Query 000175
Match_columns 1926
No_of_seqs 391 out of 1543
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 22:34:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000175.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000175hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2es4d1 a.137.15.1 (D:53-332) 47.4 12 0.00084 39.1 6.3 7 327-333 2-8 (280)
2 d1k47a2 d.58.26.4 (A:195-329) 12.8 36 0.0026 32.1 1.8 15 47-61 97-111 (135)
3 d1kvka2 d.58.26.3 (A:226-394) 4.0 1.6E+02 0.012 28.5 1.8 15 48-62 108-122 (169)
4 d1p9ka_ d.66.1.6 (A:) Hypothet 2.9 1.4E+02 0.01 26.2 0.1 39 1644-1684 30-73 (79)
5 d2ap3a1 a.24.27.1 (A:12-196) H 2.4 1.5E+03 0.11 19.0 12.4 151 550-700 31-181 (185)
6 d1v1ha1 b.83.1.1 (A:319-392) A 2.2 3.5E+02 0.026 23.9 1.7 22 1808-1829 42-63 (74)
7 d2a9ua1 a.118.23.1 (A:6-139) U 2.1 1.9E+03 0.14 20.2 7.3 48 568-615 87-134 (134)
8 d1v9da_ a.207.1.1 (A:) Diaphan 2.1 1.1E+03 0.077 24.4 6.0 35 575-609 297-331 (332)
9 d1uala_ c.116.1.4 (A:) tRNA(m1 2.0 2.9E+02 0.021 29.2 1.1 8 50-57 57-64 (252)
10 d1v9da_ a.207.1.1 (A:) Diaphan 1.9 1E+03 0.074 24.6 5.3 31 646-676 301-331 (332)
No 1
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=47.36 E-value=12 Score=39.11 Aligned_cols=7 Identities=57% Similarity=1.227 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 000175 327 PRPSVLP 333 (1926)
Q Consensus 327 ~~~~~~p 333 (1926)
|-|..||
T Consensus 2 ~~~~~~p 8 (280)
T d2es4d1 2 PLPAALP 8 (280)
T ss_dssp CCSCSSC
T ss_pred CCCcCCC
Confidence 4444444
No 2
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=12.76 E-value=36 Score=32.11 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=10.7
Q ss_pred CCCCCCCceEEeecc
Q 000175 47 PTGGGGGGMLVLSRP 61 (1926)
Q Consensus 47 ~~~gg~ggm~vlsr~ 61 (1926)
.|+||||+|++|..+
T Consensus 97 ~GaGgGG~~i~l~~~ 111 (135)
T d1k47a2 97 SGAGGGDCGIALSFD 111 (135)
T ss_dssp CSSCSSSEEEEEECS
T ss_pred ccCcCCCeEEEEecC
Confidence 445567888888864
No 3
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.97 E-value=1.6e+02 Score=28.53 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=10.3
Q ss_pred CCCCCCceEEeeccC
Q 000175 48 TGGGGGGMLVLSRPR 62 (1926)
Q Consensus 48 ~~gg~ggm~vlsr~r 62 (1926)
|+||||-|++|.++-
T Consensus 108 GAGgGGc~ial~~~~ 122 (169)
T d1kvka2 108 GAGGGGCGITLLKPG 122 (169)
T ss_dssp SSCSSSEEEEEECTT
T ss_pred CCCCCCeEEEEeccc
Confidence 344577788888874
No 4
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=2.93 E-value=1.4e+02 Score=26.24 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=32.3
Q ss_pred cccC-CccccccccccceeEE----eecCCcccCCCCCCceeeech
Q 000175 1644 RTIR-SEDDVDASLQSGVVRV----FEQPGIEAPSDEDDFIEVRSK 1684 (1926)
Q Consensus 1644 ~~~~-~~~dvda~lqsg~vrv----f~q~gie~p~d~ddfievrsk 1684 (1926)
.|+| |..+++.=+.+|-|+| ...||-.+.. +|-|+|.-|
T Consensus 30 ~gl~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~--~d~I~vdG~ 73 (79)
T d1p9ka_ 30 EGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVA--GQTVSFAGH 73 (79)
T ss_dssp HTSCSSSSTTSHHHHHHHHEETTBCCCCSSCCCCS--SEEEEETTE
T ss_pred CCCccCHHHHHHHHHhCCcccCCEEeccccccCCC--CCEEEECCE
Confidence 7888 9999999999999997 6788888744 567988654
No 5
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=2.38 E-value=1.5e+03 Score=19.03 Aligned_cols=151 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHhhhhhcccccccCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000175 550 VVKKKKDVLKQTDFHDPVRESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQEEQRRRLEEETREAV 629 (1926)
Q Consensus 550 liKKKKEe~Kqae~Ed~lREE~EaELEReqReeEEERKRkEEEqERerEEeRREEEEReRkEREEEErQRReEEErRere 629 (1926)
+.....+...............................................................+.........
T Consensus 31 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (185)
T d2ap3a1 31 IAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDV 110 (185)
T ss_dssp HHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 000175 630 WRAEQEQLEATRKAEEQRIAREEERQRIIMEEERRKHAAKQKLLELEERIAKRQAEAAKSDSNSSDIADEK 700 (1926)
Q Consensus 630 ErEErER~EaERReEEERKRrEEEERRreEEEERRKEEEEeKRkEEEEe~KKeKaE~EKrekeAeakaEEK 700 (1926)
.......................+.............................+...............++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ek 181 (185)
T d2ap3a1 111 LKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEK 181 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 6
>d1v1ha1 b.83.1.1 (A:319-392) Adenovirus {Human adenovirus type 2 [TaxId: 10515]}
Probab=2.18 E-value=3.5e+02 Score=23.94 Aligned_cols=22 Identities=9% Similarity=0.439 Sum_probs=0.0
Q ss_pred CcccceeecCCccccccccccc
Q 000175 1808 NLASGFIFDSENKIMDNVQTSM 1829 (1926)
Q Consensus 1808 ~l~~~~~~d~~~~~~~~~~~~~ 1829 (1926)
+|.+||.||.++.+.--..+.+
T Consensus 42 KlG~GL~fdsngaiv~klgtgl 63 (74)
T d1v1ha1 42 KIGSGIDYNENGAMITKLGAGL 63 (74)
T ss_dssp CBCTTEEECTTSCEEECBCTTC
T ss_pred EecccceecCCCCEeecccCCc
No 7
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase 8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.13 E-value=1.9e+03 Score=20.24 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000175 568 RESFEAELERVQKMQEQERQRIIEEQERALELARREEEERLRVAREQE 615 (1926)
Q Consensus 568 REE~EaELEReqReeEEERKRkEEEqERerEEeRREEEEReRkEREEE 615 (1926)
.......+++.++....-.+|-++...+...++++++++..++..+++
T Consensus 87 ~~~~~~~l~~~E~Lk~~L~~rYe~~~~~~~~~~~~~~~~~~~~~~~~q 134 (134)
T d2a9ua1 87 PGNIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 8
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.12 E-value=1.1e+03 Score=24.42 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000175 575 LERVQKMQEQERQRIIEEQERALELARREEEERLR 609 (1926)
Q Consensus 575 LEReqReeEEERKRkEEEqERerEEeRREEEEReR 609 (1926)
.....+..++..+|++++++.++.++.+++.++.|
T Consensus 297 ~~~~~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 297 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 9
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=2.01 E-value=2.9e+02 Score=29.19 Aligned_cols=8 Identities=75% Similarity=1.444 Sum_probs=0.0
Q ss_pred CCCCceEE
Q 000175 50 GGGGGMLV 57 (1926)
Q Consensus 50 gg~ggm~v 57 (1926)
|||-||||
T Consensus 57 GGGpGMVm 64 (252)
T d1uala_ 57 GGGPGMLM 64 (252)
T ss_dssp TCCSCCEE
T ss_pred CCCCccee
No 10
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.87 E-value=1e+03 Score=24.57 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000175 646 QRIAREEERQRIIMEEERRKHAAKQKLLELE 676 (1926)
Q Consensus 646 ERKRrEEEERRreEEEERRKEEEEeKRkEEE 676 (1926)
.+..++.++++.++++.+++.++++++.+++
T Consensus 301 ~~a~~e~~~~~~~~~~~~r~~~~~~~~~~~~ 331 (332)
T d1v9da_ 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Done!