ss_pred CceeEEeeeccCCCCCCCC
Q 000174 1742 DTSVVWQVFQPLLDPMVTP 1760 (1931)
Q Consensus 1742 ~~~~v~~~~~~~l~~~i~~ 1760 (1931)
++..+++|+.+++.|.++.
T Consensus 224 ~l~~v~~~l~~L~~p~l~e 242 (246)
T 3rv1_A 224 EFLDIKEWLEELSEKKLAK 242 (246)
T ss_dssp TTHHHHHHHHHHTHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987765
No 60
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=1.6e-26 Score=330.33 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=126.9
Q ss_pred hhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 294 EAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 294 ~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
+++...+|..++|+|.++++.++. +|+++++|||||||++|.++|.+.+.+ .++.++|+|+|+++||.|.++.+
T Consensus 917 e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~----~~~~kavyi~P~raLa~q~~~~~ 992 (1724)
T 4f92_B 917 ESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQ----SSEGRCVYITPMEALAEQVYMDW 992 (1724)
T ss_dssp HTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHH----CTTCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHh----CCCCEEEEEcChHHHHHHHHHHH
Confidence 556666789999999999999987 789999999999999999999887764 34567999999999999999998
Q ss_pred HHH----cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc--cccccceeEEEEeCCCcccCCCc--
Q 000174 372 REQ----TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS--IIKMEAINLLILDECHHAVKKHP-- 443 (1931)
Q Consensus 372 ~~~----~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~~~~~~-- 443 (1931)
++. ++++|+.++|+...+. +....++|+||||++|..++.+. ...+.++++||+||+|.+.+..+
T Consensus 993 ~~~f~~~~g~~V~~ltGd~~~~~-------~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~ 1065 (1724)
T 4f92_B 993 YEKFQDRLNKKVVLLTGETSTDL-------KLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPV 1065 (1724)
T ss_dssp HHHHTTTSCCCEEECCSCHHHHH-------HHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHH
T ss_pred HHHhchhcCCEEEEEECCCCcch-------hhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCcc
Confidence 764 3678999998754321 12356899999999997777653 23478999999999998876322
Q ss_pred HHHHHHHHHhhc-CCCCCcEEEEEeecCCC
Q 000174 444 YSLVMSEFYHTT-SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 444 ~~~im~~~~~~~-~~~~~p~iLgLTATP~~ 472 (1931)
+..++..+.... ......|+++||||..+
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N 1095 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSN 1095 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTT
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 122222221111 12235899999999753
No 61
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=4.9e-29 Score=316.08 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=76.7
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
+.++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+++|||||+++++|||+| ++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~----~~~~v~~lhg-----~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~ 242 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNR-----K----TFEREYPTIKQKKPDFILATDIAEMGANLC-VE 242 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCS-----S----SCC--------CCCSEEEESSSTTCCTTCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH----cCCCEEEecc-----h----hHHHHHhhhcCCCceEEEECChhheeeccC-ce
Confidence 46899999999999999999998 4789999999 2 467899999999999999999999999999 99
Q ss_pred EEEE-------------------cCCCCCHHHHHHhhccCCCCC
Q 000174 801 VVIR-------------------FDLAKTVLAYIQSRGRARKPG 825 (1931)
Q Consensus 801 lVI~-------------------fD~p~s~~~yiQr~GRa~R~G 825 (1931)
+||+ ||.|.++.+|+||+|||||.|
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC
Confidence 9996 999999999999999999983
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=1.4e-27 Score=302.27 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=83.9
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+++|||||+++++|||+| +.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~v~~lhg-----~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~ 236 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQK----AGKKVLYLNR-----K----TFESEYPKCKSEKWDFVITTDISEMGANFK-AD 236 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHH----TTCCEEEEST-----T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH----cCCeEEEeCC-----c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-Cc
Confidence 45899999999999999999998 4789999999 4 577899999999999999999999999999 54
Q ss_pred E-----------------EEEcCCCCCHHHHHHhhccCCCCCC
Q 000174 801 V-----------------VIRFDLAKTVLAYIQSRGRARKPGS 826 (1931)
Q Consensus 801 l-----------------VI~fD~p~s~~~yiQr~GRa~R~Gs 826 (1931)
. ||+||.|.++.+|+||+||+||.|.
T Consensus 237 ~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 237 RVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp EEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred EEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 4 6889999999999999999999874
No 63
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=7.5e-28 Score=307.15 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=86.1
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCCC
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..++||||+++..++.+++.|+. .++++..+|| . +|++++++|++|+.+|||||+++++|||+|+ +
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~----~g~~v~~lh~-----~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~ 255 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQR----AGKKVIQLNR-----K----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-S 255 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEEEST-----T----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-S
T ss_pred CCCEEEEeCChHHHHHHHHHHHh----cCCcEEecCH-----H----HHHHHHhhccCCCceEEEECChHHhCeecCC-C
Confidence 46899999999999999999998 5789999998 3 5677899999999999999999999999999 9
Q ss_pred EEEE--------------------cCCCCCHHHHHHhhccCCCCCC-c--EEEEEec
Q 000174 801 VVIR--------------------FDLAKTVLAYIQSRGRARKPGS-D--YILMIER 834 (1931)
Q Consensus 801 lVI~--------------------fD~p~s~~~yiQr~GRa~R~Gs-~--~ivlv~~ 834 (1931)
+||+ ||.|.++.+|+||+|||||.|. . .++++..
T Consensus 256 ~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 256 RVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp EEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred EEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 9999 8899999999999999999985 3 4444443
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=5.6e-27 Score=314.50 Aligned_cols=318 Identities=16% Similarity=0.143 Sum_probs=214.2
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+...+ ..|++.|++++..++. ++++++++||||||.+ +|+. ++......+.+.+++|++|+++|+.|+++
T Consensus 83 ~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~l-l~~~~~~~~~g~~ilvl~P~r~La~q~~~ 158 (773)
T 2xau_A 83 YVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQF-VLFDEMPHLENTQVACTQPRRVAAMSVAQ 158 (773)
T ss_dssp HHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHH-HHHHHCGGGGTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHH-HHHhccccCCCceEEecCchHHHHHHHHH
Confidence 335555555 6789999999999887 5699999999999993 3332 11111112224679999999999999999
Q ss_pred HHHHHcCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCc-ccCCCcHHHHH
Q 000174 370 VIREQTGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHH-AVKKHPYSLVM 448 (1931)
Q Consensus 370 ~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~-~~~~~~~~~im 448 (1931)
.+...++..++...|... ... .......+|+|+||++|.+.+... ..+.++++|||||||. ..+.......+
T Consensus 159 ~l~~~~~~~v~~~vG~~i-~~~-----~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l 231 (773)
T 2xau_A 159 RVAEEMDVKLGEEVGYSI-RFE-----NKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLL 231 (773)
T ss_dssp HHHHHTTCCBTTTEEEEE-TTE-----EECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred HHHHHhCCchhheeccee-ccc-----cccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHH
Confidence 988877765544333210 000 011247899999999999877654 4588999999999995 54432334445
Q ss_pred HHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcC-CeEEEecchHHHhhhCCCCceeEEEeccchhhh
Q 000174 449 SEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLD-SVVCTIKDRKELEKHVPMPSEVVVEYDKAASLW 527 (1931)
Q Consensus 449 ~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~-~~i~t~~~~~~l~~~~~~p~e~~~~y~~~~~~~ 527 (1931)
+.+.... ...++++||||+.. ..+...++ ..+...... ..|.+ +.|.....
T Consensus 232 ~~l~~~~---~~~~iIl~SAT~~~--------------~~l~~~~~~~~vi~v~gr-------~~pv~--~~~~~~~~-- 283 (773)
T 2xau_A 232 KQVVKRR---PDLKIIIMSATLDA--------------EKFQRYFNDAPLLAVPGR-------TYPVE--LYYTPEFQ-- 283 (773)
T ss_dssp HHHHHHC---TTCEEEEEESCSCC--------------HHHHHHTTSCCEEECCCC-------CCCEE--EECCSSCC--
T ss_pred HHHHHhC---CCceEEEEeccccH--------------HHHHHHhcCCCcccccCc-------ccceE--EEEecCCc--
Confidence 5554433 24789999999842 12222333 222221100 01111 11110000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccchhhHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000174 528 SLHEQLKQMEVAVEEAAQSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKV 607 (1931)
Q Consensus 528 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~~~~~~~l~~lg~~~a~~~ 607 (1931)
. +
T Consensus 284 ------------------------------------------------~---~--------------------------- 285 (773)
T 2xau_A 284 ------------------------------------------------R---D--------------------------- 285 (773)
T ss_dssp ------------------------------------------------S---C---------------------------
T ss_pred ------------------------------------------------h---h---------------------------
Confidence 0 0
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccCCccccccccccccccccCCC
Q 000174 608 AQSFLTALQNDERANYQLDVKFQESYLSKVVSLLQCELVEGAVSKKDAKVVDSENGFVEGGTNEIEEGELLDSHVVSGGE 687 (1931)
Q Consensus 608 ~~~~l~~l~~~~~~~~~~~~~~~~~yl~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~l~~~~~~s~~e 687 (1931)
T Consensus 286 -------------------------------------------------------------------------------- 285 (773)
T 2xau_A 286 -------------------------------------------------------------------------------- 285 (773)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhcccCCCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcC-------CCCCCceeEEEEccCC
Q 000174 688 HVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAEL-------PSLSFVKSASLIGHNN 760 (1931)
Q Consensus 688 ~~~~~i~~~~~~~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~-------~~l~~~~~~~l~G~~~ 760 (1931)
.....+..+.+++.. ....++||||+++..+..+++.|... ....++.+..+||
T Consensus 286 -------------~~~~~l~~l~~~~~~---~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg--- 346 (773)
T 2xau_A 286 -------------YLDSAIRTVLQIHAT---EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYG--- 346 (773)
T ss_dssp -------------HHHHHHHHHHHHHHH---SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECT---
T ss_pred -------------HHHHHHHHHHHHHHh---cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCC---
Confidence 000011112222221 23679999999999999999998741 1125788999999
Q ss_pred CccccHHHHHHHHHHhh-----cCCceEEEEecccccCCCCCCCCEEEEcCC------------------CCCHHHHHHh
Q 000174 761 SQEMRTFQMQETIAKFR-----DGRVTLLVATSVAEEGLDIRQCNVVIRFDL------------------AKTVLAYIQS 817 (1931)
Q Consensus 761 ~~~~~~~~R~~~l~~Fr-----~G~~~vLVaTdVaeeGlDip~~~lVI~fD~------------------p~s~~~yiQr 817 (1931)
++++.+|.++++.|+ +|..+|||||+++++|||||+|++||+|++ |.+..+|+||
T Consensus 347 --~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR 424 (773)
T 2xau_A 347 --SLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQR 424 (773)
T ss_dssp --TCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHH
T ss_pred --CCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhh
Confidence 999999999999999 999999999999999999999999999887 8999999999
Q ss_pred hccCCCCCCc
Q 000174 818 RGRARKPGSD 827 (1931)
Q Consensus 818 ~GRa~R~Gs~ 827 (1931)
+|||||.+..
T Consensus 425 ~GRaGR~~~G 434 (773)
T 2xau_A 425 AGRAGRTRPG 434 (773)
T ss_dssp HHGGGSSSSE
T ss_pred ccccCCCCCC
Confidence 9999998433
No 65
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.94 E-value=7.3e-25 Score=298.39 Aligned_cols=187 Identities=19% Similarity=0.233 Sum_probs=124.2
Q ss_pred CCCCcHHHHHHHHHHhc---------------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 301 EEQARPYQLDVLEQAKK---------------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~---------------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
...||+||.+|++.++. ++++++++||||||++++.++ .++.. .+...++|||||+++|+.
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~---~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATE---LDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTT---CTTCCEEEEEECGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHh---cCCCceEEEEeCcHHHHH
Confidence 35699999999999865 479999999999999985544 44432 233468999999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhccc--ccccceeEEEEeCCCcccCC
Q 000174 366 QQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSI--IKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 366 Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~--l~l~~i~lLV~DEaH~~~~~ 441 (1931)
||.++++.+.... +.|+.+. ..+...+ .+.+|+|+|||+|.+.+.... ..+..+.+||+|||||+...
T Consensus 345 Q~~~~f~~f~~~~---v~~~~s~-----~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~ 416 (1038)
T 2w00_A 345 QTMKEYQRFSPDS---VNGSENT-----AGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG 416 (1038)
T ss_dssp HHHHHHHTTSTTC---SSSSCCC-----HHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH
T ss_pred HHHHHHHHhcccc---cccccCH-----HHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch
Confidence 9999999875432 2233222 2222222 478999999999999876532 24567899999999998642
Q ss_pred CcHHHHHHHHHhhcCCCCCcEEEEEeecCCCCCCCCchhHHHHHHHHHHHhcCCeEEEecchHHHhhhCCCC
Q 000174 442 HPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKICNLESKLDSVVCTIKDRKELEKHVPMP 513 (1931)
Q Consensus 442 ~~~~~im~~~~~~~~~~~~p~iLgLTATP~~~~~~~~~~~~~~~l~~Le~~l~~~i~t~~~~~~l~~~~~~p 513 (1931)
..+. .+....+ ..++|||||||....+.... ......++..++.+.-.+.+..-...|
T Consensus 417 ~~~~----~I~~~~p---~a~~lgfTATP~~~~~~~~~-------~~t~~~FG~~i~~Y~l~~AI~dg~l~p 474 (1038)
T 2w00_A 417 EAQK----NLKKKFK---RYYQFGFTGTPIFPENALGS-------ETTASVFGRELHSYVITDAIRDEKVLK 474 (1038)
T ss_dssp HHHH----HHHHHCS---SEEEEEEESSCCCSTTCTTS-------CCHHHHHCSEEEEECHHHHHHHTSSCC
T ss_pred HHHH----HHHHhCC---cccEEEEeCCccccccchhh-------hHHHHHhCCeeEeecHHHHHhCCCcCC
Confidence 1222 2323222 26899999999864321000 012344566666665555555444444
No 66
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=99.92 E-value=1.5e-25 Score=218.17 Aligned_cols=93 Identities=33% Similarity=0.674 Sum_probs=85.6
Q ss_pred EcccchHHHHHHHhhcCCCCCCCccCceEEEEecCCCCCCceEEEEEEcCCCCCCCcccCCCCCCHHHHHHHHHHHHHHH
Q 000174 892 VSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKK 971 (1931)
Q Consensus 892 lt~~~Ai~ll~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~~~~~~v~LP~~~p~~~~~g~~~~sk~~Akr~AAf~Ac~~ 971 (1931)
||+++|+++|||||++||+|.|+.++|+|.++++... ...| |+|+||.++|++.++|++|+||++|||+|||+||++
T Consensus 1 lt~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~ 77 (102)
T 2kou_A 1 ISGGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHE 77 (102)
T ss_dssp CCCSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999998876522 2467 999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCC
Q 000174 972 LHEMGAFTDMLLPDKG 987 (1931)
Q Consensus 972 L~~~G~ldd~L~P~~~ 987 (1931)
||++|+|||||+|...
T Consensus 78 L~~~G~Ldd~LlP~~~ 93 (102)
T 2kou_A 78 LHNLGVLNDFLLPDSK 93 (102)
T ss_dssp HHHHCSCTTTSCCHHH
T ss_pred HHHCCCCccccCCCCC
Confidence 9999999999999653
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.91 E-value=4.7e-24 Score=279.58 Aligned_cols=95 Identities=22% Similarity=0.220 Sum_probs=89.6
Q ss_pred eEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc--CCceEEEEecccccCCCCCCCC
Q 000174 723 RAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD--GRVTLLVATSVAEEGLDIRQCN 800 (1931)
Q Consensus 723 k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~--G~~~vLVaTdVaeeGlDip~~~ 800 (1931)
..||||.++..++.+++.|.. .++.+..+|| +|++.+|.++++.|++ |+++|||||+++++|||+ +|+
T Consensus 322 g~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG-----~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~ 391 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI----RGLESAVIYG-----SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIR 391 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCCEEECT-----TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBS
T ss_pred CCEEEEcCHHHHHHHHHHHHh----cCCCeeeeec-----cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Ccc
Confidence 358999999999999999998 5789999999 9999999999999999 889999999999999999 999
Q ss_pred EEEEcCC--------------CCCHHHHHHhhccCCCCCCc
Q 000174 801 VVIRFDL--------------AKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 801 lVI~fD~--------------p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+||++|+ |.+..+|+||+|||||.|..
T Consensus 392 ~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~ 432 (677)
T 3rc3_A 392 RIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSR 432 (677)
T ss_dssp EEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSS
T ss_pred EEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCC
Confidence 9999999 88999999999999999954
No 68
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.90 E-value=1.2e-24 Score=234.37 Aligned_cols=133 Identities=29% Similarity=0.439 Sum_probs=115.8
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|++.|||.|.+..+| +||||+|+....||||||||||+||+++++.+||.+||+.+||.||.+|+.+|||.+|+++|
T Consensus 29 ~~le~~lgy~F~d~~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia 108 (170)
T 3o2r_A 29 EKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIA 108 (170)
T ss_dssp HHHHHHHTCCCSSHHHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHH
Confidence 56788899999775555 99999999887899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||++||+..+-.. . .....
T Consensus 109 ~~lgL~~~l~~~~~~~-------------------------------------------------~---------~~~~~ 130 (170)
T 3o2r_A 109 NSLNLGDFILMSVAEE-------------------------------------------------N---------NGGKE 130 (170)
T ss_dssp HHTTGGGTCBCCHHHH-------------------------------------------------H---------TTGGG
T ss_pred HHcCcHHhhhcCcchh-------------------------------------------------h---------cCCCC
Confidence 9999999998653000 0 00123
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+|++||+|||||||+|+|+|.+.|.+|+..+
T Consensus 131 ~~~ilad~fEAliGAiylD~G~~~a~~~i~~~ 162 (170)
T 3o2r_A 131 KPSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (170)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 57899999999999999999999999998644
No 69
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.89 E-value=7.8e-23 Score=236.89 Aligned_cols=181 Identities=15% Similarity=0.165 Sum_probs=150.6
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.++++.+..+...+.+.+.++..|++||.++++.+++ +|+|++++||+|||++|++++.+.+.. .+.+.++|||+|
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~---~~~~~~~lil~P 100 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL---ENLSTQILILAP 100 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---cCCCceEEEEeC
Confidence 4455555444556888999999999999999999998 899999999999999999998765532 234568999999
Q ss_pred ChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++++..++|+... ..|...+.+++|+|+||++|.+.+.++.+.+.++++||+|||
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPL-----SQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEA 175 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCH-----HHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCH-----HHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCc
Confidence 9999999999999874 6889999998653 344455578999999999999999888888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.....|...+..+....+. .+++++||||+.
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~--~~~~l~lSAT~~ 209 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPA--SKQMLAVSATYP 209 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCS--SCEEEEEESCCC
T ss_pred hHhhcCcchHHHHHHHHHhCCC--CCeEEEEEeccC
Confidence 9998864488888877776543 478999999975
No 70
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=1.3e-22 Score=233.54 Aligned_cols=183 Identities=16% Similarity=0.167 Sum_probs=148.2
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.|.+.+..+...+.+...++..|++||.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~Pt 91 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHT 91 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC---CTTCCCEEEECSC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc---cCCCEEEEEEeCC
Confidence 345555444455888889999999999999999998 899999999999999999998876542 2234579999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||+++++++. ++++..++|+.....+... +. ...++|+|+||++|.+.+.++.+.+.++++||+||||
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV-LK--KNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH-HH--HSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH-Hh--cCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 999999999999875 7889999998754322111 11 1356999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
++...+.|...+..+....+. .+++++|||||..
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPH--EKQVMMFSATLSK 202 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCS--SSEEEEEESCCCT
T ss_pred HHhcccCcHHHHHHHHHhCCC--cCeEEEEEeecCH
Confidence 998766788888877765542 4899999999874
No 71
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.88 E-value=2.5e-22 Score=228.50 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=147.6
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
+|++.+..+...+.+...++..|+++|.++++.+++ +|+++.+|||+|||++|++++.+.+.. ...+.++|||+||
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~---~~~~~~~lil~Pt 80 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDL---KKDNIQAMVIVPT 80 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT---TSCSCCEEEECSC
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcc---cCCCeeEEEEeCc
Confidence 344444444456889999999999999999999998 899999999999999999998765532 2345679999999
Q ss_pred hhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 361 VPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 361 ~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
++|+.||++.++.+. +..+..++|+.... ........+++|+|+||++|.+.+.++...+.++++||+||||
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLR----DDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHH----HHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHH----HHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 999999999999875 67888888876532 2233344688999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
++.+. .|...+..+....+. .+++++||||+.
T Consensus 157 ~~~~~-~~~~~l~~i~~~~~~--~~~~l~~SAT~~ 188 (206)
T 1vec_A 157 KLLSQ-DFVQIMEDIILTLPK--NRQILLYSATFP 188 (206)
T ss_dssp HHTST-TTHHHHHHHHHHSCT--TCEEEEEESCCC
T ss_pred HhHhh-CcHHHHHHHHHhCCc--cceEEEEEeeCC
Confidence 99874 677777777766543 478999999986
No 72
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.88 E-value=3.8e-22 Score=234.75 Aligned_cols=186 Identities=13% Similarity=0.105 Sum_probs=148.8
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh------cCCCcEE
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR------QNKKMLA 354 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~------~~~~~~v 354 (1931)
+|.+.+..+...+.+...++..||++|.++++.+++ +|+|++++||+|||++|++++.+.+..... ...+.++
T Consensus 24 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (253)
T 1wrb_A 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKC 103 (253)
T ss_dssp SSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSE
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceE
Confidence 455555555566788889999999999999999998 899999999999999999998877653210 1223579
Q ss_pred EEEeCChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEE
Q 000174 355 VFLVPKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLI 431 (1931)
Q Consensus 355 L~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV 431 (1931)
|||+||++|+.||+++++.+. ++.+..++|+... ...+.....+++|+|+||++|.+.+.++.+.+.++++||
T Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 104 LILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADT----HSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCS----HHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCH----HHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 999999999999999999865 5788888888653 233444456889999999999999998888899999999
Q ss_pred EeCCCcccCCCcHHHHHHHHHhhc--CCCCCcEEEEEeecCCC
Q 000174 432 LDECHHAVKKHPYSLVMSEFYHTT--SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 432 ~DEaH~~~~~~~~~~im~~~~~~~--~~~~~p~iLgLTATP~~ 472 (1931)
+||||++.+. .|...+..+.... +....+++++|||||..
T Consensus 180 iDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 180 LDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp EETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred EeCHHHHHhC-chHHHHHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 9999999875 6777777776642 22124789999999863
No 73
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.88 E-value=3.9e-22 Score=232.94 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=148.9
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh--hcCCCcEEEEEe
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ--RQNKKMLAVFLV 358 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~--~~~~~~~vL~Lv 358 (1931)
++.+.+..+...+.+.+.++..|+++|.++++.+++ +|+|++++||+|||++|++|+...+.... ....+.++|||+
T Consensus 30 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~ 109 (242)
T 3fe2_A 30 NFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA 109 (242)
T ss_dssp STTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe
Confidence 344444444455888899999999999999999998 89999999999999999999887765321 123456799999
Q ss_pred CChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 359 PKVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 359 PT~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
||++|+.|+.+.++.+. ++++..++|+.... ..+.....+++|+|+||++|.+.+.++.+.+.++++||||||
T Consensus 110 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 110 PTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG----PQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHH----HHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred CcHHHHHHHHHHHHHHHhhcCceEEEEECCCChH----HHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 99999999999988753 78999999987543 233333457899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. +|...+..+....+. .+++++||||+.
T Consensus 186 h~l~~~-~~~~~~~~i~~~~~~--~~q~~~~SAT~~ 218 (242)
T 3fe2_A 186 DRMLDM-GFEPQIRKIVDQIRP--DRQTLMWSATWP 218 (242)
T ss_dssp HHHHHT-TCHHHHHHHHTTSCS--SCEEEEEESCCC
T ss_pred HHHhhh-CcHHHHHHHHHhCCc--cceEEEEEeecC
Confidence 999884 677777777776543 479999999975
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.88 E-value=1.7e-22 Score=230.02 Aligned_cols=182 Identities=20% Similarity=0.187 Sum_probs=146.9
Q ss_pred cccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 284 ECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
.+.+..+...+.+.+.++..|++||.++++.+++ +++|++++||+|||++|++++.+.+......+.+.++|||+||++
T Consensus 4 ~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 4 KDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp GGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHH
T ss_pred hhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHH
Confidence 3344333455788899999999999999999999 899999999999999999998876542211234567999999999
Q ss_pred HHHHHHHHHHHHc-CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCC
Q 000174 363 LVYQQAEVIREQT-GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKK 441 (1931)
Q Consensus 363 Lv~Q~~~~l~~~~-~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~ 441 (1931)
|+.||+++++.+. .+++..++|+..... .+.....+++|+|+||++|.+.+.++.+.+.++++||+||||++.+.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 84 LALQVASELTAVAPHLKVVAVYGGTGYGK----QKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECSSSCSHH----HHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHhhcceEEEEECCCChHH----HHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 9999999999986 578888998875432 23333468999999999999999988888999999999999999874
Q ss_pred CcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 442 HPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 442 ~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
.|...+..+....+. .+++++||||+..
T Consensus 160 -~~~~~~~~i~~~~~~--~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 160 -GFEEEVEALLSATPP--SRQTLLFSATLPS 187 (207)
T ss_dssp -TCHHHHHHHHHTSCT--TSEEEEECSSCCH
T ss_pred -chHHHHHHHHHhCCc--cCeEEEEEEecCH
Confidence 666777777665432 4789999999863
No 75
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.88 E-value=3.7e-22 Score=219.06 Aligned_cols=158 Identities=21% Similarity=0.191 Sum_probs=128.0
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE 1837 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~ 1837 (1931)
.+.||++.||||||+++..+.|++.. .| +.|+|.|.|+|..+++|.|.|||+|++.||+.||+.|..........
T Consensus 11 ~~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~ 90 (179)
T 1qu6_A 11 SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPL 90 (179)
T ss_dssp SSCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCS
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Confidence 35799999999999999889999754 45 47999999999989999999999999999999999998654321110
Q ss_pred cCCcCCcccCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHH
Q 000174 1838 KGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDS 1917 (1931)
Q Consensus 1838 ~~~~~~~~~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~ 1917 (1931)
.....+. ..+....|||+.|||+||+++|++ .|++ .+.||+|.+.|+++|+|++..+ +.|.| +|||+||+.
T Consensus 91 ~~~~~~~-~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~-~~~G~~h~~~F~~~v~v~~~~~---~~g~g---~sKK~Ak~~ 161 (179)
T 1qu6_A 91 LLTTTNS-SEGLSMGNYIGLINRIAQKKRLTV-NYEQ-CASGVHGPEGFHYKCKMGQKEY---SIGTG---STKQEAKQL 161 (179)
T ss_dssp SCCCSCS-SCCCCCCCCHHHHHHHHHHSCCEE-EEEE-EEECSSSSSEEEEEEEEETTBC---CEEEE---SSHHHHHHH
T ss_pred cCCCCCc-ccccCCCCHHHHHHHHHHhcCCcc-eEEe-cCcCCCCCCeEEEEEEECCEEE---eeEEE---CCHHHHHHH
Confidence 0000011 112245799999999999999987 7996 5889999999999999986543 48999 999999999
Q ss_pred HHHHHHHHHhhh
Q 000174 1918 AAVLLLELLNKW 1929 (1931)
Q Consensus 1918 AA~~~l~~L~~~ 1929 (1931)
||+.||..|...
T Consensus 162 AA~~al~~L~~~ 173 (179)
T 1qu6_A 162 AAKLAYLQILSE 173 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999999753
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.88 E-value=2.1e-22 Score=231.45 Aligned_cols=179 Identities=15% Similarity=0.116 Sum_probs=144.1
Q ss_pred ccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 283 QECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 283 ~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
+.+.+..+...+.+.+.++.+|+++|.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+||+
T Consensus 6 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP---ERAEVQAVITAPTR 82 (219)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT---TSCSCCEEEECSSH
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh---CcCCceEEEEcCcH
Confidence 44444444455888999999999999999999998 899999999999999999998776542 23456799999999
Q ss_pred hHHHHHHHHHHHHc-------CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 362 PLVYQQAEVIREQT-------GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 362 ~Lv~Q~~~~l~~~~-------~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
+|+.||+++++++. ++.+..++|+.... ..+.....+++|+|+||++|.+.+.++.+.+.++++||+||
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ----KALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH----HTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH----HHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 99999999999875 57788888876432 11222224789999999999999998888899999999999
Q ss_pred CCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 435 CHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 435 aH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
||++.+. .|...+..+....+. .+++++||||+.
T Consensus 159 ah~~~~~-~~~~~l~~i~~~~~~--~~~~l~~SAT~~ 192 (219)
T 1q0u_A 159 ADLMLDM-GFITDVDQIAARMPK--DLQMLVFSATIP 192 (219)
T ss_dssp HHHHHHT-TCHHHHHHHHHTSCT--TCEEEEEESCCC
T ss_pred chHHhhh-ChHHHHHHHHHhCCc--ccEEEEEecCCC
Confidence 9999874 566666666665432 478999999985
No 77
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.87 E-value=7.2e-22 Score=231.32 Aligned_cols=181 Identities=17% Similarity=0.248 Sum_probs=148.3
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|.+.+..+...+.+...++..|++||.++++.+++ +++|++++||+|||++|++++.+.+.. ...+.++|||+|
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~---~~~~~~~lil~P 119 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLE---TPQRLFALVLTP 119 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH---SCCSSCEEEECS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc---CCCCceEEEEeC
Confidence 3455555555556889999999999999999999998 999999999999999999998876653 234567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++++..++|+... ...+.....+++|+|+||++|.+.+.+ +.+.+.++++||||||
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDS----MSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCH----HHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCCh----HHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 9999999999998864 7889999998653 223334447899999999999999876 5567899999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..+....+. ..++++||||+.
T Consensus 196 h~l~~~-~~~~~l~~i~~~~~~--~~~~l~~SAT~~ 228 (249)
T 3ber_A 196 DRILNM-DFETEVDKILKVIPR--DRKTFLFSATMT 228 (249)
T ss_dssp HHHHHT-TCHHHHHHHHHSSCS--SSEEEEEESSCC
T ss_pred hhhhcc-ChHHHHHHHHHhCCC--CCeEEEEeccCC
Confidence 999875 677777777765543 478999999986
No 78
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=230.21 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=140.2
Q ss_pred CCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh---hcCCCcEEEEEeCChhHH
Q 000174 289 VGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ---RQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~---~~~~~~~vL~LvPT~~Lv 364 (1931)
.+...+++.+.++.+||++|.++++.+++ +|+|+.++||+|||++|++|+...+.... ....+.++|||+||++|+
T Consensus 28 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~ 107 (228)
T 3iuy_A 28 YPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELA 107 (228)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHH
Confidence 33455788889999999999999999998 89999999999999999999877654321 123456799999999999
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCC
Q 000174 365 YQQAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKH 442 (1931)
Q Consensus 365 ~Q~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~ 442 (1931)
.|++++++.+. ++++..++|+.... ..+.....+++|+|+||++|.+.+.++.+.+.++++|||||||++.+.
T Consensus 108 ~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~- 182 (228)
T 3iuy_A 108 LHVEAECSKYSYKGLKSICIYGGRNRN----GQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM- 182 (228)
T ss_dssp HHHHHHHHHHCCTTCCEEEECC----------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT-
T ss_pred HHHHHHHHHhcccCceEEEEECCCChH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhcc-
Confidence 99999999974 78888888886543 233344468999999999999999888888999999999999999874
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.|...+..+....+. .+++++||||+.
T Consensus 183 ~~~~~~~~i~~~~~~--~~~~l~~SAT~~ 209 (228)
T 3iuy_A 183 EFEPQIRKILLDVRP--DRQTVMTSATWP 209 (228)
T ss_dssp TCHHHHHHHHHHSCS--SCEEEEEESCCC
T ss_pred chHHHHHHHHHhCCc--CCeEEEEEeeCC
Confidence 677777777665543 479999999965
No 79
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.87 E-value=7.4e-23 Score=235.87 Aligned_cols=133 Identities=29% Similarity=0.432 Sum_probs=115.7
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|+++|||.|.+..|| +||||+|+....||||||||||+||+++++.+||.+||+.+||.||.+|+.+|||.+|+++|
T Consensus 29 ~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a 108 (248)
T 3n3w_A 29 EKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIA 108 (248)
T ss_dssp HHHHHHHTCCCSSHHHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHH
Confidence 56778899999776555 99999999877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||++||+..+-.. . .....
T Consensus 109 ~~lgL~~~l~~~~~e~------------------------------------------------~----------~~g~~ 130 (248)
T 3n3w_A 109 NSLNLGDFILMSVAEE------------------------------------------------N----------NGGKE 130 (248)
T ss_dssp HHTTGGGTCBCCHHHH------------------------------------------------H----------TTGGG
T ss_pred HHcCcHHHhhcCchhh------------------------------------------------h----------cCCCC
Confidence 9999999998643000 0 00123
Q ss_pred ccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
.+|.+||+|||||||+|+|+|.+.|..|+..+
T Consensus 131 ~~~~lad~fEAliGAiyld~G~~~~~~~i~~~ 162 (248)
T 3n3w_A 131 KPSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCChHHHHHHHHHH
Confidence 57899999999999999999999999998654
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.87 E-value=1.2e-20 Score=238.15 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
..|...+++.+... ...+.++||||+++..++.|+..|.. .++++..+|| ++.++++..+.++|+.| .
T Consensus 457 ~eK~~al~~~I~~~-~~~gqpVLVFt~S~e~sE~Ls~~L~~----~Gi~~~vLhg-----kq~~rE~~ii~~ag~~g--~ 524 (822)
T 3jux_A 457 KEKYEKIVEEIEKR-YKKGQPVLVGTTSIEKSELLSSMLKK----KGIPHQVLNA-----KYHEKEAEIVAKAGQKG--M 524 (822)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCEEEEESSHHHHHHHHHHHHT----TTCCCEEECS-----CHHHHHHHHHHHHHSTT--C
T ss_pred HHHHHHHHHHHHHH-hhCCCCEEEEECCHHHHHHHHHHHHH----CCCCEEEeeC-----CchHHHHHHHHhCCCCC--e
Confidence 45888888888764 22356899999999999999999998 6899999999 76666666666677766 6
Q ss_pred EEEEecccccCCCCC--------CCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecCC
Q 000174 783 LLVATSVAEEGLDIR--------QCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERGN 836 (1931)
Q Consensus 783 vLVaTdVaeeGlDip--------~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~~ 836 (1931)
|||||++|+||+||+ +..+||+||+|.+...|+||+|||||.|..+ ++++..++
T Consensus 525 VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 525 VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999999999998 6679999999999999999999999999884 45666555
No 81
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.87 E-value=9.8e-22 Score=226.72 Aligned_cols=181 Identities=15% Similarity=0.118 Sum_probs=141.8
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
..+.+.+..+...+.+.+.++..|++||.++++.+++ +|+|++++||+|||++|++++.+.+.. ...+.++|||+|
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~---~~~~~~~lil~P 90 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT---SVKAPQALMLAP 90 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT---TCCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhc---cCCCceEEEEEC
Confidence 3455555444455788889999999999999999998 899999999999999999998766542 234568999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECH 436 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH 436 (1931)
|++|+.||+++++.+. ++++..++|+..... ....+..++|+|+||++|.+.+.++.+.+.++++|||||||
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVE-----DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC---------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHH-----HHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 9999999999999864 678888888765322 11223458999999999999999888889999999999999
Q ss_pred cccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 437 HAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 437 ~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
++... .|...+..+....+. .+++++||||+..
T Consensus 166 ~~~~~-~~~~~l~~i~~~~~~--~~~~i~lSAT~~~ 198 (224)
T 1qde_A 166 EMLSS-GFKEQIYQIFTLLPP--TTQVVLLSATMPN 198 (224)
T ss_dssp HHHHT-TCHHHHHHHHHHSCT--TCEEEEEESSCCH
T ss_pred HHhhh-hhHHHHHHHHHhCCc--cCeEEEEEeecCH
Confidence 99874 566666666665432 4889999999863
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.87 E-value=6.6e-22 Score=230.15 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=140.4
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.+|++.+..+...+.+...++..|+++|.++++.+++ +|+|++++||+|||++|++++.+.+.. ...+.++|||+|
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~---~~~~~~~lil~P 106 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEI---EFKETQALVLAP 106 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT---TSCSCCEEEECS
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh---cCCCceEEEEEC
Confidence 3455555444455788889999999999999999998 899999999999999999998776542 234567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCC-ccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDT-KQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~-~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++.+..++|+.... ..+.....+ ++|+|+||++|.+.+.++.+.+.++++||||||
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 182 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVR----NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC-----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchH----HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCc
Confidence 9999999999999875 57788888876532 223333333 899999999999999988888999999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..++...+ ..+++++||||+.
T Consensus 183 h~~~~~-~~~~~l~~i~~~~~--~~~~~i~~SAT~~ 215 (237)
T 3bor_A 183 DEMLSR-GFKDQIYEIFQKLN--TSIQVVLLSATMP 215 (237)
T ss_dssp HHHHHT-TCHHHHHHHHHHSC--TTCEEEEECSSCC
T ss_pred hHhhcc-CcHHHHHHHHHhCC--CCCeEEEEEEecC
Confidence 999874 56666666666543 3489999999986
No 83
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=226.85 Aligned_cols=182 Identities=18% Similarity=0.231 Sum_probs=144.4
Q ss_pred CccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhh-hcCCCcEEEEEeC
Q 000174 282 NQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQ-RQNKKMLAVFLVP 359 (1931)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~-~~~~~~~vL~LvP 359 (1931)
++.+.+..+...+.+.+.++..|+++|.++++.+++ +++|++++||+|||++|++|+.+.+.... ....+.++|||+|
T Consensus 26 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~P 105 (236)
T 2pl3_A 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISP 105 (236)
T ss_dssp BGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECS
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeC
Confidence 344444444455888899999999999999999998 99999999999999999999887765321 1123567999999
Q ss_pred ChhHHHHHHHHHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCC
Q 000174 360 KVPLVYQQAEVIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDEC 435 (1931)
Q Consensus 360 T~~Lv~Q~~~~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEa 435 (1931)
|++|+.||+++++.+. ++++..++|+..... ....+.+++|+|+||++|.+.+.+. .+.+.++++||+|||
T Consensus 106 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 106 TRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH-----EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHH-----HHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred CHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHH-----HHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999875 578999999865422 2223368999999999999988764 467889999999999
Q ss_pred CcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 436 HHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 436 H~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
|++.+. .|...+..++...+. .+++++||||+.
T Consensus 181 h~~~~~-~~~~~~~~i~~~~~~--~~~~l~~SAT~~ 213 (236)
T 2pl3_A 181 DRILDM-GFADTMNAVIENLPK--KRQTLLFSATQT 213 (236)
T ss_dssp HHHHHT-TTHHHHHHHHHTSCT--TSEEEEEESSCC
T ss_pred HHHhcC-CcHHHHHHHHHhCCC--CCeEEEEEeeCC
Confidence 999874 677777777766543 478999999986
No 84
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=233.67 Aligned_cols=180 Identities=17% Similarity=0.111 Sum_probs=147.7
Q ss_pred CCccccCCCCcchhhhhcCCCCCCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEE
Q 000174 281 INQECNGKVGKKSEAKEKMPEEQARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFL 357 (1931)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~L 357 (1931)
.+|.+.+..+...+.+..+++..|+++|.++++.++. +|+|++++||||||++|++|+.+.+.. .....++|||
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~---~~~~~~~lil 168 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEP---ANKYPQCLCL 168 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCT---TSCSCCEEEE
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhc---cCCCceEEEE
Confidence 4455555555566889999999999999999999987 799999999999999999998876542 2345679999
Q ss_pred eCChhHHHHHHHHHHHHc----CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhc-ccccccceeEEEE
Q 000174 358 VPKVPLVYQQAEVIREQT----GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRH-SIIKMEAINLLIL 432 (1931)
Q Consensus 358 vPT~~Lv~Q~~~~l~~~~----~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~-~~l~l~~i~lLV~ 432 (1931)
+||++|+.|++++++.+. ++.+..+.|+..... .....++|+|+||++|++++.+ +.+.+.++++|||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-------hhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 999999999999999864 577888888765321 1135789999999999999966 6778999999999
Q ss_pred eCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 433 DECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 433 DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
||||++.+...|...+..+....+. .++++++|||+..
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~--~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPR--NCQMLLFSATFED 279 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCT--TCEEEEEESCCCH
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCC--CCEEEEEeccCCH
Confidence 9999999756888888888776543 4899999999863
No 85
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=231.03 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=143.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhh-cCCCcEEEEEeCChhHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQR-QNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~-~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
..+.+...++..|+++|.++++.++. +|+|++++||||||++|++++.+.+..... ...+.++|||+||++|+.|+++
T Consensus 65 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~ 144 (262)
T 3ly5_A 65 TLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFG 144 (262)
T ss_dssp HHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHH
Confidence 44788889999999999999999998 899999999999999999999887765321 1235679999999999999999
Q ss_pred HHHHHc---CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcc-cccccceeEEEEeCCCcccCCCcHH
Q 000174 370 VIREQT---GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHS-IIKMEAINLLILDECHHAVKKHPYS 445 (1931)
Q Consensus 370 ~l~~~~---~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~-~l~l~~i~lLV~DEaH~~~~~~~~~ 445 (1931)
++++++ +..+..++|+... ...+.....+++|+|+||++|.+++... .+.+.++++|||||||++.+. +|.
T Consensus 145 ~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~-~~~ 219 (262)
T 3ly5_A 145 VLKELMTHHVHTYGLIMGGSNR----SAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV-GFE 219 (262)
T ss_dssp HHHHHTTTCCSCEEEECSSSCH----HHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT-TCH
T ss_pred HHHHHHhhcCceEEEEECCCCH----HHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh-hHH
Confidence 999865 5778888887653 3344444467999999999999988764 367899999999999999884 677
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeecCCC
Q 000174 446 LVMSEFYHTTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 446 ~im~~~~~~~~~~~~p~iLgLTATP~~ 472 (1931)
..+..+....+. .+++++||||+..
T Consensus 220 ~~l~~i~~~~~~--~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 220 EELKQIIKLLPT--RRQTMLFSATQTR 244 (262)
T ss_dssp HHHHHHHHHSCS--SSEEEEECSSCCH
T ss_pred HHHHHHHHhCCC--CCeEEEEEecCCH
Confidence 777777776543 4899999999863
No 86
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.86 E-value=1.9e-22 Score=228.06 Aligned_cols=133 Identities=26% Similarity=0.400 Sum_probs=107.7
Q ss_pred HHhhhcCCC-CChhHHH-HHhccccCCC-----------CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhh
Q 000174 1373 QLKDKINYP-VPASKIL-EALTAASCQE-----------TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1439 (1931)
Q Consensus 1373 ~l~~~l~~~-~~~~~ll-~AlT~~s~~~-----------~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~ 1439 (1931)
.++..|||+ |.+..|| +||||+|+.. ..||||||||||+||+++++.|||.+||+.+||.||.+|+.
T Consensus 87 ~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~ 166 (246)
T 3rv1_A 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKES 166 (246)
T ss_dssp GGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 467889999 8877666 9999999853 36999999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCc
Q 000174 1440 MVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGE 1519 (1931)
Q Consensus 1440 lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1519 (1931)
+|||.+|+++|+++||++||+... +++..
T Consensus 167 lVsn~~La~iA~~lgL~~~l~~~~-------g~~~~-------------------------------------------- 195 (246)
T 3rv1_A 167 IVNNNNLFDWSTKLNFTKRLQGNI-------ATPTR-------------------------------------------- 195 (246)
T ss_dssp HHSHHHHHHHHHHTTSHHHHCSSC-------C------------------------------------------------
T ss_pred HhCHHHHHHHHHHCCcHHHHhhcC-------CHhhh--------------------------------------------
Confidence 999999999999999999998531 11000
Q ss_pred ccCCCCCccccccchhhhHHHHHhhheeecc-C--HHHHHHHHhHh
Q 000174 1520 LEGDSSSYRVLSSKTLADVVEALIGVYYVEG-G--KDAANHLMKWI 1562 (1931)
Q Consensus 1520 ~~~~~~~~~~~~~K~lADvvEALiGA~~l~~-G--~~~a~~~~~~l 1562 (1931)
......+|.+||+|||+|||+|+|+ | .+.+..|+..+
T Consensus 196 ------~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L 235 (246)
T 3rv1_A 196 ------VVKDKMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEEL 235 (246)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred ------ccCcccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Confidence 0011247899999999999999998 4 88888887554
No 87
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=1.6e-20 Score=248.63 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=96.4
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
.+.++||||+++.+++.|++.|.+ .++++..+|| ++++.+|.+++++|++|+++|||||+++++|+|+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~-----~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v 508 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHH-----ELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEV 508 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHh----cCCCceeecC-----CCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCC
Confidence 357999999999999999999998 5789999999 9999999999999999999999999999999999999
Q ss_pred CEEEEcCC-----CCCHHHHHHhhccCCCCCCcEEEEE
Q 000174 800 NVVIRFDL-----AKTVLAYIQSRGRARKPGSDYILMI 832 (1931)
Q Consensus 800 ~lVI~fD~-----p~s~~~yiQr~GRa~R~Gs~~ivlv 832 (1931)
++||+||. |++..+|+||+|||||.+...++++
T Consensus 509 ~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~ 546 (664)
T 1c4o_A 509 SLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLY 546 (664)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEE
T ss_pred CEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEE
Confidence 99999998 9999999999999999876544444
No 88
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.86 E-value=2.8e-23 Score=271.29 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=140.2
Q ss_pred HhcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcCchhhhccCCchhH
Q 000174 1612 AITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALD 1691 (1931)
Q Consensus 1612 AlTH~S~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~gl~~~l~~~~~~~~ 1691 (1931)
||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+++|||++||.+|+++||++||+.+..+.
T Consensus 322 AlTh~s~~~~--~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~- 398 (756)
T 2qvw_A 322 PFGPFGVSHT--DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV- 398 (756)
T ss_dssp ECBGGGBCHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC--
T ss_pred hcccccccCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC-
Confidence 9999998543 6899999999999999999999999999999999999999999999999999999999999877642
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCchHHHHHHHHHhHhhcc-ccCCceeEEeeeccCCCCCCCCCC---CCCCC
Q 000174 1692 RQIRDFVKEVLEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLD-SGRDTSVVWQVFQPLLDPMVTPET---LPMHP 1767 (1931)
Q Consensus 1692 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~fEAiiGAiylD-sg~~~~~v~~~~~~~l~~~i~~~~---~~~~P 1767 (1931)
..+|+++|+|||+|||||+| +|++ .+++|+.+++.+.+.... ..++|
T Consensus 399 ---------------------------~~~~ilaD~~EAliGAiylD~~G~~--~a~~~v~~~~~~~~~~~~~~~~~~Dp 449 (756)
T 2qvw_A 399 ---------------------------AKSKTWADMYEEIVGSIFTGPNGIY--GCEEFLAKTLMSPEHSKTVGSACPDA 449 (756)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHSTTHHH--HHHHHHHHHHBCGGGSCC---CCCHH
T ss_pred ---------------------------CcccHHHhHHHHHhCcccccccChH--HHHHHHHHHHHhhhhcccccccccCc
Confidence 35899999999999999999 9976 567888888887765432 35788
Q ss_pred -hHHHHHHHHhhcCCceeEEeccCCeEEEEEEECCEEEEEeecCCHHHHH---------HHHHHHHHHHHHhhh
Q 000174 1768 -VRELQERCQQQAEGLEYKASRSGNLATVEVYIDGVQVGVAQNPQKKMAQ---------KLAARNALAVLKEKE 1831 (1931)
Q Consensus 1768 -~~~L~e~~~~~~~~~~y~~~~~g~~f~v~V~v~g~~~~~g~g~skk~Ak---------~~AA~~AL~~L~~~~ 1831 (1931)
++.|||++|.++ ++.|.+.+.+.|| .+||+.||++|++..
T Consensus 450 ~Kt~LqE~~q~~~------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~ 499 (756)
T 2qvw_A 450 VTKASKRVCMGEA------------------------GAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIP 499 (756)
T ss_dssp HHHHHHHHHTSCC------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHhccc------------------------hhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccc
Confidence 999999998543 2455566677787 789999999998754
No 89
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.85 E-value=1.1e-21 Score=230.75 Aligned_cols=90 Identities=32% Similarity=0.546 Sum_probs=82.8
Q ss_pred HHHhhhcCCCCChh-HHHHHhccccCCCC---CCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHH
Q 000174 1372 IQLKDKINYPVPAS-KILEALTAASCQET---FCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLY 1447 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~-~ll~AlT~~s~~~~---~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~ 1447 (1931)
.+|++.|||+|.+. +|.+||||+|+... .|||||||||||||+++++.|||.+||+.+||.||.+|+.+|||.+|+
T Consensus 16 ~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~La 95 (265)
T 3c4b_A 16 ETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFA 95 (265)
T ss_dssp HHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHHHH
Confidence 46788899999765 45599999999643 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccceec
Q 000174 1448 QYALSKGLQSYIQA 1461 (1931)
Q Consensus 1448 ~~a~~~gL~~~i~~ 1461 (1931)
.+|+++||+.||+.
T Consensus 96 ~~a~~lgl~~~l~~ 109 (265)
T 3c4b_A 96 SLAVKYDYHKYFKA 109 (265)
T ss_dssp HHHHHTTGGGTCBC
T ss_pred HHHHHcChHHHHHh
Confidence 99999999999975
No 90
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.85 E-value=8.9e-22 Score=224.55 Aligned_cols=128 Identities=29% Similarity=0.452 Sum_probs=113.6
Q ss_pred HHHhhhcCCCCChhHHH-HHhccccCCCCCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHH
Q 000174 1372 IQLKDKINYPVPASKIL-EALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYA 1450 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll-~AlT~~s~~~~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a 1450 (1931)
.+|++.|||.|.+..+| +||||+|+....||||||||||+||+++++.|||.+||+.+||.||.+|+.+|||.+|+.+|
T Consensus 5 ~~l~~~lg~~f~~~~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a 84 (221)
T 2nug_A 5 EQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLA 84 (221)
T ss_dssp HHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHH
Confidence 46888999999765544 99999999877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCcccc
Q 000174 1451 LSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVL 1530 (1931)
Q Consensus 1451 ~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1530 (1931)
.++||+.||+..+.. .
T Consensus 85 ~~l~l~~~l~~~~~~----------------------------------------------------------------~ 100 (221)
T 2nug_A 85 QKLELHKFIRIKRGK----------------------------------------------------------------I 100 (221)
T ss_dssp HTTTGGGTCBSCTTC----------------------------------------------------------------C
T ss_pred HHcChHHhhccCCCc----------------------------------------------------------------c
Confidence 999999999754300 0
Q ss_pred ccchhhhHHHHHhhheeeccCHHH--HHHHHhHhh
Q 000174 1531 SSKTLADVVEALIGVYYVEGGKDA--ANHLMKWIG 1563 (1931)
Q Consensus 1531 ~~K~lADvvEALiGA~~l~~G~~~--a~~~~~~l~ 1563 (1931)
.+|.+||+|||||||+|+|+|.+. +..|+..+-
T Consensus 101 ~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~ 135 (221)
T 2nug_A 101 NETIIGDVFEALWAAVYIDSGRDANFTRELFYKLF 135 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 168999999999999999999988 998886543
No 91
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=215.79 Aligned_cols=169 Identities=31% Similarity=0.443 Sum_probs=127.7
Q ss_pred hcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH-HHHHHHHH
Q 000174 297 EKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ-QAEVIREQ 374 (1931)
Q Consensus 297 ~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q-~~~~l~~~ 374 (1931)
......+|++||.++++.+++ +++|+.++||+|||+++++++.+.+..........++|||+|+++|+.| |.+.++.+
T Consensus 27 ~~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 27 SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 335567899999999999998 8999999999999999999998877654333445689999999999999 88888887
Q ss_pred c--CCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhccc------ccccceeEEEEeCCCcccCCCcHHH
Q 000174 375 T--GYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSI------IKMEAINLLILDECHHAVKKHPYSL 446 (1931)
Q Consensus 375 ~--~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~------l~l~~i~lLV~DEaH~~~~~~~~~~ 446 (1931)
. ++++..++|+..... .|......++|+|+||+.|.+.+.... +.+.++++|||||||++.....|..
T Consensus 107 ~~~~~~v~~~~g~~~~~~----~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKI----SFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp HTTTSCEEECCC---CCC----CHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred hccCceEEEEeCCcccch----hHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 6 578888888765432 333344578999999999999887743 5678999999999999988768888
Q ss_pred HHHHHHhhc-----------CCCCCcEEEEEeec
Q 000174 447 VMSEFYHTT-----------SKEKRPSVFGMTAS 469 (1931)
Q Consensus 447 im~~~~~~~-----------~~~~~p~iLgLTAT 469 (1931)
++..+.... +....+++|+||||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 887776543 11245899999998
No 92
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.84 E-value=3.9e-21 Score=224.99 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=136.5
Q ss_pred chhhhhcCCCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHH
Q 000174 292 KSEAKEKMPEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEV 370 (1931)
Q Consensus 292 ~~~~l~~~~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~ 370 (1931)
..+.+.+.++..||++|.++++.+++ +++|+.++||+|||++|++++.+.+... ...+.++|||+||++|+.||+++
T Consensus 40 l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~~lil~Pt~~L~~q~~~~ 117 (245)
T 3dkp_A 40 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP--ANKGFRALIISPTRELASQIHRE 117 (245)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC--CSSSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc--ccCCceEEEEeCCHHHHHHHHHH
Confidence 44778889999999999999999998 8999999999999999999988766421 23456799999999999999999
Q ss_pred HHHHc---CCcEEEEeCCCcccccchHHH-HhhcCCccEEEEcHHHHHHHHhcc--cccccceeEEEEeCCCcccCC--C
Q 000174 371 IREQT---GYVVGHYCGEMGQDFWDAQRW-QREFDTKQVLVMTAQILLNILRHS--IIKMEAINLLILDECHHAVKK--H 442 (1931)
Q Consensus 371 l~~~~---~l~v~~~~G~~~~~~~~~~~w-~~~~~~~~IlV~Tpq~L~d~L~~~--~l~l~~i~lLV~DEaH~~~~~--~ 442 (1931)
+++++ ++++..++|+.... ..+ .....+++|+|+||++|.+.+.+. .+.+.++++|||||||++... .
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~ 193 (245)
T 3dkp_A 118 LIKISEGTGFRIHMIHKAAVAA----KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT 193 (245)
T ss_dssp HHHHTTTSCCCEECCCHHHHHH----TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--
T ss_pred HHHHhcccCceEEEEecCccHH----HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc
Confidence 99875 56676666543211 111 112357899999999999999876 467899999999999999863 3
Q ss_pred cHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 443 PYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 443 ~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
.|...+..++..... ...++++||||+.
T Consensus 194 ~~~~~~~~i~~~~~~-~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 194 GFRDQLASIFLACTS-HKVRRAMFSATFA 221 (245)
T ss_dssp CHHHHHHHHHHHCCC-TTCEEEEEESSCC
T ss_pred cHHHHHHHHHHhcCC-CCcEEEEEeccCC
Confidence 677777777654322 3478999999975
No 93
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=215.31 Aligned_cols=157 Identities=24% Similarity=0.208 Sum_probs=118.3
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEec-cC--CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc-
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASR-SG--NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE- 1837 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g--~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~- 1837 (1931)
..++|++.||||||+++.. +.|++.. .| +.|+|.|.|+|..++.|.|.|||+|++.||+.||..|..........
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 3579999999999999876 6999754 44 58999999999999999999999999999999999997641110000
Q ss_pred --cCCcC----C--cccC--------CCCccchHHHHHHHHHHcCCCCCcce--eecccCCCCCceeEEEEEEEecCCCc
Q 000174 1838 --KGDEN----G--KKRK--------NGTQTFTRQTLNDICLRRNWPMPLYR--CVREGGPAHAKRFTYAVRVNTTDKGW 1899 (1931)
Q Consensus 1838 --~~~~~----~--~~~~--------~~~~~n~~~~L~e~~~~~~~~~p~y~--~~~~~Gp~h~~~F~~~~~v~~~~~~~ 1899 (1931)
..... . .... .....||++.||| |++++|++|.|+ ++.+.||+|.+.|+++|. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~------~~ 172 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG------KH 172 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET------TE
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE------EE
Confidence 00000 0 0000 0123589999999 999999999999 888899999999999886 33
Q ss_pred ceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1900 TDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1900 ~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.+.|.| +|||+||+.||+.||+.|...
T Consensus 173 ~~~G~G---~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 173 TVRGWC---KNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp EEEEEE---SSHHHHHHHHHHHHHHHHSTT
T ss_pred EEEEEe---CCHHHHHHHHHHHHHHHHHhh
Confidence 568999 999999999999999999764
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.83 E-value=1.4e-19 Score=239.56 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=96.9
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEecccccCCCCCCC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATSVAEEGLDIRQC 799 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTdVaeeGlDip~~ 799 (1931)
.+.++||||+++..++.|++.|.+ .++++..+|| ++++.+|.+++++|++|+++|||||+++++|+|+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~-----~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v 514 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHS-----EIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEV 514 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeC-----CCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCC
Confidence 457999999999999999999998 5789999999 9999999999999999999999999999999999999
Q ss_pred CEEEEcCC-----CCCHHHHHHhhccCCCCCCc-EEEEEecC
Q 000174 800 NVVIRFDL-----AKTVLAYIQSRGRARKPGSD-YILMIERG 835 (1931)
Q Consensus 800 ~lVI~fD~-----p~s~~~yiQr~GRa~R~Gs~-~ivlv~~~ 835 (1931)
++||+||. |.+..+|+||+|||||.+.. .++++...
T Consensus 515 ~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 515 SLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred CEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 99999998 99999999999999998544 33344433
No 95
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.5e-21 Score=225.90 Aligned_cols=133 Identities=29% Similarity=0.385 Sum_probs=113.4
Q ss_pred HHHhhhcCCCCChhHHHHHhccccCCC----CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHH
Q 000174 1372 IQLKDKINYPVPASKILEALTAASCQE----TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLY 1447 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~~ll~AlT~~s~~~----~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~ 1447 (1931)
.+|++.|||+|+..++.+||||+|+.. ..||||||||||+||+++++.|||.+||+.+||.||.+|+.+|||.+|+
T Consensus 8 ~~l~~~lgy~f~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la 87 (242)
T 2a11_A 8 QPLLDALGVDLPDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALA 87 (242)
T ss_dssp HHHHHHHTSCCCHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHH
Confidence 467888999995566669999999842 4699999999999999999999999999999999999999999999999
Q ss_pred HHHHHc---CCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCC
Q 000174 1448 QYALSK---GLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDS 1524 (1931)
Q Consensus 1448 ~~a~~~---gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1524 (1931)
++|.++ ||++||+..+-.. . .+
T Consensus 88 ~~a~~l~~~gL~~~l~~~~~e~------------------------------------------------~-~~------ 112 (242)
T 2a11_A 88 DVARRLCAEGLGVHVLLGRGEA------------------------------------------------N-TG------ 112 (242)
T ss_dssp HHHHHHSSSCSGGGCBCCHHHH------------------------------------------------H-TT------
T ss_pred HHHHHhhhhChHHHhhcCchhh------------------------------------------------h-cC------
Confidence 999999 9999997543000 0 00
Q ss_pred CCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1525 SSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1525 ~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
....+|.+||+|||||||+|+|+|.+.+..|+..+
T Consensus 113 ---~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 147 (242)
T 2a11_A 113 ---GADKSSILADGMESLLGAIYLQHGMEKAREVILRL 147 (242)
T ss_dssp ---GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ---CCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 01247899999999999999999999999998765
No 96
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.82 E-value=2e-21 Score=225.57 Aligned_cols=133 Identities=24% Similarity=0.353 Sum_probs=112.6
Q ss_pred HHHhhhcCCCCChh-HHHHHhccccCCCC----C-----CCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhh
Q 000174 1372 IQLKDKINYPVPAS-KILEALTAASCQET----F-----CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1441 (1931)
Q Consensus 1372 ~~l~~~l~~~~~~~-~ll~AlT~~s~~~~----~-----nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lV 1441 (1931)
.+|++.|||.|.+. +|.+||||+|+... . ||||||||||+||+++++.|||.+||+.+||.||.+|+.+|
T Consensus 22 ~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV 101 (252)
T 1o0w_A 22 EEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAA 101 (252)
T ss_dssp HHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 56888899999655 45599999998431 2 99999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCccc
Q 000174 1442 SNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELE 1521 (1931)
Q Consensus 1442 sN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1521 (1931)
||.+|+++|.++||+.||+..+-. ... +
T Consensus 102 ~~~~la~~a~~lgL~~~l~~~~~e------------------------------------------------~~~-~--- 129 (252)
T 1o0w_A 102 SEEVLAMVSRKMNLGKFLFLGKGE------------------------------------------------EKT-G--- 129 (252)
T ss_dssp SHHHHHHHHHHTTHHHHCBCCHHH------------------------------------------------HHT-T---
T ss_pred CHHHHHHHHHHcCcHHhhccCchh------------------------------------------------hhc-C---
Confidence 999999999999999999854300 000 0
Q ss_pred CCCCCccccccchhhhHHHHHhhheeeccCHHHHHHHHhHh
Q 000174 1522 GDSSSYRVLSSKTLADVVEALIGVYYVEGGKDAANHLMKWI 1562 (1931)
Q Consensus 1522 ~~~~~~~~~~~K~lADvvEALiGA~~l~~G~~~a~~~~~~l 1562 (1931)
....++.+||+|||||||+|+|+|.+.+..|+..+
T Consensus 130 ------~~~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 130 ------GRDRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp ------GGGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred ------CCCCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01247899999999999999999999999998665
No 97
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.82 E-value=7.8e-21 Score=226.67 Aligned_cols=133 Identities=26% Similarity=0.387 Sum_probs=111.5
Q ss_pred HHhhhcCCC-CChhHHH-HHhccccCCC-----------CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhh
Q 000174 1373 QLKDKINYP-VPASKIL-EALTAASCQE-----------TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQ 1439 (1931)
Q Consensus 1373 ~l~~~l~~~-~~~~~ll-~AlT~~s~~~-----------~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~ 1439 (1931)
.|+..|||+ |.+..|| +||||+|+.. ..||||||||||+||+++++.|||.+||+.+||.||.+|+.
T Consensus 87 ~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~ 166 (341)
T 3rv0_A 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKES 166 (341)
T ss_dssp TTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 467889999 9877666 9999999864 25899999999999999999999999999999999999999
Q ss_pred hhccHHHHHHHHHcCCccceeccccCCCCccCCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCc
Q 000174 1440 MVSNLVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGE 1519 (1931)
Q Consensus 1440 lVsN~~L~~~a~~~gL~~~i~~~~f~~~~w~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1519 (1931)
+|||.+|+.+|.++||++||+... +++. .
T Consensus 167 lVs~~~La~iA~~lgL~~~l~~~~-------g~~~----------------------------------------~---- 195 (341)
T 3rv0_A 167 IVNNNNLFDWSTKLNFTKRLQGNI-------ATPT----------------------------------------R---- 195 (341)
T ss_dssp HHSHHHHHHHHHHTTTTTTTCCSS-------CCC----------------------------------------------
T ss_pred HhCHHHHHHHHHHcCcHHHhhhcC-------Chhh----------------------------------------h----
Confidence 999999999999999999998531 1100 0
Q ss_pred ccCCCCCccccccchhhhHHHHHhhheeecc---CHHHHHHHHhHh
Q 000174 1520 LEGDSSSYRVLSSKTLADVVEALIGVYYVEG---GKDAANHLMKWI 1562 (1931)
Q Consensus 1520 ~~~~~~~~~~~~~K~lADvvEALiGA~~l~~---G~~~a~~~~~~l 1562 (1931)
......+|.+||+|||||||+|+|+ |++.|..|+..+
T Consensus 196 ------~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l 235 (341)
T 3rv0_A 196 ------VVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEEL 235 (341)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred ------ccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHH
Confidence 0001246899999999999999998 999999988543
No 98
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=2.3e-19 Score=195.78 Aligned_cols=117 Identities=24% Similarity=0.335 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|+..|.++|... ...++||||+++.+++.+++.|.. .++.+..+|| +|++.+|.+++++|++|+
T Consensus 18 ~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg-----~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHG-----GMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHHcCC
Confidence 3467999999999875 456899999999999999999998 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcEE
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYI 829 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~i 829 (1931)
++|||||+++++|+|+|++++||+||+|+++.+|+||+||++|.|+.+.
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~ 134 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK 134 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce
Confidence 9999999999999999999999999999999999999999999997733
No 99
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=1.6e-19 Score=198.59 Aligned_cols=115 Identities=23% Similarity=0.340 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.+.|...|.++|... ...++||||+++.+++.|++.|.. .++.+..+|| +|++.+|.+++++|++|++
T Consensus 15 ~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg-----~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHR-----GMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp GGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEEC-----CCCHHHHHHHHHHHHCCCC
Confidence 357999999999875 457999999999999999999998 5789999999 9999999999999999999
Q ss_pred eEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 782 TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 782 ~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
+|||||+++++|+|+|+|++||+||+|+|+..|+||+|||||.|+.+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g 129 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKG 129 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCC
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCc
Confidence 99999999999999999999999999999999999999999998763
No 100
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=201.39 Aligned_cols=121 Identities=26% Similarity=0.385 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
....|+..|.++|... ..++||||+++.+++.|++.|.. .++.+..+|| ++++.+|++++++|++|+
T Consensus 38 ~~~~K~~~L~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg-----~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 38 KEEAKMVYLLECLQKT----PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHG-----GKDQEERTKAIEAFREGK 104 (191)
T ss_dssp CGGGHHHHHHHHHTTS----CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECT-----TSCHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHhcCC
Confidence 3457999999988653 45899999999999999999987 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
++|||||+++++|||+|++++||+||+|+++..|+||+|||||.|+. .++++..
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~ 160 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINK 160 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECT
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999876 4444443
No 101
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=199.04 Aligned_cols=124 Identities=27% Similarity=0.385 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|+..|.++|... ..+.++||||+++.+++.|++.|.. .++.+..+|| +|++.+|++++++|++|+
T Consensus 28 ~~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg-----~~~~~~r~~~~~~f~~g~ 96 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHG-----DRSQRDREEALHQFRSGK 96 (185)
T ss_dssp CGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC-------------CHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeC-----CCCHHHHHHHHHHHHcCC
Confidence 3467999999999874 3568999999999999999999998 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE--EEEEecC
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY--ILMIERG 835 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~--ivlv~~~ 835 (1931)
++|||||+++++|+|+|+|++||+||+|+++.+|+||+|||+|.|+.+ ++++...
T Consensus 97 ~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 153 (185)
T 2jgn_A 97 SPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 153 (185)
T ss_dssp SSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG
T ss_pred CeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh
Confidence 999999999999999999999999999999999999999999999773 3444433
No 102
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.78 E-value=1e-18 Score=199.02 Aligned_cols=122 Identities=25% Similarity=0.404 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
....|+..|.+++... ...++||||+++.+++.|++.|.. .++.+..+|| +|++.+|++++++|++|+
T Consensus 14 ~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~lhg-----~~~~~~r~~~~~~f~~g~ 81 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHG-----DLSQGERERVLGAFRQGE 81 (212)
T ss_dssp CTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHH----HTCCEEEECS-----SSCHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEEC-----CCCHHHHHHHHHHHHCCC
Confidence 3467999999999865 367999999999999999999987 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEec
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIER 834 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~ 834 (1931)
++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+. .++++..
T Consensus 82 ~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~ 137 (212)
T 3eaq_A 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP 137 (212)
T ss_dssp CCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG
T ss_pred CeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch
Confidence 99999999999999999999999999999999999999999999866 3444443
No 103
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.78 E-value=9.5e-19 Score=191.29 Aligned_cols=120 Identities=20% Similarity=0.342 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|...|.+++... ...++||||+++..++.++..|.. .++.+..+|| +|++.+|.+++++|++|+++|
T Consensus 16 ~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~-----~~~~~~r~~~~~~f~~g~~~v 83 (165)
T 1fuk_A 16 YKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYS-----DLPQQERDTIMKEFRSGSSRI 83 (165)
T ss_dssp GHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHTTSCSE
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEEC-----CCCHHHHHHHHHHHHcCCCEE
Confidence 3899999999875 457999999999999999999998 5789999999 999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 784 LVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 784 LVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
||||+++++|+|+|++++||+||+|+++.+|+||+|||||.|+. .++++...
T Consensus 84 lv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 137 (165)
T 1fuk_A 84 LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 137 (165)
T ss_dssp EEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT
T ss_pred EEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch
Confidence 99999999999999999999999999999999999999999866 44455543
No 104
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=192.28 Aligned_cols=113 Identities=29% Similarity=0.399 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceE
Q 000174 704 PKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTL 783 (1931)
Q Consensus 704 ~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~v 783 (1931)
.|+..|.+++... ...++||||+++.++..++..|.. .++.+..+|| +|++.+|.+++++|++|+++|
T Consensus 20 ~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g-----~~~~~~R~~~~~~f~~g~~~v 87 (175)
T 2rb4_A 20 DKYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSG-----ELTVEQRASIIQRFRDGKEKV 87 (175)
T ss_dssp HHHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECS-----SCCHHHHHHHHHHHHTTSCSE
T ss_pred hHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHHcCCCeE
Confidence 4888888888654 467999999999999999999998 5789999999 999999999999999999999
Q ss_pred EEEecccccCCCCCCCCEEEEcCCC------CCHHHHHHhhccCCCCCCcE
Q 000174 784 LVATSVAEEGLDIRQCNVVIRFDLA------KTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 784 LVaTdVaeeGlDip~~~lVI~fD~p------~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
||||+++++|||+|+|++||+||+| +++.+|+||+|||||.|+.+
T Consensus 88 LvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g 138 (175)
T 2rb4_A 88 LITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 138 (175)
T ss_dssp EEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCE
T ss_pred EEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCc
Confidence 9999999999999999999999999 89999999999999998774
No 105
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.76 E-value=2.3e-18 Score=205.74 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=116.6
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC---C
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---Y 377 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---l 377 (1931)
.+|++||.++++.++. ++.|++++||+|||+++++++...+.. ...++||||||++|+.||.++++++.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~ 186 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGG
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHHhcccccc
Confidence 5899999999999988 789999999999999999988776652 234799999999999999999999753 4
Q ss_pred cEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCC
Q 000174 378 VVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSK 457 (1931)
Q Consensus 378 ~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~ 457 (1931)
.+..++|+.... .......+|+|+||+.+.+. ....+.++++||+||||++.++ .+..+ .....
T Consensus 187 ~~~~~~~~~~~~-------~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~-~~~~i----l~~~~- 250 (282)
T 1rif_A 187 MIKKIGGGASKD-------DKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGK-SISSI----ISGLN- 250 (282)
T ss_dssp GEEECSTTCSST-------TCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHH-HHHHH----TTTCT-
T ss_pred eEEEEeCCCcch-------hhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcc-cHHHH----HHHhh-
Confidence 667777765331 12336789999999988643 2245688999999999999753 33333 33221
Q ss_pred CCCcEEEEEeecCCCCC
Q 000174 458 EKRPSVFGMTASPVNLK 474 (1931)
Q Consensus 458 ~~~p~iLgLTATP~~~~ 474 (1931)
..+++++|||||.+..
T Consensus 251 -~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 251 -NCMFKFGLSGSLRDGK 266 (282)
T ss_dssp -TCCEEEEECSSCCTTS
T ss_pred -cCCeEEEEeCCCCCcc
Confidence 2489999999998643
No 106
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.74 E-value=5.8e-18 Score=201.65 Aligned_cols=123 Identities=25% Similarity=0.398 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|+..|.+++... ...++||||+++.+++.|++.|.. .++.+..+|| +|++.+|+.++++|++|+
T Consensus 11 ~~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg-----~l~~~~r~~~~~~f~~g~ 78 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHG-----DMSQGERERVMGAFRQGE 78 (300)
T ss_dssp CSSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECS-----CCCTHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeC-----CCCHHHHHHHHHHhhcCC
Confidence 3467999999999876 367999999999999999999987 5789999999 999999999999999999
Q ss_pred ceEEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc--EEEEEecC
Q 000174 781 VTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD--YILMIERG 835 (1931)
Q Consensus 781 ~~vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~--~ivlv~~~ 835 (1931)
.+|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.|+. .++++...
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~ 135 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 135 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH
Confidence 99999999999999999999999999999999999999999999865 44444443
No 107
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=9.5e-18 Score=194.41 Aligned_cols=141 Identities=28% Similarity=0.326 Sum_probs=113.5
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc-
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV- 378 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~- 378 (1931)
...|++||.++++.+++ +++|++++||+|||++++.++... +.+++|++|+++|+.||.+++++ +++.
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~-~~~~~ 160 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGI-FGEEY 160 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGG-GCGGG
T ss_pred CCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHh-CCCCe
Confidence 46899999999999988 779999999999999999887642 35699999999999999999999 7888
Q ss_pred EEEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCC
Q 000174 379 VGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKE 458 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~ 458 (1931)
+..++|+.. ...+|+|+|++.+...... ....+++|||||||++... .|..++..+
T Consensus 161 v~~~~g~~~-------------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~-~~~~i~~~~------- 216 (237)
T 2fz4_A 161 VGEFSGRIK-------------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQIAQMS------- 216 (237)
T ss_dssp EEEESSSCB-------------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-THHHHHHTC-------
T ss_pred EEEEeCCCC-------------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh-HHHHHHHhc-------
Confidence 888888753 2568999999999866542 1256999999999999874 666654322
Q ss_pred CCcEEEEEeecCCCCCC
Q 000174 459 KRPSVFGMTASPVNLKG 475 (1931)
Q Consensus 459 ~~p~iLgLTATP~~~~~ 475 (1931)
..+++|+|||||.+.++
T Consensus 217 ~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 217 IAPFRLGLTATFEREDG 233 (237)
T ss_dssp CCSEEEEEEESCC----
T ss_pred cCCEEEEEecCCCCCCC
Confidence 24789999999997554
No 108
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=4e-16 Score=200.55 Aligned_cols=129 Identities=21% Similarity=0.162 Sum_probs=105.5
Q ss_pred cCCCCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH---
Q 000174 298 KMPEEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ--- 374 (1931)
Q Consensus 298 ~~~~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~--- 374 (1931)
.+|+ .|+++|..+++.+++++ |+.+.||+|||++|++|+..... .+..|+||+||++||.|.++.+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~-IaeakTGeGKTLvf~Lp~~L~aL------~G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK-IAEMKTGEGKTLVATLAVALNAL------TGKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS-EEECCSTHHHHHHHHHHHHHHHT------TCSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HhCC-CCcHHHHhhcccccCCc-eeeccCCCchHHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3676 99999999999999966 99999999999999999853222 1346999999999999988888764
Q ss_pred cCCcEEEEeCCCcccccchHHHHhhcCCccEEEEcHHHH-HHHHhccc------cccc---ceeEEEEeCCCcccC
Q 000174 375 TGYVVGHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQIL-LNILRHSI------IKME---AINLLILDECHHAVK 440 (1931)
Q Consensus 375 ~~l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L-~d~L~~~~------l~l~---~i~lLV~DEaH~~~~ 440 (1931)
+|+++++++|++... .++....++|+|+||+.| +|+|..+. +.+. .++++|+||||+++.
T Consensus 147 lGLsv~~i~Gg~~~~------~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 147 LGLSVGVIQHASTPA------ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp TTCCEEECCTTCCHH------HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred cCCeEEEEeCCCCHH------HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 589999999987632 122234799999999999 89887653 4567 899999999999873
No 109
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.56 E-value=3.8e-19 Score=195.44 Aligned_cols=114 Identities=31% Similarity=0.460 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCce
Q 000174 703 TPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVT 782 (1931)
Q Consensus 703 s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~ 782 (1931)
+.|+..|.++|... ...++||||+++.+++.+++.|.. .++.+..+|| +|++.+|.+++++|++|+++
T Consensus 15 ~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g-----~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 15 EHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLRE----AGINNCYLEG-----EMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 56888888888653 467999999999999999999987 5789999999 99999999999999999999
Q ss_pred EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCcE
Q 000174 783 LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDY 828 (1931)
Q Consensus 783 vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~~ 828 (1931)
|||||+++++|+|+|+|++||+||+|+++..|+||+|||||.|+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g 128 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKG 128 (170)
Confidence 9999999999999999999999999999999999999999998763
No 110
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.70 E-value=2.2e-16 Score=180.43 Aligned_cols=152 Identities=27% Similarity=0.295 Sum_probs=115.3
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhh--
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAK-- 1836 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~-- 1836 (1931)
..+|++.|+++++. +..+.|++.. .| +.|+|+|.|+|.. +.|.|.|||+|++.||+.||+.|.........
T Consensus 3 ~~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CCCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 35777777777754 3457999754 45 4899999999988 59999999999999999999999764311000
Q ss_pred ------c-----cCCc------------C-------------C----------cc----------cC---------CCCc
Q 000174 1837 ------E-----KGDE------------N-------------G----------KK----------RK---------NGTQ 1851 (1931)
Q Consensus 1837 ------~-----~~~~------------~-------------~----------~~----------~~---------~~~~ 1851 (1931)
. ..+. . + .. .. +...
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 0 0000 0 0 00 00 0124
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.||++.|||+ ++.|.|+++.++||+|.+.|++.|+|++. .+.|.| +|||+|||.||+.||+.|...
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G~G---~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQ----FFEGSG---RNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHHHccc
Confidence 6999999999 57899999999999999999999999643 458999 999999999999999999753
No 111
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.67 E-value=9.3e-17 Score=189.15 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=95.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC-
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG- 779 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G- 779 (1931)
..++|+..|.++|.... ..+.|+||||+++.+++.|...|... .++.+..+|| ++++.+|++++++|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G-----~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYG-----ELSKKERDDIISKFQNNP 163 (271)
T ss_dssp TTCHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECT-----TSCHHHHHHHHHHHHHCT
T ss_pred ccCHHHHHHHHHHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEEC-----CCCHHHHHHHHHHhcCCC
Confidence 45789999999998862 24689999999999999999999862 2678999999 99999999999999998
Q ss_pred Cce-EEEEecccccCCCCCCCCEEEEcCCCCCHHHHHHhhccCCCCCCc
Q 000174 780 RVT-LLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSD 827 (1931)
Q Consensus 780 ~~~-vLVaTdVaeeGlDip~~~lVI~fD~p~s~~~yiQr~GRa~R~Gs~ 827 (1931)
+++ +||+|+++++|||++.|++||+||+|||+..|+||+||++|.|++
T Consensus 164 ~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 164 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCC
Confidence 777 899999999999999999999999999999999999999999987
No 112
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.66 E-value=1.3e-15 Score=197.98 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHh----c-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCC
Q 000174 303 QARPYQLDVLEQAK----K-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGY 377 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l----~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l 377 (1931)
+|||+|.+++..+. . +++|+.++||+|||++|++|+... ..+++|++||++|+.|+.+++.. +++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---------~~~~~~~~~t~~l~~q~~~~~~~-l~~ 76 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---------KKKVLIFTRTHSQLDSIYKNAKL-LGL 76 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---------TCEEEEEESCHHHHHHHHHHHGG-GTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHHHh-cCC
Confidence 89999999877653 3 789999999999999999997532 46799999999999999999887 577
Q ss_pred cEEEEeCCCcc----------------------------cccchHHHHh---------------hcCCccEEEEcHHHHH
Q 000174 378 VVGHYCGEMGQ----------------------------DFWDAQRWQR---------------EFDTKQVLVMTAQILL 414 (1931)
Q Consensus 378 ~v~~~~G~~~~----------------------------~~~~~~~w~~---------------~~~~~~IlV~Tpq~L~ 414 (1931)
++..+.|.... +.+....|.. ....++|||+||+.|+
T Consensus 77 ~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~ 156 (540)
T 2vl7_A 77 KTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLF 156 (540)
T ss_dssp CEEEC---------------------------------------------------------CTTGGGCSEEEEETHHHH
T ss_pred cEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhc
Confidence 77666553210 0001112322 1346799999999999
Q ss_pred HHHhcccc-------cccceeEEEEeCCCccc
Q 000174 415 NILRHSII-------KMEAINLLILDECHHAV 439 (1931)
Q Consensus 415 d~L~~~~l-------~l~~i~lLV~DEaH~~~ 439 (1931)
+....+.+ .+....++||||||++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 157 QKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp SHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 86654322 24567899999999993
No 113
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.62 E-value=5.2e-16 Score=158.66 Aligned_cols=105 Identities=24% Similarity=0.268 Sum_probs=87.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHc----Cch----hhhccCCchhHHHHH
Q 000174 1624 SCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKH----KLH----VHLRHGSSALDRQIR 1695 (1931)
Q Consensus 1624 ~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~----gl~----~~l~~~~~~~~~~i~ 1695 (1931)
-+.+||||||||||+++|.+|||.+ |..++|.||++|+.+||.+.+|.++.++ +|. .+++.+.....
T Consensus 10 ~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~---- 84 (138)
T 1u61_A 10 LNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANS---- 84 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCS----
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCccc----
Confidence 5889999999999999999999999 8889999999999999999999999999 887 67776555421
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCch----HHHHHHHHHhHhhccccCCceeEEeeeccCC
Q 000174 1696 DFVKEVLEELLKPGFNSFGLGDCKAPKV----LGDIVESIAGAIFLDSGRDTSVVWQVFQPLL 1754 (1931)
Q Consensus 1696 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~----l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l 1754 (1931)
.+....+.+ +||.|||+|||||+|.|++ .+.+++.+++
T Consensus 85 -------------------~~~~k~~si~~Yr~A~~fEALiGalYLd~g~e--r~~~~i~~~~ 126 (138)
T 1u61_A 85 -------------------GTVPKNTDVQTYRHSTAFEALIGYHHLLNNRE--RLDEIVYKAI 126 (138)
T ss_dssp -------------------SCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHH
T ss_pred -------------------CCCCCCCchhhhhhhhHHHHHHHHHHHCCCHH--HHHHHHHHHH
Confidence 123456789 9999999999999999866 3344544433
No 114
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=174.37 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=115.3
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
....++++|.++++.+.+ +++++.++||||||.++.+++.+...... ......++|++|+++|+.|+++.+...++..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQND-RAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-CCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 345689999999999998 88999999999999888887765444321 1224589999999999999999998876544
Q ss_pred EEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc-cCCCcHH-HHHHHHHhhc
Q 000174 379 VGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA-VKKHPYS-LVMSEFYHTT 455 (1931)
Q Consensus 379 v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~-~~~~~~~-~im~~~~~~~ 455 (1931)
++...|. ... .+... ..+.+|+|+||++|.+++.. .+.++++||+||||++ .. ..+. ..++.+....
T Consensus 137 ~~~~~g~-~~~-----~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~-~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 137 PGKSCGY-SVR-----FESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDIN-TDFLLVVLRDVVQAY 206 (235)
T ss_dssp TTSSEEE-EET-----TEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHH-HHHHHHHHHHHHHHC
T ss_pred cCceEEE-eec-----hhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcc-hHHHHHHHHHHHhhC
Confidence 3221111 000 01111 14688999999999999876 4889999999999986 33 3444 4666666554
Q ss_pred CCCCCcEEEEEeecCCC
Q 000174 456 SKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 456 ~~~~~p~iLgLTATP~~ 472 (1931)
+ ..++++||||+..
T Consensus 207 ~---~~~~il~SAT~~~ 220 (235)
T 3llm_A 207 P---EVRIVLMSATIDT 220 (235)
T ss_dssp T---TSEEEEEECSSCC
T ss_pred C---CCeEEEEecCCCH
Confidence 3 3789999999763
No 115
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.55 E-value=4.3e-15 Score=151.89 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=86.8
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHc----CCc----cceeccccCCCCcc
Q 000174 1399 TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSK----GLQ----SYIQADRFAPSRWA 1470 (1931)
Q Consensus 1399 ~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~----gL~----~~i~~~~f~~~~w~ 1470 (1931)
..|.|||||||||||.++|+.|||.+ |..+||.||.+|+.+||-+.++.++.++ +|. .+++..+-..
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~---- 83 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNAN---- 83 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCC----
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCcc----
Confidence 57999999999999999999999999 8889999999999999999999999999 887 5665432000
Q ss_pred CCCCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccch----hhhHHHHHhhhe
Q 000174 1471 APGVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSKT----LADVVEALIGVY 1546 (1931)
Q Consensus 1471 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~----lADvvEALiGA~ 1546 (1931)
. ....-.... +||+|||||||+
T Consensus 84 ----------------------------------------------------~--~~~~k~~si~~Yr~A~~fEALiGal 109 (138)
T 1u61_A 84 ----------------------------------------------------S--GTVPKNTDVQTYRHSTAFEALIGYH 109 (138)
T ss_dssp ----------------------------------------------------S--SCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------c--CCCCCCCchhhhhhhhHHHHHHHHH
Confidence 0 000001235 999999999999
Q ss_pred eeccCHHHHHHHHhHhh
Q 000174 1547 YVEGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1547 ~l~~G~~~a~~~~~~l~ 1563 (1931)
|+++|.+.+..|+.++-
T Consensus 110 YLd~g~er~~~~i~~~~ 126 (138)
T 1u61_A 110 HLLNNRERLDEIVYKAI 126 (138)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 99999999999987653
No 116
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.54 E-value=6.5e-15 Score=139.87 Aligned_cols=75 Identities=29% Similarity=0.451 Sum_probs=66.7
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++++.|.|+++.++||+|.+.|++.|.|++. .+.|.| +|||+|||.||+.||+.|.+.
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF----IEIGSG---TSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHHHcc
Confidence 3469999999999999999999999999999999999999999753 458999 999999999999999999876
Q ss_pred CC
Q 000174 1930 YS 1931 (1931)
Q Consensus 1930 ~~ 1931 (1931)
.|
T Consensus 86 p~ 87 (88)
T 3adl_A 86 PL 87 (88)
T ss_dssp --
T ss_pred CC
Confidence 43
No 117
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.54 E-value=4.4e-15 Score=137.89 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.|||+||+++++.|.|+++.++||+|.+.|++.|.|++.. .+.|.| +|||+||+.||+.||+.|.+
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~---~~~G~G---~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIK---YTGAAT---RTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEE---EECCCB---SSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEE---EEEecc---CCHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999999999999999999999999999997432 346788 99999999999999999975
No 118
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.53 E-value=5.9e-15 Score=134.61 Aligned_cols=69 Identities=30% Similarity=0.550 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.|++.|||+||+++|+.|.|+++.++||+|.+.|++.|.|++. .+.|.| +|||+||+.||+.||+.|.+
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G~G---~sKK~Aeq~AA~~al~~L~~ 69 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF----VETGSG---TSKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE----EEEeec---CCHHHHHHHHHHHHHHHHhC
Confidence 3899999999999999999999999999999999999999753 458999 99999999999999999863
No 119
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.53 E-value=1.3e-14 Score=138.40 Aligned_cols=77 Identities=29% Similarity=0.438 Sum_probs=69.1
Q ss_pred cCCCCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHH
Q 000174 1846 RKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLEL 1925 (1931)
Q Consensus 1846 ~~~~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~ 1925 (1931)
.++....||++.|||+||+++|..|.|+++.+.||+|.+.|++.|.|++. .+.|.| +|||+||+.||+.||+.
T Consensus 10 ~~~~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~----~~~G~G---~SKK~Aeq~AA~~AL~~ 82 (89)
T 2cpn_A 10 SPQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF----IEIGSG---TSKKLAKRNAAAKMLLR 82 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHH
Confidence 34555689999999999999999999999999999999999999999753 458999 99999999999999999
Q ss_pred Hhhh
Q 000174 1926 LNKW 1929 (1931)
Q Consensus 1926 L~~~ 1929 (1931)
|.+.
T Consensus 83 L~~~ 86 (89)
T 2cpn_A 83 VSGP 86 (89)
T ss_dssp HHSC
T ss_pred HHhh
Confidence 9753
No 120
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.49 E-value=8.8e-15 Score=136.12 Aligned_cols=72 Identities=31% Similarity=0.393 Sum_probs=65.6
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++++ |.|+++.++||+|.+.|++.|.|++ ..+.|.| +|||+||+.||+.||+.|.++
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~----~~~~G~G---~sKK~Aeq~AA~~aL~~L~~l 76 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS----IVTEGEG---NGKKVSKKRAAEKMLVELQKL 76 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT----EEEEECC---CSTTSSSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC----EEEEEee---CCHHHHHHHHHHHHHHHHhhC
Confidence 3469999999999999999 9999999999999999999999964 4568888 999999999999999999764
No 121
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.47 E-value=3e-14 Score=135.77 Aligned_cols=70 Identities=27% Similarity=0.279 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.||++.|||+||++++..|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+||+.||+.||+.|..
T Consensus 6 ~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 6 SGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE----VATGTG---PNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999742 458999 99999999999999999975
No 122
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.47 E-value=2.2e-14 Score=146.21 Aligned_cols=106 Identities=19% Similarity=0.141 Sum_probs=80.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhhChHHHHHHHHHcC--ch----hhhccCCchhHHHHHHH
Q 000174 1624 SCYQRLEFVGDAVLDHLITKHLFFSYTNLPPGRLTDLRAAAVNNENFARVAVKHK--LH----VHLRHGSSALDRQIRDF 1697 (1931)
Q Consensus 1624 ~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~g~Lt~lr~~lv~n~~La~~a~~~g--l~----~~l~~~~~~~~~~i~~~ 1697 (1931)
-+.+|||||||||++++|.+|||.+ |. ++|.||++|+++||.+.+|.++.+++ |. .+++.+....
T Consensus 13 ~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrna~------- 83 (137)
T 2gsl_A 13 YSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKNSN------- 83 (137)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC---------
T ss_pred cCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhccccc-------
Confidence 5889999999999999999999998 88 99999999999999999999999984 32 2222111110
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCCCch----HHHHHHHHHhHhhccccCCceeEEeeeccCCCC
Q 000174 1698 VKEVLEELLKPGFNSFGLGDCKAPKV----LGDIVESIAGAIFLDSGRDTSVVWQVFQPLLDP 1756 (1931)
Q Consensus 1698 ~~~~~~~~~~~~~~~~~~~~~~~~k~----l~D~fEAiiGAiylDsg~~~~~v~~~~~~~l~~ 1756 (1931)
. .+....+++ +||.|||+|||+|+|.|++ .+.+++..++.-
T Consensus 84 ----------~------~~~~k~~si~~Y~~At~fEALiGaLYLd~~~e--rl~~ll~~~~~~ 128 (137)
T 2gsl_A 84 ----------I------KTFPRSCTVMEYKEATALEAIIGAMYLLKKEE--EIKKIINIVIKG 128 (137)
T ss_dssp ----------C------CSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHT
T ss_pred ----------C------CCCCCCCChHHHHHhhHHHHHHHHHHHCCCHH--HHHHHHHHHHHH
Confidence 0 112334564 9999999999999999765 444555555443
No 123
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.47 E-value=4.1e-14 Score=130.51 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=61.2
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.||++.|||+||+++++.|.|+++.+ ||+|.+.|++.|.|++. ..|.|...+|||+||+.||+.||+.|.+
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v~g~-----~~~~G~G~~sKK~Aeq~AA~~al~~L~k 73 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGV-----RYNSLPGFFNRKAAEQSAAEVALRELAK 73 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEETTE-----EEECCSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEECCE-----EEEeeeccCCHHHHHHHHHHHHHHHhhC
Confidence 58999999999999999999999886 99999999999999642 2345522379999999999999999864
No 124
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.46 E-value=3.9e-14 Score=133.77 Aligned_cols=70 Identities=33% Similarity=0.500 Sum_probs=63.2
Q ss_pred chHHHHHHHHHH-----cCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1853 FTRQTLNDICLR-----RNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1853 n~~~~L~e~~~~-----~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
||++.|||+||+ ++++.|.|+++.++||+|.+.|++.|.|++..++ .|.| +|||+||+.||+.||+.|.
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~---~G~G---~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIG---CGKG---PSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECC---CEEE---SSHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEE---EEee---CCHHHHHHHHHHHHHHHHh
Confidence 799999999998 5789999999999999999999999999764344 8899 9999999999999999886
Q ss_pred h
Q 000174 1928 K 1928 (1931)
Q Consensus 1928 ~ 1928 (1931)
.
T Consensus 76 ~ 76 (85)
T 2khx_A 76 F 76 (85)
T ss_dssp S
T ss_pred H
Confidence 4
No 125
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.45 E-value=9.7e-14 Score=134.39 Aligned_cols=73 Identities=27% Similarity=0.429 Sum_probs=66.1
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++++ |.|+++.+.||+|.+.|++.|.|++..++ .|.| +|||+|||.||+.||+.|.+.
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~---~G~G---~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFP---EAKG---RSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCC---CEEE---SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEE---EEee---CCHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999997 89999999999999999999999864444 8999 999999999999999999764
No 126
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.43 E-value=1.2e-13 Score=130.53 Aligned_cols=71 Identities=28% Similarity=0.376 Sum_probs=64.6
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+++ ..|.|+++.+.||+|.+.|++.|.|++ ..+.|.| +|||+|||.||+.||+.|.+.
T Consensus 7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~----~~~~G~G---~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD----ITCTGEG---TSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT----EEEEECS---SCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC----EEEEeee---CCHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999998 799999999999999999999999964 3568899 999999999999999999753
No 127
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.42 E-value=2.8e-13 Score=124.85 Aligned_cols=70 Identities=30% Similarity=0.336 Sum_probs=62.9
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||+ ++.|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|+|.||+.||+.|.++
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~al~~L~~~ 72 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSG---PTKKKAKLHAAEKALRSFVQF 72 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSS----EEEEEE---SSHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCE----EEEeec---CCHHHHHHHHHHHHHHHHhcC
Confidence 35899999999995 78999999999999999999999999753 238899 999999999999999999764
No 128
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=129.80 Aligned_cols=72 Identities=31% Similarity=0.373 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+++ ..|.|+++.++||+|.+.|++.|.|++. .+.|+| +|||+|||.||+.||+.|...
T Consensus 12 ~~kd~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDT----SCTGQG---PSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp -CCCHHHHHHHHHHHTT-CCCEEEEEEEC-----CCEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcC-CCCEEEEEEeECCCCCCcEEEEEEECCE----EEEEEe---CCHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999998 5899999999999999999999999743 458999 999999999999999999753
No 129
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.40 E-value=1.2e-13 Score=140.88 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=82.2
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHHHhCCCCCCchhhHHHhhhhccHHHHHHHHHcC--Cc----cceeccccCCCCccCC
Q 000174 1399 TFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKG--LQ----SYIQADRFAPSRWAAP 1472 (1931)
Q Consensus 1399 ~~nyERLE~LGDs~Lk~~~s~~l~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~g--L~----~~i~~~~f~~~~w~pp 1472 (1931)
..|.+||||||||||.++++.|||.. |. +||.||.+|+.+||-+.++.++.+++ |. .+++..+
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGr--------- 80 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAK--------- 80 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHH---------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhcc---------
Confidence 47999999999999999999999998 88 99999999999999999999999984 22 2221111
Q ss_pred CCCCcccCCCcCCCCccccccchhhhcccCCCcCCCCcCccccccCcccCCCCCccccccc----hhhhHHHHHhhheee
Q 000174 1473 GVLPVFDEDTKDGDSSLFDQEKSVAEDKLGTDKNYNEYEDDDMEDGELEGDSSSYRVLSSK----TLADVVEALIGVYYV 1548 (1931)
Q Consensus 1473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K----~lADvvEALiGA~~l 1548 (1931)
.... ....-... .+||+|||||||+|+
T Consensus 81 -----------------------------------------------na~~--~~~~k~~si~~Y~~At~fEALiGaLYL 111 (137)
T 2gsl_A 81 -----------------------------------------------NSNI--KTFPRSCTVMEYKEATALEAIIGAMYL 111 (137)
T ss_dssp -----------------------------------------------C--C--CSCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cccC--CCCCCCCChHHHHHhhHHHHHHHHHHH
Confidence 0000 00000122 499999999999999
Q ss_pred ccCHHHHHHHHhHhh
Q 000174 1549 EGGKDAANHLMKWIG 1563 (1931)
Q Consensus 1549 ~~G~~~a~~~~~~l~ 1563 (1931)
++|.+.+..|+.++.
T Consensus 112 d~~~erl~~ll~~~~ 126 (137)
T 2gsl_A 112 LKKEEEIKKIINIVI 126 (137)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998764
No 130
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.37 E-value=3.9e-13 Score=130.52 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
.||++.|||+||++ +..|.|++ .+.||+|.+.|++.|.|++. .....|.| +|||+|||.||+.||+.|.+
T Consensus 6 ~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~--~~~~~G~G---~SKK~Aeq~AA~~AL~~L~~ 75 (99)
T 1whq_A 6 SGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEGF--NYAGMGNS---TNKKDAQSNAARDFVNYLVR 75 (99)
T ss_dssp CSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTTC--SCCEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECCe--EEEEEecc---CCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999 99999998 88999999999999999751 23458999 99999999999999999975
No 131
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.35 E-value=7.9e-13 Score=125.61 Aligned_cols=71 Identities=27% Similarity=0.280 Sum_probs=63.7
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhCC
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 1931 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~~ 1931 (1931)
.++++.||||||+++ .|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|||.||+.||+.|.+..|
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~----~~~G~G---~SKK~AEq~AA~~AL~~L~~~~~ 84 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQ----KFQGAG---SNKKVAKAYAALAALEKLFPDTP 84 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHHHhhcCC
Confidence 478899999999998 889999999999999999999999653 347899 99999999999999999987654
No 132
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.34 E-value=1.2e-12 Score=124.73 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=63.0
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCc-eeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAK-RFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~-~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||++++.+ .|+ .+.||+|.+ .|++.|.|++. ....|.| +|||+|||.||+.||+.|.+.
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~--~~~Gp~H~~~~F~~~v~v~g~---~~~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE--QCEPNSELPQRFICKCKIGQT---MYGTGSG---VTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE--ECCCSSSSSCCEEEEEEESSC---EEEEEEE---SSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE--EeeCCCCCCceEEEEEEECCE---EEEEeec---CCHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999999976 898 679999999 79999999753 2348999 999999999999999999876
Q ss_pred CC
Q 000174 1930 YS 1931 (1931)
Q Consensus 1930 ~~ 1931 (1931)
.|
T Consensus 76 ~~ 77 (88)
T 1x48_A 76 PP 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 133
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.34 E-value=6e-13 Score=130.52 Aligned_cols=75 Identities=25% Similarity=0.304 Sum_probs=60.3
Q ss_pred CCccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1849 GTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1849 ~~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
....||++.|||+||+++++.|.|+++.+ ||+|.+.|++.|.|++. ..|.|...+|||+||+.||+.||+.|.+
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v~g~-----~~~~G~G~~SKK~Aeq~AA~~AL~~L~~ 87 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVILDGV-----RYNSLPGFFNRKAAEQSAAEVALRELAK 87 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEETTE-----EEECCSCBSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEECCE-----EEEEeecCCCHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999885 99999999999999642 2345522279999999999999999975
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
.
T Consensus 88 ~ 88 (103)
T 2l2n_A 88 S 88 (103)
T ss_dssp H
T ss_pred c
Confidence 3
No 134
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.33 E-value=1.2e-12 Score=130.45 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecC--CCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTD--KGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~--~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.|||+||++++ .|.|+ +.+.||+|.+.|++.|.|+... ......|.| +|||+|+|.||+.||+.|.+
T Consensus 25 ~~d~Kt~LqE~~Qk~~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G---~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 25 LENAKARLNQYFQKEKI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHG---SNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHHHSCC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEECCC---SSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEEEee---CCHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999 99999 7889999999999999995221 122336777 99999999999999999875
No 135
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.32 E-value=1.8e-12 Score=125.98 Aligned_cols=72 Identities=22% Similarity=0.173 Sum_probs=64.3
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
+..||++.|||+||+++++.|.|+++.+.||+ +.|++.|.|++.. ...|.| +|||+|||.||+.||+.|...
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~---~~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVT---YGSGTA---SSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEE---EEEEEE---SSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEE---EEEeee---CCHHHHHHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999998 9999999997533 348899 999999999999999999753
No 136
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.31 E-value=3.4e-12 Score=123.86 Aligned_cols=70 Identities=34% Similarity=0.397 Sum_probs=62.8
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
...||++.|||+||++ +.|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|+|.||+.||+.|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGT----TYEASG---PSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHhCC
Confidence 4579999999999996 7899999999999999999999999753 237899 99999999999999999963
No 137
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.31 E-value=9.6e-13 Score=133.01 Aligned_cols=97 Identities=26% Similarity=0.510 Sum_probs=75.5
Q ss_pred ccccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccC
Q 000174 1232 AGDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLL 1311 (1931)
Q Consensus 1232 ~~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l 1311 (1931)
.+.|.|.+|+++|+++.|+|.+|.++++|.|+|+..+| .+.||.+||+++||+.|.+++||||.++.-.+..+
T Consensus 25 ~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----~~~T~~eYyk~kY~i~I~~~~QPLL~~~~k~~~~~-- 97 (124)
T 3o7v_X 25 SKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----SEVSFLEYYRKQYNQEITDLKQPMLVSQPKRRRGP-- 97 (124)
T ss_dssp HHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTS-----CEEEHHHHHHHHHCCCCCCSSCCEEEECCC-------
T ss_pred HHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCC-----CeeeHHHHHHHHhCceecCCCcceEEEeeecccCC--
Confidence 45689999999999999999999999999999987655 57899999999999999999999999863211000
Q ss_pred CCccccccccccccccccccceEEEcCCcccccccCChHH
Q 000174 1312 SPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSL 1351 (1931)
Q Consensus 1312 ~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~ 1351 (1931)
.. ...+ .++||||+|.+.+|+.++
T Consensus 98 -------------~~-~~~~--~iyLipELC~ltGltd~~ 121 (124)
T 3o7v_X 98 -------------GG-TLPG--PAMLIPELCYLTGLTDKM 121 (124)
T ss_dssp -------------------C--CEEECGGGEECCCCC---
T ss_pred -------------CC-CCcc--eEEechhheeccCCChHh
Confidence 00 0112 379999999999999876
No 138
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.27 E-value=5.6e-12 Score=115.53 Aligned_cols=67 Identities=30% Similarity=0.273 Sum_probs=59.9
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+| +.|.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|||.||+.||+.|...
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~----~~~G~G---~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQ----FFEGSG---RNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSC----EEEEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCE----EEEEee---CCHHHHHHHHHHHHHHHHHhc
Confidence 368999999994 7899999999999999999999999753 348999 999999999999999999764
No 139
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.27 E-value=1.9e-12 Score=122.41 Aligned_cols=69 Identities=19% Similarity=0.020 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
.||++.|||+||++ ...|.|+++.+ ||+|.+.|++.|.|++. ...+.|.| +|||+|+|.||+.||..|.
T Consensus 6 ~D~KT~LQE~~Q~~-~~~p~Y~v~~~-GpdH~k~F~v~v~i~~~--~~~g~G~G---~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 6 MNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDG--TVLGTGVG---RNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHHHHHTCSS-SSCCEEEECCC-CSSSCCSEEEEEECSSS--CEEEEEEE---SSHHHHHHHHHHHHHHCHH
T ss_pred CCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCE--EEEEEEEe---CCHHHHHHHHHHHHHHHHH
Confidence 58999999999997 47899998765 99999999999999742 03458999 9999999999999998765
No 140
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.22 E-value=1.1e-11 Score=161.68 Aligned_cols=130 Identities=16% Similarity=0.164 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH--
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ-- 374 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~-- 374 (1931)
.++||+|.+++..+.+ +++++.++||+|||++|++|+.. .+.+++|++||++|+.|+.+++..+
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 3799999998886542 78999999999999999999875 1468999999999999999999875
Q ss_pred -cCCcEEEEeCCCccc------------------ccch-----------HHH------------------HhhcCCccEE
Q 000174 375 -TGYVVGHYCGEMGQD------------------FWDA-----------QRW------------------QREFDTKQVL 406 (1931)
Q Consensus 375 -~~l~v~~~~G~~~~~------------------~~~~-----------~~w------------------~~~~~~~~Il 406 (1931)
.++++..+.|..+.- .|.. ..+ ++....++||
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEE
Confidence 367888877743210 0110 011 1223578999
Q ss_pred EEcHHHHHHHHhcccccc-cceeEEEEeCCCcccC
Q 000174 407 VMTAQILLNILRHSIIKM-EAINLLILDECHHAVK 440 (1931)
Q Consensus 407 V~Tpq~L~d~L~~~~l~l-~~i~lLV~DEaH~~~~ 440 (1931)
|+||+.|++...+..+.+ ....++||||||++.+
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 999999999865543332 4677999999999975
No 141
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=113.20 Aligned_cols=69 Identities=29% Similarity=0.229 Sum_probs=60.2
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhhC
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWY 1930 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~~ 1930 (1931)
..||++.|+|++ +.|.|+++.++||+|.+.|++.|.|++. ...|+| +|||+|||.||+.||+.|.+.+
T Consensus 6 ~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 6 GKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEVDGQ----KFQGAG---SNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEECCE----EEEEEE---CCHHHHHHHHHHHHHHHHHccC
Confidence 357888888873 5899999999999999999999999642 447999 9999999999999999999877
Q ss_pred C
Q 000174 1931 S 1931 (1931)
Q Consensus 1931 ~ 1931 (1931)
|
T Consensus 74 ~ 74 (75)
T 3p1x_A 74 P 74 (75)
T ss_dssp C
T ss_pred C
Confidence 6
No 142
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.21 E-value=7.3e-12 Score=130.89 Aligned_cols=99 Identities=24% Similarity=0.497 Sum_probs=73.0
Q ss_pred cccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCC
Q 000174 1233 GDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLS 1312 (1931)
Q Consensus 1233 ~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~ 1312 (1931)
..|.|.+|.++|+++.|.|.+|.|+++|.|.|+..+| .+.||.+||+++||++|.+++||||.++.-.+..+
T Consensus 26 k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg-----~~iT~~eYf~~kY~i~I~~~~qPlL~~~~k~~~~~--- 97 (148)
T 3qir_A 26 KLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDG-----KEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDN--- 97 (148)
T ss_dssp HHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTS-----CEEEHHHHHHHHHCCCCSCTTCCEEEECCTTCCCC---
T ss_pred HHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCC-----CcccHHHHHHHHcCCeecCCCCceEEeecccccCC---
Confidence 4679999999999999999999999999999987665 57899999999999999999999999864221100
Q ss_pred CccccccccccccccccccceEEEcCCcccccccCChHHHH
Q 000174 1313 PRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVR 1353 (1931)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~ 1353 (1931)
.| ....+ .++||||+|.+.+++..+-.
T Consensus 98 ------~~------~~~~~--~~yL~pELC~ltgLtd~~r~ 124 (148)
T 3qir_A 98 ------HG------MLLKG--EILLLPELSFMTGIPEKMKK 124 (148)
T ss_dssp ---------------CCSC--CEEECGGGEECC--------
T ss_pred ------CC------CCccc--eeeecHHHhhhcCCCHHHHh
Confidence 00 00112 37999999999998877643
No 143
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.20 E-value=5.7e-12 Score=123.18 Aligned_cols=71 Identities=18% Similarity=0.018 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..||++.|||+||+. ...|.|.++.+ ||+|.+.|++.|.|++. ...+.|.| +|||+|+|.||+.||..+..
T Consensus 7 ~~D~KT~LQE~~Q~~-~~~P~Y~vv~~-GPdH~k~F~v~V~i~g~--~~~g~G~G---~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYA-SLRLHYVTVKK-PTAVDPNSIVECRVGDG--TVLGTGVG---RNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp CTTHHHHHHHHHCCG-GGCCEEEEEEC-CCSSCCCEEEEEECTTC--CEEEEEEE---SSHHHHHHHHHHHHHHCHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeee-CCCCCCeEEEEEEECCE--EEEEEEEe---CCHHHHHHHHHHHHHHHHHH
Confidence 359999999999995 48899999886 99999999999999742 03458999 99999999999999986653
No 144
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.17 E-value=1.9e-11 Score=120.75 Aligned_cols=68 Identities=28% Similarity=0.296 Sum_probs=60.1
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||+ |.|+++.++||+|.+.|++.|.|++. ...|.| +|||+|||.||+.||+.|...
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~----~~~G~G---~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQ----KYLGQG---RSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTE----EEEEEE---SSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCE----EEEeee---CCHHHHHHHHHHHHHHHHHcC
Confidence 346999999999984 89999999999999999999999743 237999 999999999999999999753
No 145
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.16 E-value=3.4e-11 Score=131.98 Aligned_cols=72 Identities=33% Similarity=0.445 Sum_probs=65.3
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
..||++.|||+||++++. |.|+++.+.||+|.+.|++.|.|++..++ .|.| +|||+||+.||+.||+.|.+.
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~---~G~G---~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFP---EGEG---RSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCC---EEEC---CSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEE---ecCC---CCHHHHHHHHHHHHHHHHhcc
Confidence 469999999999999987 89999999999999999999999764443 8999 999999999999999999754
No 146
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.15 E-value=2.8e-11 Score=127.97 Aligned_cols=99 Identities=25% Similarity=0.470 Sum_probs=76.4
Q ss_pred cccCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCC
Q 000174 1233 GDLEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLS 1312 (1931)
Q Consensus 1233 ~~l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~ 1312 (1931)
+.|.|.+|.++|+++.|.|.+|.++++|.+.|+..+| .+.||++||+++|++.|.+++||||.++...+..
T Consensus 27 ~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g-----~~~T~~eYf~~~Y~i~i~~~~qPlL~~~~~~~~~---- 97 (150)
T 2xfm_A 27 KELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADG-----SEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRG---- 97 (150)
T ss_dssp HHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSS-----CCCCHHHHHHTTCCCCCCCSSSCEEEECSSCTTC----
T ss_pred HHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCC-----ceeeHHHHHHHHcCCccCCCCCCeEEeccccccc----
Confidence 4688999999999999999999999999999996544 5789999999999999999999999986432110
Q ss_pred CccccccccccccccccccceEEEcCCcccccccCChHHHHH
Q 000174 1313 PRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHPLPGSLVRG 1354 (1931)
Q Consensus 1313 ~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~~~~~ 1354 (1931)
. .....+ .++||||+|.+.+++..+..-
T Consensus 98 -----~-------~~~~~~--~~~LppELC~i~~L~d~~rs~ 125 (150)
T 2xfm_A 98 -----P-------GGTLPG--PAMLIPELCYLTGLTDKMRND 125 (150)
T ss_dssp -----C-------SSCSSC--CEEECGGGEEECSTTC-----
T ss_pred -----c-------cccccc--eEEecHHHhccCCCCHHHHhh
Confidence 0 000111 378999999999999887554
No 147
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.09 E-value=1.1e-10 Score=118.16 Aligned_cols=69 Identities=25% Similarity=0.269 Sum_probs=60.0
Q ss_pred ccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHh
Q 000174 1851 QTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLN 1927 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~ 1927 (1931)
..||++.|||+||+++++.|.|+++.+ +|.+.|++.|.|++. ..|.|...+|||+|||.||+.||+.|.
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v~g~-----~~g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTVAEQ-----KYQSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEETTE-----EEEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEECCE-----EEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999998876 899999999999642 245673349999999999999999996
No 148
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.00 E-value=7.5e-10 Score=101.95 Aligned_cols=64 Identities=28% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCChHHHHHHHHhhcCC-ceeEEeccCC----eEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHH
Q 000174 1765 MHPVRELQERCQQQAEG-LEYKASRSGN----LATVEVYIDGVQVGVAQN-PQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~-~~y~~~~~g~----~f~v~V~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~ 1828 (1931)
.||++.|||+||+++.. +.|++..+|+ .|+|.|.|+|..+++|.| .|||+|++.||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 58999999999999886 5999876663 799999999999999999 9999999999999999885
No 149
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=98.98 E-value=3.4e-10 Score=107.13 Aligned_cols=72 Identities=22% Similarity=0.148 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGV-QVGVAQNPQKKMAQKLAARNALAVLKEKETAEA 1835 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~ 1835 (1931)
.+|||+.||||+|+.+..|.|++..+|| .|+|+|.|+|. .+|+|.|.|||+|++.||+.||..|.....+..
T Consensus 5 ~~D~KT~LQE~~Q~~~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~ky~~ 81 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAK 81 (94)
T ss_dssp CHHHHHHHHHHTCSSSSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999976567999876664 79999999999 899999999999999999999999887655443
No 150
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=98.98 E-value=1e-09 Score=105.14 Aligned_cols=70 Identities=27% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1762 TLPMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1762 ~~~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
...+||++.||||||+++..+.|++. ..| +.|+|.|.|+|. +++|.|.|||+|++.||+.||+.|.....
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 85 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGSM 85 (90)
T ss_dssp --CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC----
T ss_pred ccCCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhccc
Confidence 34689999999999998877899974 455 379999999998 69999999999999999999999976543
No 151
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=98.96 E-value=1.8e-09 Score=102.46 Aligned_cols=67 Identities=25% Similarity=0.290 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
...|||+.|||+||+++.. +.|++.. .| +.|+|.|.|+|. +++|.|.|||+|++.||+.||..|...
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 4579999999999999886 6999754 45 479999999998 899999999999999999999999753
No 152
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=98.96 E-value=1.6e-09 Score=98.63 Aligned_cols=62 Identities=29% Similarity=0.385 Sum_probs=55.6
Q ss_pred CChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHH
Q 000174 1766 HPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLK 1828 (1931)
Q Consensus 1766 ~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1828 (1931)
.|++.|||+||+++.. +.|++.. .| +.|+|.|.|+|. +++|.|.|||+|++.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 3899999999999987 5999754 45 479999999998 9999999999999999999999885
No 153
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.95 E-value=1.8e-09 Score=102.75 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=59.2
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----C-eEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----N-LATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~-~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
..|||+.||||||+++..+.|+ ...| + .|+|.|.|+|+.++.|.|.|||+|++.||+.||..|...
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCeeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 3589999999999998888998 5554 3 599999999999999999999999999999999999754
No 154
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=98.94 E-value=1.2e-09 Score=106.96 Aligned_cols=75 Identities=23% Similarity=0.168 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEeccCC----eEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASRSGN----LATVEVYIDGV-QVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKE 1837 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~~g~----~f~v~V~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~ 1837 (1931)
..+||++.||||+|+.+..+.|++...|| .|+|.|.|+|. .+|.|.|.|||+|++.||+.||..+.....+....
T Consensus 6 ~~~D~KT~LQE~~Q~~~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky~~~r 85 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQR 85 (117)
T ss_dssp CCTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHTC--
T ss_pred CCCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999966557999876674 79999999999 89999999999999999999999988777666543
No 155
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=124.34 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=64.5
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
...||++.|||+||++++..|.|+++.+.||+ +.|++.|.|++..+ +.|.| +|||+||+.||+.||..|...
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~---~~G~G---~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTY---GSGTA---SSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEE---EEEEE---SSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEE---eecCC---CCHHHHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999999998 89999999975433 48899 999999999999999999763
No 156
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.92 E-value=2.2e-09 Score=101.37 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+|||+.||||||+++..+.|++.. .| +.|+|.|.|+| .+++|.|.|||+|++.||+.||..|...
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999988667999754 44 47999999999 8899999999999999999999999743
No 157
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=98.91 E-value=2e-09 Score=99.78 Aligned_cols=65 Identities=26% Similarity=0.188 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1765 MHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
.||++.|||+||+++.. +.|++.. .| +.|+|.|.|+|..++.|.|.|||+|++.||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 48999999999999886 5999754 44 379999999999999999999999999999999999864
No 158
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.91 E-value=2e-09 Score=141.35 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCcHHHHHHHHHHhc-----cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc-
Q 000174 302 EQARPYQLDVLEQAKK-----KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT- 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-----~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~- 375 (1931)
.+||+.|.+++..+.+ +++|+.+|||+|||++|++|+...+... +.+++|++||++|+.|+.++++...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-----~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-----KLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-----CCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 5799999999986532 7899999999999999999988776532 4679999999999999999988743
Q ss_pred --CCcEEEEeCC
Q 000174 376 --GYVVGHYCGE 385 (1931)
Q Consensus 376 --~l~v~~~~G~ 385 (1931)
++++..+.|.
T Consensus 77 ~~~~~~~~l~gr 88 (620)
T 4a15_A 77 TMKIRAIPMQGR 88 (620)
T ss_dssp HSCCCEEECCCH
T ss_pred ccCeEEEEEECC
Confidence 5776666553
No 159
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=98.91 E-value=1.7e-09 Score=105.02 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=60.0
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEECC-EEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYIDG-VQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v~g-~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
..|||+.||||||++...+.|++...| +.|+|.|.|+| ..+++|.|.|||+|++.||+.||..|.....
T Consensus 5 ~~d~Kt~LqE~~Qk~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHCCCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 469999999999999445699985445 37999999999 7889999999999999999999999986544
No 160
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.91 E-value=3.2e-09 Score=103.13 Aligned_cols=67 Identities=28% Similarity=0.244 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEec-cC--CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASR-SG--NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~-~g--~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+||++.||||||+++.. +.|++.. .| +.|+|.|.|+|..++.|.|.|||+|++.||+.||..|..
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999887 6999754 45 589999999999999999999999999999999999973
No 161
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.91 E-value=3.1e-09 Score=101.22 Aligned_cols=65 Identities=26% Similarity=0.337 Sum_probs=58.4
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
.+||++.||||||+++.. +.|++.. .| +.|+|.|.|+|. +++|.|.|||+|++.||+.||..|..
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 579999999999999887 5999754 44 479999999998 99999999999999999999999964
No 162
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.91 E-value=1.3e-09 Score=105.42 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=60.7
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEe-ccC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKAS-RSG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~-~~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+.|||+.||||||+++..+.|++. ..| +.|+|.|.|+|+.++.|.|.|||+|++.||+.||..|...
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999988899965 345 4799999999999999999999999999999999999744
No 163
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.89 E-value=3.9e-09 Score=100.56 Aligned_cols=67 Identities=27% Similarity=0.304 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHhhcCC-ceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 000174 1764 PMHPVRELQERCQQQAEG-LEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~-~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
.+|||+.||||||+++.. +.|++.. .| +.|+|.|.|+|. ++.|.|.|||+|++.||+.||..|....
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYKA 77 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhccC
Confidence 369999999999999886 6999754 44 479999999997 8999999999999999999999997543
No 164
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=98.89 E-value=3.1e-09 Score=104.23 Aligned_cols=69 Identities=26% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCCCChHHHHHHHHhhcCC-ceeEEeccCC----eEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHhhh
Q 000174 1763 LPMHPVRELQERCQQQAEG-LEYKASRSGN----LATVEVYIDGVQVGVAQN-PQKKMAQKLAARNALAVLKEKE 1831 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~-~~y~~~~~g~----~f~v~V~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~~~~ 1831 (1931)
..+|||+.|||+||+++.. +.|++..+|+ .|+|.|.|+|..++.|.| .|||+|++.||+.||..|....
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 3579999999999999887 5999876664 799999999999999999 8999999999999999998653
No 165
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=98.89 E-value=1.1e-09 Score=101.82 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+||++.|||+||+++..+.|++.. .| +.|+|.|.|+| .+++|.|.|||+|++.||+.||..|..
T Consensus 5 ~~~d~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 35799999999999998889999754 44 47999999999 889999999999999999999999864
No 166
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=98.84 E-value=2.4e-09 Score=101.02 Aligned_cols=65 Identities=29% Similarity=0.369 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHhh-----cC-CceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1765 MHPVRELQERCQQQ-----AE-GLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1765 ~~P~~~L~e~~~~~-----~~-~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
+|||+.||||||+. +. .+.|++.. .| +.|+|.|+|+|..+++|.|.|||+|++.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence 58999999999973 33 46999754 45 479999999999999999999999999999999988754
No 167
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.83 E-value=7.9e-09 Score=104.66 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=67.9
Q ss_pred ccCCceeEEeeeccCCCCCCCCCCCCCCChHHHHHHHHhhcCC-ceeEEecc--CCeEEEEEEECCEEEEEeec-CCHHH
Q 000174 1739 SGRDTSVVWQVFQPLLDPMVTPETLPMHPVRELQERCQQQAEG-LEYKASRS--GNLATVEVYIDGVQVGVAQN-PQKKM 1814 (1931)
Q Consensus 1739 sg~~~~~v~~~~~~~l~~~i~~~~~~~~P~~~L~e~~~~~~~~-~~y~~~~~--g~~f~v~V~v~g~~~~~g~g-~skk~ 1814 (1931)
+|+....|.....+++...+ ...+|||+.||||||+++.. +.|++... .+.|+|.|.|+|+.++.|.| .|||+
T Consensus 3 ~~~~~~~vi~~~~~~~r~~~---~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~ 79 (128)
T 1whn_A 3 SGSSGSGIIKMAIRFDRRAY---PPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKL 79 (128)
T ss_dssp CCCSSSSSEEECCCCCGGGS---CTTCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHH
T ss_pred CCcCCCCEEeeehhhhhhhc---ccCCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHH
Confidence 34444444333344444322 23569999999999999876 59987654 46899999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHh
Q 000174 1815 AQKLAARNALAVLKE 1829 (1931)
Q Consensus 1815 Ak~~AA~~AL~~L~~ 1829 (1931)
|++.||+.||..|..
T Consensus 80 AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 80 AEQTAAIVCLRSQGL 94 (128)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999963
No 168
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=98.77 E-value=9.2e-09 Score=102.46 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCCChHHHHHHHHhhcCCceeEEeccC----CeEEEEEEE-----CCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASRSG----NLATVEVYI-----DGVQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~~g----~~f~v~V~v-----~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
.+|||+.|||+||+++..+.|++...| +.|+|.|.| +|+.++.|.|.|||+|++.||+.||..|.....
T Consensus 25 ~~d~Kt~LqE~~Qk~~~~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 25 LENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHCCCCCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 359999999999999887799965555 479999999 588999999999999999999999999986543
No 169
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=98.75 E-value=1.8e-08 Score=92.71 Aligned_cols=64 Identities=28% Similarity=0.382 Sum_probs=55.3
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..||++.|||+||+ ...+.|++.. .| +.|+|.|.|+|..+ +|.|.|||+|++.||+.||..|..
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 46899999999995 4456999754 44 47999999999886 999999999999999999999874
No 170
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.74 E-value=3.3e-08 Score=95.92 Aligned_cols=65 Identities=29% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
..+|||+.||||||++ ..+.|++.. .| +.|+|.|.|+|..+ +|.|.|||+|++.||+.||..|..
T Consensus 14 ~~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp CSSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 3579999999999996 457999764 45 47999999999987 999999999999999999999953
No 171
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=98.69 E-value=4.1e-08 Score=93.31 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=56.9
Q ss_pred CCCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 000174 1763 LPMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKE 1829 (1931)
Q Consensus 1763 ~~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1829 (1931)
+..++++.||||||+++ .+.|++.. .| +.|+|.|.|+|..+ .|.|.|||+|++.||+.||..|..
T Consensus 12 ~~~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 12 LTKHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp CCSSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred hccCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 45688999999999988 78999754 44 37999999999885 999999999999999999999964
No 172
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=98.62 E-value=3.8e-08 Score=97.32 Aligned_cols=62 Identities=34% Similarity=0.387 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+|||+.||||||+ +.|++.. .| +.|+|+|.|+|..+ +|.|.|||+|++.||+.||+.|...
T Consensus 36 ~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 36 PKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 57999999999974 8999754 44 47999999999998 9999999999999999999999754
No 173
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=98.56 E-value=7.3e-08 Score=110.01 Aligned_cols=69 Identities=30% Similarity=0.342 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHcCCCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1852 TFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.+|++.|+++++. +..|.|+++.++||+|.+.|++.|.|++. ..+|.| +|||+|||.||+.||+.|...
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~----~~~G~G---~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQ----VFEGSG---PTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTE----EEEEEE---SHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCE----EEEEec---CChHHHHHHHHHHHHHHHHhc
Confidence 4667777777654 57899999999999999999999999653 348999 999999999999999999763
No 174
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=98.49 E-value=2.3e-07 Score=84.85 Aligned_cols=62 Identities=32% Similarity=0.329 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||++.|+|+| ..+.|++.. .| +.|+|.|.|+|.. .+|.|.|||+|++.||+.||..|...
T Consensus 3 ~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 479999999994 457999754 44 4799999999987 49999999999999999999998754
No 175
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=98.41 E-value=4.7e-07 Score=83.45 Aligned_cols=62 Identities=34% Similarity=0.443 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHhhcCCceeEEec-cC----CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 000174 1764 PMHPVRELQERCQQQAEGLEYKASR-SG----NLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEK 1830 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~~y~~~~-~g----~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 1830 (1931)
.+||+++|+|++ ..+.|++.. .| +.|+|.|.|+|..+ .|.|.|||+|++.||+.||..|...
T Consensus 6 ~K~pl~~L~q~~----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 467777777763 467999754 45 47999999999987 9999999999999999999999753
No 176
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.27 E-value=3.7e-06 Score=98.79 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCc
Q 000174 702 VTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRV 781 (1931)
Q Consensus 702 ~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~ 781 (1931)
.|.|+..|-++|... ...++|++||++...+.+.|..+|.. .++....+.| .....+++ -++..+
T Consensus 107 ~SGKf~~L~~LL~~l-~~~~~kVLIfsq~t~~LDilE~~l~~----~~~~y~RlDG-----~~~~~~~k-----~~~~~~ 171 (328)
T 3hgt_A 107 NSGKFSVLRDLINLV-QEYETETAIVCRPGRTMDLLEALLLG----NKVHIKRYDG-----HSIKSAAA-----ANDFSC 171 (328)
T ss_dssp TCHHHHHHHHHHHHH-TTSCEEEEEEECSTHHHHHHHHHHTT----SSCEEEESSS-----CCC------------CCSE
T ss_pred cCccHHHHHHHHHHH-HhCCCEEEEEECChhHHHHHHHHHhc----CCCceEeCCC-----Cchhhhhh-----cccCCc
Confidence 589999999999987 45689999999999999999999987 7899999999 32222211 124566
Q ss_pred eEEEEecccccCCC-----CCCCCEEEEcCCCCCHHHH-HHhhccCCCCC--Cc----EEEEEecCChhH
Q 000174 782 TLLVATSVAEEGLD-----IRQCNVVIRFDLAKTVLAY-IQSRGRARKPG--SD----YILMIERGNLSH 839 (1931)
Q Consensus 782 ~vLVaTdVaeeGlD-----ip~~~lVI~fD~p~s~~~y-iQr~GRa~R~G--s~----~ivlv~~~~~~~ 839 (1931)
.+.+.|+.++-|+| +..++.||.||..||+..- +|++-|++|.| ++ .+-++..+..+|
T Consensus 172 ~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 172 TVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp EEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred eEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 66666888888886 6889999999999999996 99999999984 33 333445554444
No 177
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.53 E-value=0.00022 Score=93.60 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ 374 (1931)
Q Consensus 305 ~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~ 374 (1931)
.+.|+++++.++. +.+++.+++|+|||.+...++..+.... ...+.++++++||..++.|..+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTC--SSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999998 7899999999999955444333332210 123457999999999999988877653
No 178
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=97.42 E-value=0.00011 Score=76.94 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=64.7
Q ss_pred cccCCcEEEccc------CCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeecccc
Q 000174 1233 GDLEGRIVTAAH------SGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSY 1306 (1931)
Q Consensus 1233 ~~l~~~vv~~~~------~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~ 1306 (1931)
..|.|..|.+.| +++.|.|.++.++.++...|+.. | ...|+.+||+++ ++.+.++++|+|.+..-
T Consensus 35 k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~~-g-----~~isv~~Yf~~~-~~~l~~p~lP~l~~g~~-- 105 (143)
T 1vyn_A 35 PFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-G-----KKVTIASYFHSR-NYPLKFPQLHCLNVGSS-- 105 (143)
T ss_dssp HHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEESS-S-----CEEEHHHHHHHT-TCCCSSTTSEEEEEECS--
T ss_pred HHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEcC-C-----CEEEHHHHHHHc-CCCCCCCCCCeEEecCC--
Confidence 457899998888 56789999999988888889753 3 467999999988 99999999999997410
Q ss_pred ccccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1307 CKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1307 ~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
.+ .++||+|+|.+.+
T Consensus 106 -----------------------~k--~~ylP~ElC~i~~ 120 (143)
T 1vyn_A 106 -----------------------IK--SILLPIELCSIEE 120 (143)
T ss_dssp -----------------------SS--EEEEEGGGEEECC
T ss_pred -----------------------CC--CeEeccEeEEccC
Confidence 01 2689999999865
No 179
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.33 E-value=0.00027 Score=93.70 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHHHHhc-cC-EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 302 EQARPYQLDVLEQAKK-KN-TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n-~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
..|.+.|++|+..++. ++ .||.+|.|||||.+.+..|.+++.. +.++|+++||..-|.+..+.+..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEcCchHHHHHHHHHHHh
Confidence 4689999999999987 44 6999999999999888888777652 45799999999999988888865
No 180
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.33 E-value=0.00039 Score=91.63 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=87.2
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
...+.+.|.+++..++. .-++|.+|+|+|||.+....+.+++.. .+.++++++||...+.+..+.+... ++++
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~~-~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQT-GLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS-----SSCCEEEEESSHHHHHHHHHHHHTT-TCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc-----CCCeEEEEeCcHHHHHHHHHHHHhc-CCeE
Confidence 45789999999999887 567999999999999877777665431 3567999999999999988888653 4444
Q ss_pred EEEeCCCcc------cc----------------------------cc---hHHH--------HhhcCCccEEEEcHHHHH
Q 000174 380 GHYCGEMGQ------DF----------------------------WD---AQRW--------QREFDTKQVLVMTAQILL 414 (1931)
Q Consensus 380 ~~~~G~~~~------~~----------------------------~~---~~~w--------~~~~~~~~IlV~Tpq~L~ 414 (1931)
.-+.+.... .. .. ...+ ...+...+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 333221000 00 00 0001 123457889999975432
Q ss_pred HHHhcccccccceeEEEEeCCCcccC
Q 000174 415 NILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 415 d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+..+.-..+++||||||..+..
T Consensus 332 ----~~~l~~~~fd~viIDEAsQ~~e 353 (624)
T 2gk6_A 332 ----DPRLAKMQFRSILIDESTQATE 353 (624)
T ss_dssp ----CGGGTTCCCSEEEETTGGGSCH
T ss_pred ----chhhhcCCCCEEEEecccccCc
Confidence 2223335789999999987754
No 181
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=97.18 E-value=0.00015 Score=73.64 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=63.1
Q ss_pred cccCCcEEEccc------CCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeecccc
Q 000174 1233 GDLEGRIVTAAH------SGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSY 1306 (1931)
Q Consensus 1233 ~~l~~~vv~~~~------~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~ 1306 (1931)
..|.|..|.+.| +++.|.|.++.++-.+...|+.+ | ...|+.+||+++ ++.+.++++|+|.+..
T Consensus 33 k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~~-g-----~~isV~~Yf~~~-~~~l~~p~lP~l~~g~--- 102 (124)
T 3mj0_A 33 PFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEHD-G-----KKVTIASYFHSR-NYPLKFPQLHCLNVGS--- 102 (124)
T ss_dssp HHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEESS-S-----SEEEHHHHHHTT-TCCCSCSSSEEEECCB---
T ss_pred HHhCCeEEEEecccccccCCceEEEEeccCCCccccEEeeC-C-----cEEEHHHHHHHc-CCcccCCCCCeEeecC---
Confidence 356888888777 45789999999888888889863 4 478999999998 9999999999998531
Q ss_pred ccccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1307 CKNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1307 ~~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
..+ ..+||+|+|.+.|
T Consensus 103 ----------------------~~~--~~ylP~Elc~i~~ 118 (124)
T 3mj0_A 103 ----------------------SIK--SILLPIELCSIEE 118 (124)
T ss_dssp ----------------------TTB--CCEECGGGEEEEC
T ss_pred ----------------------CCC--ceEecceeEEECC
Confidence 001 2589999999865
No 182
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.00078 Score=90.63 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
...+.+.|.+|+..++. .-++|.++.|||||.+....+.+++.. .+.++++++||...+.+..+.+... ++++
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-----~~~~ILv~a~tn~A~d~l~~rL~~~-g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-----HKDRILVCAPSNVAVDHLAAKLRDL-GLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSHHHHHHHHHHHHHT-TCCE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEcCcHHHHHHHHHHHHhh-CccE
Confidence 45789999999999988 457999999999998887777666542 2457999999999999998888763 4444
Q ss_pred EEEeCCCc------ccc---------------------------cc---hH--------HHHhhcCCccEEEEcHHHHHH
Q 000174 380 GHYCGEMG------QDF---------------------------WD---AQ--------RWQREFDTKQVLVMTAQILLN 415 (1931)
Q Consensus 380 ~~~~G~~~------~~~---------------------------~~---~~--------~w~~~~~~~~IlV~Tpq~L~d 415 (1931)
.-+.+... ... .. .. .....+...+||++|...+.
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~- 510 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG- 510 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG-
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC-
Confidence 33221100 000 00 00 01123457889999876543
Q ss_pred HHhcccccccceeEEEEeCCCcccC
Q 000174 416 ILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 416 ~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
+..+. ..+++||||||..+..
T Consensus 511 ---~~~L~-~~fd~viIDEA~q~~e 531 (802)
T 2xzl_A 511 ---DKRLD-TKFRTVLIDESTQASE 531 (802)
T ss_dssp ---CTTCC-SCCSEEEETTGGGSCH
T ss_pred ---hHHHh-ccCCEEEEECccccch
Confidence 22232 2899999999988754
No 183
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.11 E-value=0.00093 Score=89.78 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred CCCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCc
Q 000174 300 PEEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYV 378 (1931)
Q Consensus 300 ~~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~ 378 (1931)
....+.+.|.+++..++. .-++|.++.|+|||.+....+.+++.. .+.++++++||..-+.+..+.+.. .+++
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~-----~~~~ilv~a~tn~A~~~l~~~l~~-~g~~ 426 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-----GNGPVLVCAPSNIAVDQLTEKIHQ-TGLK 426 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT-----CSSCEEEEESSHHHHHHHHHHHHT-TTCC
T ss_pred cccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCcEEEEcCcHHHHHHHHHHHHH-hCcc
Confidence 345789999999999988 557999999999998877776655431 346799999999999988888765 3444
Q ss_pred E
Q 000174 379 V 379 (1931)
Q Consensus 379 v 379 (1931)
+
T Consensus 427 v 427 (800)
T 2wjy_A 427 V 427 (800)
T ss_dssp E
T ss_pred e
Confidence 4
No 184
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.71 E-value=0.0022 Score=81.35 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=49.6
Q ss_pred hhcCCCCCCcHHHHHHHHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHH
Q 000174 296 KEKMPEEQARPYQLDVLEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQ 366 (1931)
Q Consensus 296 l~~~~~~~~~~~Q~eai~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q 366 (1931)
..++.+..|++-|++++..++. +.++|.++.|||||.+....+..+... ....+++++||...+..
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~-----~~~~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST-----GETGIILAAPTHAAKKI 89 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCceEEEecCcHHHHHH
Confidence 3447788999999999998753 378999999999998877777666542 22469999999766543
No 185
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.60 E-value=0.0046 Score=80.17 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=49.0
Q ss_pred CCCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHH
Q 000174 301 EEQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAE 369 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~ 369 (1931)
...+++.|++++..++. +.++|.++.|+|||.+...++..+.. .+.++++++||...+....+
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAES------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHH------TTCCEEEEESSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHh------cCCeEEEecCcHHHHHHhHh
Confidence 35789999999999988 77899999999999876665544332 24679999999877665443
No 186
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=95.86 E-value=0.0045 Score=83.46 Aligned_cols=84 Identities=21% Similarity=0.408 Sum_probs=59.7
Q ss_pred cccCCcEEEccc---CCCeEEEEeeccCCCCCCCCCC--CCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccc
Q 000174 1233 GDLEGRIVTAAH---SGKRFYVESIRYEMTAESSFPR--KEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307 (1931)
Q Consensus 1233 ~~l~~~vv~~~~---~~~~y~v~~v~~dltp~s~fp~--~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~ 1307 (1931)
..|.|..|.+.| +++.|.|.++.+.-.....|+. .+| .....|+.+||+++|+++|.+++||+|.+..-
T Consensus 262 k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g---~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~--- 335 (861)
T 4f3t_A 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESG---QTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE--- 335 (861)
T ss_dssp HHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSS---CEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT---
T ss_pred HHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCC---CceeEEHHHHHHHhcCcccCCCCCceEEecCC---
Confidence 457899998778 4578999999763222334642 222 11367999999999999999999999986310
Q ss_pred cccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1308 KNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1308 ~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
.+ .++||||+|.+.+
T Consensus 336 ----------------------~~--~~ylP~Elc~i~~ 350 (861)
T 4f3t_A 336 ----------------------QK--HTYLPLEVCNIVA 350 (861)
T ss_dssp ----------------------TT--TEEEEGGGEEECT
T ss_pred ----------------------CC--CccccceeEEeeC
Confidence 01 1689999999873
No 187
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.84 E-value=0.11 Score=63.39 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..|+|||+..+..+.. +-+++..+-+.|||.++...+...+.. .++..+++++||...+..+.+.++...
T Consensus 162 ~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~----~~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----NKDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS----SSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 5799999999987644 668999999999998877766544332 345679999999988877777776543
No 188
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.64 E-value=0.015 Score=56.67 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=50.5
Q ss_pred ccchHHHHHHHHHHcC-----CCCCcceeecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHH
Q 000174 1851 QTFTRQTLNDICLRRN-----WPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLEL 1925 (1931)
Q Consensus 1851 ~~n~~~~L~e~~~~~~-----~~~p~y~~~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~ 1925 (1931)
..|.++.|+.||++.- -..|.|.+...... ...| |+|++-. ..-...-.|.+++|||.||+.||-.|..+
T Consensus 3 ~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~--~splr~i~g~~~~sk~~AK~sAAf~Ac~~ 77 (102)
T 2kou_A 3 GGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPA--NAPISEIESSLLPSTEAAKKDACLKAVHE 77 (102)
T ss_dssp CSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCT--TCSSCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCC--CCCCCeeeCCccccHHHHHHHHHHHHHHH
Confidence 3578999999999864 25688875433221 2345 5555432 22233567788999999999999999999
Q ss_pred Hhh
Q 000174 1926 LNK 1928 (1931)
Q Consensus 1926 L~~ 1928 (1931)
|.+
T Consensus 78 L~~ 80 (102)
T 2kou_A 78 LHN 80 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 976
No 189
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.53 E-value=0.29 Score=63.78 Aligned_cols=146 Identities=15% Similarity=0.201 Sum_probs=86.5
Q ss_pred CCCcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcC----
Q 000174 302 EQARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTG---- 376 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~---- 376 (1931)
..|+|||+..+..+-. +.+++..+-|+|||.+....+...+.. .++..+++++|+...+....+.++..+.
T Consensus 162 ~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~----~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~ 237 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF----NKDKAVGILAHKGSMSAEVLDRTKQAIELLPD 237 (592)
T ss_dssp CCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHT----SSSCEEEEEESSHHHHHHHHHHHHHHHTTSCT
T ss_pred CcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHHHHHHHhChH
Confidence 5799999999987644 678999999999998776655444432 2456899999999998888877776542
Q ss_pred -CcEEEEeCCCcccccchHHHHhhcCCccEEEE--cHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHh
Q 000174 377 -YVVGHYCGEMGQDFWDAQRWQREFDTKQVLVM--TAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYH 453 (1931)
Q Consensus 377 -l~v~~~~G~~~~~~~~~~~w~~~~~~~~IlV~--Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~ 453 (1931)
++..... +....+. ...+..|.+. .|..+. | .+.+++|+||+|...+. ..++..+..
T Consensus 238 ~~~~~~~~-------~~~~~i~-~~nGs~i~~~s~~~~~lr-----G----~~~~~~iiDE~~~~~~~---~~l~~~~~~ 297 (592)
T 3cpe_A 238 FLQPGIVE-------WNKGSIE-LDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPNF---HDSWLAIQP 297 (592)
T ss_dssp TTSCCEEE-------ECSSEEE-ETTSCEEEEEECCHHHHH-----H----SCCSEEEEETGGGCTTH---HHHHHHHHH
T ss_pred hhcccccc-------CCccEEE-ecCCCEEEEEeCCCCCcc-----C----CCcceEEEehhccCCch---hHHHHHHHH
Confidence 1111000 0000000 0124444433 244443 2 24789999999988541 234343333
Q ss_pred hcCCCCCcEEEEEeecCCC
Q 000174 454 TTSKEKRPSVFGMTASPVN 472 (1931)
Q Consensus 454 ~~~~~~~p~iLgLTATP~~ 472 (1931)
.......+++ .++.||..
T Consensus 298 ~l~~~~~~~i-i~isTP~~ 315 (592)
T 3cpe_A 298 VISSGRRSKI-IITTTPNG 315 (592)
T ss_dssp HHSSSSCCEE-EEEECCCT
T ss_pred HhccCCCceE-EEEeCCCC
Confidence 3322223544 45568864
No 190
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.44 E-value=0.054 Score=70.90 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEE
Q 000174 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA 786 (1931)
Q Consensus 707 ~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa 786 (1931)
..+.+.|...-.....+++||+.+....+.+++.|..+ ..+ .. .+++...+.+++++|+ ++-.||+|
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~~----~~~---~~-----q~~~~~~~~~ll~~f~-~~~~vL~~ 500 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSFE----HMK---EY-----RGIDQKELYSMLKKFR-RDHGTIFA 500 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCSC----CEE---CC-----TTCCSHHHHHHHHHHT-TSCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHhc----chh---cc-----CCCChhHHHHHHHHhc-cCCcEEEE
Confidence 34444444331223557999999999888887766521 111 21 2556678899999999 88889999
Q ss_pred ec--ccccCCCCCC--CCEEEEcCCCC
Q 000174 787 TS--VAEEGLDIRQ--CNVVIRFDLAK 809 (1931)
Q Consensus 787 Td--VaeeGlDip~--~~lVI~fD~p~ 809 (1931)
|. ...||||+|+ +..||...+|.
T Consensus 501 v~~gsf~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 501 VSGGRLSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ETTSCC--------CCCCEEEESSCCC
T ss_pred EecCceeccccCCCCceEEEEEEcCCC
Confidence 85 8999999999 88999988874
No 191
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.5 Score=56.03 Aligned_cols=26 Identities=8% Similarity=-0.075 Sum_probs=21.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
.+++|++++|+|||.++-..+.++-.
T Consensus 46 ~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 46 KLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999998888766543
No 192
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=93.53 E-value=0.078 Score=70.33 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=70.3
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEE
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGH 381 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~ 381 (1931)
..+++-|.+++.. ..+.++|.++.|||||.+.+.-|.+++... ..+..++|+|++|...+.+..+.+...++..
T Consensus 8 ~~Ln~~Q~~av~~-~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~--~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~--- 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA-PRSNLLVLAGAGSGKTRVLVHRIAWLMSVE--NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS--- 81 (647)
T ss_dssp TTCCHHHHHHHTC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTS--CCCGGGEEEEESSHHHHHHHHHHHHHHHCSC---
T ss_pred hcCCHHHHHHHhC-CCCCEEEEECCCCCHHHHHHHHHHHHHHhC--CCChhhEEEEeccHHHHHHHHHHHHHHhccc---
Confidence 5799999999972 348899999999999999988888777632 1233579999999999999999988865321
Q ss_pred EeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHh
Q 000174 382 YCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILR 418 (1931)
Q Consensus 382 ~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~ 418 (1931)
...+.|+|...+...+-
T Consensus 82 --------------------~~~~~v~Tfhs~~~~il 98 (647)
T 3lfu_A 82 --------------------QGGMWVGTFHGLAHRLL 98 (647)
T ss_dssp --------------------CTTCEEEEHHHHHHHHH
T ss_pred --------------------cCCcEEEcHHHHHHHHH
Confidence 13577899988876543
No 193
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.38 E-value=0.24 Score=54.01 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=27.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++.+++|+|||..++-.+.++.. .+.+++++.|..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~------~g~~v~~~~~~~ 41 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL------GKKKVAVFKPKI 41 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH------TTCEEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEeecc
Confidence 578999999999988777665543 245788888873
No 194
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.78 E-value=0.1 Score=64.45 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=54.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
.++.++.|+|||....-.+. ....+||+||++++..|.+.+... |..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~-----------~~~~lVlTpT~~aa~~l~~kl~~~---------~~~------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN-----------FEEDLILVPGRQAAEMIRRRANAS---------GII------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC-----------TTTCEEEESCHHHHHHHHHHHTTT---------SCC-------------
T ss_pred EEEEcCCCCCHHHHHHHHhc-----------cCCeEEEeCCHHHHHHHHHHhhhc---------Ccc-------------
Confidence 57999999999986654321 134799999999999888877532 110
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcc
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHA 438 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~ 438 (1931)
....+-|.|.+.++ +.......-..++||||||-.+
T Consensus 211 -~~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 -VATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -CCCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGGS
T ss_pred -ccccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcccC
Confidence 01122367887765 2222222335899999999855
No 195
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.76 E-value=0.41 Score=51.80 Aligned_cols=38 Identities=26% Similarity=0.232 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhc----------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK----------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 305 ~~~Q~eai~~~l~----------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.+.|.+++..+.. +.+++.+++|+|||..+-.++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678888887752 4589999999999988877665543
No 196
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.39 E-value=0.74 Score=56.19 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHh------c--cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAK------K--KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 305 ~~~Q~eai~~~l------~--~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+.-+.+.+..++ . .++++.+++|+|||..+-..+.....
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554443 1 67999999999999888777665433
No 197
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.99 E-value=0.14 Score=58.19 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=19.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+++++++++|+|||..+-.++...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999887766544
No 198
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=91.75 E-value=0.17 Score=67.31 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=68.3
Q ss_pred CCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEE
Q 000174 303 QARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHY 382 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~ 382 (1931)
.+++-|++++... .++++|.+..|||||.+.+.-+.+++... .-...++|+|+.|+..+.+..+.+...++..
T Consensus 2 ~L~~~Q~~av~~~-~~~~lV~AgaGSGKT~~l~~ri~~ll~~~--~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~---- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV-TGPCLVLAGAGSGKTRVITNKIAHLIRGC--GYQARHIAAVTFTNKAAREMKERVGQTLGRK---- 74 (673)
T ss_dssp CCCHHHHHHHHCC-SSEEEECCCTTSCHHHHHHHHHHHHHHHH--CCCGGGEEEEESSHHHHHHHHHHHHHHSCTT----
T ss_pred CCCHHHHHHHhCC-CCCEEEEeCCCCChHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHcCcc----
Confidence 5899999999753 57889999999999999888887777642 1234569999999999998888888765321
Q ss_pred eCCCcccccchHHHHhhcCCccEEEEcHHHHHHHH
Q 000174 383 CGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 383 ~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L 417 (1931)
....+-|+|...|...+
T Consensus 75 ------------------~~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 75 ------------------EARGLMISTFHTLGLDI 91 (673)
T ss_dssp ------------------TTTTSEEEEHHHHHHHH
T ss_pred ------------------cccCCEEEeHHHHHHHH
Confidence 01246788988887543
No 199
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.64 E-value=0.18 Score=55.30 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=27.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++.+++|+|||..++-.+.+... .+.+++++.|..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI------AKQKIQVFKPEI 46 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH------TTCCEEEEEEC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEecc
Confidence 478999999999888877766543 356799998873
No 200
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.22 E-value=0.28 Score=54.44 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++++++|+|||..++-.+.+... .+.+++|+.|..
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~------~g~kVli~k~~~ 66 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQF------AKQHAIVFKPCI 66 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEECC-
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH------CCCEEEEEEecc
Confidence 358999999999988887776644 356799999875
No 201
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.65 E-value=0.15 Score=57.29 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=51.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE 399 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~ 399 (1931)
+++.++||+|||..++-.+.+... .+.+++++.|...= .-...+...+|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~------~g~kVli~~~~~d~--r~~~~i~srlG~---------------------- 64 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY------ADVKYLVFKPKIDT--RSIRNIQSRTGT---------------------- 64 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCCG--GGCSSCCCCCCC----------------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh------cCCEEEEEEeccCc--hHHHHHHHhcCC----------------------
Confidence 578899999999888877766544 24568888776410 000000000110
Q ss_pred cCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 400 FDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 400 ~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
....+.+.+...++..+... +.-.++++||+||++.+..
T Consensus 65 -~~~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~~ 103 (223)
T 2b8t_A 65 -SLPSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFDD 103 (223)
T ss_dssp -SSCCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSCT
T ss_pred -CccccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCcH
Confidence 11123345556666655432 2234689999999998654
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.83 E-value=1.6 Score=53.93 Aligned_cols=119 Identities=17% Similarity=0.099 Sum_probs=66.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQ 397 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv--PT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~ 397 (1931)
+++++++|+|||..+..++..+.. .+.+++++. +.+.-+.++...+....++.+... ....
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~------~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~--~~~~--------- 162 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK------RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGE--PNNQ--------- 162 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH------TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECC--TTCS---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEEecCccchhHHHHHHHHHHhcCCceeec--cccC---------
Confidence 578899999999888777665533 134466555 334434444444555455543321 1111
Q ss_pred hhcCCccEEEEcHHH-HHHHHhcccccccceeEEEEeCCCccc--CCCcHHHHHHHHHhhcCCCCCcEEEEEeecC
Q 000174 398 REFDTKQVLVMTAQI-LLNILRHSIIKMEAINLLILDECHHAV--KKHPYSLVMSEFYHTTSKEKRPSVFGMTASP 470 (1931)
Q Consensus 398 ~~~~~~~IlV~Tpq~-L~d~L~~~~l~l~~i~lLV~DEaH~~~--~~~~~~~im~~~~~~~~~~~~p~iLgLTATP 470 (1931)
.|.. +.+.+.. ......++||+|++-+.. .+..+...+..+..... ...-+|.+.|+-
T Consensus 163 -----------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~--pd~vlLVlDa~~ 223 (433)
T 3kl4_A 163 -----------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK--PDDVILVIDASI 223 (433)
T ss_dssp -----------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC--CSEEEEEEEGGG
T ss_pred -----------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC--CcceEEEEeCcc
Confidence 1211 2223332 334578999999998765 44445555555554432 235567788874
No 203
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.56 E-value=0.83 Score=54.56 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=20.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
..+++++|+|+|||..+-.++....
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4699999999999988877765543
No 204
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=89.08 E-value=0.52 Score=63.04 Aligned_cols=71 Identities=10% Similarity=0.060 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc
Q 000174 302 EQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT 375 (1931)
Q Consensus 302 ~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~ 375 (1931)
..|++-|++++.. ..+.++|.+..|||||.+.+.-|.+++... .-....+|+|+.|+..+.+..+.+...+
T Consensus 10 ~~Ln~~Q~~av~~-~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~--~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT-TEGPLLIMAGAGSGKTRVLTHRIAYLMAEK--HVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC-CSSCEEEEECTTSCHHHHHHHHHHHHHHTT--CCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHHHHHHHhc--CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4699999999975 348899999999999999988888777632 1234569999999999998888887764
No 205
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.73 E-value=2.3 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+++|+|||..+-..+..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999998877665544
No 206
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=88.18 E-value=0.041 Score=72.23 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=48.4
Q ss_pred CCCeEEEEeeccCCCCCC--CC---CCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccccccCCCcccccc
Q 000174 1245 SGKRFYVESIRYEMTAES--SF---PRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYCKNLLSPRFEHSE 1319 (1931)
Q Consensus 1245 ~~~~y~v~~v~~dltp~s--~f---p~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~~n~l~~~~~~~~ 1319 (1931)
|.++|.+.. ++|.+|.| .| ....|- .-.++.+||..+|++ .+.+||||..+...+ . .
T Consensus 194 n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~y~~~y~i--~d~~QPllvs~~~~~-~---------~- 255 (771)
T 1u04_A 194 CFEEYTKKP-KLDHNQEIVKYWYNYHIERYW----NTPEAKLEFYRKFGQ--VDLKQPAILAKFASK-I---------K- 255 (771)
T ss_dssp CBCTTSSCB-CEECCHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHCS--CCTTSCEEEEEESCC-------------
T ss_pred ccceeecCC-ccccCCCChhheeceeecCCC----CCcchhHHHHHhcCc--CcCCCCeEEecchhh-c---------c-
Confidence 556676666 66777776 44 322100 123566777799995 889999999765322 0 0
Q ss_pred ccccccccccccceEEEcCCcccccccCChH
Q 000174 1320 EQEGEGEEILDKTYYVFLPPELCFIHPLPGS 1350 (1931)
Q Consensus 1320 ~~~~~~~~~~~k~~~~~L~Pelc~v~~lp~~ 1350 (1931)
...++ .++|+||+|.+.+.+..
T Consensus 256 -------~~~~~--~i~LiPELc~~TG~~~~ 277 (771)
T 1u04_A 256 -------KNKNY--KIYLLPQLVVPTYNAEQ 277 (771)
T ss_dssp ----------CC--CEEECTTTEEEEEEGGG
T ss_pred -------CCCCc--eeeechHhhhhcCchhh
Confidence 00111 37899999999886544
No 207
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.66 E-value=0.39 Score=53.76 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=27.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++++++|+|||..++-.+.+... .+.+++|+-|..
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~------~g~kvli~kp~~ 57 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQI------AQYKCLVIKYAK 57 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT------TTCCEEEEEETT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH------CCCeEEEEeecC
Confidence 478999999999888877665533 356799998865
No 208
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.37 E-value=1.9 Score=46.37 Aligned_cols=25 Identities=36% Similarity=0.400 Sum_probs=20.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++++|+|||..+-..+..+.
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999998877665543
No 209
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=86.51 E-value=1.5 Score=52.70 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHhc--------cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--------KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--------~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
+.|+|.+++..+.+ ...++++|.|+|||..+...+..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 57899988877653 2279999999999999988877654
No 210
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=86.28 E-value=0.69 Score=65.64 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHHHHhccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEE
Q 000174 301 EEQARPYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 301 ~~~~~~~Q~eai~~~l~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
..++++-|.+++..- .++++|.+.-|||||.+.+.-|.+++......-...++++|++|+..+....+.+...++-...
T Consensus 8 ~~~~t~eQ~~~i~~~-~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST-GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp --CCCHHHHHHHHCC-SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC-CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 367999999998765 6899999999999999988877666653211113457999999999999888888775421100
Q ss_pred EEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhccccccc--ceeEEEEeCCC
Q 000174 381 HYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKME--AINLLILDECH 436 (1931)
Q Consensus 381 ~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~--~i~lLV~DEaH 436 (1931)
. ..+ ...|.+.+ .-.++-|+|...+...+-+.+.... .-++-|+||..
T Consensus 87 ----~-~~~---~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~~~f~~~d~~~ 137 (1232)
T 3u4q_A 87 ----Q-RPG---SLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLDPGFRIADQTE 137 (1232)
T ss_dssp ----H-STT---CHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCCTTCEECCHHH
T ss_pred ----c-Ccc---hHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCCCCCeeCCHHH
Confidence 0 000 01222221 2345678999888765544321111 11233777754
No 211
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=86.09 E-value=1.7 Score=56.06 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEE
Q 000174 707 QSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVA 786 (1931)
Q Consensus 707 ~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVa 786 (1931)
..+.+.|.+.-.....+++||+++....+.+++. .+ ....+.+. +++ +.++++.|+...-.||+|
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~-------~~-~~v~~q~~----~~~---~~~~~~~~~~~~~~vl~~ 443 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR-------IS-LPKYVESE----DSS---VEDLYSAISANNKVLIGS 443 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-------CC-SSEEECCS----SCC---HHHHHHHTTSSSSCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-------cC-CcEEEcCC----CCC---HHHHHHHHHhcCCeEEEE
Confidence 4455555443223456899999999888888751 12 22333341 233 356888896444479999
Q ss_pred e--cccccCCCCC-----CCCEEEEcCCCC
Q 000174 787 T--SVAEEGLDIR-----QCNVVIRFDLAK 809 (1931)
Q Consensus 787 T--dVaeeGlDip-----~~~lVI~fD~p~ 809 (1931)
| ....||||+| .|..||...+|.
T Consensus 444 v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 444 VGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred EecceecccccccccCCcceeEEEEEcCCC
Confidence 9 6899999999 488999877664
No 212
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.05 E-value=1.6 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
+.+++.+++|+|||..+-..+..+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999988777665433
No 213
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=85.96 E-value=3 Score=51.58 Aligned_cols=55 Identities=18% Similarity=0.110 Sum_probs=35.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcEE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv--PT~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
+++++++|+|||..+..++..+.. .+.+++++. |-++-+..|...+....++.+.
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~------~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK------RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH------CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 678999999999888887765533 234566655 4445455555555555565543
No 214
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.84 E-value=3.4 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=18.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++|.+++|+|||..+-..+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999887665543
No 215
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.37 E-value=0.62 Score=55.14 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=20.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++|+|+|||.++-.++..+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999998887766543
No 216
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.77 E-value=1.3 Score=52.48 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++++|+|||..+..+.....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999888776655
No 217
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.52 E-value=2.4 Score=52.84 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=20.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..+++++++|+|||..+-.+...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999888776655443
No 218
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=84.35 E-value=3.5 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.7
Q ss_pred cCEEE--EeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIA--FLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il--~~~TGsGKTliall~i~~~ 341 (1931)
..++| .++.|+|||..+-..+...
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 45778 8999999998877666544
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.32 E-value=1.8 Score=49.89 Aligned_cols=21 Identities=43% Similarity=0.480 Sum_probs=18.2
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
.++++.+++|+|||..+-.+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 789999999999998776654
No 220
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=83.91 E-value=0.64 Score=50.68 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=26.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.++++++|||||...+-.+.+.... +.+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~------~~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA------QYKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT------TCCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc------CCeEEEEccc
Confidence 5789999999997777666665442 4668999886
No 221
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.71 E-value=2.6 Score=48.72 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=19.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++++++|+|+|||..+-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999988776553
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.65 E-value=0.77 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.290 Sum_probs=18.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+.+++.+++|+|||..+-++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999987666554
No 223
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.61 E-value=2.9 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+++++|+|+|||..+-.++.+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 56899999999999988776543
No 224
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.19 E-value=1 Score=49.89 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=25.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
.++.+++|+|||...+-.+.+... .+.+++|+.|..
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~------~g~kvli~kp~~ 66 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIY------AKQKVVVFKPAI 66 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH------TTCCEEEEEEC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCceEEEEecc
Confidence 478999999999776666554433 245689999864
No 225
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.91 E-value=1.9 Score=51.61 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=60.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEE-EeCCCcccccch-HHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGH-YCGEMGQDFWDA-QRW 396 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~-~~G~~~~~~~~~-~~w 396 (1931)
+||++++|+|||..++-.+.+... .+.+|+|+...-. ..|....+.. ..++.... ..|......|.. ...
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLEMS-AEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESSSC-HHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 789999999999988887776654 2467888876533 3455444432 22322111 123333222221 111
Q ss_pred HhhcCCccEEEE-----cHHHHHHHHhccccccc-ceeEEEEeCCCcccC
Q 000174 397 QREFDTKQVLVM-----TAQILLNILRHSIIKME-AINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~-~i~lLV~DEaH~~~~ 440 (1931)
...+....+.|. |+..|...+.+- ..-. .+++||+|-.+.+..
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l-~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKL-KSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHH-HHHCTTEEEEEEEEEECCCT
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHH-HHhcCCCCEEEEechHHhcC
Confidence 111223445553 344444444331 1122 689999999988864
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.65 E-value=2.3 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++++++|+|+|||..+-.++.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 6799999999999988766543
No 227
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.15 E-value=3.9 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++++|+|+|||..+-.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999988776654
No 228
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.08 E-value=1.6 Score=58.24 Aligned_cols=98 Identities=19% Similarity=0.223 Sum_probs=74.0
Q ss_pred CCCHHHHHHHH-HHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 701 KVTPKVQSLIK-ILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 701 ~~s~Kv~~Li~-lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
..+.|-....- ++... ..+.+++|.++++.-|..+++.+.......++++..++| +++..+|..+++..++|
T Consensus 398 TGSGKTlvall~il~~l--~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G-----~~~~~~r~~~~~~l~~g 470 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNY--EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIG-----ATTPSEKEKIKSGLRNG 470 (780)
T ss_dssp SSSSHHHHHHHHHHHHH--HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCS-----SSCHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHH--HcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeC-----CCCHHHHHHHHHHHhcC
Confidence 45667644333 22222 135799999999999888887776532113689999999 88999999999999999
Q ss_pred CceEEEEec-ccccCCCCCCCCEEEEc
Q 000174 780 RVTLLVATS-VAEEGLDIRQCNVVIRF 805 (1931)
Q Consensus 780 ~~~vLVaTd-VaeeGlDip~~~lVI~f 805 (1931)
+.+|+|+|. .+.+.+++.++.+||.=
T Consensus 471 ~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 471 QIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CCCEEEECHHHHhhhhhccCCceEEec
Confidence 999999995 55667889999998853
No 229
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.02 E-value=1.4 Score=41.97 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHcCCCC-C-ccee-ecccCCCCCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHHHHHHHHHhh
Q 000174 1852 TFTRQTLNDICLRRNWPM-P-LYRC-VREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 1928 (1931)
Q Consensus 1852 ~n~~~~L~e~~~~~~~~~-p-~y~~-~~~~Gp~h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA~~~l~~L~~ 1928 (1931)
..|++.|+...|+---.. . .|.+ ...+|+ ++=.|++++.=. -.+.++|.| +.|-+|+++||..|++.|++
T Consensus 17 p~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~---k~K~~tl~l~WP-~~mef~a~G---~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 17 PQPKNLLNSVIGRALGISHAKDKLVYVHTNGP---KKKKVTLHIKWP-KSVEVEGYG---SKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHHHEEEEECCSS---SSEEEEEEECSS-SCEEEEEEE---SSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCchhhheeEEeecCC---ceeEEEEEecCC-CcEEEEeec---cchHHHHHHHHHHHHHHHHH
Confidence 478999987655432111 1 1211 112333 233455555423 344779999 99999999999999999987
Q ss_pred h
Q 000174 1929 W 1929 (1931)
Q Consensus 1929 ~ 1929 (1931)
+
T Consensus 90 L 90 (119)
T 2db2_A 90 W 90 (119)
T ss_dssp H
T ss_pred c
Confidence 4
No 230
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.28 E-value=3.4 Score=49.17 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+++++++|+|+|||..+-.++.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999988766543
No 231
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=80.88 E-value=1.2 Score=57.78 Aligned_cols=112 Identities=20% Similarity=0.210 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcE
Q 000174 303 QARPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 303 ~~~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.+|.-|.+++..++. .-.+|.++-|.|||.+..+.+..+. ..++|.+|+..=+.. +.++.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---------~~~~vtAP~~~a~~~----l~~~~~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---------GRAIVTAPAKASTDV----LAQFAGE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---------SCEEEECSSCCSCHH----HHHHHGG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---------hCcEEECCCHHHHHH----HHHHhhC--
Confidence 689999999999887 4468999999999977777665432 136999999765442 2222210
Q ss_pred EEEeCCCcccccchHHHHhhcCCccEEEEcHHHHHHHHhcccccccceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCC
Q 000174 380 GHYCGEMGQDFWDAQRWQREFDTKQVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTSKEK 459 (1931)
Q Consensus 380 ~~~~G~~~~~~~~~~~w~~~~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~ 459 (1931)
.|-+..|..+. . ...+.++||||||=.+-- .+++.+...
T Consensus 240 ------------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp~-----pll~~ll~~----- 278 (671)
T 2zpa_A 240 ------------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIPA-----PLLHQLVSR----- 278 (671)
T ss_dssp ------------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSCH-----HHHHHHHTT-----
T ss_pred ------------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCCH-----HHHHHHHhh-----
Confidence 13334565543 1 244689999999976632 233344431
Q ss_pred CcEEEEEeecCC
Q 000174 460 RPSVFGMTASPV 471 (1931)
Q Consensus 460 ~p~iLgLTATP~ 471 (1931)
-+ ++.||.|..
T Consensus 279 ~~-~v~~~tTv~ 289 (671)
T 2zpa_A 279 FP-RTLLTTTVQ 289 (671)
T ss_dssp SS-EEEEEEEBS
T ss_pred CC-eEEEEecCC
Confidence 13 466677754
No 232
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=80.11 E-value=3.5 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=18.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++++++|+|||.++-.++.
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999988776643
No 233
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.97 E-value=4.1 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=18.1
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
.++++.+++|+|||..+-.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 479999999999999877654
No 234
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=79.91 E-value=5.6 Score=46.97 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~ 341 (1931)
++++.+|+|+|||..+-..+..+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 59999999999999887766554
No 235
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=79.49 E-value=4.7 Score=42.55 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=53.0
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhccccccccee
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
..++||.|+++.-+.+.++.+.. .++.+..++|++..... ......| ...+|+|+| +.+..| +.+..++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~r--~~~~~~f~~g~~~vlv~T-----~~~~~G-ld~~~~~ 105 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD-LGYPCDKIHGGMIQEDR--FDVMNEFKRGEYRYLVAT-----DVAARG-IDIENIS 105 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHH--HHHHHHHHTTSCSEEEEC-----GGGTTT-CCCSCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHH--HHHHHHHHcCCCeEEEEC-----ChhhcC-CchhcCC
Confidence 34699999999999998888876 48899999999865332 1112222 367899999 233344 5677888
Q ss_pred EEEEeC
Q 000174 429 LLILDE 434 (1931)
Q Consensus 429 lLV~DE 434 (1931)
+||.-.
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888744
No 236
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.25 E-value=1.7 Score=51.29 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=18.1
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
.++++.+++|+|||.++-.+.
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHH
Confidence 789999999999998876653
No 237
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.75 E-value=6.3 Score=37.71 Aligned_cols=73 Identities=15% Similarity=0.012 Sum_probs=48.5
Q ss_pred CCCChHHHHHHHHhhcCCc---eeE--EeccC-CeEEEEEEE--CCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhhhh
Q 000174 1764 PMHPVRELQERCQQQAEGL---EYK--ASRSG-NLATVEVYI--DGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEA 1835 (1931)
Q Consensus 1764 ~~~P~~~L~e~~~~~~~~~---~y~--~~~~g-~~f~v~V~v--~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~ 1835 (1931)
.-+|++.|+...|..-... +|. ...+| ..-.|++.+ -...-.+|.|..|.+|+++||..|+.+|+..+.+..
T Consensus 16 Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lgll~p 95 (119)
T 2db2_A 16 FPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGP 95 (119)
T ss_dssp CSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcCccCC
Confidence 4589999998877532211 221 12233 233444443 455557889999999999999999999998866554
Q ss_pred h
Q 000174 1836 K 1836 (1931)
Q Consensus 1836 ~ 1836 (1931)
.
T Consensus 96 ~ 96 (119)
T 2db2_A 96 R 96 (119)
T ss_dssp T
T ss_pred C
Confidence 3
No 238
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.23 E-value=3.6 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=18.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++++++|+|||.++-.++.
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998877654
No 239
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.06 E-value=4.5 Score=48.85 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+++++++|+|+|||..+-.++.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999988776654
No 240
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=76.89 E-value=5.1 Score=42.78 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhccccccccee
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
...++||.|+++..+...+..+.. .++.+..++|++...... ...... -...+|+|+| +.+..| +.+..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~g~~~~~~R~-~~~~~f~~g~~~vLvaT-----~~~~~G-id~~~~~ 104 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ-DGHQVSLLSGELTVEQRA-SIIQRFRDGKEKVLITT-----NVCARG-IDVKQVT 104 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-TTCCEEEECSSCCHHHHH-HHHHHHHTTSCSEEEEC-----CSCCTT-TCCTTEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHH-HHHHHHHcCCCeEEEEe-----cchhcC-CCcccCC
Confidence 356899999999999988888876 488999999998754322 111111 1367899999 233333 5778899
Q ss_pred EEEEeC
Q 000174 429 LLILDE 434 (1931)
Q Consensus 429 lLV~DE 434 (1931)
+||.=.
T Consensus 105 ~Vi~~d 110 (175)
T 2rb4_A 105 IVVNFD 110 (175)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888533
No 241
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.86 E-value=9.5 Score=45.13 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHHHHHHHhc----cCE-EEEeCCCchHHHHHHHHHH
Q 000174 307 YQLDVLEQAKK----KNT-IAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 307 ~Q~eai~~~l~----~n~-Il~~~TGsGKTliall~i~ 339 (1931)
...+.+..++. .++ ++.+|+|+|||..+-.+..
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHH
Confidence 33444444443 244 5667799999988776643
No 242
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.67 E-value=6.6 Score=49.27 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=58.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCc--cccc----
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMG--QDFW---- 391 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~--~~~~---- 391 (1931)
....+.+-||||||++...++.. .++++|||+|+..++.|++++++.+++-.|..+-.-.. .+..
T Consensus 15 ~~~~l~g~~gs~ka~~~a~l~~~---------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~ 85 (483)
T 3hjh_A 15 EQRLLGELTGAACATLVAEIAER---------HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ 85 (483)
T ss_dssp CEEEEECCCTTHHHHHHHHHHHH---------SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCH
T ss_pred CeEEEeCCCchHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCCh
Confidence 45788999999999987766532 13459999999999999999999988655444332100 0000
Q ss_pred -----chHHHHhhc-CCccEEEEcHHHHHH
Q 000174 392 -----DAQRWQREF-DTKQVLVMTAQILLN 415 (1931)
Q Consensus 392 -----~~~~w~~~~-~~~~IlV~Tpq~L~d 415 (1931)
+-.....+. ....|||+|...|+.
T Consensus 86 ~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 86 DIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 111122222 245699999998873
No 243
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.60 E-value=8.2 Score=46.97 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=19.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+|+++|+|+|||+.+-.++.+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 78999999999999987776543
No 244
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.41 E-value=5.6 Score=46.44 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=18.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+.+++.+|+|+|||..+-.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5789999999999988776544
No 245
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.18 E-value=11 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=19.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+.++|.++.|+|||..+-..+..+
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999998877665543
No 246
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=75.68 E-value=8 Score=42.08 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=52.7
Q ss_pred cEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 352 MLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 352 ~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
.++||.|+++.-+...++.++.. ++.+..++|++...... .....| ...+|+|+| +.+..| +.+..+++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~-g~~~~~lhg~~~~~~R~--~~l~~F~~g~~~vLvaT-----~~~~~G-ldi~~v~~ 125 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK-GVEAVAIHGGKDQEERT--KAIEAFREGKKDVLVAT-----DVASKG-LDFPAIQH 125 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH-TCCEEEECTTSCHHHHH--HHHHHHHHTSCSEEEEC-----HHHHTT-CCCCCCSE
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHH--HHHHHHhcCCCEEEEEc-----CchhcC-CCcccCCE
Confidence 46999999999999988888764 88999999998653311 111122 367899999 233444 56778888
Q ss_pred EEEeC
Q 000174 430 LILDE 434 (1931)
Q Consensus 430 LV~DE 434 (1931)
||.=+
T Consensus 126 VI~~d 130 (191)
T 2p6n_A 126 VINYD 130 (191)
T ss_dssp EEESS
T ss_pred EEEeC
Confidence 88733
No 247
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=75.09 E-value=6.7 Score=41.39 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=53.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhccccccccee
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
..++||.|+++.-+...+..++. .++.+..++|++..... ......+ ...+|+|+| +.+..| +.+..++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r--~~~~~~f~~g~~~vlv~T-----~~~~~G-~d~~~~~ 100 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN-DKFTVSAIYSDLPQQER--DTIMKEFRSGSSRILIST-----DLLARG-IDVQQVS 100 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHH--HHHHHHHHTTSCSEEEEE-----GGGTTT-CCCCSCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEECCCCHHHH--HHHHHHHHcCCCEEEEEc-----ChhhcC-CCcccCC
Confidence 45699999999999988888876 47889999999875432 1111222 367899999 233344 5677888
Q ss_pred EEEEeCC
Q 000174 429 LLILDEC 435 (1931)
Q Consensus 429 lLV~DEa 435 (1931)
+||.-..
T Consensus 101 ~Vi~~~~ 107 (165)
T 1fuk_A 101 LVINYDL 107 (165)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8887443
No 248
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=74.68 E-value=7.6 Score=42.00 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=45.3
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhccccccccee
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
...++||.|+++.-+...++.++. .++.+..++|++....... ..... -...+|+|+| .. +..| +.+..++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~-~g~~~~~lhg~~~~~~r~~-~~~~f~~g~~~vLvaT-~~----~~~G-ldi~~~~ 116 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH-EGYACTSIHGDRSQRDREE-ALHQFRSGKSPILVAT-AV----AARG-LDISNVK 116 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH-TTCCEEEEC--------CH-HHHHHHHTSSSEEEEE-C-----------CCCSBS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH-cCCceEEEeCCCCHHHHHH-HHHHHHcCCCeEEEEc-Ch----hhcC-CCcccCC
Confidence 356799999999999988888876 4889999999987543222 11111 1467899999 32 2333 4677788
Q ss_pred EEEE
Q 000174 429 LLIL 432 (1931)
Q Consensus 429 lLV~ 432 (1931)
+||.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 249
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=74.23 E-value=7.2 Score=42.49 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=28.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV 358 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv 358 (1931)
.++++....|.|||.+++..+...+. .+.+|+|+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g------~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG------HGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH------TTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH------CCCeEEEEE
Confidence 78999999999999999988776665 356688884
No 250
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.18 E-value=6.4 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=19.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.+++++++.|+|||..+-..+..+
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 358999999999998887776554
No 251
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=74.16 E-value=11 Score=47.01 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=61.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-HHcCCcEEEE-eCCCcccccchHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-EQTGYVVGHY-CGEMGQDFWDAQRW 396 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-~~~~l~v~~~-~G~~~~~~~~~~~w 396 (1931)
=++|++++|+|||..++..+.+.... .+.+|+++...-. ..|+...+. ...++....+ .|... ...|
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~-----~g~~vl~~slE~~-~~~l~~R~~~~~~~i~~~~l~~g~l~-----~~~~ 270 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALK-----EGVGVGIYSLEMP-AAQLTLRMMCSEARIDMNRVRLGQLT-----DRDF 270 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-----TCCCEEEEESSSC-HHHHHHHHHHHHTTCCTTTCCGGGCC-----HHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhCCCCC-----HHHH
Confidence 36899999999998888877766542 2345888876432 345554443 2333321111 22222 2334
Q ss_pred Hhh------cCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QRE------FDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~------~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+. +....+.|- |...+...+.+ ...-..+++||||..+.+..
T Consensus 271 ~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~-l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 271 SRLVDVASRLSEAPIYIDDTPDLTLMEVRARARR-LVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHH-HHHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH-HHHHcCCCEEEEcChhhcCC
Confidence 332 123455553 45555544432 11123688999999998864
No 252
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=74.14 E-value=1.2 Score=56.79 Aligned_cols=77 Identities=23% Similarity=0.354 Sum_probs=51.9
Q ss_pred cCCcEEEccc------CCCeEEEEeeccCCCCC-CCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEeeccccc
Q 000174 1235 LEGRIVTAAH------SGKRFYVESIRYEMTAE-SSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGRGVSYC 1307 (1931)
Q Consensus 1235 l~~~vv~~~~------~~~~y~v~~v~~dltp~-s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~~~~~~ 1307 (1931)
|.|.-|...| .++.|.|.++.. .++. ..|+.. + ...|-.+||+ +|++.+..++-|+|++.+-
T Consensus 417 l~~l~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~f~~~-~-----~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~--- 485 (509)
T 1r6z_P 417 LRGINVVYTPPQSFQSAPRVYRVNGLSR-APASSETFEHD-G-----KKVTIASYFH-SRNYPLKFPQLHCLNVGSS--- 485 (509)
T ss_dssp HTTCEEEECCCGGGCCCCEEEECCEEEE-EETTTCEEEET-T-----EEEEHHHHHH-HTTCCCSCTTSEEEECSCT---
T ss_pred hCCcEEEEecCCCccCCCCeEEEeeCCC-CChhhcEeccC-C-----eEEEHHHHHH-HcCCcccCCCCCeEecCCC---
Confidence 4566565555 356688877754 1222 235433 1 4578899999 8999999999999985310
Q ss_pred cccCCCccccccccccccccccccceEEEcCCccccccc
Q 000174 1308 KNLLSPRFEHSEEQEGEGEEILDKTYYVFLPPELCFIHP 1346 (1931)
Q Consensus 1308 ~n~l~~~~~~~~~~~~~~~~~~~k~~~~~L~Pelc~v~~ 1346 (1931)
.+ .+++|.|+|.+.+
T Consensus 486 ----------------------~~--~~~~P~e~~~i~~ 500 (509)
T 1r6z_P 486 ----------------------IK--SILLPIELCSIEE 500 (509)
T ss_dssp ----------------------TS--CCEECGGGEEEEC
T ss_pred ----------------------CC--CceecceeeEecC
Confidence 01 2589999999976
No 253
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=73.84 E-value=8.2 Score=48.27 Aligned_cols=110 Identities=9% Similarity=0.150 Sum_probs=60.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH-HHcCCcEEE-EeCCCcccccchHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR-EQTGYVVGH-YCGEMGQDFWDAQRW 396 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~-~~~~l~v~~-~~G~~~~~~~~~~~w 396 (1931)
-++|++++|+|||..++..+.+.... .+.+|+++...-.- .|+...+. ..+++.... ..|.... ..|
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~-----~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~-----~~~ 273 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATK-----TNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP-----EDW 273 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHH-----SSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH-----HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-----CCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH-----HHH
Confidence 47899999999999888877766542 13458888764332 44444442 233332111 1222222 233
Q ss_pred Hhh------cCCccEEEE-----cHHHHHHHHhcccccccceeEEEEeCCCcccC
Q 000174 397 QRE------FDTKQVLVM-----TAQILLNILRHSIIKMEAINLLILDECHHAVK 440 (1931)
Q Consensus 397 ~~~------~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~lLV~DEaH~~~~ 440 (1931)
.+. +....+.+. |.+.+...+.. ...-..+++||||+.+.+..
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~-l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRR-LKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHH-HHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHH-HHHHcCCCEEEEccHHHhcc
Confidence 321 123345553 45555444332 11223689999999999874
No 254
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.58 E-value=5.3 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+++++|+|+|||..+-.++.+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999988776543
No 255
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.85 E-value=11 Score=50.34 Aligned_cols=24 Identities=42% Similarity=0.423 Sum_probs=20.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+++|+|||.++-.++..+
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHH
Confidence 679999999999999887766544
No 256
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=72.07 E-value=3.2 Score=56.41 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=39.6
Q ss_pred ccCCcEEEcccCC---------------CeEEEEeeccCCCCC-CCCCCCCC--------CCCC-CccccHHHHHHhhcC
Q 000174 1234 DLEGRIVTAAHSG---------------KRFYVESIRYEMTAE-SSFPRKEG--------YLGP-LEYSSYADYYKQKYG 1288 (1931)
Q Consensus 1234 ~l~~~vv~~~~~~---------------~~y~v~~v~~dltp~-s~fp~~~g--------~~~~-~~~~t~~~yy~~k~~ 1288 (1931)
.|.|.-|.+.|.+ +.|.|.++... +|. -.|+..++ -.|. ..+.|..+||+++|+
T Consensus 355 ~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~-~a~~~~F~~~~~~~~~~~~~~~g~~~~~iTVadYFk~kYn 433 (1046)
T 4f1n_A 355 LLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRE-SAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYD 433 (1046)
T ss_dssp HHTTCEECCTTCC--------------CCCEECCEECSS-CSSSCC-----------------------CHHHHHHHHSC
T ss_pred HhCCCEEEEEecCccccccccccccccccceEEeeccCC-CCCceEEeccCCcccccccccCCcCceEEEHHHHHHHHhC
Confidence 4567667666643 35888887642 232 35764322 0011 136799999999999
Q ss_pred ccccCCCCceEEe
Q 000174 1289 VELIFKKQPLIRG 1301 (1931)
Q Consensus 1289 ~~l~~~~QPLL~~ 1301 (1931)
+.|.+++.|+|.+
T Consensus 434 i~LkyP~LPcV~V 446 (1046)
T 4f1n_A 434 ITLKYPDMKLVNL 446 (1046)
T ss_dssp CCCSCTTSCCEEC
T ss_pred cccCCCCCCEEEE
Confidence 9999999999994
No 257
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=71.77 E-value=9.3 Score=44.96 Aligned_cols=21 Identities=10% Similarity=-0.116 Sum_probs=17.6
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~ 339 (1931)
..|+++|.|+|||..+..++.
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999988777654
No 258
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=71.59 E-value=10 Score=42.01 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=52.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
..++||.|+++.-+...++.+.. .++.+..++|++..... ........ ...+|+|+| +.+..| +.+..+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~r-~~~~~~f~~g~~~vlvaT-----~~~~~G-idi~~v~~ 102 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLR-LGHPAQALHGDLSQGER-ERVLGAFRQGEVRVLVAT-----DVAARG-LDIPQVDL 102 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH-HTCCEEEECSSSCHHHH-HHHHHHHHSSSCCEEEEC-----TTTTCS-SSCCCBSE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH-cCCCEEEEECCCCHHHH-HHHHHHHHCCCCeEEEec-----ChhhcC-CCCccCcE
Confidence 45799999999999988888876 48899999999875432 22222221 367899999 334444 67788888
Q ss_pred EEE
Q 000174 430 LIL 432 (1931)
Q Consensus 430 LV~ 432 (1931)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 259
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=70.76 E-value=7.2 Score=47.99 Aligned_cols=82 Identities=12% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
...+.|-...+-.+... ...+.++||.++++.-+..+++.++.+.. .++++..++| +.+..++...++.+..|
T Consensus 44 pTGsGKT~~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g-----~~~~~~~~~~~~~l~~~ 116 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYS-----SMKKEEKEKFEKSFEED 116 (414)
T ss_dssp CSSSSHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCT-----TSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEEC-----CCChhhHHHHHHHhhcC
Confidence 35566765333222222 14567999999999999999999988543 5789999999 88888888888999999
Q ss_pred CceEEEEec
Q 000174 780 RVTLLVATS 788 (1931)
Q Consensus 780 ~~~vLVaTd 788 (1931)
+.+|+|+|.
T Consensus 117 ~~~Iiv~Tp 125 (414)
T 3oiy_A 117 DYHILVFST 125 (414)
T ss_dssp CCSEEEEEH
T ss_pred CCCEEEECH
Confidence 999999995
No 260
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=69.90 E-value=7.6 Score=54.08 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
...+.|-...+-.+... ...+.++||.++++.-|..+++.+..+. ..++++..++| +++..+|...++.+++|
T Consensus 101 pTGSGKTl~~l~~il~~-~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~G-----g~~~~er~~~~~~l~~g 173 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYS-----SMKKEEKEKFEKSFEED 173 (1104)
T ss_dssp STTCCHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECT-----TCCTTHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHH-HhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeC-----CCCHHHHHHHHHHHhCC
Confidence 35567776444333332 1456789999999999999999999854 35689999999 88887888889999999
Q ss_pred CceEEEEec
Q 000174 780 RVTLLVATS 788 (1931)
Q Consensus 780 ~~~vLVaTd 788 (1931)
..+|||+|.
T Consensus 174 ~~~IlV~Tp 182 (1104)
T 4ddu_A 174 DYHILVFST 182 (1104)
T ss_dssp CCSEEEEEH
T ss_pred CCCEEEECH
Confidence 999999995
No 261
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=67.55 E-value=5.6 Score=46.70 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=31.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLV 364 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv 364 (1931)
++|+++.|+|||..++-.+.+.... +.+.+++++...-.+.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~----g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQ----YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH----CTTCEEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc----CCCceEEEEeccchhh
Confidence 6899999999999888877665542 2356799998876663
No 262
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=67.09 E-value=36 Score=39.87 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=17.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~ 341 (1931)
+++.+++|+|||..+..++..+
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHH
Confidence 5688999999997777766544
No 263
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=66.85 E-value=23 Score=38.77 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=23.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
-+++.+++|+|||..+..++. . .+..++++.-.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~---~------~~~~v~~i~~~ 54 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL---L------SGKKVAYVDTE 54 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---H------HCSEEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHH---H------cCCcEEEEECC
Confidence 368999999999987777655 1 13457777643
No 264
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=66.53 E-value=10 Score=53.18 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCC
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGR 780 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~ 780 (1931)
..+.|-...+-..... ...+.+++|.|+++..|...++.+.+.-.-.++++..++| ..+..++..+++...+|.
T Consensus 633 TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~-----~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR-----FRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp CCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEEST-----TSCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeC-----CCCHHHHHHHHHHHhcCC
Confidence 4566664433222111 1245699999999999988888776531113578888888 778888999999999999
Q ss_pred ceEEEEe-cccccCCCCCCCCEEE
Q 000174 781 VTLLVAT-SVAEEGLDIRQCNVVI 803 (1931)
Q Consensus 781 ~~vLVaT-dVaeeGlDip~~~lVI 803 (1931)
++|+|+| ..+...+.+.++.+||
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEE
Confidence 9999999 4555556665555544
No 265
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.38 E-value=11 Score=47.02 Aligned_cols=114 Identities=7% Similarity=0.097 Sum_probs=61.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH-HcCCcEEEE-eCC--CcccccchH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE-QTGYVVGHY-CGE--MGQDFWDAQ 394 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~-~~~l~v~~~-~G~--~~~~~~~~~ 394 (1931)
=+||++++|+|||..++-.+.+.+.. +.+|+|++-.-. ..|+...+.. ..++....+ .|. .....|..-
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~------g~~vl~fSlEms-~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l 271 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKL 271 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT------TCEEEEECSSSC-TTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc------CCEEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHH
Confidence 37899999999999988888776652 456888876422 2344444433 223321111 222 233333211
Q ss_pred -HHHhhcCCccEEEE-----cHHHHHHHHhccccccccee--EEEEeCCCcccC
Q 000174 395 -RWQREFDTKQVLVM-----TAQILLNILRHSIIKMEAIN--LLILDECHHAVK 440 (1931)
Q Consensus 395 -~w~~~~~~~~IlV~-----Tpq~L~d~L~~~~l~l~~i~--lLV~DEaH~~~~ 440 (1931)
.....+....+.|- |...+...+.+- ..-..++ +||||=.+.+..
T Consensus 272 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l-~~~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 272 SMAIGEISNSNINIFDKAGQSVNYIWSKTRQT-KRKNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp HHHHHHHHTSCEEEECCSSCBHHHHHHHHHHH-HHHSCSSCEEEEEECSTTSBC
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHH-HHHhCCCCeEEEEecHHhccC
Confidence 11111223455542 555555444331 1113578 999999887763
No 266
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.23 E-value=8.9 Score=52.17 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=20.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++++++|+|||.++-.++..+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999998887766543
No 267
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=66.12 E-value=6.6 Score=48.93 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++|+++|+|+|||..+-.+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999998876654
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=65.88 E-value=9.7 Score=45.03 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=32.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIRE 373 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~ 373 (1931)
=++|++++|+|||..++..+.+.+.. +.+++++.-.- =..|+...+..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~------g~~vl~~slE~-s~~~l~~R~~~ 117 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDN------DDVVNLHSLEM-GKKENIKRLIV 117 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTT------TCEEEEEESSS-CHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHc------CCeEEEEECCC-CHHHHHHHHHH
Confidence 37899999999998887777665542 25788888652 23455555443
No 269
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=65.20 E-value=4.9 Score=52.91 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=44.7
Q ss_pred CccchHHHHHHHHHHcCCCCCcceeecc-----cC---CC--CCceeEEEEEEEecCCCcceeEECCCCCCHHHHHHHHH
Q 000174 1850 TQTFTRQTLNDICLRRNWPMPLYRCVRE-----GG---PA--HAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAA 1919 (1931)
Q Consensus 1850 ~~~n~~~~L~e~~~~~~~~~p~y~~~~~-----~G---p~--h~~~F~~~~~v~~~~~~~~~~g~g~~~~sKK~Ak~~AA 1919 (1931)
....|+..+++. .| ..+.|++.+. .| ++ ...-+.+.|.++-.+... ..+ .-+.||+|+|.||
T Consensus 15 ~~~~pk~~~~q~---~~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~-~~~---~~~~kkd~eq~aa 86 (950)
T 3htx_A 15 HTPTPKAIIHQK---FG-AKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSV-VSN---VFKKKKDSEQSAA 86 (950)
T ss_dssp CCCCCHHHHHHT---TG-GGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEE-ECC---CBSCHHHHHHHHH
T ss_pred CCCCHHHHHHHH---hC-cceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceE-ecc---hhhccccHHHHHH
Confidence 345688877653 33 2367876432 11 11 112267888887766653 223 4599999999999
Q ss_pred HHHHHHHh
Q 000174 1920 VLLLELLN 1927 (1931)
Q Consensus 1920 ~~~l~~L~ 1927 (1931)
+.||++|-
T Consensus 87 ~~al~~~g 94 (950)
T 3htx_A 87 ELALDKLG 94 (950)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHhC
Confidence 99999885
No 270
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=64.51 E-value=4.8 Score=47.64 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=18.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++++.+++|+|||..+-.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999988776644
No 271
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=64.18 E-value=17 Score=40.74 Aligned_cols=43 Identities=23% Similarity=0.157 Sum_probs=26.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.-+++.+++|+|||..+..++...+......+....++++.-.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3468999999999988877665432210001123457777654
No 272
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=64.13 E-value=26 Score=44.91 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=66.0
Q ss_pred eCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCCcccccchHHHHhh-c
Q 000174 324 LETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQRE-F 400 (1931)
Q Consensus 324 ~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~-~ 400 (1931)
.+....+....+..+...+.. .....++||.|+|+.-+...++.++..+ ++.+..+||++...... ...... -
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~-~~~~~f~~ 390 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKE---RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT-SLVKRFKK 390 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHH---TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH-HHHHHHHH
T ss_pred CchhHhhHHHHHHHHHHHHhh---cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH-HHHHHHhc
Confidence 333344444444444433332 2345689999999999999999998864 78999999998754321 111111 1
Q ss_pred CCccEEEEcHHHHHHHHhcccccccceeEEEEeCC
Q 000174 401 DTKQVLVMTAQILLNILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 401 ~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DEa 435 (1931)
...+|||+|. .+..| +.+.++++||.-..
T Consensus 391 g~~~vLvaT~-----~~~~G-iDip~v~~VI~~~~ 419 (563)
T 3i5x_A 391 DESGILVCTD-----VGARG-MDFPNVHEVLQIGV 419 (563)
T ss_dssp CSSEEEEECG-----GGTSS-CCCTTCCEEEEESC
T ss_pred CCCCEEEEcc-----hhhcC-CCcccCCEEEEECC
Confidence 4788999994 34444 67788888886543
No 273
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=63.56 E-value=26 Score=39.22 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=58.3
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 700 GKVTPKVQS-LIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
...+.|-.. ++-++.... .....++||.++++..+..+.+.++.+....++.+..++| +.... ...+.++
T Consensus 75 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~---~~~~~l~ 146 (237)
T 3bor_A 75 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG-----GTNVR---NEMQKLQ 146 (237)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC--------------------
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEEC-----CCchH---HHHHHHh
Confidence 355778755 344444432 2245789999999999999998887753334577777877 43322 2334556
Q ss_pred cCCceEEEEec-----cccc-CCCCCCCCEEEE
Q 000174 778 DGRVTLLVATS-----VAEE-GLDIRQCNVVIR 804 (1931)
Q Consensus 778 ~G~~~vLVaTd-----Vaee-GlDip~~~lVI~ 804 (1931)
.+..+|+|+|. .+.+ .+++..+++||.
T Consensus 147 ~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp -CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred cCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 77789999993 3333 467777887764
No 274
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=62.90 E-value=28 Score=44.79 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHHc--CCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhccccccc
Q 000174 349 NKKMLAVFLVPKVPLVYQQAEVIREQT--GYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKME 425 (1931)
Q Consensus 349 ~~~~~vL~LvPT~~Lv~Q~~~~l~~~~--~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~ 425 (1931)
....++||.|+|+.-+...++.++..+ ++.+..+||++...... ...... -...+|||+|- .+..| +.+.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~-~~~~~F~~g~~~vLVaT~-----~~~~G-iDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT-SLVKRFKKDESGILVCTD-----VGARG-MDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH-HHHHHHHHCSSEEEEECG-----GGTSS-CCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHH-HHHHHhhcCCCeEEEEcc-----hhhcC-CCcc
Confidence 345689999999999999999998865 78999999998754321 111111 14788999994 34444 6778
Q ss_pred ceeEEEEeCCC
Q 000174 426 AINLLILDECH 436 (1931)
Q Consensus 426 ~i~lLV~DEaH 436 (1931)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 89988876543
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=62.77 E-value=14 Score=44.61 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
.-++|++++|+|||..++.++.+.... +.+++|+...-.+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEHAL 114 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCCCh
Confidence 347899999999999888877766541 3457887765433
No 276
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=62.68 E-value=5.3 Score=41.22 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=18.0
Q ss_pred cCEEEEeCCCchHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLL 337 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~ 337 (1931)
.++++.+++|+|||.++-.+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 78999999999999988765
No 277
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=62.35 E-value=4.4 Score=41.78 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=17.3
Q ss_pred cCEEEEeCCCchHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLL 337 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~ 337 (1931)
.++++.+++|+|||.++-.+
T Consensus 28 ~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGG
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 78999999999999876554
No 278
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=61.31 E-value=11 Score=43.95 Aligned_cols=37 Identities=8% Similarity=-0.054 Sum_probs=24.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
-++|.+++|+|||..+..++...... .+..++++...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~-----~G~~v~~~~~e 73 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTA-----MGKKVGLAMLE 73 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-----SCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEeCc
Confidence 46899999999998777665544321 13357676543
No 279
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.65 E-value=18 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+|.|+|||..+-.++..+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 348999999999998877666544
No 280
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=60.52 E-value=63 Score=38.09 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHhc-cCEEEEeCCCchHHHHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK-KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~-~n~Il~~~TGsGKTliall~i~ 339 (1931)
-|+-+.+.+.. +. +.++|.++.|+|||......+.
T Consensus 17 gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 17 DREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp CCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHH
Confidence 45566666666 55 6789999999999987665543
No 281
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=59.80 E-value=30 Score=42.11 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhccccccccee
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
.+.++||.|+++.-+...++.++. .++.+..++|++..... ....... -...+|+|+|. .+..| +.+..++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~~h~~~~~~~r-~~~~~~f~~g~~~vlvaT~-----~~~~G-idip~v~ 346 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH-EGYACTSIHGDRSQRDR-EEALHQFRSGKSPILVATA-----VAARG-LDISNVK 346 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHH-HHHHHHHHHTSSCEEEECH-----HHHTT-SCCCCEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH-CCCCeeEecCCCCHHHH-HHHHHHHHcCCCCEEEECC-----hhhcC-CCcccCC
Confidence 467899999999999998888876 48899999999875432 1122111 14678999995 34444 6778899
Q ss_pred EEEE
Q 000174 429 LLIL 432 (1931)
Q Consensus 429 lLV~ 432 (1931)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 282
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=59.75 E-value=7.7 Score=49.26 Aligned_cols=47 Identities=9% Similarity=-0.096 Sum_probs=32.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVI 371 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l 371 (1931)
=++|++++|+|||..++-.+.+.+.. .+.+|+++.-.-. ..|....+
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~-----~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTA-----MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTT-----SCCCEEEEESSSC-HHHHHHHH
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHh-----cCCcEEEEeccCC-HHHHHHHH
Confidence 37899999999999888887766542 1345888876432 34555544
No 283
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=57.54 E-value=39 Score=37.83 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----ccc-cC
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----VAE-EG 793 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----Vae-eG 793 (1931)
.+.++||.++++.-+..+.+.+..+....++++..++| +.+...+...+.. ..+|+|+|. .+. ..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~ 171 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG-----GAPKGPQIRDLER----GVEICIATPGRLIDFLECGK 171 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT-----TSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTS
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC-----CCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCC
Confidence 46789999999999988887776532124678889999 6666555444432 478999995 333 34
Q ss_pred CCCCCCCEEEEcCC----CCCHHHHHHhhccCCCCCCcEEEEEec
Q 000174 794 LDIRQCNVVIRFDL----AKTVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 794 lDip~~~lVI~fD~----p~s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
+++..+.+||.=+. .+.....+.++-+.-+.+.+.++|..+
T Consensus 172 ~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 172 TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 67888888774221 123333444444433444455555544
No 284
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=57.42 E-value=18 Score=42.36 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=52.6
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
..++||.|+++.-+...++.+.. .++.+..+||++...... ...... -...+|+|+| +.+..| +.+..+++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~-~g~~~~~lhg~l~~~~r~-~~~~~f~~g~~~vLVaT-----~va~~G-idi~~v~~ 99 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR-LGHPAQALHGDMSQGERE-RVMGAFRQGEVRVLVAT-----DVAARG-LDIPQVDL 99 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT-TTCCEEEECSCCCTHHHH-HHHHHHHHTSCCEEEEC-----STTTCS-TTCCCCSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCCHHHHH-HHHHHhhcCCceEEEEe-----chhhcC-ccccceeE
Confidence 45699999999998888887765 488999999998754322 122221 1367899999 334443 67788888
Q ss_pred EEE
Q 000174 430 LIL 432 (1931)
Q Consensus 430 LV~ 432 (1931)
||.
T Consensus 100 VI~ 102 (300)
T 3i32_A 100 VVH 102 (300)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 285
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=57.23 E-value=30 Score=32.83 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=37.1
Q ss_pred cchhhhhhhhHHHHHHHHH--HHhCCCCCCchhhHHHhhhhccHHHHHHHHHcCCccce
Q 000174 1403 ERAELLGDAYLKWVVSRFL--FLKYPQKHEGQLTRMRQQMVSNLVLYQYALSKGLQSYI 1459 (1931)
Q Consensus 1403 ERLE~LGDs~Lk~~~s~~l--~~~~p~~~eG~Ls~~R~~lVsN~~L~~~a~~~gL~~~i 1459 (1931)
.-|.-+|||.+.|+.|.-| |.-+|.-. -|-|..|+..-...||...+
T Consensus 13 K~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~ 61 (133)
T 1ztd_A 13 KGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNL 61 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGC
T ss_pred chHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcC
Confidence 4578899999999999887 56667633 47899998888888887765
No 286
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=56.70 E-value=19 Score=38.13 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=53.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
..++||.|+++.-+...++.+.. .++.+..++|++...... ...... -...+|+|+|. . +..| +.+..+++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~-~~~~~~~~hg~~~~~~r~-~~~~~f~~g~~~vLvaT~-~----~~~G-ldi~~~~~ 102 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRGMPQEERL-SRYQQFKDFQRRILVATN-L----FGRG-MDIERVNI 102 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHH-HHHHHHHTTSCSEEEESS-C----CSTT-CCGGGCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHH-HHHHHHHCCCCcEEEECC-c----hhcC-cchhhCCE
Confidence 45699999999999988888876 488999999998653311 111111 13678999993 2 2333 56778888
Q ss_pred EEEeCC
Q 000174 430 LILDEC 435 (1931)
Q Consensus 430 LV~DEa 435 (1931)
||.=..
T Consensus 103 Vi~~d~ 108 (172)
T 1t5i_A 103 AFNYDM 108 (172)
T ss_dssp EEESSC
T ss_pred EEEECC
Confidence 887443
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.68 E-value=32 Score=40.09 Aligned_cols=24 Identities=38% Similarity=0.329 Sum_probs=18.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+.+++.+++|+|||..+..++..+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999998777766544
No 288
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=56.11 E-value=61 Score=35.40 Aligned_cols=97 Identities=15% Similarity=0.236 Sum_probs=62.6
Q ss_pred CCCCHHHHHHH-HHHHHhcC-CCCceEEEEEeehhHHHHHHHHHhcCCC-CCCceeEEEEccCCCccccHHHHHHHHHHh
Q 000174 700 GKVTPKVQSLI-KILLKYQH-TEDFRAIIFVERVVAALVLPKVFAELPS-LSFVKSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 700 ~~~s~Kv~~Li-~lL~~~~~-~~~~k~IIFv~~r~ta~~L~~~L~~~~~-l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
...+.|-...+ -++..... ....++||.|+++..+..+++.++.+.. +.++++..++| +.+...+.+ .+
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g-----~~~~~~~~~---~~ 130 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG-----GLSIKKDEE---VL 130 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESC-----CSCHHHHHH---HH
T ss_pred CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeC-----CCChHHHHH---HH
Confidence 34566765433 33333322 2345899999999999988887776422 23688999999 666554433 34
Q ss_pred hcCCceEEEEecc-----c-ccCCCCCCCCEEEE
Q 000174 777 RDGRVTLLVATSV-----A-EEGLDIRQCNVVIR 804 (1931)
Q Consensus 777 r~G~~~vLVaTdV-----a-eeGlDip~~~lVI~ 804 (1931)
..+..+|+|+|.- + ...+++..+++||.
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 5577899999951 1 23467777887774
No 289
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=55.85 E-value=23 Score=45.85 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=54.5
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhh-cCCccEEEEcHHHHHHHHhccccccccee
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQRE-FDTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~-~~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
.+.++||.|+++.-+.+.++.|+. .++.+..+||++...... ...... -...+|+|+|- .+..| +.+.+++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~-~g~~~~~~h~~l~~~~R~-~~~~~F~~g~~~VlVAT~-----a~~~G-ID~p~V~ 337 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQN-LGIHAGAYHANLEPEDKT-TVHRKWSANEIQVVVATV-----AFGMG-IDKPDVR 337 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHH-HHHHHHHTTSSSEEEECT-----TSCTT-CCCSCEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHH-CCCCEEEecCCCCHHHHH-HHHHHHHcCCCeEEEEec-----hhhcC-CCccccc
Confidence 456899999999999999999887 488999999998754322 111111 24678999993 23333 5778899
Q ss_pred EEEE
Q 000174 429 LLIL 432 (1931)
Q Consensus 429 lLV~ 432 (1931)
+||.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9884
No 290
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=55.03 E-value=38 Score=37.18 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=58.7
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 700 GKVTPKVQS-LIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
...+.|-.. ++-++.... .....++||.++++..+..+.+.+..+....++++..++| +.+..++.. .++
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~---~~~ 130 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG-----GTSFVEDAE---GLR 130 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC------------------CT
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeC-----CcchHHHHh---cCC
Confidence 455677765 555555442 2345689999999999998888877653334678888888 444333222 222
Q ss_pred cCCceEEEEecc------cccCCCCCCCCEEEE
Q 000174 778 DGRVTLLVATSV------AEEGLDIRQCNVVIR 804 (1931)
Q Consensus 778 ~G~~~vLVaTdV------aeeGlDip~~~lVI~ 804 (1931)
..+|+|+|.- ....+++..+++||.
T Consensus 131 --~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 --DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp --TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 2789999952 234567777887774
No 291
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.82 E-value=13 Score=46.46 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=18.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+.+++.+|+|+|||..+-.+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999988776543
No 292
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=54.63 E-value=9.9 Score=45.65 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=27.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
-++|.+++|+|||..++.++..... .+.+++++.....+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQK------MGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH------TTCCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh------cCCeEEEEeccccc
Confidence 3689999999999887777665443 23458888776544
No 293
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=54.62 E-value=8.4 Score=42.00 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l 342 (1931)
.++++.+++|+|||..+..+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999998877665443
No 294
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=53.62 E-value=8 Score=46.49 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=28.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
+-++|+++.|+|||..++.++...... +.+++++.-..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~------g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA------GGIAAFIDAEH 99 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC------CCeEEEEECCC
Confidence 347899999999999888877665541 34577777554
No 295
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=53.58 E-value=31 Score=38.28 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=53.7
Q ss_pred CCCCHHHHH-HHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCC-CCCceeEEEEccCCCccccHHHHHHHHHHh
Q 000174 700 GKVTPKVQS-LIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPS-LSFVKSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~-l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
...+.|-.. ++-++... ....+.++||.++++..+..+.+.+..+.. ..++++..++| +....++...+
T Consensus 69 ~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~--- 140 (230)
T 2oxc_A 69 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG-----GTPLSQDKTRL--- 140 (230)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT-----TSCHHHHHHHT---
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeC-----CCCHHHHHHhc---
Confidence 355677755 44455443 223457899999999999998888876522 23688899999 66655544433
Q ss_pred hcCCceEEEEec
Q 000174 777 RDGRVTLLVATS 788 (1931)
Q Consensus 777 r~G~~~vLVaTd 788 (1931)
...+|+|+|.
T Consensus 141 --~~~~Iiv~Tp 150 (230)
T 2oxc_A 141 --KKCHIAVGSP 150 (230)
T ss_dssp --TSCSEEEECH
T ss_pred --cCCCEEEECH
Confidence 2578999985
No 296
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=53.04 E-value=13 Score=46.03 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=32.1
Q ss_pred ccCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHH
Q 000174 317 KKNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVY 365 (1931)
Q Consensus 317 ~~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~ 365 (1931)
..+++|.++||||||.....++.+.+. .+..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLL------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHH------TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHH------CCCcEEEEeCCCchhH
Confidence 489999999999999875445555444 2456888999888753
No 297
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=51.38 E-value=39 Score=41.74 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=60.9
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeC--------CCcccccchHHHH
Q 000174 326 TGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCG--------EMGQDFWDAQRWQ 397 (1931)
Q Consensus 326 TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G--------~~~~~~~~~~~w~ 397 (1931)
..++|.....-.+..... ...+.++||.++++.-+...++.++.. ++.+..++| ++.... +.....
T Consensus 340 ~~~~k~~~l~~~l~~~~~----~~~~~k~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~~-r~~~~~ 413 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQ----RKQNSKIIVFTNYRETAKKIVNELVKD-GIKAKRFVGQASKENDRGLSQRE-QKLILD 413 (494)
T ss_dssp CSCHHHHHHHHHHHHHHH----HCTTCCEEEECSCHHHHHHHHHHHHHT-TCCEEEECCSSCC-------CCH-HHHHHH
T ss_pred CCChHHHHHHHHHHHHhc----cCCCCeEEEEEccHHHHHHHHHHHHHc-CCCcEEEeccccccccccCCHHH-HHHHHH
Confidence 456666554444444332 134567999999999999888888875 889999999 554432 111111
Q ss_pred hhc-CCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 398 REF-DTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 398 ~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
+.. ...+|+|+| .. +..| +.+..+++||+-+
T Consensus 414 ~F~~~~~~vLv~T-~~----~~~G-ldl~~~~~Vi~~d 445 (494)
T 1wp9_A 414 EFARGEFNVLVAT-SV----GEEG-LDVPEVDLVVFYE 445 (494)
T ss_dssp HHHHTSCSEEEEC-GG----GGGG-GGSTTCCEEEESS
T ss_pred HHhcCCceEEEEC-Cc----cccC-CCchhCCEEEEeC
Confidence 111 357899999 32 3333 6677888888644
No 298
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=51.05 E-value=93 Score=33.37 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCCCHHHHH-HHHHHHHhc----CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHH
Q 000174 700 GKVTPKVQS-LIKILLKYQ----HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIA 774 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~----~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~ 774 (1931)
...+.|-.. ++-++.... ...+.++||.++++..+..+.+.+.... ..+++..++| +.....+.+.+.
T Consensus 46 ~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~ 118 (207)
T 2gxq_A 46 RTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA--PHLKVVAVYG-----GTGYGKQKEALL 118 (207)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC--TTSCEEEECS-----SSCSHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh--hcceEEEEEC-----CCChHHHHHHhh
Confidence 355677765 444444432 1346789999999999999998888752 3477888888 444433333332
Q ss_pred HhhcCCceEEEEec-----ccc-cCCCCCCCCEEEE
Q 000174 775 KFRDGRVTLLVATS-----VAE-EGLDIRQCNVVIR 804 (1931)
Q Consensus 775 ~Fr~G~~~vLVaTd-----Vae-eGlDip~~~lVI~ 804 (1931)
...+|+|+|. .+. ..+++..+++||.
T Consensus 119 ----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 119 ----RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp ----HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred ----CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 2578999995 222 3567788888774
No 299
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=50.73 E-value=73 Score=35.81 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=73.0
Q ss_pred CCCHHHHH-HHHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc
Q 000174 701 KVTPKVQS-LIKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD 778 (1931)
Q Consensus 701 ~~s~Kv~~-Li~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~ 778 (1931)
..+.|-.. ++-++... ......++||.++++..+..+++.++.+....++++..++| +.....+...+ .
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~----~ 159 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG-----GIDSMSQSLAL----A 159 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT-----TSCHHHHHHHH----H
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC-----CCChHHHHHHh----c
Confidence 45667654 23333322 22345689999999999988887776542213678888988 55554443332 2
Q ss_pred CCceEEEEec-----ccc--cCCCCCCCCEEEEcCCC----CCHHHHHHhhccCCCCCCcEEEEEec
Q 000174 779 GRVTLLVATS-----VAE--EGLDIRQCNVVIRFDLA----KTVLAYIQSRGRARKPGSDYILMIER 834 (1931)
Q Consensus 779 G~~~vLVaTd-----Vae--eGlDip~~~lVI~fD~p----~s~~~yiQr~GRa~R~Gs~~ivlv~~ 834 (1931)
+..+|+|+|. .+. .++++..+++||.=+.. ++....+.++-+.-+.+.+.++|..+
T Consensus 160 ~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT 226 (249)
T 3ber_A 160 KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSAT 226 (249)
T ss_dssp TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESS
T ss_pred CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEecc
Confidence 4678999994 222 46788888887742211 23333344444444444455555544
No 300
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=50.66 E-value=5.1 Score=51.77 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=42.2
Q ss_pred cCCcEEEcccCCCeEEEEeeccCCCCCCCCCCCCCCCCCCccccHHHHHHhhcCccccCCCCceEEee
Q 000174 1235 LEGRIVTAAHSGKRFYVESIRYEMTAESSFPRKEGYLGPLEYSSYADYYKQKYGVELIFKKQPLIRGR 1302 (1931)
Q Consensus 1235 l~~~vv~~~~~~~~y~v~~v~~dltp~s~fp~~~g~~~~~~~~t~~~yy~~k~~~~l~~~~QPLL~~~ 1302 (1931)
+. ..|.+.|+.++|.+..+. +.+|.|.|-.. | .|+++||.+||.+ .+.+||++.-.
T Consensus 189 ~~-~~v~~~y~~~~~~~~~~~-~~~p~~~~l~~-~-------~s~~~y~~~k~~~--~~~~~~~vv~~ 244 (685)
T 3ho1_A 189 LP-KRVRNAYDRRTWELLRLG-EEDPKELPLPG-G-------LSLLDYHASKGRL--QGREGGRVAWV 244 (685)
T ss_dssp CC-SEEEESSSCCEECCCEEE-CCCTTCC--------------CSTTTTTTTSTT--TTSCCCSEEEE
T ss_pred cc-HHHhhhcccceEEEeecc-cCCchheecCC-C-------ccHHHHHhhcccc--cccCCceEEEE
Confidence 56 788899999999999998 79999877433 3 4889999999776 77889988743
No 301
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=50.57 E-value=1.1e+02 Score=32.77 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCCHHHHHH-HHHHHHh-cCCCCceEEEEEeehhHHHHHHHHHhcCCC-CCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 701 KVTPKVQSL-IKILLKY-QHTEDFRAIIFVERVVAALVLPKVFAELPS-LSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 701 ~~s~Kv~~L-i~lL~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~-l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
..+.|-... +-++... ......++||.++++.-+..+++.+..+.. ..++.+..++| +....++.. .+
T Consensus 49 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~---~~- 119 (206)
T 1vec_A 49 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTG-----GTNLRDDIM---RL- 119 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECS-----SSCHHHHHH---HT-
T ss_pred CCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeC-----CccHHHHHH---hc-
Confidence 456666433 3344333 223456899999999999988888766422 23678888888 555443322 22
Q ss_pred cCCceEEEEec-----cccc-CCCCCCCCEEEE
Q 000174 778 DGRVTLLVATS-----VAEE-GLDIRQCNVVIR 804 (1931)
Q Consensus 778 ~G~~~vLVaTd-----Vaee-GlDip~~~lVI~ 804 (1931)
.+..+|+|+|. .+.. .+++..+++||.
T Consensus 120 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 35678999996 2233 356777887774
No 302
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=50.53 E-value=62 Score=42.32 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=59.2
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
+.++||.|+|+.-+...++.++.. ++++..++|++..... ........ ...+|+|+|- .+.+| +.+.++++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-gi~~~~lh~~~~~~~R-~~~l~~f~~g~~~VLVaT~-----~l~~G-lDip~v~l 516 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-GIKVNYLHSEIKTLER-IEIIRDLRLGKYDVLVGIN-----LLREG-LDIPEVSL 516 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-TCCEEEECTTCCHHHH-HHHHHHHHHTSCSEEEESC-----CCSTT-CCCTTEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-CCCeEEEeCCCCHHHH-HHHHHHHhcCCeEEEEecc-----hhhCC-cccCCCCE
Confidence 468999999999999888888774 8899999998764321 12211111 4678999994 34445 56778999
Q ss_pred EEEeCCCcccC
Q 000174 430 LILDECHHAVK 440 (1931)
Q Consensus 430 LV~DEaH~~~~ 440 (1931)
+|+=+++...-
T Consensus 517 Vi~~d~d~~G~ 527 (661)
T 2d7d_A 517 VAILDADKEGF 527 (661)
T ss_dssp EEETTTTCCTT
T ss_pred EEEeCcccccC
Confidence 99999887643
No 303
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=50.08 E-value=12 Score=39.78 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=19.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+++|+|||..+...+..+
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999998887766554
No 304
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=49.97 E-value=39 Score=38.45 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=50.1
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec-----ccc--c
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS-----VAE--E 792 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd-----Vae--e 792 (1931)
.+.++||.++++.-+..+++.++.+....+..+..++| +.....+... ++.+ .+|+|+|. .+. .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~ 195 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMG-----GSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTP 195 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECS-----SSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEEC-----CCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccC
Confidence 46789999999999999988887753334677888888 5554443332 3344 78999994 111 2
Q ss_pred CCCCCCCCEEE
Q 000174 793 GLDIRQCNVVI 803 (1931)
Q Consensus 793 GlDip~~~lVI 803 (1931)
++++..+.+||
T Consensus 196 ~~~~~~l~~lV 206 (262)
T 3ly5_A 196 GFMYKNLQCLV 206 (262)
T ss_dssp TCCCTTCCEEE
T ss_pred CcccccCCEEE
Confidence 35555665554
No 305
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=55.36 E-value=3.4 Score=43.98 Aligned_cols=73 Identities=22% Similarity=0.209 Sum_probs=48.8
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhccccccccee
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
..++||.|+++.-+...++.++.. ++.+..++|++...... .....| ...+|+|+| .. +..| +.+..++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~r~--~~~~~f~~g~~~vLvaT-~~----~~~G-id~~~~~ 100 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA-GINNCYLEGEMVQGKRN--EAIKRLTEGRVNVLVAT-DV----AARG-IDIPDVS 100 (170)
Confidence 457999999999988888888764 78889999987654321 111122 256799999 22 2233 4566677
Q ss_pred EEEE
Q 000174 429 LLIL 432 (1931)
Q Consensus 429 lLV~ 432 (1931)
+||.
T Consensus 101 ~Vi~ 104 (170)
T 2yjt_D 101 HVFN 104 (170)
Confidence 7765
No 306
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=49.72 E-value=33 Score=41.20 Aligned_cols=80 Identities=11% Similarity=0.135 Sum_probs=57.0
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhccccccccee
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
...++||.|+++.-+...++.++.. +..+..++|++..... ........ ...+|+|+|. .+..| +.+..++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r-~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~ 313 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE-GHEVSILHGDLQTQER-DRLIDDFREGRSKVLITTN-----VLARG-IDIPTVS 313 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECTTSCHHHH-HHHHHHHHTTSCCEEEECG-----GGSSS-CCCTTEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCCCCHHHH-HHHHHHHHCCCCCEEEECC-----hhhcC-CCcccCC
Confidence 4568999999999999888888764 7889999999865431 22222221 3678999994 33444 6788899
Q ss_pred EEEEeCCCc
Q 000174 429 LLILDECHH 437 (1931)
Q Consensus 429 lLV~DEaH~ 437 (1931)
+||.-....
T Consensus 314 ~Vi~~~~p~ 322 (395)
T 3pey_A 314 MVVNYDLPT 322 (395)
T ss_dssp EEEESSCCB
T ss_pred EEEEcCCCC
Confidence 999766554
No 307
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=48.86 E-value=28 Score=42.26 Aligned_cols=76 Identities=21% Similarity=0.186 Sum_probs=54.3
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
..++||.|+++.-+...++.++.. ++.+..++|++..... ........ ...+|+|+|. .+..| +.+..+++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~r-~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~ 337 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-GHQVALLSGEMMVEQR-AAVIERFREGKEKVLVTTN-----VCARG-IDVEQVSV 337 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-TCCCEEECTTSCHHHH-HHHHHHHHTTSCSEEEECG-----GGTSS-CCCTTEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-CCeEEEecCCCCHHHH-HHHHHHHHCCCCcEEEEcC-----ccccC-CCccCCCE
Confidence 467999999999999988888874 8889999999865432 22222221 3678999994 34444 67888999
Q ss_pred EEEeC
Q 000174 430 LILDE 434 (1931)
Q Consensus 430 LV~DE 434 (1931)
||.-.
T Consensus 338 Vi~~~ 342 (412)
T 3fht_A 338 VINFD 342 (412)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 88533
No 308
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=46.86 E-value=1.7e+02 Score=36.62 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=60.0
Q ss_pred cEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 352 MLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 352 ~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
...++++..+.-+...++.+... +.++..++|++..... ......| ...+|+|+|++.+- .| +.+..+++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~-~~~v~~~~g~~~~~~r--~~i~~~f~~g~~~vLv~T~~~~~----~G-iDip~v~~ 419 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNE-YDKVYYVSGEVDTETR--NIMKTLAENGKGIIIVASYGVFS----TG-ISVKNLHH 419 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTT-CSSEEEESSSTTHHHH--HHHHHHHHHCCSCEEEEEHHHHH----HS-CCCCSEEE
T ss_pred CCeEEEEecHHHHHHHHHHHHHc-CCCeEEEECCCCHHHH--HHHHHHHhCCCCCEEEEEcChhh----cc-cccccCcE
Confidence 34555555566666666666654 3489999998865431 1111222 36789999988876 23 67888999
Q ss_pred EEEeCCCcccCCCcHHHHHHHHHhh
Q 000174 430 LILDECHHAVKKHPYSLVMSEFYHT 454 (1931)
Q Consensus 430 LV~DEaH~~~~~~~~~~im~~~~~~ 454 (1931)
||+..+..-. ..|.+.+.+....
T Consensus 420 vi~~~~~~s~--~~~~Q~~GR~gR~ 442 (510)
T 2oca_A 420 VVLAHGVKSK--IIVLQTIGRVLRK 442 (510)
T ss_dssp EEESSCCCSC--CHHHHHHHHHHTT
T ss_pred EEEeCCCCCH--HHHHHHHhccccc
Confidence 9998887332 3566666655543
No 309
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=46.72 E-value=41 Score=37.35 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=41.6
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd 788 (1931)
.+.++||.++++..+..+.+.++.+....++++..++| +.+...+...+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIG-----GKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECC-----C--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEEC-----CCCHHHHHHhC-----CCCCEEEECH
Confidence 46789999999999999988887753334578888888 54443333322 4578999995
No 310
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=46.21 E-value=36 Score=41.23 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=53.6
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhccccccccee
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAIN 428 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~ 428 (1931)
...++||.|+++.-+...++.++. .++.+..++|++..... ........ ...+|+|+|. .+..| +.+..++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~r-~~~~~~f~~g~~~vLv~T~-----~~~~G-idip~~~ 328 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITD-LGYSCYYSHARMKQQER-NKVFHEFRQGKVRTLVCSD-----LLTRG-IDIQAVN 328 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-HTCCEEEECTTSCHHHH-HHHHHHHHTTSSSEEEESS-----CSSSS-CCCTTEE
T ss_pred CCCcEEEEEecHHHHHHHHHHHHh-cCCCeEEecCCCCHHHH-HHHHHHHhcCCCcEEEEcC-----ccccC-CCccCCC
Confidence 346899999999999988888876 47889999999865432 12222211 3678999993 33333 6778888
Q ss_pred EEEEe
Q 000174 429 LLILD 433 (1931)
Q Consensus 429 lLV~D 433 (1931)
+||.-
T Consensus 329 ~Vi~~ 333 (400)
T 1s2m_A 329 VVINF 333 (400)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88863
No 311
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=46.09 E-value=16 Score=40.99 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=30.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
-+++++++|+|||..++-.+.+.+... +..++++.-.- -..|..+.+.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~-----~~~v~~~s~E~-~~~~~~~~~~ 79 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEY-----GEPGVFVTLEE-RARDLRREMA 79 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSS-CHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhc-----CCCceeecccC-CHHHHHHHHH
Confidence 478999999999988877666544321 33477766542 2344444443
No 312
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=45.68 E-value=39 Score=37.28 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=39.7
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd 788 (1931)
.+.++||.++++.-+..+.+.+..+.. .++++..++| +.+...+.. .+.. ..+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~---~~~~-~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYG-----GRNRNGQIE---DISK-GVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC-----------CHH---HHHS-CCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEEC-----CCChHHHHH---HhcC-CCCEEEECH
Confidence 567899999999999999988887532 4678888888 444333222 2333 478999995
No 313
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=44.27 E-value=17 Score=47.91 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHcCCCCCcceeecc--------------------------------cCCCCCceeEEEEEEEecCCCcc
Q 000174 1853 FTRQTLNDICLRRNWPMPLYRCVRE--------------------------------GGPAHAKRFTYAVRVNTTDKGWT 1900 (1931)
Q Consensus 1853 n~~~~L~e~~~~~~~~~p~y~~~~~--------------------------------~Gp~h~~~F~~~~~v~~~~~~~~ 1900 (1931)
.|+..|..+|.+.++..|+|.+... ++|.-...|.|+|+|-.......
T Consensus 395 ~pr~~l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~~~~~~~~~~~~ 474 (950)
T 3htx_A 395 LPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLV 474 (950)
T ss_dssp CHHHHHHHHHHTTTCCCCEEECCC--------------------------------------------CEEEEEETTEEE
T ss_pred ChHHHHHHHHHHhhcCcceeeeccCccccccccccccccccccccchhhhcCCcccCCCCCcccceEEEEEEEecccchh
Confidence 5899999999999999999875432 23333334999999987766666
Q ss_pred eeEECC-CCCCHHHHHHHHHHHHHHHHhhh
Q 000174 1901 DECVGE-PMPSVKKAKDSAAVLLLELLNKW 1929 (1931)
Q Consensus 1901 ~~g~g~-~~~sKK~Ak~~AA~~~l~~L~~~ 1929 (1931)
.++... .=++..+|=|+|+.++|--|...
T Consensus 475 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~ 504 (950)
T 3htx_A 475 LECSPRKFYEKENDAIQNASLKALLWFSKF 504 (950)
T ss_dssp EEECCSCCCSSHHHHHHHHHHHHHHHHHTS
T ss_pred hccChhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 666542 22456789999999999877654
No 314
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=44.18 E-value=37 Score=41.93 Aligned_cols=56 Identities=23% Similarity=0.154 Sum_probs=33.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcE
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv--PT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
.+++++..|+|||.++..++..+... .+.+|+++. |.+..+..+........++.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~-----~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK-----HKKKVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-----SCCCEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-----cCCeEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 46778999999999888887665441 134466555 334444444333343344443
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=44.01 E-value=22 Score=43.93 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=20.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
..+++++++|+|||..+..++..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999888777665543
No 316
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=42.41 E-value=1.6e+02 Score=35.09 Aligned_cols=97 Identities=14% Similarity=0.225 Sum_probs=63.9
Q ss_pred CCCCHHHHHH-HHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCC-CCCceeEEEEccCCCccccHHHHHHHHHHh
Q 000174 700 GKVTPKVQSL-IKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPS-LSFVKSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 700 ~~~s~Kv~~L-i~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~-l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
...+.|-... +-++.... .....++||.|+++..+..+.+.+..+.. .+++++..++| +.+...+.. .+
T Consensus 53 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~---~~ 124 (391)
T 1xti_A 53 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG-----GLSIKKDEE---VL 124 (391)
T ss_dssp SSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECT-----TSCHHHHHH---HH
T ss_pred CCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeC-----CCCHHHHHH---HH
Confidence 3556676543 33333332 23456899999999999988877766422 23788999999 666554443 34
Q ss_pred hcCCceEEEEec-cc-----ccCCCCCCCCEEEE
Q 000174 777 RDGRVTLLVATS-VA-----EEGLDIRQCNVVIR 804 (1931)
Q Consensus 777 r~G~~~vLVaTd-Va-----eeGlDip~~~lVI~ 804 (1931)
+++..+|+|+|. .+ ...+++..+++||.
T Consensus 125 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 567789999995 11 34567788888774
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=42.33 E-value=56 Score=40.10 Aligned_cols=54 Identities=22% Similarity=0.197 Sum_probs=31.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEe--CChhHHHHHHHHHHHHcCCcE
Q 000174 320 TIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLV--PKVPLVYQQAEVIREQTGYVV 379 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~Lv--PT~~Lv~Q~~~~l~~~~~l~v 379 (1931)
++++++.|+|||..+..++..+.. .+.+++++. +.++.+..|...+....++.+
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~------~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKG------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------cCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 567799999999887777655432 134455554 334444433344444455554
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=42.00 E-value=1.6e+02 Score=34.08 Aligned_cols=23 Identities=26% Similarity=0.047 Sum_probs=17.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~ 341 (1931)
-+.+.++.|+|||..+..++..+
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35567999999997777765544
No 319
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=41.25 E-value=1.3e+02 Score=39.26 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=57.7
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc-CCccEEEEcHHHHHHHHhcccccccceeE
Q 000174 351 KMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF-DTKQVLVMTAQILLNILRHSIIKMEAINL 429 (1931)
Q Consensus 351 ~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~-~~~~IlV~Tpq~L~d~L~~~~l~l~~i~l 429 (1931)
+.++||.|+|+.-+...++.+.. .++++..++|++.... +........ ...+|+|+|- .+..| +.+..+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~-~gi~~~~lh~~~~~~~-R~~~~~~f~~g~~~VLvaT~-----~l~~G-lDip~v~l 510 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE-HGIRARYLHHELDAFK-RQALIRDLRLGHYDCLVGIN-----LLREG-LDIPEVSL 510 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH-TTCCEEEECTTCCHHH-HHHHHHHHHTTSCSEEEESC-----CCCTT-CCCTTEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHh-cCCCceeecCCCCHHH-HHHHHHHhhcCCceEEEccC-----hhhcC-ccCCCCCE
Confidence 46899999999999988888877 4788999998876432 122222222 3678999992 23444 56788999
Q ss_pred EEEeCCCccc
Q 000174 430 LILDECHHAV 439 (1931)
Q Consensus 430 LV~DEaH~~~ 439 (1931)
+|+=+++...
T Consensus 511 VI~~d~d~~G 520 (664)
T 1c4o_A 511 VAILDADKEG 520 (664)
T ss_dssp EEETTTTSCS
T ss_pred EEEeCCcccC
Confidence 9998887653
No 320
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=41.10 E-value=52 Score=36.95 Aligned_cols=59 Identities=17% Similarity=0.117 Sum_probs=41.0
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd 788 (1931)
..++||.++++..+..+.+.+..+....++++..++| +.+...+... . ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~---~-~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG-----GADTHSQIRE---V-QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS-----SSCSHHHHHH---H-SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEEC-----CCCHHHHHHH---h-CCCCCEEEECH
Confidence 3589999999999998888777642224577888888 5444333322 2 34578999995
No 321
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=41.03 E-value=33 Score=45.63 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.9
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
+.+|+++|.|+|||+.+-.++
T Consensus 239 ~GILL~GPPGTGKT~LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568999999999999876654
No 322
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=40.05 E-value=23 Score=39.64 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=31.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIR 372 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~ 372 (1931)
.-+++.+++|+|||..++..+...+.. +..++++.-.. -..|..+.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~------~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM------GEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT------TCCEEEEESSS-CHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc------CCeEEEEEccC-CHHHHHHHHH
Confidence 346899999999999887776665541 34577776543 2345554444
No 323
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=38.86 E-value=35 Score=38.24 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=49.6
Q ss_pred CCCCHHHHH-HHHHHHHhc--CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHh
Q 000174 700 GKVTPKVQS-LIKILLKYQ--HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~--~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
...+.|-.. ++-++.... ...+.++||.++++.-+..+++.+..+....++++..++| +..... .....
T Consensus 74 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~ 145 (245)
T 3dkp_A 74 PTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHK-----AAVAAK---KFGPK 145 (245)
T ss_dssp CTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCH-----HHHHHT---TTSTT
T ss_pred CCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEec-----CccHHH---Hhhhh
Confidence 355677654 444444432 2345689999999999999998887753334567777776 221111 11122
Q ss_pred hcCCceEEEEec
Q 000174 777 RDGRVTLLVATS 788 (1931)
Q Consensus 777 r~G~~~vLVaTd 788 (1931)
..+..+|+|+|.
T Consensus 146 ~~~~~~I~v~Tp 157 (245)
T 3dkp_A 146 SSKKFDILVTTP 157 (245)
T ss_dssp SCCCCCEEEECH
T ss_pred hcCCCCEEEECH
Confidence 356678999983
No 324
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=38.66 E-value=40 Score=47.45 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=47.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhc
Q 000174 321 IAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREF 400 (1931)
Q Consensus 321 Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~ 400 (1931)
+|.+..|||||.+.+.-|.+++... ..+.++|+|||.. +..+....+...++ ..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~---~~~~~il~lVP~q-~TFt~~~rl~~~l~--------~~-------------- 58 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA---PFGKPIIFLVPDQ-MTFLMEYELAKTPD--------MG-------------- 58 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC---TTSSCEEEECCGG-GHHHHHHHHTCCSS--------CS--------------
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC---CCCCcEEEEecCc-ccHHHHHHHHHhhh--------hc--------------
Confidence 6888899999999999888877642 2346799999974 44443333332221 10
Q ss_pred CCccEEEEcHHHHHHHH
Q 000174 401 DTKQVLVMTAQILLNIL 417 (1931)
Q Consensus 401 ~~~~IlV~Tpq~L~d~L 417 (1931)
...+|-|+|...|...+
T Consensus 59 ~~~~~~V~TFhsla~~i 75 (1166)
T 3u4q_B 59 GMIRAQVFSFSRLAWRV 75 (1166)
T ss_dssp EESSEEEECHHHHHHHH
T ss_pred ceeeeEEecHHHHHHHH
Confidence 11368899999887544
No 325
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=38.65 E-value=10 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
..++|.+|||+|||-+++.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999888764
No 326
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.02 E-value=15 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+|+++|+|+|||+.+-.++.+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 68999999999999987766543
No 327
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=37.95 E-value=17 Score=43.08 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=18.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++.+++|+|||..+-.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 8899999999999987766543
No 328
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=37.65 E-value=90 Score=36.23 Aligned_cols=124 Identities=12% Similarity=0.050 Sum_probs=76.6
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCC-CCCceeEEEEccCCCccccHHHHHHHHHHh
Q 000174 700 GKVTPKVQS-LIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPS-LSFVKSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~-l~~~~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
...+.|-.. ++-+|.... .....++||.++++.-|..+++.+..+.. +.++.+..++|.. ....+
T Consensus 139 ~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~------- 206 (300)
T 3fmo_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN-----KLERG------- 206 (300)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTC-----CCCTT-------
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCc-----cHhhh-------
Confidence 355677654 445665542 23345899999999999998888876532 2467788888732 21111
Q ss_pred hcCCceEEEEecc-----c-c-cCCCCCCCCEEEEcCCC-----CCHHHHHHhhccCCCCCCcEEEEEecC
Q 000174 777 RDGRVTLLVATSV-----A-E-EGLDIRQCNVVIRFDLA-----KTVLAYIQSRGRARKPGSDYILMIERG 835 (1931)
Q Consensus 777 r~G~~~vLVaTdV-----a-e-eGlDip~~~lVI~fD~p-----~s~~~yiQr~GRa~R~Gs~~ivlv~~~ 835 (1931)
.....+|||||.- + . ..+++..+.+||.=... ......+.++-+.-+.+.+.++|..+-
T Consensus 207 ~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 207 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 1355689999962 2 2 36788889988752221 345555566666555555566665443
No 329
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=37.52 E-value=16 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
..+++++|+|+|||..+-.++.++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887766543
No 330
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=37.41 E-value=30 Score=40.91 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=32.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH-HHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL-VYQQAEVI 371 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L-v~Q~~~~l 371 (1931)
.-+++++++|+|||..++.++.+........+.+.+++++.-.-.+ ..+..+.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3478999999999998887766532211011124578888766433 33443333
No 331
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=37.04 E-value=17 Score=42.53 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.6
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~ 340 (1931)
++|++|||+|||..+..++..
T Consensus 13 i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 678999999999988877543
No 332
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.01 E-value=39 Score=46.82 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCc----eeEEEEccCCCccccHHHHHHHHHHh
Q 000174 701 KVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFV----KSASLIGHNNSQEMRTFQMQETIAKF 776 (1931)
Q Consensus 701 ~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~----~~~~l~G~~~~~~~~~~~R~~~l~~F 776 (1931)
..+.|-..++-++... ...+.++||.++++.-|..+++.++.+....++ ++..++| +.+..+|.+.++.+
T Consensus 80 TGSGKTl~~lp~l~~~-~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~G-----g~~~~~~~~~~~~l 153 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFL-ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG-----RIPKREKENFMQNL 153 (1054)
T ss_dssp BTSCSHHHHHHHHHHH-HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCS-----SCCSHHHHHHHHSG
T ss_pred CCCCHHHHHHHHHHHH-hhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeC-----CCChhhHHHHHhhc
Confidence 4456664333344333 234679999999999999988888764222345 7899999 77777777777777
Q ss_pred hcCCceEEEEec
Q 000174 777 RDGRVTLLVATS 788 (1931)
Q Consensus 777 r~G~~~vLVaTd 788 (1931)
++ .+|+|+|.
T Consensus 154 ~~--~~IlV~TP 163 (1054)
T 1gku_B 154 RN--FKIVITTT 163 (1054)
T ss_dssp GG--CSEEEEEH
T ss_pred cC--CCEEEEcH
Confidence 77 89999996
No 333
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=36.99 E-value=14 Score=43.46 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.6
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~ 340 (1931)
++|++|||+|||-.+..++..
T Consensus 6 i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHT
T ss_pred EEEECCCcCCHHHHHHHHHHh
Confidence 678999999999988877643
No 334
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=36.34 E-value=88 Score=37.41 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=53.0
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 700 GKVTPKVQS-LIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
...+.|-.. ++-++.... ...+.++||.|+++..+..+.+.+.......++++..++| +.+..++...+.
T Consensus 66 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~--- 137 (394)
T 1fuu_A 66 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG-----GTSFVEDAEGLR--- 137 (394)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECS-----SCCHHHHHHHHH---
T ss_pred CCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeC-----CCchHHHHhhcC---
Confidence 456778755 444444432 2346699999999999998888777643224678888998 666555444443
Q ss_pred cCCceEEEEec
Q 000174 778 DGRVTLLVATS 788 (1931)
Q Consensus 778 ~G~~~vLVaTd 788 (1931)
..+|+|+|.
T Consensus 138 --~~~i~v~T~ 146 (394)
T 1fuu_A 138 --DAQIVVGTP 146 (394)
T ss_dssp --HCSEEEECH
T ss_pred --CCCEEEECH
Confidence 467999984
No 335
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=36.28 E-value=89 Score=36.86 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHH-hcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhc
Q 000174 700 GKVTPKVQSLIKILLK-YQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRD 778 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~-~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~ 778 (1931)
...+.|-...+-.+.. .....+.++||.++++..+..+++.+.......++.+..++| +.....+...+ .
T Consensus 52 ~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~---~- 122 (367)
T 1hv8_A 52 RTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYG-----GKAIYPQIKAL---K- 122 (367)
T ss_dssp CSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECT-----TSCHHHHHHHH---H-
T ss_pred CCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEEC-----CcchHHHHhhc---C-
Confidence 3557787654443333 333457789999999999988888887643224677888888 55544433333 2
Q ss_pred CCceEEEEec
Q 000174 779 GRVTLLVATS 788 (1931)
Q Consensus 779 G~~~vLVaTd 788 (1931)
..+|+|+|.
T Consensus 123 -~~~iiv~T~ 131 (367)
T 1hv8_A 123 -NANIVVGTP 131 (367)
T ss_dssp -TCSEEEECH
T ss_pred -CCCEEEecH
Confidence 468999994
No 336
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=35.73 E-value=19 Score=38.45 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
..+++.+++|||||.++-.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999988877653
No 337
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.67 E-value=17 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+|+++|+|+|||+.+-.++.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999988776544
No 338
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=35.51 E-value=20 Score=41.71 Aligned_cols=23 Identities=43% Similarity=0.426 Sum_probs=19.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++++++|+|+|||..+-.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999888766543
No 339
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=35.39 E-value=5.8e+02 Score=29.81 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=25.7
Q ss_pred ceeEEEEeCCCcccCCCcHHHHHHHHHhhcCCCCCcEEEEEeecCC
Q 000174 426 AINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPV 471 (1931)
Q Consensus 426 ~i~lLV~DEaH~~~~~~~~~~im~~~~~~~~~~~~p~iLgLTATP~ 471 (1931)
..+++++|.+-+......+...+..+..... ..+.++.+.|+-.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~--~de~llvLDa~t~ 254 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTK--PNLVIFVGDALAG 254 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHC--CSEEEEEEEGGGT
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhc--CCCCEEEEecHHH
Confidence 4567889998776543444444444443332 2356777877643
No 340
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.93 E-value=18 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+++++|+|+|||+.+-.++.+
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999987776543
No 341
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=34.65 E-value=1.1e+02 Score=36.82 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHH-HHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 700 GKVTPKVQSLIK-ILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 700 ~~~s~Kv~~Li~-lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
...+.|-...+- ++.... .....++||.++++.-+..+.+.+..+....++.+..++| +....++...+.
T Consensus 82 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~--- 153 (410)
T 2j0s_A 82 QSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIG-----GTNVGEDIRKLD--- 153 (410)
T ss_dssp CTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECT-----TSCHHHHHHHHH---
T ss_pred CCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEEC-----CCCHHHHHHHhh---
Confidence 355677754433 333321 2356799999999999999988887654335678888888 555554443332
Q ss_pred cCCceEEEEec
Q 000174 778 DGRVTLLVATS 788 (1931)
Q Consensus 778 ~G~~~vLVaTd 788 (1931)
...+|+|+|.
T Consensus 154 -~~~~ivv~Tp 163 (410)
T 2j0s_A 154 -YGQHVVAGTP 163 (410)
T ss_dssp -HCCSEEEECH
T ss_pred -cCCCEEEcCH
Confidence 2458999994
No 342
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=33.84 E-value=30 Score=38.47 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICN 343 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~ 343 (1931)
++++.++.|+|||..++..+..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 5889999999999999988777655
No 343
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=33.84 E-value=46 Score=41.07 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=44.5
Q ss_pred CCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec
Q 000174 720 EDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 720 ~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd 788 (1931)
...++||.++++.-|..+++.++.+....++++..++| +.+...+...+ + ..++|+|+|.
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~g-----g~~~~~~~~~l---~-~~~~Ivv~Tp 187 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG-----GTSFRHQNECI---T-RGCHVVIATP 187 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECT-----TSCHHHHHHHH---T-TCCSEEEECH
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEEC-----CCCHHHHHHHh---h-cCCCEEEECh
Confidence 35689999999999999988887753335678889999 66655544333 2 3578999994
No 344
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.48 E-value=20 Score=43.25 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=19.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++++.+|+|+|||.++-.+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999988776543
No 345
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=33.25 E-value=22 Score=40.37 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.7
Q ss_pred EEEEeCCCchHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~ 339 (1931)
++|+++||||||-.+..++.
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68899999999988776654
No 346
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.24 E-value=21 Score=43.71 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+|+++|.|+|||+.+-.++.+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 67999999999999987776544
No 347
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=32.92 E-value=23 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.4
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~ 340 (1931)
++|++|||+|||.++..++..
T Consensus 5 i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHH
Confidence 678999999999888776543
No 348
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=32.77 E-value=21 Score=40.48 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++.+++|+|||..+-.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 5689999999999988776654
No 349
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=32.50 E-value=64 Score=36.95 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=56.2
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcC---Cc
Q 000174 327 GAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFD---TK 403 (1931)
Q Consensus 327 GsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~---~~ 403 (1931)
.+||.....-.+..+.. .+.++||.+.++..+......+....++.+..++|++.... +...-..|. ..
T Consensus 94 ~s~K~~~L~~ll~~~~~------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~--R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALD------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKE--RDDIISKFQNNPSV 165 (271)
T ss_dssp TCHHHHHHHHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHH--HHHHHHHHHHCTTC
T ss_pred cCHHHHHHHHHHHHHHh------CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHH--HHHHHHHhcCCCCC
Confidence 45665444333333322 24569999999999998888888877899999999986432 222222232 34
Q ss_pred cEEEEcHHHHHHHHhcccccccceeEEEEe
Q 000174 404 QVLVMTAQILLNILRHSIIKMEAINLLILD 433 (1931)
Q Consensus 404 ~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~D 433 (1931)
.|++.+.... .. -+.+...+.||+=
T Consensus 166 ~v~L~st~~~----g~-Glnl~~a~~VI~~ 190 (271)
T 1z5z_A 166 KFIVLSVKAG----GF-GINLTSANRVIHF 190 (271)
T ss_dssp CEEEEECCTT----CC-CCCCTTCSEEEEC
T ss_pred CEEEEehhhh----cC-CcCcccCCEEEEE
Confidence 5444433322 12 2566677776653
No 350
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=32.13 E-value=20 Score=39.28 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=18.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.+++++|.|+|||..+..++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4888999999999888776554
No 351
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=31.90 E-value=40 Score=36.99 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHhc--c---CEEEEeCCCchHHHHHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK--K---NTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 305 ~~~Q~eai~~~l~--~---n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+.-+.+.+..++. + .+++.+++|+|||..+-..+..+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334444444444 2 47999999999998776665443
No 352
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=31.57 E-value=22 Score=41.63 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=18.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+.+++++|+|+|||..+-.++.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 5689999999999998877654
No 353
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.50 E-value=19 Score=44.48 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=19.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+.+|+++|+|+|||+.+-.++.+
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 78999999999999887766543
No 354
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=31.37 E-value=20 Score=42.22 Aligned_cols=22 Identities=32% Similarity=0.288 Sum_probs=18.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++|+++||+|||-++..++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988877654
No 355
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=31.22 E-value=23 Score=42.47 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
+++++++|+|+|||..+-.+...+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999888776553
No 356
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=31.19 E-value=33 Score=41.11 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=29.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
+-++|+++.|+|||..++.++.+.... +.+++|+...-.+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~------g~~vlyid~E~s~ 103 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQRE------GKTCAFIDAEHAL 103 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT------TCCEEEEESSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC------CCeEEEEeCCCCc
Confidence 447899999999999998887766542 3458888775433
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=30.68 E-value=23 Score=42.13 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
-++|+++||||||-.+..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4789999999999988776553
No 358
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=30.49 E-value=23 Score=42.77 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=18.9
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++++.+++|+|||.++-.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998877654
No 359
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=30.11 E-value=43 Score=36.76 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCC----CceeEEEEccCCCccccHHHHHHHH
Q 000174 700 GKVTPKVQS-LIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLS----FVKSASLIGHNNSQEMRTFQMQETI 773 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~----~~~~~~l~G~~~~~~~~~~~R~~~l 773 (1931)
...+.|-.. ++-++.... ...+.++||.++++..+..+++.+..+.... ++.+..++| +.+..++.
T Consensus 49 ~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~--- 120 (219)
T 1q0u_A 49 QTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIG-----GTDKQKAL--- 120 (219)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECC-----CSHHHHTT---
T ss_pred CCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeC-----CCCHHHHH---
Confidence 355778765 444444432 2345789999999999988887776542111 577888888 44332211
Q ss_pred HHhhcCCceEEEEec
Q 000174 774 AKFRDGRVTLLVATS 788 (1931)
Q Consensus 774 ~~Fr~G~~~vLVaTd 788 (1931)
+.+ ....+|+|+|.
T Consensus 121 ~~~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 121 EKL-NVQPHIVIGTP 134 (219)
T ss_dssp CCC-SSCCSEEEECH
T ss_pred HHc-CCCCCEEEeCH
Confidence 111 23567888884
No 360
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=30.04 E-value=2.8e+02 Score=34.71 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=33.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC--ChhHHHHHHHHHHHHcCCcEE
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP--KVPLVYQQAEVIREQTGYVVG 380 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP--T~~Lv~Q~~~~l~~~~~l~v~ 380 (1931)
.+++++.+|+|||..+..++..+.. . +.+++++.. -++.+..|........++.+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~----~--G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~ 160 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR----K--GWKTCLICADTFRAGAFDQLKQNATKARIPFY 160 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH----T--TCCEEEEEECCSSSHHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh----C--CCeEEEEeccccchhHHHHHHHHhhccCceEE
Confidence 4678899999999888777765543 1 344666654 244444454444444455543
No 361
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=29.93 E-value=17 Score=41.61 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.2
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+++++++|+|+|||..+-.+..+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999988776543
No 362
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=29.90 E-value=24 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
+++++++|+|+|||..+-.++..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999988876654
No 363
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=29.44 E-value=53 Score=40.30 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=22.4
Q ss_pred cHHHHHHHHHHhc---cCEEEEeCCCchHHHHHHHH
Q 000174 305 RPYQLDVLEQAKK---KNTIAFLETGAGKTLIAVLL 337 (1931)
Q Consensus 305 ~~~Q~eai~~~l~---~n~Il~~~TGsGKTliall~ 337 (1931)
.+-+..++..++. .-++|.++||||||-..-.+
T Consensus 152 ~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~al 187 (418)
T 1p9r_A 152 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAG 187 (418)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH
Confidence 4456666666654 34689999999998654443
No 364
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.35 E-value=37 Score=41.29 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPL 363 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~L 363 (1931)
.+++|.++||+|||...-.++..... .+.+++|+=|..+.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYM------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEEESSCCS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHH------CCCEEEEEeCCcCH
Confidence 78999999999999776665554432 23457888887654
No 365
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=29.04 E-value=21 Score=44.92 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=18.4
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
.++++.+|+|+|||..+-.+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGG
T ss_pred CeeEeecCchHHHHHHHHHHH
Confidence 889999999999998877654
No 366
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=28.86 E-value=97 Score=37.37 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=53.0
Q ss_pred CCCCHHHHH-HHHHHHHhc-CCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhh
Q 000174 700 GKVTPKVQS-LIKILLKYQ-HTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFR 777 (1931)
Q Consensus 700 ~~~s~Kv~~-Li~lL~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr 777 (1931)
...+.|-.. ++-++.... .....++||.++++..+..+.+.+.......+..+..++| +..... .++...
T Consensus 85 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~ 156 (414)
T 3eiq_A 85 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG-----GTNVRA---EVQKLQ 156 (414)
T ss_dssp CSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCC-----CTTHHH---HHHHHT
T ss_pred CCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEEC-----CcchHH---HHHHHh
Confidence 355667655 344444432 2256789999999999998888887643224566777777 443332 345566
Q ss_pred cCCceEEEEec
Q 000174 778 DGRVTLLVATS 788 (1931)
Q Consensus 778 ~G~~~vLVaTd 788 (1931)
.+..+|+|+|.
T Consensus 157 ~~~~~iiv~T~ 167 (414)
T 3eiq_A 157 MEAPHIIVGTP 167 (414)
T ss_dssp TTCCSEEEECH
T ss_pred cCCCCEEEECH
Confidence 68889999994
No 367
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=28.50 E-value=67 Score=40.70 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred CceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcCCceEEEEec
Q 000174 721 DFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDGRVTLLVATS 788 (1931)
Q Consensus 721 ~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G~~~vLVaTd 788 (1931)
..++||.++++.-+....+.|.. .++++..++| ..+..++..++..++.|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~----~gi~~~~l~~-----~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQA----NGVAAACLNS-----TQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECT-----TSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHH----cCCcEEEEeC-----CCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 36899999999999988888887 4788999999 78888888899999999999999995
No 368
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=28.29 E-value=28 Score=41.72 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.8
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 108 ifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 108 IMCYGQTGAGKTYTMM 123 (359)
T ss_dssp EEEEESTTSSHHHHHT
T ss_pred EEEeCCCCCCccEEeC
Confidence 5789999999998764
No 369
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.21 E-value=35 Score=36.17 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
..+++.+++|||||.++-.+...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 67999999999999988776543
No 370
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=28.00 E-value=40 Score=42.54 Aligned_cols=33 Identities=27% Similarity=0.081 Sum_probs=22.8
Q ss_pred CcHHHHHHHHHHhc--cCEEEEeCCCchHHHHHHH
Q 000174 304 ARPYQLDVLEQAKK--KNTIAFLETGAGKTLIAVL 336 (1931)
Q Consensus 304 ~~~~Q~eai~~~l~--~n~Il~~~TGsGKTliall 336 (1931)
+.+.+...+..... .++++.++||||||-..-+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~a 279 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNA 279 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 34445555555554 6799999999999865443
No 371
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=27.38 E-value=5.2e+02 Score=32.12 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=15.0
Q ss_pred EEEEeCCCchHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~ 339 (1931)
+.+.+++|+|||-..-.++.
T Consensus 296 I~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHH
Confidence 56899999999866555443
No 372
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=27.30 E-value=37 Score=41.30 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=16.3
Q ss_pred cCEEEEeCCCchHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVL 336 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall 336 (1931)
.++++.+++|+|||.++-.
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ 179 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARL 179 (387)
T ss_dssp SCEEEECSTTSSHHHHHHH
T ss_pred CCeEEecCCCcCHHHHHHH
Confidence 6789999999999987644
No 373
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=27.10 E-value=31 Score=37.35 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=19.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
..+++.+++|||||.++-.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999888776643
No 374
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=27.08 E-value=43 Score=39.90 Aligned_cols=51 Identities=18% Similarity=0.031 Sum_probs=31.8
Q ss_pred HHHHhc------cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChh
Q 000174 312 LEQAKK------KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVP 362 (1931)
Q Consensus 312 i~~~l~------~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~ 362 (1931)
+..++. .-++|++++|+|||..++.++..........+.+..++++.-...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 555553 346899999999999888776543221000113457888886543
No 375
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=26.51 E-value=33 Score=35.84 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=19.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
++++|.+..|||||.++-++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999988876543
No 376
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=26.50 E-value=33 Score=41.80 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.2
Q ss_pred EEEEeCCCchHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVL 336 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall 336 (1931)
++.++.||||||+...-
T Consensus 158 ifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 158 CFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp EEEEESTTSSHHHHHHC
T ss_pred EEeecCCCCCCCeEeec
Confidence 67899999999987643
No 377
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=26.43 E-value=68 Score=40.63 Aligned_cols=98 Identities=15% Similarity=0.126 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcEEEE--------eCCCcccccchH
Q 000174 326 TGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVVGHY--------CGEMGQDFWDAQ 394 (1931)
Q Consensus 326 TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~--------~G~~~~~~~~~~ 394 (1931)
..++|-....-.+...+. .....++||.|+++..+...++.++... ++++..+ +|++.... +..
T Consensus 369 ~~~~K~~~L~~~l~~~~~----~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-R~~ 443 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYR----YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPS-QKG 443 (556)
T ss_dssp SCCHHHHHHHHHHHHHHH----HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------
T ss_pred CCChHHHHHHHHHHHHhc----CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHH-HHH
Confidence 347776555444444332 2345679999999999998888887641 3444444 44454332 122
Q ss_pred HHHhhc--CCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 395 RWQREF--DTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 395 ~w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
...+.. ...+|+|+|- .+..| +.+..+++||.=.
T Consensus 444 ~~~~F~~~g~~~vLvaT~-----~~~~G-iDip~v~~VI~~d 479 (556)
T 4a2p_A 444 VLDAFKTSKDNRLLIATS-----VADEG-IDIVQCNLVVLYE 479 (556)
T ss_dssp ----------CCEEEEEC-----------------CEEEEET
T ss_pred HHHHhcccCceEEEEEcC-----chhcC-CCchhCCEEEEeC
Confidence 222222 2468999993 23333 5677888888633
No 378
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=26.40 E-value=52 Score=36.13 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=24.0
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeC
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVP 359 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvP 359 (1931)
.-+++.+++|+|||..+..++...... +..++++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~------~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD------GDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH------TCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC------CCeEEEEEc
Confidence 346889999999997777665544432 234666654
No 379
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=25.92 E-value=30 Score=37.78 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+-+++.++||+|||-.++.++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999987776643
No 380
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=25.82 E-value=1.2e+02 Score=40.47 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=51.8
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHH----------cCCcEEEEeCCCcccccchHHHHhhc------CCccEEEEcHHHH
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQ----------TGYVVGHYCGEMGQDFWDAQRWQREF------DTKQVLVMTAQIL 413 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~----------~~l~v~~~~G~~~~~~~~~~~w~~~~------~~~~IlV~Tpq~L 413 (1931)
....+||.+|++.-+.+.++.++.. .++.+..+||++...... ....... ....|||+|.-
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~-~v~~~f~~~~~~~g~~kVlVAT~i-- 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQ-RIFEPAPESHNGRPGRKVVISTNI-- 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHG-GGGSCCCCCSSSSCCEEEEEECTH--
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHH-HHHhhcccccCCCCceEEEEeCcH--
Confidence 3568999999999999988888751 367899999998753321 1111111 25689999942
Q ss_pred HHHHhcccccccceeEEEE
Q 000174 414 LNILRHSIIKMEAINLLIL 432 (1931)
Q Consensus 414 ~d~L~~~~l~l~~i~lLV~ 432 (1931)
+..| +.+..+.+||-
T Consensus 379 ---ae~G-idIp~v~~VId 393 (773)
T 2xau_A 379 ---AETS-LTIDGIVYVVD 393 (773)
T ss_dssp ---HHHT-CCCTTEEEEEE
T ss_pred ---HHhC-cCcCCeEEEEe
Confidence 3333 66788887773
No 381
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=25.81 E-value=30 Score=40.25 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.+++.+|+|+|||..+-.+....
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 58999999999999887766543
No 382
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=25.68 E-value=3.4e+02 Score=29.09 Aligned_cols=41 Identities=12% Similarity=0.151 Sum_probs=29.8
Q ss_pred CCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhh
Q 000174 1790 GNLATVEVYIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKET 1832 (1931)
Q Consensus 1790 g~~f~v~V~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1832 (1931)
.|..++.|+-.|+.+++|.-+ .+.-..|++...+.|+..+.
T Consensus 56 ~Pk~t~lIF~SGKiv~TGAkS--~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 56 VPKVALLIFRSGKVNCTGAKS--KEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp TTTEEEEECTTSEEEEEEESS--HHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEeCCCeEEEecCCC--HHHHHHHHHHHHHHHHhcCC
Confidence 466788888899999998653 44445677777788877653
No 383
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.54 E-value=43 Score=41.83 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=20.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+|+|+|||.++-.+...+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999888776554
No 384
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=25.05 E-value=33 Score=36.19 Aligned_cols=21 Identities=29% Similarity=0.088 Sum_probs=17.3
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~ 339 (1931)
.+++.+++|||||-++-.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999988877654
No 385
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=24.84 E-value=54 Score=38.07 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=19.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++++|.|+|||..+-..+..+
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh
Confidence 359999999999998887776554
No 386
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=24.72 E-value=53 Score=41.78 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=29.1
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCC
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPK 360 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT 360 (1931)
.+++|++.||||||...-.+|..++... .....+++++=|.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~--sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKS--TPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhC--CCcceEEEEeCCC
Confidence 7899999999999988777777766532 1223455555565
No 387
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=24.60 E-value=69 Score=37.59 Aligned_cols=55 Identities=16% Similarity=0.019 Sum_probs=32.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHHHHHh--------hhcC-C-CcEEEEEeCChhH-HHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSICNDL--------QRQN-K-KMLAVFLVPKVPL-VYQQAEVIR 372 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~l~~~--------~~~~-~-~~~vL~LvPT~~L-v~Q~~~~l~ 372 (1931)
.-++|++++|+|||..++.++.+..... ...+ . ..+++++.-...+ ..|..+.++
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999988887765432110 0011 1 1578888866543 344444443
No 388
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=24.44 E-value=35 Score=40.28 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.9
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||....
T Consensus 81 ifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 81 IFAYGQTSSGKTHTME 96 (325)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEEECCCCCCCceEec
Confidence 6789999999998764
No 389
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.36 E-value=42 Score=34.93 Aligned_cols=21 Identities=19% Similarity=-0.069 Sum_probs=16.9
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~ 339 (1931)
.+++.++.|||||.++-.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368899999999988776544
No 390
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=24.30 E-value=59 Score=44.62 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=58.4
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHHcCCcEEEEeCCCcccccchHHHHhhcC---CccEEEEcHHHHHHHHhcccccccc
Q 000174 350 KKMLAVFLVPKVPLVYQQAEVIREQTGYVVGHYCGEMGQDFWDAQRWQREFD---TKQVLVMTAQILLNILRHSIIKMEA 426 (1931)
Q Consensus 350 ~~~~vL~LvPT~~Lv~Q~~~~l~~~~~l~v~~~~G~~~~~~~~~~~w~~~~~---~~~IlV~Tpq~L~d~L~~~~l~l~~ 426 (1931)
.+.++||.|+++.-+...+..+....|+++..++|++..... ......... ..+|+|+| ..+ ..| +.+..
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R-~~~l~~F~~g~~~~~vLvaT-~v~----~~G-lDl~~ 574 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER-DRAAAWFAEEDTGAQVLLCS-EIG----SEG-RNFQF 574 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH-HHHHHHHHSTTSSCEEEECS-CCT----TCS-SCCTT
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH-HHHHHHHhCCCCcccEEEec-chh----hcC-CCccc
Confidence 456799999999999999999987679999999999876432 222222222 28899999 433 333 67888
Q ss_pred eeEEEEeCCC
Q 000174 427 INLLILDECH 436 (1931)
Q Consensus 427 i~lLV~DEaH 436 (1931)
+++||+-...
T Consensus 575 ~~~VI~~d~p 584 (968)
T 3dmq_A 575 ASHMVMFDLP 584 (968)
T ss_dssp CCEEECSSCC
T ss_pred CcEEEEecCC
Confidence 9999986665
No 391
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.29 E-value=73 Score=42.75 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHH-----------cCCcEEEEeCCCcccccchHH
Q 000174 327 GAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQ-----------TGYVVGHYCGEMGQDFWDAQR 395 (1931)
Q Consensus 327 GsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~-----------~~l~v~~~~G~~~~~~~~~~~ 395 (1931)
.++|-....-.+...+. ...+.++||.|+++..+...++.++.. .|.....++|++.... +...
T Consensus 611 ~~~K~~~L~~lL~~~~~----~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~e-R~~~ 685 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYR----YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPS-QKGV 685 (797)
T ss_dssp CCHHHHHHHHHHHHHHH----HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------
T ss_pred CChHHHHHHHHHHHHhc----cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHH-HHHH
Confidence 46776554444444332 234567999999999999999999864 2333444455554432 1122
Q ss_pred HHhhc--CCccEEEEcHHHHHHHHhcccccccceeEEEEeC
Q 000174 396 WQREF--DTKQVLVMTAQILLNILRHSIIKMEAINLLILDE 434 (1931)
Q Consensus 396 w~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~DE 434 (1931)
..+.. ...+|+|+|- .+..| +.+..+++||.=.
T Consensus 686 l~~F~~~g~~~vLVaT~-----~~~~G-IDlp~v~~VI~yd 720 (797)
T 4a2q_A 686 LDAFKTSKDNRLLIATS-----VADEG-IDIVQCNLVVLYE 720 (797)
T ss_dssp --------CCSEEEEEC-----C--------CCCSEEEEES
T ss_pred HHHhhccCCceEEEEcC-----chhcC-CCchhCCEEEEeC
Confidence 22221 2468999993 23333 5677888888633
No 392
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=24.02 E-value=1.3e+02 Score=34.84 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCceEEEEEeehhHHHHHHHHHhcCCCCCCceeEEEEccCCCccccHHHHHHHHHHhhcC
Q 000174 700 GKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVAALVLPKVFAELPSLSFVKSASLIGHNNSQEMRTFQMQETIAKFRDG 779 (1931)
Q Consensus 700 ~~~s~Kv~~Li~lL~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~~l~~~~~~~l~G~~~~~~~~~~~R~~~l~~Fr~G 779 (1931)
...+.|-...+-.+... +.++||.++++..+..+++.+.......+.++..++| +.....+... ++
T Consensus 39 ~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~-- 104 (337)
T 2z0m_A 39 KTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG-----GMPYKAQINR---VR-- 104 (337)
T ss_dssp CTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT-----TSCHHHHHHH---HT--
T ss_pred CCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC-----CcchHHHHhh---cC--
Confidence 35566775544444332 5789999999999999888887643334678888888 6555443332 33
Q ss_pred CceEEEEec
Q 000174 780 RVTLLVATS 788 (1931)
Q Consensus 780 ~~~vLVaTd 788 (1931)
..+|+|+|.
T Consensus 105 ~~~i~v~T~ 113 (337)
T 2z0m_A 105 NADIVVATP 113 (337)
T ss_dssp TCSEEEECH
T ss_pred CCCEEEECH
Confidence 377999994
No 393
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=23.99 E-value=34 Score=40.68 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=13.3
Q ss_pred EEEEeCCCchHHHHH
Q 000174 320 TIAFLETGAGKTLIA 334 (1931)
Q Consensus 320 ~Il~~~TGsGKTlia 334 (1931)
++.+++||||||...
T Consensus 98 ifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 98 ALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEecCCCCCCCeEE
Confidence 578999999999985
No 394
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=23.83 E-value=38 Score=40.42 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||....
T Consensus 81 ifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 81 IFAYGQTASGKTYTMM 96 (349)
T ss_dssp EEEEESTTSSHHHHHT
T ss_pred eeeecCCCCCCCeEEe
Confidence 5789999999998763
No 395
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=23.76 E-value=38 Score=40.74 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=13.6
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 105 ifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 105 IFAYGQTGTGKTYTME 120 (372)
T ss_dssp EEEEESTTSSHHHHHT
T ss_pred EEeecCCCCCCCEeEe
Confidence 5789999999998753
No 396
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=23.51 E-value=47 Score=34.92 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=18.7
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
.++++.++.|||||.++-.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999888776543
No 397
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=23.37 E-value=38 Score=40.43 Aligned_cols=15 Identities=47% Similarity=0.601 Sum_probs=13.3
Q ss_pred EEEEeCCCchHHHHH
Q 000174 320 TIAFLETGAGKTLIA 334 (1931)
Q Consensus 320 ~Il~~~TGsGKTlia 334 (1931)
++.+++||||||+..
T Consensus 93 ifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 93 IFAYGQTGAGKTWTM 107 (350)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEeecCCCCCCCEEe
Confidence 578999999999875
No 398
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=23.34 E-value=82 Score=39.78 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCChhHHHHHHHHHHHHc---CCcEEEEeC--------CCcccccchHHH
Q 000174 328 AGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKVPLVYQQAEVIREQT---GYVVGHYCG--------EMGQDFWDAQRW 396 (1931)
Q Consensus 328 sGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~v~~~~G--------~~~~~~~~~~~w 396 (1931)
++|.....-.+...+. .+...++||.|+++..+...++.++... ++++..++| ++.... +....
T Consensus 370 ~~k~~~l~~~l~~~~~----~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-R~~~~ 444 (555)
T 3tbk_A 370 NPKLRDLYLVLQEEYH----LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPA-QKCVL 444 (555)
T ss_dssp CHHHHHHHHHHHHHHH----HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CHHHHHHHHHHHHHhc----cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHH-HHHHH
Confidence 5666554445444433 2345679999999999999999998742 255555554 444322 12222
Q ss_pred Hhhc--CCccEEEEcHHHHHHHHhcccccccceeEEEE
Q 000174 397 QREF--DTKQVLVMTAQILLNILRHSIIKMEAINLLIL 432 (1931)
Q Consensus 397 ~~~~--~~~~IlV~Tpq~L~d~L~~~~l~l~~i~lLV~ 432 (1931)
.+.. ...+|+|+|- .+..| +.+..+++||.
T Consensus 445 ~~F~~~g~~~vLvaT~-----~~~~G-lDlp~v~~VI~ 476 (555)
T 3tbk_A 445 EAFRASGDNNILIATS-----VADEG-IDIAECNLVIL 476 (555)
T ss_dssp -------CCSEEEECC-----CTTCC-EETTSCSEEEE
T ss_pred HHHhcCCCeeEEEEcc-----hhhcC-CccccCCEEEE
Confidence 2222 2468999993 33444 66778888875
No 399
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=23.32 E-value=39 Score=40.51 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=13.8
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 92 ifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 92 IFAYGQTGTGKTFTME 107 (359)
T ss_dssp EEEEECTTSSHHHHHT
T ss_pred EEEeCCCCCCCceEEe
Confidence 5789999999998764
No 400
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=23.16 E-value=39 Score=40.38 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=17.7
Q ss_pred HHHHHhc-cC--EEEEeCCCchHHHHHH
Q 000174 311 VLEQAKK-KN--TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 311 ai~~~l~-~n--~Il~~~TGsGKTlial 335 (1931)
+++.+++ .| ++.+++||||||+...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3444455 33 5789999999998874
No 401
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=22.99 E-value=40 Score=40.33 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.5
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||....
T Consensus 107 IfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 107 IMCYGQTGAGKTYTMM 122 (358)
T ss_dssp EEEEESTTSSHHHHHT
T ss_pred EEEECCCCCCCceEec
Confidence 5788999999998753
No 402
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=22.89 E-value=39 Score=40.57 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 88 ifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 88 IFAYGQTSSGKTHTME 103 (365)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEeecCCCCCCceEEe
Confidence 5789999999999763
No 403
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.87 E-value=74 Score=43.51 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHHc---CCc--------EEEEeCCCcccccchHHHHhhc--CCccEEEEcHHHHHH
Q 000174 349 NKKMLAVFLVPKVPLVYQQAEVIREQT---GYV--------VGHYCGEMGQDFWDAQRWQREF--DTKQVLVMTAQILLN 415 (1931)
Q Consensus 349 ~~~~~vL~LvPT~~Lv~Q~~~~l~~~~---~l~--------v~~~~G~~~~~~~~~~~w~~~~--~~~~IlV~Tpq~L~d 415 (1931)
..+.++||.++++..+....+.++... +++ ...++|++.... +.....+.. ...+|||+|-
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~e-R~~il~~Fr~~g~~~VLVaT~----- 702 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPS-QKGVLDAFKTSKDNRLLIATS----- 702 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEEEC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHH-HHHHHHHhhccCCeeEEEEeC-----
Confidence 345789999999999999999998752 333 344455555432 122222221 2468999993
Q ss_pred HHhcccccccceeEEEEeCC
Q 000174 416 ILRHSIIKMEAINLLILDEC 435 (1931)
Q Consensus 416 ~L~~~~l~l~~i~lLV~DEa 435 (1931)
.+..| +.+..+++||+=..
T Consensus 703 ~~~eG-IDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 703 VADEG-IDIVQCNLVVLYEY 721 (936)
T ss_dssp C-------CCCCSEEEEESC
T ss_pred chhcC-CcchhCCEEEEeCC
Confidence 34444 57788998887444
No 404
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=22.75 E-value=39 Score=40.86 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=13.9
Q ss_pred EEEEeCCCchHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVL 336 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall 336 (1931)
++.+++||||||....-
T Consensus 138 ifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 138 CFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp EEEESCTTSSHHHHHC-
T ss_pred EEEecCCCCCCCeEecc
Confidence 67899999999988654
No 405
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=22.73 E-value=45 Score=36.39 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=16.4
Q ss_pred EEEEeCCCchHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~ 339 (1931)
+++.++.|||||..++..+.
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 57899999999998766543
No 406
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=22.57 E-value=41 Score=40.21 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||....
T Consensus 96 ifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 96 IFAYGQTGSGKSYTMM 111 (354)
T ss_dssp EEEEECTTSSHHHHHT
T ss_pred EEeeCCCCCCCceEEe
Confidence 5789999999998863
No 407
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=22.55 E-value=37 Score=40.53 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=17.1
Q ss_pred HHHHhc-cC--EEEEeCCCchHHHHHH
Q 000174 312 LEQAKK-KN--TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 312 i~~~l~-~n--~Il~~~TGsGKTlial 335 (1931)
++.+++ .| ++.+++||||||+...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 333444 44 5789999999998764
No 408
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=22.51 E-value=40 Score=40.34 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 84 ifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMM 99 (355)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEEECCCCCCcceEee
Confidence 5789999999998763
No 409
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=22.51 E-value=41 Score=41.55 Aligned_cols=22 Identities=45% Similarity=0.477 Sum_probs=18.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
+++++.+++|+|||.++-.++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999998776654
No 410
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=22.50 E-value=30 Score=41.13 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
.++++.+++|+|||..+-.+..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 7899999999999988776554
No 411
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=22.39 E-value=39 Score=35.12 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=15.3
Q ss_pred EEEEeCCCchHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLL 337 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~ 337 (1931)
+++.+++|||||.++-.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999877665
No 412
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=22.33 E-value=41 Score=40.47 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||....
T Consensus 93 ifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 93 IFAYGQTGAGKSYTMM 108 (366)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEEeCCCCCCCceEee
Confidence 5789999999998753
No 413
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=22.25 E-value=41 Score=39.83 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHHHHHhc-cC--EEEEeCCCchHHHHHH
Q 000174 310 DVLEQAKK-KN--TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 310 eai~~~l~-~n--~Il~~~TGsGKTlial 335 (1931)
.++..+++ .| ++.+++||||||+...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 35555666 44 5789999999998763
No 414
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=21.98 E-value=41 Score=40.06 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=13.2
Q ss_pred EEEEeCCCchHHHHH
Q 000174 320 TIAFLETGAGKTLIA 334 (1931)
Q Consensus 320 ~Il~~~TGsGKTlia 334 (1931)
++.+++||||||+..
T Consensus 87 ifAYGqTGSGKTyTm 101 (344)
T 4a14_A 87 VFAYGQTGSGKTYTM 101 (344)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEecccCCCceEee
Confidence 578999999999875
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.93 E-value=58 Score=38.58 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~ 341 (1931)
++++++|.|+|||..+-.++..+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999998888776654
No 416
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.80 E-value=67 Score=37.98 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=19.8
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.++++.+|+|+|||..+-.++..+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999998887766554
No 417
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=21.76 E-value=42 Score=37.80 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=17.3
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
+++++.+|+|+|||..+-.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 458999999999998776654
No 418
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.76 E-value=43 Score=40.81 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=18.2
Q ss_pred HHHHHhc-cC--EEEEeCCCchHHHHHH
Q 000174 311 VLEQAKK-KN--TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 311 ai~~~l~-~n--~Il~~~TGsGKTlial 335 (1931)
++..+++ .| ++.+++||||||+...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4444555 44 5789999999999864
No 419
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=21.71 E-value=42 Score=40.16 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 109 ifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 109 VLAYGATGAGKTHTML 124 (355)
T ss_dssp EEEECCTTSSHHHHHT
T ss_pred EEEeCCCCCCceeeec
Confidence 5789999999998763
No 420
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.71 E-value=48 Score=44.20 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=20.5
Q ss_pred cCEEEEeCCCchHHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.|+|+++|+|+|||.++-.++..+
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999887776554
No 421
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=21.54 E-value=41 Score=40.50 Aligned_cols=16 Identities=44% Similarity=0.584 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 104 ifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 104 VFAYGQTGTGKTHTMV 119 (373)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEeecCCCCCcceecc
Confidence 5789999999998754
No 422
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.43 E-value=53 Score=34.92 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=17.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.+++.+..|||||.++-.+...
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999887766543
No 423
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=21.18 E-value=47 Score=35.43 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.3
Q ss_pred cCEEEEeCCCchHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIR 339 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~ 339 (1931)
..+++.+++|||||.++-.+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999988776654
No 424
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=21.09 E-value=52 Score=34.90 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=17.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.+++.+++|||||.++-.+...
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999887776554
No 425
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=21.07 E-value=79 Score=38.45 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=26.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhhhcCCCcEEEEEeCCh
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSICNDLQRQNKKMLAVFLVPKV 361 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~l~~~~~~~~~~~vL~LvPT~ 361 (1931)
-++|+++.|+|||..+..++...+......+....++++.-.-
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4689999999999877755433322111112345688877543
No 426
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.06 E-value=1.4e+02 Score=34.58 Aligned_cols=23 Identities=26% Similarity=0.063 Sum_probs=17.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLIRSIC 342 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i~~~l 342 (1931)
+++.+++|+|||..+..++..+.
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999987777665443
No 427
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=21.01 E-value=42 Score=40.31 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=17.4
Q ss_pred HHHHHhc-cC--EEEEeCCCchHHHHH
Q 000174 311 VLEQAKK-KN--TIAFLETGAGKTLIA 334 (1931)
Q Consensus 311 ai~~~l~-~n--~Il~~~TGsGKTlia 334 (1931)
++..+++ .| ++.+++||||||+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4444555 33 578999999999876
No 428
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=21.01 E-value=38 Score=40.60 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.9
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.+++||||||+...
T Consensus 88 ifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 88 CFAYGQTGSGKTYTML 103 (360)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEeeCCCCCCCCEEEe
Confidence 5889999999998764
No 429
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=20.89 E-value=43 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.1
Q ss_pred cCEEEEeCCCchHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i 338 (1931)
.++++++|+|+|||.++-.+.
T Consensus 239 ~~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHH
Confidence 579999999999999877654
No 430
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=20.60 E-value=52 Score=34.90 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=15.6
Q ss_pred CEEEEeCCCchHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i 338 (1931)
-+++.+|+|+|||-..-+++
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~ 26 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLI 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999987665544
No 431
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=20.17 E-value=50 Score=36.03 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.5
Q ss_pred EEEEeCCCchHHHHHHHHH
Q 000174 320 TIAFLETGAGKTLIAVLLI 338 (1931)
Q Consensus 320 ~Il~~~TGsGKTliall~i 338 (1931)
+++.+|+|+|||-++-+++
T Consensus 11 i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6789999999998766654
No 432
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=20.14 E-value=57 Score=34.51 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~ 340 (1931)
.+++.+++|||||.++-.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999988776543
No 433
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=20.11 E-value=47 Score=40.98 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.7
Q ss_pred EEEEeCCCchHHHHHH
Q 000174 320 TIAFLETGAGKTLIAV 335 (1931)
Q Consensus 320 ~Il~~~TGsGKTlial 335 (1931)
++.++.||||||+...
T Consensus 140 IfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 140 IFAYGQTGSGKSYTMM 155 (443)
T ss_dssp EEEESSTTSSHHHHHT
T ss_pred EEEeCCCCCCCCEEee
Confidence 5789999999998763
No 434
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=20.10 E-value=58 Score=34.51 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=18.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000174 319 NTIAFLETGAGKTLIAVLLIRSI 341 (1931)
Q Consensus 319 n~Il~~~TGsGKTliall~i~~~ 341 (1931)
.+++.++.|||||.++-.+...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999998877765543
No 435
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.02 E-value=59 Score=34.66 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.6
Q ss_pred cCEEEEeCCCchHHHHHHHHHHH
Q 000174 318 KNTIAFLETGAGKTLIAVLLIRS 340 (1931)
Q Consensus 318 ~n~Il~~~TGsGKTliall~i~~ 340 (1931)
..+++.+++|||||.++-.+...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999888776543
Done!