Query 000175
Match_columns 1926
No_of_seqs 391 out of 1543
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 22:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h8d_A Myosin-VI; myosin VI, m 91.2 0.034 1.2E-06 57.5 -0.5 25 839-863 34-58 (141)
2 3vkg_A Dynein heavy chain, cyt 91.0 2.1 7.1E-05 62.4 16.5 8 1205-1212 2685-2692(3245)
3 3vkg_A Dynein heavy chain, cyt 87.8 7.5 0.00026 57.0 18.2 8 1562-1569 2921-2928(3245)
4 2zuo_A MVP, major vault protei 85.8 31 0.0011 44.9 20.2 9 347-355 391-399 (861)
5 2zuo_A MVP, major vault protei 83.2 46 0.0016 43.5 20.1 10 150-159 146-155 (861)
6 2dfs_A Myosin-5A; myosin-V, in 81.6 13 0.00043 49.8 15.0 20 154-173 241-260 (1080)
7 1f5n_A Interferon-induced guan 78.4 26 0.00088 44.1 15.5 7 56-62 42-48 (592)
8 1i84_S Smooth muscle myosin he 78.3 5.3 0.00018 53.4 10.1 20 154-173 268-287 (1184)
9 2dfs_A Myosin-5A; myosin-V, in 76.6 60 0.002 43.6 19.0 13 251-263 435-447 (1080)
10 1i84_S Smooth muscle myosin he 76.2 3.7 0.00013 54.9 7.8 20 174-193 382-401 (1184)
11 2pk2_A Cyclin-T1, protein TAT; 68.6 1 3.5E-05 52.9 0.0 14 42-55 291-304 (358)
12 2b5u_A Colicin E3; high resolu 66.9 2.6E+02 0.0088 35.0 19.9 11 501-511 266-276 (551)
13 2pk2_A Cyclin-T1, protein TAT; 40.1 6 0.00021 46.5 0.0 11 45-55 297-307 (358)
14 2b5u_A Colicin E3; high resolu 33.8 8.2E+02 0.028 30.8 20.0 7 528-534 270-276 (551)
15 3iyk_A VP5; icosahedral virus; 24.5 1.1E+03 0.039 29.5 18.3 36 541-577 86-121 (526)
No 1
>3h8d_A Myosin-VI; myosin VI, myosin 6, DAB2, cargo binding, protein-peptide complex, actin-binding, ATP-binding, calmodulin-binding; 2.20A {Mus musculus} PDB: 2kia_A
Probab=91.19 E-value=0.034 Score=57.54 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=23.1
Q ss_pred cccCcccccCCCCcccccccccccc
Q 000175 839 SRGQRWNMSGDGDHYGRNIEMESDF 863 (1926)
Q Consensus 839 ~~~~~WnipgDGD~igRQ~E~dSd~ 863 (1926)
.+..+||+||||+||.||||+|++.
T Consensus 34 ~k~G~WYAHFdGqwIaRQmElhP~K 58 (141)
T 3h8d_A 34 KKKGWWYAHFDGPWIARQMELHPDK 58 (141)
T ss_dssp CCEEEEEEEEETTEEEEEEEECSSS
T ss_pred cccceEEEeeCChhhheeeeeCCCC
Confidence 5889999999999999999999874
No 2
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.99 E-value=2.1 Score=62.40 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=4.4
Q ss_pred hhHHHHHH
Q 000175 1205 ETDKAIQD 1212 (1926)
Q Consensus 1205 e~eka~q~ 1212 (1926)
-||++|..
T Consensus 2685 ~A~~~i~~ 2692 (3245)
T 3vkg_A 2685 LAEKSIYA 2692 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 35666555
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.75 E-value=7.5 Score=56.96 Aligned_cols=8 Identities=38% Similarity=0.609 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 000175 1562 NHLGVDDN 1569 (1926)
Q Consensus 1562 ~~~~~~~~ 1569 (1926)
..+|+.++
T Consensus 2921 ~~fGLh~N 2928 (3245)
T 3vkg_A 2921 IWLGLPEN 2928 (3245)
T ss_dssp GGGTSCTT
T ss_pred cccCCChh
Confidence 34455544
No 4
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=85.78 E-value=31 Score=44.93 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=6.5
Q ss_pred CCccccccc
Q 000175 347 RDSETGKVS 355 (1926)
Q Consensus 347 r~~~~~k~~ 355 (1926)
||..+|||.
T Consensus 391 rd~kTG~VR 399 (861)
T 2zuo_A 391 QDVKTGKVR 399 (861)
T ss_dssp EETTTCCEE
T ss_pred EEcCCccEE
Confidence 677777765
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=83.22 E-value=46 Score=43.46 Aligned_cols=10 Identities=40% Similarity=1.082 Sum_probs=6.0
Q ss_pred CCcccccCCC
Q 000175 150 DGVGVYVPPS 159 (1926)
Q Consensus 150 ~~~~~~~~~s 159 (1926)
.++|.|.|..
T Consensus 146 ~gPGtY~P~v 155 (861)
T 2zuo_A 146 EGPGTYIPQK 155 (861)
T ss_dssp CSSCCCCSSS
T ss_pred ECCceecCCC
Confidence 5566666654
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.63 E-value=13 Score=49.80 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=11.2
Q ss_pred cccCCCCCcCCCCCCCCCCC
Q 000175 154 VYVPPSVRSGTVGPALSSFA 173 (1926)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (1926)
.|+=--.||-...+.++.||
T Consensus 241 ~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 241 TYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp EECCCCGGGTCCCTTCCSBH
T ss_pred eEeecCceeeccCCCCCcch
Confidence 45555555555555666665
No 7
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=78.37 E-value=26 Score=44.10 Aligned_cols=7 Identities=14% Similarity=0.168 Sum_probs=3.5
Q ss_pred EEeeccC
Q 000175 56 LVLSRPR 62 (1926)
Q Consensus 56 ~vlsr~r 62 (1926)
+|+++|+
T Consensus 42 aivG~pn 48 (592)
T 1f5n_A 42 AIVGLYR 48 (592)
T ss_dssp EEEEBTT
T ss_pred EEECCCC
Confidence 3555554
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=78.32 E-value=5.3 Score=53.43 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=12.0
Q ss_pred cccCCCCCcCCCCCCCCCCC
Q 000175 154 VYVPPSVRSGTVGPALSSFA 173 (1926)
Q Consensus 154 ~~~~~s~~~~~~~~~~~~~~ 173 (1926)
.|+---.||-...+.++.||
T Consensus 268 ~ylLEksRv~~q~~~Ernfh 287 (1184)
T 1i84_S 268 TYLLEKSRAIRQAKDERTFH 287 (1184)
T ss_dssp ECCCCCGGGSCCCTTCCCCT
T ss_pred EeecCCceeeeecCCCCchh
Confidence 45555556555566666666
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.61 E-value=60 Score=43.56 Aligned_cols=13 Identities=15% Similarity=-0.018 Sum_probs=8.3
Q ss_pred ccccCCCCCCCCC
Q 000175 251 RLRENGGINHDTG 263 (1926)
Q Consensus 251 ~~~~~~~~~~~~g 263 (1926)
.++-.|-+.|..+
T Consensus 435 vLDI~GFE~f~~N 447 (1080)
T 2dfs_A 435 VLDIYGFETFEIN 447 (1080)
T ss_dssp EEEECCCCCCSSB
T ss_pred eeccCCccccCcC
Confidence 4477777777655
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=76.24 E-value=3.7 Score=54.92 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=12.1
Q ss_pred ccccceeeccCCCccccccc
Q 000175 174 PAEKASVLRGEDFPSLQAAL 193 (1926)
Q Consensus 174 ~~e~~~vlrgedfpsl~a~~ 193 (1926)
.+++|+-|=|=|.-.|..+|
T Consensus 382 ~~~~~a~lLg~~~~~l~~~l 401 (1184)
T 1i84_S 382 AAQKVCHLMGINVTDFTRSI 401 (1184)
T ss_dssp HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHh
Confidence 45666666666655565555
No 11
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=68.65 E-value=1 Score=52.89 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCce
Q 000175 42 SNRARPTGGGGGGM 55 (1926)
Q Consensus 42 ~~~~~~~~gg~ggm 55 (1926)
+++|++||||+|||
T Consensus 291 ~~~~~~~~~~~~~~ 304 (358)
T 2pk2_A 291 GSGGGSGGGTSGGV 304 (358)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444455554
No 12
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=66.89 E-value=2.6e+02 Score=35.01 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=7.2
Q ss_pred CCCCCCCcCCC
Q 000175 501 PHNDPMHNFSR 511 (1926)
Q Consensus 501 l~~DP~~~Fgr 511 (1926)
-.+|=+++|+.
T Consensus 266 nthDAII~FPe 276 (551)
T 2b5u_A 266 NTRDAVIRFPK 276 (551)
T ss_dssp TEEEEEEECCG
T ss_pred CccceEEECCC
Confidence 34566778874
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=40.09 E-value=6 Score=46.51 Aligned_cols=11 Identities=36% Similarity=0.447 Sum_probs=0.0
Q ss_pred CCCCCCCCCce
Q 000175 45 ARPTGGGGGGM 55 (1926)
Q Consensus 45 ~~~~~gg~ggm 55 (1926)
||+|+||+||-
T Consensus 297 ~~~~~~~~~~~ 307 (358)
T 2pk2_A 297 GGGTSGGVPGQ 307 (358)
T ss_dssp -----------
T ss_pred CCCCCCCCCCc
Confidence 33344443333
No 14
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.75 E-value=8.2e+02 Score=30.79 Aligned_cols=7 Identities=14% Similarity=0.116 Sum_probs=3.4
Q ss_pred cccccCC
Q 000175 528 FMKDFGS 534 (1926)
Q Consensus 528 fmkDfgs 534 (1926)
++-+|+.
T Consensus 270 AII~FPe 276 (551)
T 2b5u_A 270 AVIRFPK 276 (551)
T ss_dssp EEEECCG
T ss_pred eEEECCC
Confidence 3455554
No 15
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=24.47 E-value=1.1e+03 Score=29.51 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=15.2
Q ss_pred CCcchhhHHHHHhhhhhcccccccCchhHhHHHHHHH
Q 000175 541 DPFSAGLVGVVKKKKDVLKQTDFHDPVRESFEAELER 577 (1926)
Q Consensus 541 DP~s~~vlsliKKKKEe~Kqae~Ed~lREE~EaELER 577 (1926)
||.+..-... ..|-.++++..++++.+.+..+++.+
T Consensus 86 DPLsPgE~~~-~~Kl~eLE~e~k~d~~~~khn~~I~~ 121 (526)
T 3iyk_A 86 DPLSPGERGI-QAKLKELEDEQRNELVRLKYNDKIKE 121 (526)
T ss_pred CCCCHhHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444333332 33333444444445555555444433
Done!